BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00016166
         (2374 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34982.3| unnamed protein product [Vitis vinifera]              751   0.0  
ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron sp...   751   0.0  
gb|EMJ18282.1| hypothetical protein PRUPE_ppa000515mg [Prunus pe...   731   0.0  
gb|EXC45069.1| Chloroplastic group IIA intron splicing facilitat...   720   0.0  
ref|XP_002517407.1| conserved hypothetical protein [Ricinus comm...   715   0.0  
ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana] gi|2...   715   0.0  
ref|XP_006296749.1| hypothetical protein CARUB_v10015149mg [Caps...   714   0.0  
ref|XP_006408495.1| hypothetical protein EUTSA_v10019986mg [Eutr...   712   0.0  
ref|XP_004232267.1| PREDICTED: chloroplastic group IIA intron sp...   712   0.0  
gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]       707   0.0  
ref|XP_006338519.1| PREDICTED: chloroplastic group IIA intron sp...   703   0.0  
ref|XP_006338518.1| PREDICTED: chloroplastic group IIA intron sp...   703   0.0  
ref|XP_004297960.1| PREDICTED: uncharacterized protein LOC101297...   703   0.0  
ref|XP_006849108.1| hypothetical protein AMTR_s00028p00245370 [A...   700   0.0  
gb|EOY02282.1| CRM family member 2, putative isoform 2 [Theobrom...   700   0.0  
ref|XP_006431007.1| hypothetical protein CICLE_v10013715mg [Citr...   698   0.0  
ref|XP_006482481.1| PREDICTED: chloroplastic group IIA intron sp...   692   0.0  
ref|XP_006482480.1| PREDICTED: chloroplastic group IIA intron sp...   692   0.0  
ref|XP_006482479.1| PREDICTED: chloroplastic group IIA intron sp...   692   0.0  
ref|XP_006482478.1| PREDICTED: chloroplastic group IIA intron sp...   692   0.0  

>emb|CBI34982.3| unnamed protein product [Vitis vinifera]
          Length = 1028

 Score =  751 bits (1938), Expect = 0.0
 Identities = 397/674 (58%), Positives = 486/674 (72%), Gaps = 14/674 (2%)
 Frame = -3

Query: 2276 QSAIQRISEKLRSLGFLEQHPPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDSSW 2097
            ++AIQRI+EKLRSLG+++               GSAGEIF+P P ++  HRVG+TID SW
Sbjct: 79   KTAIQRIAEKLRSLGYVDGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTIDQSW 138

Query: 2096 STPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARARKDSEPPPTVAELTIPPEELKRLRR 1917
            S PE+PVP+PG+G  I RFH L  R +V++ +   RK+ E  PT+AELT+P EEL+RL+ 
Sbjct: 139  SLPENPVPEPGTGGVITRFHEL--RKEVKREKKLVRKEDERAPTLAELTLPEEELRRLKG 196

Query: 1916 EGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGL 1737
             G+++ K+LK+GKAGITEGIVNGIHERWRR+E+VKI+CED+C++NMKRTH+ILERKTGGL
Sbjct: 197  IGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGL 256

Query: 1736 VVWRSGSIIILYRGVDYKYPCYFHEDK--DKIFNETSLSSGMHNEPTNSQEA-------- 1587
            V+WRSGS IILYRG +YKYP +  ++   +   ++ S  S M+NE  + +E         
Sbjct: 257  VIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEEHDGKEVCSSGKGDV 316

Query: 1586 -SLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFS 1410
             S  PM                S I GVG   +   ++ GE QLEEEADRLLDGLGPRF+
Sbjct: 317  KSAGPM--------PANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFT 368

Query: 1409 DWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGR 1230
            DWWG  PLPIDADLLPAVVPG+R+PFRLLP+G+KPKLT+ EMT+L+RLGRPLPCHFALGR
Sbjct: 369  DWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGR 428

Query: 1229 NTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFY 1050
            N  LQGLA SM+KLWEKCEIAKIA+KRGVQNTNS MMAEELK LTGGTLLSRDREF VFY
Sbjct: 429  NRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFY 488

Query: 1049 RGKDFLPLVVSSAIEERRNKGNNRPKRITNENLVEALVVXXXXXXXXXXXXELKKGSEQK 870
            RGKDFLP  VSSAIE RR  G +R K+  + + +                 +   G++ +
Sbjct: 489  RGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTDDQ 548

Query: 869  QKFALEGTNSENFALQIIEN---RLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISE 699
            +  +L        A  ++E    +LS A+ K E + K LAELE +  P++ E+DKE I+E
Sbjct: 549  KTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITE 608

Query: 698  EERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXX 519
            EERYMLRKVGLRM  FLLLGRRG+FDGTVENMHLHWKYRELVKIIS   SI+        
Sbjct: 609  EERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVART 668

Query: 518  XXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLK 339
               ESGGILVAVERVSKGYAII+YRGKNY+RP  LRP TL NKR A+KRSLEAQR ESLK
Sbjct: 669  LEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLK 728

Query: 338  LHVLKFSKKISQVK 297
            LHVL+ ++ I ++K
Sbjct: 729  LHVLRLTRNIDELK 742


>ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Vitis vinifera]
          Length = 1044

 Score =  751 bits (1938), Expect = 0.0
 Identities = 397/674 (58%), Positives = 486/674 (72%), Gaps = 14/674 (2%)
 Frame = -3

Query: 2276 QSAIQRISEKLRSLGFLEQHPPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDSSW 2097
            ++AIQRI+EKLRSLG+++               GSAGEIF+P P ++  HRVG+TID SW
Sbjct: 79   KTAIQRIAEKLRSLGYVDGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTIDQSW 138

Query: 2096 STPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARARKDSEPPPTVAELTIPPEELKRLRR 1917
            S PE+PVP+PG+G  I RFH L  R +V++ +   RK+ E  PT+AELT+P EEL+RL+ 
Sbjct: 139  SLPENPVPEPGTGGVITRFHEL--RKEVKREKKLVRKEDERAPTLAELTLPEEELRRLKG 196

Query: 1916 EGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGL 1737
             G+++ K+LK+GKAGITEGIVNGIHERWRR+E+VKI+CED+C++NMKRTH+ILERKTGGL
Sbjct: 197  IGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGL 256

Query: 1736 VVWRSGSIIILYRGVDYKYPCYFHEDK--DKIFNETSLSSGMHNEPTNSQEA-------- 1587
            V+WRSGS IILYRG +YKYP +  ++   +   ++ S  S M+NE  + +E         
Sbjct: 257  VIWRSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEEHDGKEVCSSGKGDV 316

Query: 1586 -SLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFS 1410
             S  PM                S I GVG   +   ++ GE QLEEEADRLLDGLGPRF+
Sbjct: 317  KSAGPM--------PANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFT 368

Query: 1409 DWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGR 1230
            DWWG  PLPIDADLLPAVVPG+R+PFRLLP+G+KPKLT+ EMT+L+RLGRPLPCHFALGR
Sbjct: 369  DWWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGR 428

Query: 1229 NTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFY 1050
            N  LQGLA SM+KLWEKCEIAKIA+KRGVQNTNS MMAEELK LTGGTLLSRDREF VFY
Sbjct: 429  NRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFY 488

Query: 1049 RGKDFLPLVVSSAIEERRNKGNNRPKRITNENLVEALVVXXXXXXXXXXXXELKKGSEQK 870
            RGKDFLP  VSSAIE RR  G +R K+  + + +                 +   G++ +
Sbjct: 489  RGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTDDQ 548

Query: 869  QKFALEGTNSENFALQIIEN---RLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISE 699
            +  +L        A  ++E    +LS A+ K E + K LAELE +  P++ E+DKE I+E
Sbjct: 549  KTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITE 608

Query: 698  EERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXX 519
            EERYMLRKVGLRM  FLLLGRRG+FDGTVENMHLHWKYRELVKIIS   SI+        
Sbjct: 609  EERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVART 668

Query: 518  XXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLK 339
               ESGGILVAVERVSKGYAII+YRGKNY+RP  LRP TL NKR A+KRSLEAQR ESLK
Sbjct: 669  LEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLK 728

Query: 338  LHVLKFSKKISQVK 297
            LHVL+ ++ I ++K
Sbjct: 729  LHVLRLTRNIDELK 742


>gb|EMJ18282.1| hypothetical protein PRUPE_ppa000515mg [Prunus persica]
          Length = 1117

 Score =  731 bits (1886), Expect = 0.0
 Identities = 407/774 (52%), Positives = 513/774 (66%), Gaps = 17/774 (2%)
 Frame = -3

Query: 2354 LPSQNPRKPLKGXXXXXXXXXXXTVSQSAIQRISEKLRSLGFLEQHPPSSADDRPTTGPG 2175
            LPSQNP KP K               +SAIQRI+EKLRSLGF E +      ++P   P 
Sbjct: 33   LPSQNP-KPSKFAIRSSTTGTKTLAPKSAIQRIAEKLRSLGFTENN------EKPQPQPD 85

Query: 2174 S--AGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAE 2001
            +  AGEIF+P P  +  +RVG+T+DSSWSTPE+PVP+PG+G  I RFH L    K +K  
Sbjct: 86   TKYAGEIFVPLPQRLPKYRVGHTLDSSWSTPENPVPEPGTGRAIARFHELRREVKKQKEL 145

Query: 2000 ARARKDSEPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSE 1821
             +  K  E  PT+AEL++   EL+RL   G+ L K+LKIGKAGITEGIVNGIHE WRRSE
Sbjct: 146  EKTGKKEERVPTLAELSLGKGELRRLTTVGIGLRKKLKIGKAGITEGIVNGIHENWRRSE 205

Query: 1820 LVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRGVDYKYPCYFHE--DKDKI 1647
            +VKI CEDLCRMNMKRTH++LERKTGGLVVWRSGS I+LYRGV+YKYP +  +  D+D  
Sbjct: 206  VVKIVCEDLCRMNMKRTHDMLERKTGGLVVWRSGSKIVLYRGVNYKYPYFLRDKVDEDST 265

Query: 1646 FN-------ETSLSSGMHNEPTNSQEASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKA 1488
             +       +  ++ G+ NE +N   ++++P                   + GVG   + 
Sbjct: 266  IDTSHNALPDAHINDGI-NEISNEVNSAIIPSTTNERAQPM--------LVKGVGLQDRV 316

Query: 1487 HQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIK 1308
              ++ GE QL EEAD +L+GLGPRF+DWWG  PLP+DADLLPA+VPG+RKPFRLLP+G+K
Sbjct: 317  RFQLPGEAQLTEEADHMLEGLGPRFTDWWGYEPLPVDADLLPAIVPGYRKPFRLLPYGLK 376

Query: 1307 PKLTDREMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNS 1128
            PKLTD EMT ++RLGRPLPCHFALGRN NLQGLA S++KLWEKCEIAKIA+KRGVQNTN+
Sbjct: 377  PKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLASSIVKLWEKCEIAKIAVKRGVQNTNT 436

Query: 1127 VMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERRNKGNNRPKRITNENLV 948
             +MAEELK+LTGGTLL+RDREF V YRGKDFLP  VSSAIEERR    +  K+I      
Sbjct: 437  EIMAEELKRLTGGTLLARDREFIVLYRGKDFLPPAVSSAIEERRKYAIHAEKQIAE---- 492

Query: 947  EALVVXXXXXXXXXXXXELKKGSEQKQKFALEGTNSENFALQIIENR----LSQAIVKVE 780
                V            E K       K  L     +  + +++ NR    LS A+ K  
Sbjct: 493  HGTSVTTRQELEPRTEPENKHEWTNDHKMGLPSAKRKLKSAEVVVNRTSIKLSMALEKKA 552

Query: 779  MSRKRLAELETSVKPKETELDKEAISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMH 600
             + K LAELE +  P++ E+DKE I++EERYMLRKVGLRM  FLL+GRRGVFDGT+ENMH
Sbjct: 553  KAEKLLAELENAAIPQQPEIDKEGITKEERYMLRKVGLRMKPFLLMGRRGVFDGTIENMH 612

Query: 599  LHWKYRELVKIISKDHSIKXXXXXXXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPV 420
            LHWKYRELVKII  + SI+           ESGGILVAVERVSKGYAII+YRGKNY RP 
Sbjct: 613  LHWKYRELVKIICNEKSIEAVQQVAQTLEAESGGILVAVERVSKGYAIIVYRGKNYSRPA 672

Query: 419  ILRPTTLPNKRVAMKRSLEAQRCESLKLHVLKFSKKISQVKDDSYVDSTVEHM--CGLMN 246
             LRP TL NKR AMKRS+EAQR ESLKLHVL+ ++ I ++K     D   +++   G   
Sbjct: 673  SLRPQTLLNKREAMKRSIEAQRRESLKLHVLRLNENIDELKLLLVKDKEADNLQSVGESR 732

Query: 245  DIVGNDSWIMKGQNDQSSGSMQDKLVVLKDGDECSKLEVAIPSSAVVDENKLAK 84
            + +  D    K +   +  ++ D +  + +G   ++ +  I  S+  DE+++ K
Sbjct: 733  NELARD----KQEAHVTPVNLNDGMGAVVNGQLATQQDEVISFSSTWDEDEIGK 782


>gb|EXC45069.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 966

 Score =  720 bits (1859), Expect = 0.0
 Identities = 390/693 (56%), Positives = 475/693 (68%), Gaps = 8/693 (1%)
 Frame = -3

Query: 2351 PSQNPRKPLKGXXXXXXXXXXXTVSQSAIQRISEKLRSLGFLEQHPPSSADDRPTTGPGS 2172
            P     KPLK             + +SAIQRISEKLRSLGF +++P       P     S
Sbjct: 31   PFSTTPKPLKFTVRSSNADAQTLLPKSAIQRISEKLRSLGFTDENPS------PEPERSS 84

Query: 2171 AGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRFHHLWT------RDKVR 2010
            AGEIF+P P  +   RVG+TID+SWS+PE+PVP+PGSG  I RF  L T      R++ +
Sbjct: 85   AGEIFVPLPHRLPKQRVGHTIDASWSSPENPVPEPGSGTAIKRFRELKTEVRRQRREERK 144

Query: 2009 KAEARARKDSEPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWR 1830
            ++ A AR++ E  PT+AEL +PPEEL+RLR  G+ L K++K+GKAGITEGIVNGIHERWR
Sbjct: 145  ESAANAREERERVPTLAELRLPPEELRRLRTLGIGLRKKVKVGKAGITEGIVNGIHERWR 204

Query: 1829 RSELVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDKDK 1650
            +SE+VKI+CED+CRMNMKRTH++LE+KTGGLVVWRSGS I+LYRG+ YKYP YF   KD 
Sbjct: 205  QSEVVKIECEDICRMNMKRTHDLLEKKTGGLVVWRSGSKIVLYRGIKYKYP-YFFVGKDA 263

Query: 1649 IFNETSLSSGMHNEPTNSQEASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEG 1470
                T     + +E  N  + S                    S I GVG   +   ++ G
Sbjct: 264  SHTATLPVPDVGDEEQNKTDTSSSIDGVETVAPTPGNKLVQPSLIQGVGLPNRVRFQLPG 323

Query: 1469 ELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDR 1290
            E QL EEADRLLDGLGPRF+DWWG  P P+DADLL  +V G+R+PFRLLP+G+ PKLTD 
Sbjct: 324  EAQLAEEADRLLDGLGPRFTDWWGYDPQPVDADLLRPIVHGYRRPFRLLPYGVLPKLTDD 383

Query: 1289 EMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEE 1110
            EMT L+RL RPLPCHFALGRN NLQGLA S++KLWEKCE+AKIAIKRGVQNTNS MMAEE
Sbjct: 384  EMTTLRRLARPLPCHFALGRNRNLQGLASSVVKLWEKCEVAKIAIKRGVQNTNSEMMAEE 443

Query: 1109 LKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERRNKGNNRPKRITNENLVEALVVX 930
            LK LTGGTLL+RDREF V YRGKDFLP  VSSAIEERR K   + K++  E+        
Sbjct: 444  LKSLTGGTLLARDREFIVLYRGKDFLPSAVSSAIEERR-KYVIQAKKLKTEHQTSVKTEQ 502

Query: 929  XXXXXXXXXXXELKKGSEQKQKFALEGTNSE--NFALQIIENRLSQAIVKVEMSRKRLAE 756
                       EL++ +  K++   E         +++    +LS A+ K   + + LAE
Sbjct: 503  DQLGSVVCGASELREINGHKKRLPSEQRKPSVAETSVKGTSIKLSMALEKKAKAEQLLAE 562

Query: 755  LETSVKPKETELDKEAISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYREL 576
            LE +   ++ E+DKE I++EERYMLRK+GLRM  FLLLGRRGVFDGT+ENMHLHWKYREL
Sbjct: 563  LEKAESRQQPEIDKEGITKEERYMLRKIGLRMKPFLLLGRRGVFDGTIENMHLHWKYREL 622

Query: 575  VKIISKDHSIKXXXXXXXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLP 396
            VK+IS + SI+           ESGGILVAVER SKGYAII+YRGKNY RP  LRP TL 
Sbjct: 623  VKVISNEKSIEAVHQVAQTLEAESGGILVAVERESKGYAIIVYRGKNYERPASLRPQTLL 682

Query: 395  NKRVAMKRSLEAQRCESLKLHVLKFSKKISQVK 297
             KR AMKRS+EAQR +SLKLHVLK +K I  +K
Sbjct: 683  TKRAAMKRSIEAQRRQSLKLHVLKLTKNIDDLK 715


>ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
            gi|223543418|gb|EEF44949.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1009

 Score =  715 bits (1846), Expect = 0.0
 Identities = 388/671 (57%), Positives = 472/671 (70%), Gaps = 9/671 (1%)
 Frame = -3

Query: 2282 VSQSAIQRISEKLRSLGFLEQHPPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDS 2103
            V  SAIQRI++KLRSLGF E +P     +   T     GEIFIP P E+  +RVG+T+D 
Sbjct: 51   VPSSAIQRIADKLRSLGFAEHNPEPHTRNSAETKQRE-GEIFIPLPNELSKYRVGHTLDP 109

Query: 2102 SWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARARKDSEPPPTVAELTIPPEELKRL 1923
            SWSTPE+PVP+PGSG  I R+H L  R +V+K E   +K     PT+AEL++  EEL+RL
Sbjct: 110  SWSTPENPVPRPGSGNAILRYHEL--RKQVKK-EREDKKREAKVPTLAELSLSEEELRRL 166

Query: 1922 RREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG 1743
            RR G+  +++LK+GKAGITEGIVNGIHERWRRSE+VKI CEDLCRMNMKRTH++LERKTG
Sbjct: 167  RRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTG 226

Query: 1742 GLVVWRSGSIIILYRGVDYKYPCYFHEDKDKIFNETSLSSGM----HNEPTNSQEASLLP 1575
            GLVVWR+GS I+LYRGV+Y YP +  ++  +  N+TS+ +      HN+    +  S   
Sbjct: 227  GLVVWRAGSKIVLYRGVNYIYPYFLSDNTTE--NDTSIDAVQDTHKHNDSDKIKSCSSSV 284

Query: 1574 MLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGC 1395
                             + I GVG   +   ++ GE QL EE D LL+GLGPRFSDWWG 
Sbjct: 285  DGVKFSGPSPTNKAVRPALIQGVGLPNRVRFQLPGEAQLAEEVDSLLEGLGPRFSDWWGY 344

Query: 1394 APLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQ 1215
             PLP+DADLLPA+VPG++KPFRLLP+GIKP LT+ EMT LKRLGRPLPCHF LGRN  LQ
Sbjct: 345  EPLPVDADLLPAIVPGYQKPFRLLPYGIKPILTNDEMTTLKRLGRPLPCHFVLGRNRKLQ 404

Query: 1214 GLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKDF 1035
            GLA S++KLWEKCEIAKIA+KRGVQNTNS MMAEELK+LTGGTLLSRDREF V YRGKDF
Sbjct: 405  GLAASIIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKRLTGGTLLSRDREFIVLYRGKDF 464

Query: 1034 LPLVVSSAIEERRNKGNNRPK-RITNENLVE-ALVVXXXXXXXXXXXXELKKGSEQKQKF 861
            LP  VSSAI+ERRN   N  K R  N    E A               + +     +Q +
Sbjct: 465  LPSAVSSAIKERRNHVFNVAKERTDNSTSAETAKEAEDVEDGTSNSGSQDEFHGNNEQSY 524

Query: 860  ALEGTNSENFALQIIEN---RLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEER 690
             L      +F  + I+    RLS A+ K   + K LAE+E S   ++ E+DKE I++EER
Sbjct: 525  DLSKQRKLSFTKEAIKRTSIRLSMALEKKAKAVKLLAEIENSEMSQQPEIDKEGITDEER 584

Query: 689  YMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXXX 510
            YMLRKVGL+M  FLL+GRRGVFDGT+ENMHLHWKYRELVKII K+ S+            
Sbjct: 585  YMLRKVGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIICKERSLNAVHEVAQSLEA 644

Query: 509  ESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLHV 330
            ESGGILVAVERVSKGYAI++YRGKNY+RP +LRP TL +KR AMKRSLEAQR ESLKLHV
Sbjct: 645  ESGGILVAVERVSKGYAIVVYRGKNYQRPALLRPPTLLSKREAMKRSLEAQRRESLKLHV 704

Query: 329  LKFSKKISQVK 297
            L+ ++ I+ +K
Sbjct: 705  LRLTRNINDLK 715


>ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana] gi|22531018|gb|AAM97013.1|
            unknown protein [Arabidopsis thaliana]
            gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis
            thaliana] gi|332640136|gb|AEE73657.1| CRM family member 2
            [Arabidopsis thaliana]
          Length = 1011

 Score =  715 bits (1845), Expect = 0.0
 Identities = 383/677 (56%), Positives = 469/677 (69%), Gaps = 10/677 (1%)
 Frame = -3

Query: 2276 QSAIQRISEKLRSLGFLEQH--PPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDS 2103
            QSAIQRI+EKLRSLGF+E+    P+       +G  S GEIF+P P ++  HRVG+TID+
Sbjct: 57   QSAIQRIAEKLRSLGFVEEKHDSPTRRITGEESGKNSPGEIFVPLPKQLPIHRVGHTIDT 116

Query: 2102 SWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARA-RKDSEPPPTVAELTIPPEELKR 1926
            SWSTP +PVP+PGSG  I+R+H L    +V K E    RK  E  P++AELT+PP EL+R
Sbjct: 117  SWSTPSYPVPKPGSGTAISRYHEL---KRVWKKETEMERKKEEKVPSLAELTLPPAELRR 173

Query: 1925 LRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKT 1746
            LR  G+RL K+LKIGKAGITEGIVNGIHERWR +E+VKI CED+ RMNMKRTH++LE KT
Sbjct: 174  LRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKT 233

Query: 1745 GGLVVWRSGSIIILYRGVDYKYPCYFHEDKDKIFNETSLSSGMHNEPTNSQEASLLPMLX 1566
            GGLV+WRSGS I+LYRGV+Y+YP YF  D+D      S +S M     +S+E      + 
Sbjct: 234  GGLVIWRSGSKILLYRGVNYQYP-YFVSDRDLAHEAASGASSMDQGVVDSREKQ---SIA 289

Query: 1565 XXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPL 1386
                              GVGS  K   ++ GE+QL EEADRLL+GLGPRF+DWW   PL
Sbjct: 290  ESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPL 349

Query: 1385 PIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQGLA 1206
            P+D DLLPAVVP +R+PFRLLP+G+ PKLTD EMT ++RLGRPLPCHFALGRN NLQGLA
Sbjct: 350  PVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLA 409

Query: 1205 VSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPL 1026
            V+++KLWEKCE+AKIA+KRGVQNTNS +MAEELK LTGGTL+SRD++F V YRGKDFLP 
Sbjct: 410  VAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPS 469

Query: 1025 VVSSAIEERR-------NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXELKKGSEQKQ 867
             VSSAIEERR       N   +  K   NE  ++   V              +K   Q  
Sbjct: 470  AVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRAVKEDIELEAKD----QKDHIQTH 525

Query: 866  KFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEERY 687
            +      NS    L+    +LS A+ K   + K LA+LE    P+ +++DKE I+ +E+Y
Sbjct: 526  QMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKY 585

Query: 686  MLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXXXE 507
            MLRK+GL+M  FLLLGRRGVFDGT+ENMHLHWKYRELVKII  ++SI+           E
Sbjct: 586  MLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAE 645

Query: 506  SGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLHVL 327
            SGGILVAVE VSKGYAII+YRGKNY RP  LRP TL +KR A+KRS+EAQR +SLKLHVL
Sbjct: 646  SGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVL 705

Query: 326  KFSKKISQVKDDSYVDS 276
            K S  I ++      DS
Sbjct: 706  KLSNNIEELNRQLVEDS 722


>ref|XP_006296749.1| hypothetical protein CARUB_v10015149mg [Capsella rubella]
            gi|482565458|gb|EOA29647.1| hypothetical protein
            CARUB_v10015149mg [Capsella rubella]
          Length = 1021

 Score =  714 bits (1842), Expect = 0.0
 Identities = 395/732 (53%), Positives = 491/732 (67%), Gaps = 22/732 (3%)
 Frame = -3

Query: 2276 QSAIQRISEKLRSLGFLEQHPPSSADDRPTTG----PGSAGEIFIPTPGEILTHRVGYTI 2109
            QSAIQRI+EKLRSLGF+E++  S A  R TTG      S GEIF+P P ++  +RVG+TI
Sbjct: 60   QSAIQRIAEKLRSLGFVEENHESPA--RNTTGVEYGKNSPGEIFVPLPKQLPINRVGHTI 117

Query: 2108 DSSWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARA-RKDSEPPPTVAELTIPPEEL 1932
            D+SWSTP +PVP PGSG  I+R+H L    +V K E    RK  E  P++AELT+P  EL
Sbjct: 118  DTSWSTPSYPVPNPGSGTAISRYHEL---KRVWKKETEIERKKQEKVPSLAELTLPAAEL 174

Query: 1931 KRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILER 1752
            +RLR  G+RL K+LKIGKAGITEGIVNGIHERWR +E+VKI CED+ RMNMKRTH++LE 
Sbjct: 175  RRLRSAGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIVCEDISRMNMKRTHDVLET 234

Query: 1751 KTGGLVVWRSGSIIILYRGVDYKYPCYFHEDKD----KIFNETSLSSGMHNEPTNSQEAS 1584
            KTGGLV+WRSGS I+LYRGV+Y+YP YF  D+D          S  S M  E  +S++  
Sbjct: 235  KTGGLVIWRSGSKILLYRGVNYQYP-YFVSDRDLGHDSSVETASGGSSMDQEVVDSRDKQ 293

Query: 1583 LLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDW 1404
                                  I GVGS  K   ++ GE+QL EEAD+LL+GLGPRF+DW
Sbjct: 294  ---STAESSSLSVTSKTVKPLLIQGVGSPDKVRFQLPGEVQLVEEADQLLEGLGPRFTDW 350

Query: 1403 WGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNT 1224
            W   PLP+D DLLPAVVP +R+PFRLLP+G+ PKLTD EMT ++RLGRPLPCHFALGRN 
Sbjct: 351  WAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNR 410

Query: 1223 NLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRG 1044
            NLQGLAV+++KLWEKCE+AKIA+KRGVQNTNS +MAEELK LTGGTL+SRD++F V YRG
Sbjct: 411  NLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRG 470

Query: 1043 KDFLPLVVSSAIEERR-------NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXELKK 885
            KDFLP  VSSAIEERR       N   +  K   NE++++                E KK
Sbjct: 471  KDFLPFAVSSAIEERRRQTMIMENSSAHGNKMTKNEDVIKPQAA---TDDTELEEAEYKK 527

Query: 884  GSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAI 705
               Q          S    L+    +LS A+ K   + K LAELE+   P+++ +DKE I
Sbjct: 528  DHVQTHHMKSRQRKSPEAILEKTSIKLSMALEKKANAEKILAELESRESPQQSNIDKEGI 587

Query: 704  SEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXX 525
            +++E+YMLRK+GL+M  FLLLGRRGVFDGT+ENMHLHWKYRELVKII  +HSI+      
Sbjct: 588  TDDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEHSIEAAHEVA 647

Query: 524  XXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCES 345
                 ESGGILVAVE VSKGYAII+YRGKNY RP  LRP TL +KR A+KRS+EAQR +S
Sbjct: 648  EILEAESGGILVAVEMVSKGYAIIVYRGKNYERPSCLRPQTLLSKREALKRSVEAQRRKS 707

Query: 344  LKLHVLKFSKKIS----QVKDDSYVDSTVEHMCGLMNDIVGNDSWIMKGQNDQSSGSM-- 183
            LKLHVLK S  I     Q+ +DS  + T       M  +   ++ +++ +N      +  
Sbjct: 708  LKLHVLKLSNNIDELNRQLVEDSVTNETRSDGESSMRMVEETENQLIEPENSSEEIELGY 767

Query: 182  QDKLVVLKDGDE 147
              +L V   G+E
Sbjct: 768  SSELSVSSSGEE 779


>ref|XP_006408495.1| hypothetical protein EUTSA_v10019986mg [Eutrema salsugineum]
            gi|557109641|gb|ESQ49948.1| hypothetical protein
            EUTSA_v10019986mg [Eutrema salsugineum]
          Length = 998

 Score =  712 bits (1839), Expect = 0.0
 Identities = 383/692 (55%), Positives = 476/692 (68%), Gaps = 25/692 (3%)
 Frame = -3

Query: 2276 QSAIQRISEKLRSLGFLEQ-HPPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDSS 2100
            QSAIQRI++KLRSLGF E+ H   +  +   +G  S GEIF+P P ++  HRVG+TID+S
Sbjct: 59   QSAIQRIADKLRSLGFAEEKHDTKTTGEE--SGNNSPGEIFVPLPNQLPIHRVGHTIDTS 116

Query: 2099 WSTPEHPVPQPGSGVTINRFHHL---WTRDKVRKAEARARKDSEPPPTVAELTIPPEELK 1929
            WSTP +PVP+PGSG  I+R+H L   W ++K  K E   RK+ E  P++AELT+PP EL+
Sbjct: 117  WSTPSYPVPKPGSGTAISRYHELKRVWKKEK--KVE---RKNEEKVPSLAELTLPPAELR 171

Query: 1928 RLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERK 1749
            RLR  G+RL K+LKIGKAGITEGIVNGIHERWR +E+VKI CED+ RMNMKRTH++LE K
Sbjct: 172  RLRSAGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETK 231

Query: 1748 TGGLVVWRSGSIIILYRGVDYKYPCYFHEDKDK------------------IFNETSLSS 1623
            TGGLV+WRSGS I+LYRGV+Y+YP YF  D+D                   + +     S
Sbjct: 232  TGGLVIWRSGSKILLYRGVNYQYP-YFVSDQDLAHDSSVETASGASSMIQGVVDSRDKQS 290

Query: 1622 GMHNEPTNSQEASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEAD 1443
               + PT+     + P+L                 + GVGS  K   ++ GE+QL EEAD
Sbjct: 291  TAQSSPTSISNKMIKPLL-----------------MQGVGSPDKVRFQLPGEVQLVEEAD 333

Query: 1442 RLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLG 1263
            RLL+GLGPRF+DWW   PLP+DADLLPA+VP +R+PFRLLP+G+ PKLTD EMT L+RLG
Sbjct: 334  RLLEGLGPRFTDWWAYDPLPVDADLLPAIVPEYRRPFRLLPYGLSPKLTDDEMTTLRRLG 393

Query: 1262 RPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTL 1083
            RPLPCHFALGRN NLQGLAV+++KLWEKCE+ KIA+KRGVQNTNS +MAEELK LTGGTL
Sbjct: 394  RPLPCHFALGRNRNLQGLAVAIVKLWEKCEVVKIAVKRGVQNTNSELMAEELKWLTGGTL 453

Query: 1082 LSRDREFFVFYRGKDFLPLVVSSAIEERRNKGNNRPKRITNENLV---EALVVXXXXXXX 912
            +SRD++F V YRGKDFLP  VSSAIEERR +     K   + N +   E  +        
Sbjct: 454  ISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMEKSSVHGNKLTKNEKEIQPQAPTDD 513

Query: 911  XXXXXELKKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPK 732
                 E KK   Q  +       S   +L+    +LS A+ K   + K LAELE    P+
Sbjct: 514  IEPAAEYKKDHVQTHQMKPRQRKSPEASLERTSIKLSMALEKKANAEKILAELENRESPQ 573

Query: 731  ETELDKEAISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDH 552
            ++++DKE I+++E+YMLRK+GL+M  FLLLGRRGVFDGT+ENMHLHWKYRELVKII  + 
Sbjct: 574  QSDIDKEGITDDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEK 633

Query: 551  SIKXXXXXXXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKR 372
            SI+           ESGGILVAVE VSKGYAII+YRGKNY RP  LRP TL +KR A+KR
Sbjct: 634  SIESAREVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPPCLRPQTLLSKREALKR 693

Query: 371  SLEAQRCESLKLHVLKFSKKISQVKDDSYVDS 276
            S+EAQR +SLKLHVLK S  I ++      DS
Sbjct: 694  SVEAQRRKSLKLHVLKLSDNIEELNRQLVKDS 725


>ref|XP_004232267.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Solanum lycopersicum]
          Length = 1049

 Score =  712 bits (1839), Expect = 0.0
 Identities = 405/797 (50%), Positives = 511/797 (64%), Gaps = 26/797 (3%)
 Frame = -3

Query: 2372 PSPRCAL----PSQNPRK--PLKGXXXXXXXXXXXTVSQSAIQRISEKLRSLGFLEQHPP 2211
            PSP  +L    PS +P+   P               + +SAI+RI++KLRSLGF+EQ   
Sbjct: 20   PSPSHSLFSSTPSLSPKPFFPRDSLPVFAASPDTEALPESAIRRIADKLRSLGFVEQPKN 79

Query: 2210 SSADDRPTTG---PGSAGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRF 2040
                +   +      S G+IF+P P ++  +RVG+T+D+SWSTPE+PVPQPG G +I +F
Sbjct: 80   QETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLDTSWSTPENPVPQPGLGKSIQKF 139

Query: 2039 HHLWTRDKVRKAEARARKDS-----EPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKA 1875
            H L  RD+  K + + R  +     E  P++AELT+P EEL+RLR  G+ L K+LKIGKA
Sbjct: 140  HEL--RDEFLKEKDKERLKNKEYKKERAPSLAELTLPAEELRRLRTVGIALRKKLKIGKA 197

Query: 1874 GITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRG 1695
            GITEGIVNGIHERWRR ELVKI CED+CR+NMKRTHE+LE+KTGGLV+WRSGS IILYRG
Sbjct: 198  GITEGIVNGIHERWRRIELVKITCEDICRLNMKRTHELLEKKTGGLVIWRSGSNIILYRG 257

Query: 1694 VDYKYPCYFHEDKDKIFNETS-------LSSGMHNEPTNSQEASLLPMLXXXXXXXXXXX 1536
             DYKYP YF E+    F   S       L  G     TNS     +              
Sbjct: 258  ADYKYP-YFSENS---FENNSAQDANPDLFMGAEEHMTNSSGIDAVKS-------DASDR 306

Query: 1535 XXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAV 1356
                  I GVGS  +   ++ GE +  EEAD+LL+GLGPRF+DWWGC PLPIDADLLPA+
Sbjct: 307  KSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLGPRFTDWWGCEPLPIDADLLPAI 366

Query: 1355 VPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKC 1176
            VPG+++PFRLLP+G+KPKLT+ EMT L+RLGRPLPCHF LGRN  LQGLA +++KLWEKC
Sbjct: 367  VPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFVLGRNRKLQGLAAAIVKLWEKC 426

Query: 1175 EIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERR 996
            EIAK+A+KRGVQNTNS +M EELK LTGGTLLSRDREF VFYRGKDFLP  VSSAIEERR
Sbjct: 427  EIAKVAVKRGVQNTNSELMVEELKWLTGGTLLSRDREFIVFYRGKDFLPSAVSSAIEERR 486

Query: 995  NKGNNRPKRI-TNENLVEA----LVVXXXXXXXXXXXXELKKGSEQKQKFALEGTNSENF 831
             +     KR   N ++  A                     +KG ++K+K       S   
Sbjct: 487  KQVFEEEKRNGFNSSVANAKERKQSTTESVSDDGHAHRNNQKGVQEKKKL-----TSMEA 541

Query: 830  ALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEERYMLRKVGLRMNAF 651
            A++   ++L+ A+ K   + K L ELE    P+++++DKE I+EEER+MLRK+GLRM  F
Sbjct: 542  AIKRTADKLTTALEKKAEAEKLLLELEEDEVPQQSDMDKEGITEEERFMLRKIGLRMKPF 601

Query: 650  LLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXXXESGGILVAVERVS 471
            LLLGRRGVFDGTVENMHLHWKYRELVK+I+   +I+           ESGGILVAVERV+
Sbjct: 602  LLLGRRGVFDGTVENMHLHWKYRELVKVITGRKNIEEVHQIARMLEAESGGILVAVERVN 661

Query: 470  KGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLHVLKFSKKISQVKDD 291
            KGYAII+YRGKNY RP  LRP TL +KR AMKRS+EAQR +SLKLHVLK ++ I  ++  
Sbjct: 662  KGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLHVLKLTQNIEALQSR 721

Query: 290  SYVDSTVEHMCGLMNDIVGNDSWIMKGQNDQSSGSMQDKLVVLKDGDECSKLEVAIPSSA 111
               +  + H+     DIV     +M G +D + G+    +V     D     E   PSS 
Sbjct: 722  LAKNEEISHI--QSPDIVDRQVPVM-GISDAAGGTNYQSIVASPIEDSGDAAEDTDPSSQ 778

Query: 110  VVDENKLAKQSYEVPSE 60
                N  +   ++   E
Sbjct: 779  KELSNDFSDTDHDSQQE 795


>gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
          Length = 1020

 Score =  707 bits (1825), Expect = 0.0
 Identities = 383/686 (55%), Positives = 469/686 (68%), Gaps = 19/686 (2%)
 Frame = -3

Query: 2276 QSAIQRISEKLRSLGFLEQH--PPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDS 2103
            QSAIQRI+EKLRSLGF+E+    P+       +G  S GEIF+P P ++  HRVG+TID+
Sbjct: 57   QSAIQRIAEKLRSLGFVEEKHDSPTRRITGEESGKNSPGEIFVPLPKQLPIHRVGHTIDT 116

Query: 2102 SWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARA-RKDSEPPPTVAELTIPPEELKR 1926
            SWSTP +PVP+PGSG  I+R+H L    +V K E    RK  E  P++AELT+PP EL+R
Sbjct: 117  SWSTPSYPVPKPGSGTAISRYHEL---KRVWKKETEMERKKEEKVPSLAELTLPPAELRR 173

Query: 1925 LRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKT 1746
            LR  G+RL K+LKIGKAGITEGIVNGIHERWR +E+VKI CED+ RMNMKRTH++LE KT
Sbjct: 174  LRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKT 233

Query: 1745 GGLVVWRSGSIIILYRGVDYKYPCYFHEDKDKIFNETSLSSGMHNEPTNSQEASLLPMLX 1566
            GGLV+WRSGS I+LYRGV+Y+YP YF  D+D      S +S M     +S+E      + 
Sbjct: 234  GGLVIWRSGSKILLYRGVNYQYP-YFVSDRDLAHEAASGASSMDQGVVDSREKQ---SIA 289

Query: 1565 XXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPL 1386
                              GVGS  K   ++ GE+QL EEADRLL+GLGPRF+DWW   PL
Sbjct: 290  ESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPL 349

Query: 1385 PIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQGLA 1206
            P+D DLLPAVVP +R+PFRLLP+G+ PKLTD EMT ++RLGRPLPCHFALGRN NLQGLA
Sbjct: 350  PVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLA 409

Query: 1205 VSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEEL---------KQLTGGTLLSRDREFFVF 1053
            V+++KLWEKCE+AKIA+KRGVQNTNS +MAEEL         K LTGGTL+SRD++F V 
Sbjct: 410  VAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKVVGLLLVIKWLTGGTLISRDKDFIVL 469

Query: 1052 YRGKDFLPLVVSSAIEERR-------NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXE 894
            YRGKDFLP  VSSAIEERR       N   +  K   NE  ++   V             
Sbjct: 470  YRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRAVKEDIELEAKD--- 526

Query: 893  LKKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDK 714
             +K   Q  +      NS    L+    +LS A+ K   + K LA+LE    P+ +++DK
Sbjct: 527  -QKDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDK 585

Query: 713  EAISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXX 534
            E I+ +E+YMLRK+GL+M  FLLLGRRGVFDGT+ENMHLHWKYRELVKII  ++SI+   
Sbjct: 586  EGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAH 645

Query: 533  XXXXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQR 354
                    ESGGILVAVE VSKGYAII+YRGKNY RP  LRP TL +KR A+KRS+EAQR
Sbjct: 646  KVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQR 705

Query: 353  CESLKLHVLKFSKKISQVKDDSYVDS 276
             +SLKLHVLK S  I ++      DS
Sbjct: 706  RKSLKLHVLKLSNNIEELNRQLVEDS 731


>ref|XP_006338519.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Solanum tuberosum]
          Length = 878

 Score =  703 bits (1814), Expect = 0.0
 Identities = 391/741 (52%), Positives = 494/741 (66%), Gaps = 20/741 (2%)
 Frame = -3

Query: 2276 QSAIQRISEKLRSLGFLEQHPPSSADDRPTTG---PGSAGEIFIPTPGEILTHRVGYTID 2106
            +SAI+RI++KLRSLGF+E+       +   +      S G+IF+P P ++  +RVG+T+D
Sbjct: 58   ESAIRRIADKLRSLGFVEEPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLD 117

Query: 2105 SSWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARARKDS-----EPPPTVAELTIPP 1941
            +SWSTPE+PVPQPG G +I +FH L  RD+  K + + R  +     E  P++AELT+P 
Sbjct: 118  TSWSTPENPVPQPGLGNSIQKFHEL--RDEFLKEKEKERLKNKEYKKERAPSLAELTLPA 175

Query: 1940 EELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEI 1761
            EEL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWRR ELVKI CED+CR+NMKRTHE+
Sbjct: 176  EELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRMELVKITCEDICRLNMKRTHEL 235

Query: 1760 LERKTGGLVVWRSGSIIILYRGVDYKYPCYFHE---DKDKIFNET-SLSSGMHNEPTNSQ 1593
            LE+KTGGLV+WRSGS IILYRG DYKYP YF E   + +   + T  L  G     TNS 
Sbjct: 236  LEKKTGGLVIWRSGSNIILYRGADYKYP-YFSEISFENNSAQDATPDLFMGTEEHMTNSS 294

Query: 1592 EASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRF 1413
               ++                    I GVGS  +   ++ GE +  EEAD+LL+GLGPRF
Sbjct: 295  GTDVVK-------PDASDRKSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLGPRF 347

Query: 1412 SDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALG 1233
            +DWWGC PLPIDADLLPA+VPG+++PFRLLP+G+KPKLT+ EMT L+RLGRPLPCHF LG
Sbjct: 348  TDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFVLG 407

Query: 1232 RNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVF 1053
            RN  LQGLA +++KLWEKCEIAK+A+KRGVQNTNS +MAEELK LTGGTLLSRDREF VF
Sbjct: 408  RNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDREFIVF 467

Query: 1052 YRGKDFLPLVVSSAIEERRNKGNNRPKRITNENLVEALVVXXXXXXXXXXXXELKKGSEQ 873
            YRGKDFLP  VSSAIEERR +     KR    + V                    + + Q
Sbjct: 468  YRGKDFLPSAVSSAIEERRKQVFEEEKRNGFNSSVANAKERKQSTTGSVSDDGHARRNNQ 527

Query: 872  KQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEE 693
            K     +   S   A++   ++L+ A+ K   +   L ELE    P+++++DKE I+EEE
Sbjct: 528  KGVQEKKKLTSMEAAIKRTADKLTTALEKKAEAENLLLELEEDEVPQQSDMDKEGITEEE 587

Query: 692  RYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXX 513
            R+MLRK+GLRM  FLLLGRRGVFDGTVENMHLHWKYRELVK+I+   +I+          
Sbjct: 588  RFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKTIEEVHQIARMLE 647

Query: 512  XESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLH 333
             ESGGILVAVE V+KG+AII+YRGKNY RP  LRP TL +KR AMKRS+EAQR +SLKLH
Sbjct: 648  AESGGILVAVELVNKGHAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLH 707

Query: 332  VLKFSKKISQVKDDSYVDSTVEHMCGLMNDIVGND------SWIMKGQNDQSSGS--MQD 177
            VLK ++ I  ++     +  + H+     DIV         S    G N QSS +   +D
Sbjct: 708  VLKLTQNIEALQSRLAKNEEMVHI--QSPDIVDRQVPVTGISDAAGGTNYQSSSASPTED 765

Query: 176  KLVVLKDGDECSKLEVAIPSS 114
                 +D D  S+ E++  SS
Sbjct: 766  SGDAAEDTDPSSQKELSSDSS 786


>ref|XP_006338518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Solanum tuberosum]
          Length = 1049

 Score =  703 bits (1814), Expect = 0.0
 Identities = 391/741 (52%), Positives = 494/741 (66%), Gaps = 20/741 (2%)
 Frame = -3

Query: 2276 QSAIQRISEKLRSLGFLEQHPPSSADDRPTTG---PGSAGEIFIPTPGEILTHRVGYTID 2106
            +SAI+RI++KLRSLGF+E+       +   +      S G+IF+P P ++  +RVG+T+D
Sbjct: 58   ESAIRRIADKLRSLGFVEEPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLD 117

Query: 2105 SSWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARARKDS-----EPPPTVAELTIPP 1941
            +SWSTPE+PVPQPG G +I +FH L  RD+  K + + R  +     E  P++AELT+P 
Sbjct: 118  TSWSTPENPVPQPGLGNSIQKFHEL--RDEFLKEKEKERLKNKEYKKERAPSLAELTLPA 175

Query: 1940 EELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEI 1761
            EEL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWRR ELVKI CED+CR+NMKRTHE+
Sbjct: 176  EELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRMELVKITCEDICRLNMKRTHEL 235

Query: 1760 LERKTGGLVVWRSGSIIILYRGVDYKYPCYFHE---DKDKIFNET-SLSSGMHNEPTNSQ 1593
            LE+KTGGLV+WRSGS IILYRG DYKYP YF E   + +   + T  L  G     TNS 
Sbjct: 236  LEKKTGGLVIWRSGSNIILYRGADYKYP-YFSEISFENNSAQDATPDLFMGTEEHMTNSS 294

Query: 1592 EASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRF 1413
               ++                    I GVGS  +   ++ GE +  EEAD+LL+GLGPRF
Sbjct: 295  GTDVVK-------PDASDRKSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLGPRF 347

Query: 1412 SDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALG 1233
            +DWWGC PLPIDADLLPA+VPG+++PFRLLP+G+KPKLT+ EMT L+RLGRPLPCHF LG
Sbjct: 348  TDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFVLG 407

Query: 1232 RNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVF 1053
            RN  LQGLA +++KLWEKCEIAK+A+KRGVQNTNS +MAEELK LTGGTLLSRDREF VF
Sbjct: 408  RNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDREFIVF 467

Query: 1052 YRGKDFLPLVVSSAIEERRNKGNNRPKRITNENLVEALVVXXXXXXXXXXXXELKKGSEQ 873
            YRGKDFLP  VSSAIEERR +     KR    + V                    + + Q
Sbjct: 468  YRGKDFLPSAVSSAIEERRKQVFEEEKRNGFNSSVANAKERKQSTTGSVSDDGHARRNNQ 527

Query: 872  KQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEE 693
            K     +   S   A++   ++L+ A+ K   +   L ELE    P+++++DKE I+EEE
Sbjct: 528  KGVQEKKKLTSMEAAIKRTADKLTTALEKKAEAENLLLELEEDEVPQQSDMDKEGITEEE 587

Query: 692  RYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXX 513
            R+MLRK+GLRM  FLLLGRRGVFDGTVENMHLHWKYRELVK+I+   +I+          
Sbjct: 588  RFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKTIEEVHQIARMLE 647

Query: 512  XESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLH 333
             ESGGILVAVE V+KG+AII+YRGKNY RP  LRP TL +KR AMKRS+EAQR +SLKLH
Sbjct: 648  AESGGILVAVELVNKGHAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLH 707

Query: 332  VLKFSKKISQVKDDSYVDSTVEHMCGLMNDIVGND------SWIMKGQNDQSSGS--MQD 177
            VLK ++ I  ++     +  + H+     DIV         S    G N QSS +   +D
Sbjct: 708  VLKLTQNIEALQSRLAKNEEMVHI--QSPDIVDRQVPVTGISDAAGGTNYQSSSASPTED 765

Query: 176  KLVVLKDGDECSKLEVAIPSS 114
                 +D D  S+ E++  SS
Sbjct: 766  SGDAAEDTDPSSQKELSSDSS 786


>ref|XP_004297960.1| PREDICTED: uncharacterized protein LOC101297928 [Fragaria vesca
            subsp. vesca]
          Length = 1169

 Score =  703 bits (1814), Expect = 0.0
 Identities = 382/701 (54%), Positives = 481/701 (68%), Gaps = 9/701 (1%)
 Frame = -3

Query: 2369 SPRCALPSQNPRKPLKGXXXXXXXXXXXTVSQSAIQRISEKLRSLGFLEQHPPSSADDRP 2190
            SP  + P   P KP +              + SAIQRI+EKLRSLGF E +  +  D +P
Sbjct: 24   SPFFSFPK--PPKPSQFTIRSSAADSKTLAANSAIQRIAEKLRSLGFTEDN--NKPDSKP 79

Query: 2189 TTGPGSAGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRFHHLWTR---- 2022
              GP SAGEIF+P P  +  +RVG+TID SWSTPE PVP PG+G  I+RFH +       
Sbjct: 80   --GPSSAGEIFVPLPETLPKYRVGHTIDPSWSTPEKPVPAPGTGRAISRFHEMRRELKRL 137

Query: 2021 DKVRKAEAR--ARKDSEPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKAGITEGIVNG 1848
            ++V + E +   +K  E  PT+AE+++   EL+RLR  G+ L+K++++GKAGITEGIVNG
Sbjct: 138  EEVEEMERKKEGKKKEEKVPTLAEMSLSTAELRRLRTVGIELKKKVRVGKAGITEGIVNG 197

Query: 1847 IHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRGVDYKYPCYF 1668
            IHE WRRSE+VK+ CEDLCR+NMKRTH++LERKTGGLVVWRSG+ IILYRGV+YKYP YF
Sbjct: 198  IHENWRRSEVVKLVCEDLCRLNMKRTHDLLERKTGGLVVWRSGAKIILYRGVNYKYP-YF 256

Query: 1667 HEDKDKIFNETSLSSGMHNEPTNSQEASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKA 1488
             + K +  + +  S         + EA+ +                  + I GVG + + 
Sbjct: 257  LKGKKREDSTSDDSGDAVVNAGGTDEANSVT------GPSPTDEKTQPALIQGVGLANRF 310

Query: 1487 HQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIK 1308
              ++ GE +L EEADR+L+GLGPRF+DWWG  PLP+D DLLPAVVPG+RKPFRLLP+G++
Sbjct: 311  RFQLPGEAELAEEADRMLEGLGPRFNDWWGYEPLPVDGDLLPAVVPGYRKPFRLLPYGLQ 370

Query: 1307 PKLTDREMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNS 1128
            PKLTD EMT ++RL RPLP HFALGRN  LQGLA S++KLWEKCEIAK+A+KRGVQNTN 
Sbjct: 371  PKLTDDEMTTIRRLARPLPTHFALGRNRKLQGLATSIVKLWEKCEIAKVAVKRGVQNTNC 430

Query: 1127 VMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERRNK---GNNRPKRITNE 957
             +MAEELK+LTGGTL++RD+EF V YRGKDFLP  VSSAIEERR      +NR +++   
Sbjct: 431  ELMAEELKRLTGGTLIARDKEFIVLYRGKDFLPPAVSSAIEERRKAVMYADNRSRKLR-- 488

Query: 956  NLVEALVVXXXXXXXXXXXXELKKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEM 777
              + A               +   G    +K  L+ T +      I   +LS A+ K E 
Sbjct: 489  --ISATTAQDHESRTELETKDDLTGGLPSEKRKLKSTEAAASRASI---KLSMALEKREK 543

Query: 776  SRKRLAELETSVKPKETELDKEAISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHL 597
            + K LAELE +  P++ E+DKE I+EEERYMLRKVGL+M  FLL+GRRGVFDGT+ENMHL
Sbjct: 544  AEKLLAELEKAESPQQPEIDKEGITEEERYMLRKVGLKMKPFLLMGRRGVFDGTIENMHL 603

Query: 596  HWKYRELVKIISKDHSIKXXXXXXXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVI 417
            HWKYRELVKII  + SI+           ESGGILVAVERVSKGYAII+YRGKNY RP  
Sbjct: 604  HWKYRELVKIICNEKSIESAHQVAQTLESESGGILVAVERVSKGYAIIVYRGKNYIRPAN 663

Query: 416  LRPTTLPNKRVAMKRSLEAQRCESLKLHVLKFSKKISQVKD 294
            LRP TL  KR A+KRS+EAQR ESLKLHVLK +K I ++++
Sbjct: 664  LRPQTLLTKREALKRSIEAQRRESLKLHVLKLNKNIDELEE 704


>ref|XP_006849108.1| hypothetical protein AMTR_s00028p00245370 [Amborella trichopoda]
            gi|548852581|gb|ERN10689.1| hypothetical protein
            AMTR_s00028p00245370 [Amborella trichopoda]
          Length = 1042

 Score =  700 bits (1806), Expect = 0.0
 Identities = 400/762 (52%), Positives = 499/762 (65%), Gaps = 17/762 (2%)
 Frame = -3

Query: 2282 VSQSAIQRISEKLRSLGFLEQHPPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDS 2103
            VS++AIQRI+EKL+SLG++E+   S       TGPGS GEIFIP    +   RVG T+D 
Sbjct: 59   VSKTAIQRIAEKLKSLGYVEELNDSEPQ---CTGPGSPGEIFIPRLENLAKIRVGSTLDK 115

Query: 2102 SWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARARKDSEPPPTVAELTIPPEELKRL 1923
            SWSTPE+PVP+PGSG  I+RFH L  R + +K   +  + S P  ++AEL IP  EL+RL
Sbjct: 116  SWSTPENPVPEPGSGSAISRFHVL--RKEAKKNAVKGERGSAP--SLAELRIPEAELQRL 171

Query: 1922 RREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG 1743
            R  G+ LEK+L +GK G+TEGIVNGIHERWRRSELVKIKC+DL  +NMKRTHEILE KTG
Sbjct: 172  RSIGICLEKKLIVGKPGVTEGIVNGIHERWRRSELVKIKCQDLSMVNMKRTHEILETKTG 231

Query: 1742 GLVVWRSGSIIILYRGVDYKYPCYFHEDKDKIFNE-----TSLSSGMHNEPTNSQEASLL 1578
            G+V+ RSGSIIILYRG +Y YP YF   +D   NE     +  SS ++   +N +  +  
Sbjct: 232  GIVICRSGSIIILYRGANYTYP-YFVAGEDLSENEDIHEVSFKSSVVYGSGSNEENKTNS 290

Query: 1577 PMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWG 1398
                              S ++GVGS  K   ++ GE QL++EADRLLDGLGPRF+DWWG
Sbjct: 291  LPRVGGISAVEATQITGRSIVLGVGSPNKVRFQLPGERQLDKEADRLLDGLGPRFTDWWG 350

Query: 1397 CAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNL 1218
              PLP+DADLLPA V G+RKPFRLLP+G+KPKLTD EMT L+RLGRPLPCHFALGRN NL
Sbjct: 351  YGPLPVDADLLPATVSGYRKPFRLLPYGVKPKLTDSEMTTLRRLGRPLPCHFALGRNRNL 410

Query: 1217 QGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKD 1038
            QGLA S+++LWEKCEIAKIA+KRGVQNTNS +MAEELK+LTGGTLLSRDREF VFYRGKD
Sbjct: 411  QGLATSIVRLWEKCEIAKIAVKRGVQNTNSELMAEELKRLTGGTLLSRDREFIVFYRGKD 470

Query: 1037 FLPLVVSSAIEERRNKGNNRPKRITNENL---VEALV---VXXXXXXXXXXXXELKKGSE 876
            FLP  VSSAIEERR     R +   N NL    +A +   V            +L    E
Sbjct: 471  FLPPAVSSAIEERRTVDVLRKQLKGNRNLDLSSQASLGYDVRLVKTTSDAELQDLNNQDE 530

Query: 875  QKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEE 696
            +K           N A++ ++ +LS+A+ K +M+ ++LAELE+  +  + ++DKE I+EE
Sbjct: 531  EKLSKDQLKPMKVNVAMKRLDWKLSEALEKKQMAERKLAELESKAELSKPDIDKEGITEE 590

Query: 695  ERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXX 516
            ERYMLRKVGLRM AFLLLGRRGVFDGT+ENMHLHWKYREL+KIISKD SI          
Sbjct: 591  ERYMLRKVGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELIKIISKDRSIAEVHHAARTL 650

Query: 515  XXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKL 336
              ESGGILV+VE V+KG+AII+YRGKNY+RP  LRP  L NKR AMK SLEAQR E+   
Sbjct: 651  EAESGGILVSVETVNKGHAIIVYRGKNYQRPDNLRPQNLLNKREAMKHSLEAQRREAKDD 710

Query: 335  HVLKFSKKISQVKDDSYVDSTVEHMCGLMN------DIVGNDSWIMKGQNDQSSGSMQDK 174
             V+        +   +      EH  G ++      D+   D+     Q    S S  D+
Sbjct: 711  RVVASPHSTRYLGSSNCELGNTEHTLGSLDYSNHFKDMENGDA----SQGPLHSSSSDDE 766

Query: 173  LVVLKDGDECSKLEVAIPSSAVVDENKLAKQSYEVPSETSTA 48
             VV            A  +  VV + +  +   + P + S++
Sbjct: 767  DVVTPSNGVRWSTSYADDAQQVVVKRRFPRDFEKSPKDVSSS 808


>gb|EOY02282.1| CRM family member 2, putative isoform 2 [Theobroma cacao]
          Length = 1045

 Score =  700 bits (1806), Expect = 0.0
 Identities = 378/689 (54%), Positives = 472/689 (68%), Gaps = 17/689 (2%)
 Frame = -3

Query: 2276 QSAIQRISEKLRSLGFLEQHPPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDSSW 2097
            QSAIQRI++KLRSLGF E   P   +  P +G  S GEIF+P P +I  +RVG+TID+SW
Sbjct: 59   QSAIQRIADKLRSLGFSETQNPEP-ESEPGSGSDSPGEIFVPLPEKIPKYRVGHTIDTSW 117

Query: 2096 STPEHPVPQPGSGV--TINRFHHLWTRDKVRKAEARARKDSEPPPTVAELTIPPEELKRL 1923
            STPE+PVP PGSG    + RF  +    + R+   R +++    P++AEL +   EL+RL
Sbjct: 118  STPENPVPDPGSGPGSLMARFREM---KRERRKVGRVKEEDRAVPSLAELKLSAAELRRL 174

Query: 1922 RREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG 1743
            R  G+  +++LK+GKAGITEGIVNGIHERWRRSE+VKI CED+C+MNMKRTHE+LERKTG
Sbjct: 175  RTVGIGEKRKLKLGKAGITEGIVNGIHERWRRSEVVKIVCEDICKMNMKRTHEVLERKTG 234

Query: 1742 GLVVWRSGSIIILYRGVDYKYPCYFHEDK---DKIFNETSLSSGMHNEPTNSQEASLLPM 1572
            GLVVWRSGS IILYRG +Y+YP YF  DK   D   +  S  + M N   +  E+    +
Sbjct: 235  GLVVWRSGSKIILYRGANYRYP-YFLADKIATDDTSSNASPDTNMDNVELHETESCSSEI 293

Query: 1571 LXXXXXXXXXXXXXXXSFIV-GVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGC 1395
                              IV GVGS  +   ++ GE +L EEA+ LLDGLGPRF+DWWG 
Sbjct: 294  NSAKTAIPNATNKMTKPMIVQGVGSPSRVRFQLPGEAELVEEANHLLDGLGPRFTDWWGY 353

Query: 1394 APLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQ 1215
             PLP+D DLLPA++PG+R+PFRLLP+G+KP LT+ EMT L+RLGRPLPCHF LGRN  LQ
Sbjct: 354  EPLPVDGDLLPAIIPGYRRPFRLLPYGVKPILTNDEMTTLRRLGRPLPCHFVLGRNRKLQ 413

Query: 1214 GLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKDF 1035
            GLA S++K WEKCEIAK+A+KRGVQNTNS +MAEELK LTGGTLLSRD++F V YRGKDF
Sbjct: 414  GLAASIVKHWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIVLYRGKDF 473

Query: 1034 LPLVVSSAIEERR---------NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXELKKG 882
            LP  VSSAIEERR             ++ K+   E +VE                ++   
Sbjct: 474  LPSAVSSAIEERRRHVIHVEKQGAECSKSKKTAQEVIVE--------DTKSGSESKINSA 525

Query: 881  SEQKQKFALEGTN--SENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEA 708
             +Q+  F  +  N  S   A++  + +LS A+ K   + K LAELE +  P+++E+DKE 
Sbjct: 526  KDQRSNFFGDPKNMKSAEAAIRKTDVKLSMALEKKAKAEKLLAELEQAEIPQQSEIDKEG 585

Query: 707  ISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXX 528
            I++EERYMLRKVGLRM  FLLLGRRGVFDGTVENMHLHWKYRELVKIISK+ +++     
Sbjct: 586  ITQEERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQL 645

Query: 527  XXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCE 348
                  ESGGILVAVERVSKGYAII+YRGKNY RP  LRP TL  KR AMKRSLE QR +
Sbjct: 646  ARMLEAESGGILVAVERVSKGYAIIVYRGKNYERPTSLRPQTLLTKRQAMKRSLEEQRRK 705

Query: 347  SLKLHVLKFSKKISQVKDDSYVDSTVEHM 261
            SLKLH+L  ++ ++ ++    VD     M
Sbjct: 706  SLKLHILNLTRNVNDLEHQLVVDKEANSM 734


>ref|XP_006431007.1| hypothetical protein CICLE_v10013715mg [Citrus clementina]
            gi|557533064|gb|ESR44247.1| hypothetical protein
            CICLE_v10013715mg [Citrus clementina]
          Length = 1062

 Score =  698 bits (1801), Expect = 0.0
 Identities = 387/678 (57%), Positives = 465/678 (68%), Gaps = 19/678 (2%)
 Frame = -3

Query: 2273 SAIQRISEKLRSLGFLEQHPPSSADDR-----PTTGPGSAGEIFIPTPGEILTHRVGYTI 2109
            SAIQRI++KLRSLG +EQ   +S DD       T    +AGEIFIP P  I  +RVG+TI
Sbjct: 66   SAIQRIADKLRSLGIVEQ--TTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTI 123

Query: 2108 DSSWSTPEHPVPQPGSGVTINRFHHLWT---RDKVRKAEARARKDSEPPPTVAELTIPPE 1938
            D SWSTPE+PVP PG+G  I R++ L     R K     ++  +  +  PT+AEL +  +
Sbjct: 124  DDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183

Query: 1937 ELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1758
            EL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWR +E+VKI CEDLCR+NMKRTH+ L
Sbjct: 184  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243

Query: 1757 ERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDK-------DKIFNETSLSSGMHNEPTN 1599
            ERKTGGLVVWRSGS IILYRG DYKYP +  ++        D + N+     G+    T+
Sbjct: 244  ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTH 303

Query: 1598 SQEASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGP 1419
            S  A                     + I  VGS  K   ++ GE +L EEADRLLDGLGP
Sbjct: 304  SSGADSAK----PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGP 359

Query: 1418 RFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFA 1239
            RF+DWWG  P P+DADLLPA VPG+R+PFRLLP+G++PKLT+ EMT L+RLGRPLPCHFA
Sbjct: 360  RFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFA 419

Query: 1238 LGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFF 1059
            LGRN NLQGLA +++KLWEKCEIAKIA+KRG QNTNS MMA+ELK+LTGGTLLSRDREF 
Sbjct: 420  LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479

Query: 1058 VFYRGKDFLPLVVSSAIEERR----NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXEL 891
            VFYRGKDFLP   SSAIEERR    +  N+  +     N  +                  
Sbjct: 480  VFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQTS 539

Query: 890  KKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKE 711
               SEQK++       S   A++    RLS+A+ K   + K LAELE   +P++ E+DKE
Sbjct: 540  TMHSEQKER------RSAEVAIRRTSIRLSRALEKKAEAEKLLAELEEE-RPEQYEVDKE 592

Query: 710  AISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXX 531
             I+EEERYMLRKVGLRM AFLL+GRRGVFDGTVENMHLHWK+RELVKIISK   I+    
Sbjct: 593  GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652

Query: 530  XXXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRC 351
                   ESGGILVAVERV+KGYAII+YRGKNY RP  LRP TL  KR AMKRSLEAQR 
Sbjct: 653  EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712

Query: 350  ESLKLHVLKFSKKISQVK 297
            +SLKLHVL+ ++ I ++K
Sbjct: 713  QSLKLHVLELTRNIEKLK 730


>ref|XP_006482481.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X6 [Citrus sinensis]
          Length = 1031

 Score =  692 bits (1785), Expect = 0.0
 Identities = 384/678 (56%), Positives = 463/678 (68%), Gaps = 19/678 (2%)
 Frame = -3

Query: 2273 SAIQRISEKLRSLGFLEQHPPSSADDR-----PTTGPGSAGEIFIPTPGEILTHRVGYTI 2109
            SAIQRI++KLRSLG +EQ   +S DD       T    +AGEIFIP P  I  +RVG+TI
Sbjct: 66   SAIQRIADKLRSLGIVEQ--TTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTI 123

Query: 2108 DSSWSTPEHPVPQPGSGVTINRFHHLWT---RDKVRKAEARARKDSEPPPTVAELTIPPE 1938
            D SWSTPE+P+P PG+G  I R++ L     R K     ++  +  +  PT+AEL +  +
Sbjct: 124  DDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183

Query: 1937 ELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1758
            EL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWR +E+VKI CEDLCR+NMKRTH+ L
Sbjct: 184  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243

Query: 1757 ERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDK-------DKIFNETSLSSGMHNEPTN 1599
            ERKTGGLVVWRSGS IILYRG DYKYP +  ++        D + N+     G+    T+
Sbjct: 244  ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTH 303

Query: 1598 SQEASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGP 1419
            S  A                     + I  VGS  K   ++ GE +L EEADRLLDGLGP
Sbjct: 304  SSGADSAK----PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGP 359

Query: 1418 RFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFA 1239
            RF+DWWG  P P+DADLL A VPG+R+PFRLLP+G++PKLT+ EMT L+RLGRPLPCHFA
Sbjct: 360  RFTDWWGYDPQPVDADLLSATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFA 419

Query: 1238 LGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFF 1059
            LGRN NLQGLA +++KLWEKCEIAKIA+KRG QNTNS MMA+ELK+LTGGTLLSRDREF 
Sbjct: 420  LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479

Query: 1058 VFYRGKDFLPLVVSSAIEERR----NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXEL 891
            VFYRGKDFLP   S AIEERR    +  N+  +     N  +                + 
Sbjct: 480  VFYRGKDFLPPAASCAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS 539

Query: 890  KKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKE 711
               SEQK++       S   A++    RLS+A+ K   + K LAELE    P++ E+DKE
Sbjct: 540  TMHSEQKER------RSAEVAIRRTNIRLSRALEKKAEAEKLLAELEEET-PEQYEVDKE 592

Query: 710  AISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXX 531
             I+EEERYMLRKVGLRM AFLL+GRRGVFDGTVENMHLHWK+RELVKIISK   I+    
Sbjct: 593  GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652

Query: 530  XXXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRC 351
                   ESGGILVAVERV+KGYAII+YRGKNY RP  LRP TL  KR AMKRSLEAQR 
Sbjct: 653  EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712

Query: 350  ESLKLHVLKFSKKISQVK 297
            +SLKLHVL+ ++ I ++K
Sbjct: 713  QSLKLHVLELTRNIEKLK 730


>ref|XP_006482480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X5 [Citrus sinensis]
          Length = 1045

 Score =  692 bits (1785), Expect = 0.0
 Identities = 384/678 (56%), Positives = 463/678 (68%), Gaps = 19/678 (2%)
 Frame = -3

Query: 2273 SAIQRISEKLRSLGFLEQHPPSSADDR-----PTTGPGSAGEIFIPTPGEILTHRVGYTI 2109
            SAIQRI++KLRSLG +EQ   +S DD       T    +AGEIFIP P  I  +RVG+TI
Sbjct: 66   SAIQRIADKLRSLGIVEQ--TTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTI 123

Query: 2108 DSSWSTPEHPVPQPGSGVTINRFHHLWT---RDKVRKAEARARKDSEPPPTVAELTIPPE 1938
            D SWSTPE+P+P PG+G  I R++ L     R K     ++  +  +  PT+AEL +  +
Sbjct: 124  DDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183

Query: 1937 ELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1758
            EL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWR +E+VKI CEDLCR+NMKRTH+ L
Sbjct: 184  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243

Query: 1757 ERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDK-------DKIFNETSLSSGMHNEPTN 1599
            ERKTGGLVVWRSGS IILYRG DYKYP +  ++        D + N+     G+    T+
Sbjct: 244  ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTH 303

Query: 1598 SQEASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGP 1419
            S  A                     + I  VGS  K   ++ GE +L EEADRLLDGLGP
Sbjct: 304  SSGADSAK----PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGP 359

Query: 1418 RFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFA 1239
            RF+DWWG  P P+DADLL A VPG+R+PFRLLP+G++PKLT+ EMT L+RLGRPLPCHFA
Sbjct: 360  RFTDWWGYDPQPVDADLLSATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFA 419

Query: 1238 LGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFF 1059
            LGRN NLQGLA +++KLWEKCEIAKIA+KRG QNTNS MMA+ELK+LTGGTLLSRDREF 
Sbjct: 420  LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479

Query: 1058 VFYRGKDFLPLVVSSAIEERR----NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXEL 891
            VFYRGKDFLP   S AIEERR    +  N+  +     N  +                + 
Sbjct: 480  VFYRGKDFLPPAASCAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS 539

Query: 890  KKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKE 711
               SEQK++       S   A++    RLS+A+ K   + K LAELE    P++ E+DKE
Sbjct: 540  TMHSEQKER------RSAEVAIRRTNIRLSRALEKKAEAEKLLAELEEET-PEQYEVDKE 592

Query: 710  AISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXX 531
             I+EEERYMLRKVGLRM AFLL+GRRGVFDGTVENMHLHWK+RELVKIISK   I+    
Sbjct: 593  GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652

Query: 530  XXXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRC 351
                   ESGGILVAVERV+KGYAII+YRGKNY RP  LRP TL  KR AMKRSLEAQR 
Sbjct: 653  EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712

Query: 350  ESLKLHVLKFSKKISQVK 297
            +SLKLHVL+ ++ I ++K
Sbjct: 713  QSLKLHVLELTRNIEKLK 730


>ref|XP_006482479.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X4 [Citrus sinensis]
          Length = 1050

 Score =  692 bits (1785), Expect = 0.0
 Identities = 384/678 (56%), Positives = 463/678 (68%), Gaps = 19/678 (2%)
 Frame = -3

Query: 2273 SAIQRISEKLRSLGFLEQHPPSSADDR-----PTTGPGSAGEIFIPTPGEILTHRVGYTI 2109
            SAIQRI++KLRSLG +EQ   +S DD       T    +AGEIFIP P  I  +RVG+TI
Sbjct: 66   SAIQRIADKLRSLGIVEQ--TTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTI 123

Query: 2108 DSSWSTPEHPVPQPGSGVTINRFHHLWT---RDKVRKAEARARKDSEPPPTVAELTIPPE 1938
            D SWSTPE+P+P PG+G  I R++ L     R K     ++  +  +  PT+AEL +  +
Sbjct: 124  DDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183

Query: 1937 ELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1758
            EL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWR +E+VKI CEDLCR+NMKRTH+ L
Sbjct: 184  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243

Query: 1757 ERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDK-------DKIFNETSLSSGMHNEPTN 1599
            ERKTGGLVVWRSGS IILYRG DYKYP +  ++        D + N+     G+    T+
Sbjct: 244  ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTH 303

Query: 1598 SQEASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGP 1419
            S  A                     + I  VGS  K   ++ GE +L EEADRLLDGLGP
Sbjct: 304  SSGADSAK----PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGP 359

Query: 1418 RFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFA 1239
            RF+DWWG  P P+DADLL A VPG+R+PFRLLP+G++PKLT+ EMT L+RLGRPLPCHFA
Sbjct: 360  RFTDWWGYDPQPVDADLLSATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFA 419

Query: 1238 LGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFF 1059
            LGRN NLQGLA +++KLWEKCEIAKIA+KRG QNTNS MMA+ELK+LTGGTLLSRDREF 
Sbjct: 420  LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479

Query: 1058 VFYRGKDFLPLVVSSAIEERR----NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXEL 891
            VFYRGKDFLP   S AIEERR    +  N+  +     N  +                + 
Sbjct: 480  VFYRGKDFLPPAASCAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS 539

Query: 890  KKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKE 711
               SEQK++       S   A++    RLS+A+ K   + K LAELE    P++ E+DKE
Sbjct: 540  TMHSEQKER------RSAEVAIRRTNIRLSRALEKKAEAEKLLAELEEET-PEQYEVDKE 592

Query: 710  AISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXX 531
             I+EEERYMLRKVGLRM AFLL+GRRGVFDGTVENMHLHWK+RELVKIISK   I+    
Sbjct: 593  GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652

Query: 530  XXXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRC 351
                   ESGGILVAVERV+KGYAII+YRGKNY RP  LRP TL  KR AMKRSLEAQR 
Sbjct: 653  EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712

Query: 350  ESLKLHVLKFSKKISQVK 297
            +SLKLHVL+ ++ I ++K
Sbjct: 713  QSLKLHVLELTRNIEKLK 730


>ref|XP_006482478.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X3 [Citrus sinensis]
          Length = 1062

 Score =  692 bits (1785), Expect = 0.0
 Identities = 384/678 (56%), Positives = 463/678 (68%), Gaps = 19/678 (2%)
 Frame = -3

Query: 2273 SAIQRISEKLRSLGFLEQHPPSSADDR-----PTTGPGSAGEIFIPTPGEILTHRVGYTI 2109
            SAIQRI++KLRSLG +EQ   +S DD       T    +AGEIFIP P  I  +RVG+TI
Sbjct: 66   SAIQRIADKLRSLGIVEQ--TTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTI 123

Query: 2108 DSSWSTPEHPVPQPGSGVTINRFHHLWT---RDKVRKAEARARKDSEPPPTVAELTIPPE 1938
            D SWSTPE+P+P PG+G  I R++ L     R K     ++  +  +  PT+AEL +  +
Sbjct: 124  DDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183

Query: 1937 ELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1758
            EL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWR +E+VKI CEDLCR+NMKRTH+ L
Sbjct: 184  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243

Query: 1757 ERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDK-------DKIFNETSLSSGMHNEPTN 1599
            ERKTGGLVVWRSGS IILYRG DYKYP +  ++        D + N+     G+    T+
Sbjct: 244  ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTH 303

Query: 1598 SQEASLLPMLXXXXXXXXXXXXXXXSFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGP 1419
            S  A                     + I  VGS  K   ++ GE +L EEADRLLDGLGP
Sbjct: 304  SSGADSAK----PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGP 359

Query: 1418 RFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFA 1239
            RF+DWWG  P P+DADLL A VPG+R+PFRLLP+G++PKLT+ EMT L+RLGRPLPCHFA
Sbjct: 360  RFTDWWGYDPQPVDADLLSATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFA 419

Query: 1238 LGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFF 1059
            LGRN NLQGLA +++KLWEKCEIAKIA+KRG QNTNS MMA+ELK+LTGGTLLSRDREF 
Sbjct: 420  LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479

Query: 1058 VFYRGKDFLPLVVSSAIEERR----NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXEL 891
            VFYRGKDFLP   S AIEERR    +  N+  +     N  +                + 
Sbjct: 480  VFYRGKDFLPPAASCAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS 539

Query: 890  KKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKE 711
               SEQK++       S   A++    RLS+A+ K   + K LAELE    P++ E+DKE
Sbjct: 540  TMHSEQKER------RSAEVAIRRTNIRLSRALEKKAEAEKLLAELEEET-PEQYEVDKE 592

Query: 710  AISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXX 531
             I+EEERYMLRKVGLRM AFLL+GRRGVFDGTVENMHLHWK+RELVKIISK   I+    
Sbjct: 593  GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652

Query: 530  XXXXXXXESGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRC 351
                   ESGGILVAVERV+KGYAII+YRGKNY RP  LRP TL  KR AMKRSLEAQR 
Sbjct: 653  EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712

Query: 350  ESLKLHVLKFSKKISQVK 297
            +SLKLHVL+ ++ I ++K
Sbjct: 713  QSLKLHVLELTRNIEKLK 730