BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00016064
         (1649 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   310   1e-81
emb|CBI35920.3| unnamed protein product [Vitis vinifera]              299   3e-78
ref|XP_004979718.1| PREDICTED: DNA-directed RNA polymerase I sub...   280   1e-72
gb|AFW60354.1| A49-like RNA polymerase I associated factor famil...   277   1e-71
ref|NP_001150836.1| LOC100284469 [Zea mays] gi|195642286|gb|ACG4...   275   3e-71
ref|XP_006350715.1| PREDICTED: uncharacterized protein LOC102603...   273   1e-70
ref|XP_004240985.1| PREDICTED: uncharacterized protein LOC101267...   273   1e-70
ref|XP_003577359.1| PREDICTED: DNA-directed RNA polymerase I sub...   272   4e-70
gb|EMT03118.1| DNA-directed RNA polymerase I subunit rpa49 [Aegi...   270   2e-69
gb|EAY88445.1| hypothetical protein OsI_09911 [Oryza sativa Indi...   268   7e-69
dbj|BAJ90975.1| predicted protein [Hordeum vulgare subsp. vulgare]    267   1e-68
dbj|BAJ94402.1| predicted protein [Hordeum vulgare subsp. vulgar...   267   1e-68
gb|EXB29690.1| DNA-directed RNA polymerase I subunit rpa49 [Moru...   262   4e-67
ref|XP_006663046.1| PREDICTED: DNA-directed RNA polymerase I sub...   259   2e-66
ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...   258   4e-66
ref|XP_006465974.1| PREDICTED: uncharacterized protein LOC102616...   256   3e-65
ref|XP_006426597.1| hypothetical protein CICLE_v10025597mg [Citr...   256   3e-65
gb|EOY23991.1| DNA-directed RNA polymerase I subunit rpa49, puta...   254   8e-65
ref|XP_006850502.1| hypothetical protein AMTR_s00035p00224680 [A...   251   5e-64
ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221...   250   1e-63

>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
            vinifera]
          Length = 421

 Score =  310 bits (794), Expect = 1e-81
 Identities = 182/405 (44%), Positives = 245/405 (60%), Gaps = 7/405 (1%)
 Frame = +1

Query: 82   KKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPHG----HANGDPNIKVFRNKRRPNR 249
            K++K K VNV ME V E  + + P+VGYFPSGFDPH      ++  P +KVFRNK R NR
Sbjct: 20   KRKKKKHVNVKMEVVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANR 79

Query: 250  LELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRL 429
            L+L            G SY+GEAA  Q+C YA+GVLDKE+QTLKIVPIASNKI RLEPR+
Sbjct: 80   LQLVVSPNDSKVNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRV 139

Query: 430  KGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXXFFSQRNDASTD 609
             G+     E S  L  E     K  R +R+LT +YGT              +Q++D  + 
Sbjct: 140  GGSDASVDEPSSLLKGEQTAEEKAGR-MRDLTNLYGTKKSITQAKKLQA-LNQKDDPRSQ 197

Query: 610  EHINSINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDIL 789
            + ++    E     + LE       RNIPP+D +A TP +AY LD+II   E D L DIL
Sbjct: 198  KDLDRKLKEVVINKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDIL 257

Query: 790  EALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKHE--H 963
            + L++G ++ S +Y +FV NR  KL+E++D+ EK  LACI SYI+HL  + DR   +   
Sbjct: 258  DLLQAGVEVESSAYSSFVCNRIQKLKELEDEGEKTTLACIFSYINHLLKYKDRNSMDASS 317

Query: 964  FEHLKIPRASYQNFTRTF-LDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDL 1140
             +H KIP    Q F+  F LD +S +LT EKK+L+I Y+LVLTL+ D F+TDP+DIA+DL
Sbjct: 318  AKHHKIPGILNQKFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDPSDIARDL 377

Query: 1141 KMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAPLRLPEIIKPSRR 1275
            +M+ + L+ +F  LGCK     NK T+  L  PL  P + +  RR
Sbjct: 378  RMSAVKLRAHFEHLGCKLVSQ-NKVTMATLPVPLTFPRLRQKRRR 421


>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score =  299 bits (765), Expect = 3e-78
 Identities = 176/394 (44%), Positives = 237/394 (60%), Gaps = 7/394 (1%)
 Frame = +1

Query: 115  MEGVSETADHVAPIVGYFPSGFDPHG----HANGDPNIKVFRNKRRPNRLELXXXXXXXX 282
            ME V E  + + P+VGYFPSGFDPH      ++  P +KVFRNK R NRL+L        
Sbjct: 1    MEVVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPNDSK 60

Query: 283  XXXXGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVS 462
                G SY+GEAA  Q+C YA+GVLDKE+QTLKIVPIASNKI RLEPR+ G+     E S
Sbjct: 61   VNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDEPS 120

Query: 463  EGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXXFFSQRNDASTDEHINSINHETD 642
              L  E     K  R +R+LT +YGT              +Q++D  + + ++    E  
Sbjct: 121  SLLKGEQTAEEKAGR-MRDLTNLYGTKKSITQAKKLQA-LNQKDDPRSQKDLDRKLKEVV 178

Query: 643  EGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISS 822
               + LE       RNIPP+D +A TP +AY LD+II   E D L DIL+ L++G ++ S
Sbjct: 179  INKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVES 238

Query: 823  KSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKHE--HFEHLKIPRASY 996
             +Y +FV NR  KL+E++D+ EK  LACI SYI+HL  + DR   +    +H KIP    
Sbjct: 239  SAYSSFVCNRIQKLKELEDEGEKTTLACIFSYINHLLKYKDRNSMDASSAKHHKIPGILN 298

Query: 997  QNFTRTF-LDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYF 1173
            Q F+  F LD +S +LT EKK+L+I Y+LVLTL+ D F+TDP+DIA+DL+M+ + L+ +F
Sbjct: 299  QKFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDPSDIARDLRMSAVKLRAHF 358

Query: 1174 VQLGCKGKHVFNKPTIWNLTAPLRLPEIIKPSRR 1275
              LGCK     NK T+  L  PL  P + +  RR
Sbjct: 359  EHLGCKLVSQ-NKVTMATLPVPLTFPRLRQKRRR 391


>ref|XP_004979718.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Setaria
            italica]
          Length = 520

 Score =  280 bits (717), Expect = 1e-72
 Identities = 181/437 (41%), Positives = 241/437 (55%), Gaps = 26/437 (5%)
 Frame = +1

Query: 49   AGATSVAGSGSKKRKWKRVNVAMEGV---SETADHVAPIVGYFPSGFDPHGHA------- 198
            A   + A + +K      +NV ++       TA   AP V YFP+G+DP   A       
Sbjct: 93   ASTEAAADASTKAAVDASLNVTVDASLTGGRTAAAPAPAVAYFPTGYDPLAAAAVAAEED 152

Query: 199  NGDPNIKVFRNKRRPNRLELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGVLDKESQTL 378
               PN ++FR+++ P  ++L            GRSYAGEAA PQ+C YA+GVLDK S TL
Sbjct: 153  ESAPNARLFRHEKHPTWVDLVVGSSGGGPDFVGRSYAGEAATPQLCEYALGVLDKASGTL 212

Query: 379  KIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXX 558
            ++VPIA+NKILRLEP L+      ++ SE  +E        E KV++LT+MYGT      
Sbjct: 213  RVVPIAANKILRLEPHLEVQQPAHSQHSEVASEAGSVAGNDELKVQDLTMMYGTKTDRDK 272

Query: 559  XXXXXXFFSQRNDASTDEHIN--SINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKA 732
                     QRND S  E I+  + N  T++  + +      I RNIPP+D +ADT +KA
Sbjct: 273  DNKWRSLNEQRNDPSAYEDIDLGTSNVHTNDNQEPV------IVRNIPPYDPTADTSEKA 326

Query: 733  YHLDEIIPIIERDDLFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGELACIL 912
            Y LDEIIP   R  L +I++  ESG  ISSK Y +FV NR  KL+E++ Q +K  LA IL
Sbjct: 327  YLLDEIIPKNMRQHLLEIVDHFESG-QISSKGYSSFVSNRVQKLQELQGQ-DKERLAWIL 384

Query: 913  SYISHLCHFWDR----QKHEHFEHLK---------IPRASYQNFTRTFLDPNSIKLTAEK 1053
            SYI HL   ++R     KH H +H K          P A Y+N    F +P S  +++EK
Sbjct: 385  SYIQHLLSLYERNGCMSKH-HRKHRKENKANHGPGTPLAVYRNLLLIFTEPGSSSMSSEK 443

Query: 1054 KELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHV-FNKPTIWNL 1230
             EL+I YILVLTLF D F++DP DI  DLKMT   LKPY+ QLGCK       K T   L
Sbjct: 444  NELLINYILVLTLFADDFRSDPKDICADLKMTRQMLKPYYDQLGCKSVSAGAFKSTFMTL 503

Query: 1231 TAPLRLPEIIKPSRRNK 1281
             APL  P+ +   +R +
Sbjct: 504  PAPLNFPQDVTRRKRRR 520


>gb|AFW60354.1| A49-like RNA polymerase I associated factor family protein [Zea mays]
          Length = 458

 Score =  277 bits (708), Expect = 1e-71
 Identities = 180/441 (40%), Positives = 243/441 (55%), Gaps = 17/441 (3%)
 Frame = +1

Query: 10   KKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPH 189
            KK+  S++ + A    T+V    S           M G S  A   AP+VGYFPSG+DP 
Sbjct: 35   KKKKHSKKHKAASDAPTNVTVDAS----------LMGGSSYVA--AAPVVGYFPSGYDPL 82

Query: 190  GHANGD---PNIKVFRNKRRPNRLELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGVLD 360
              A G    P  ++FR+++ P  ++L            GRSYAGEAAVPQ+C+YA+GVLD
Sbjct: 83   TTAAGAESAPGTQLFRHEKHPTWVDLVVRSPGGGHDFVGRSYAGEAAVPQVCDYALGVLD 142

Query: 361  KESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGT 540
            K S TL+IVPIA  KILRLEP L+      ++ SE  +E +      E KV++LT+MYG 
Sbjct: 143  KASGTLRIVPIAGKKILRLEPHLEVQHPAHSQHSEVASEAASAAGNDELKVQDLTMMYGA 202

Query: 541  XXXXXXXXXXXXFFSQRNDASTDEHINSINHETDEGNDVLEDAVESIPRNIPPHDLSADT 720
                           QRND S  E I+    ET+   +  ++ V  + RNIPP+D +ADT
Sbjct: 203  KTDRDKDNKWRSLKEQRNDPSAYEDIDLGISETNVNANDRQEPV--LVRNIPPYDPTADT 260

Query: 721  PDKAYHLDEIIPIIERDDLFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGEL 900
             + AY LDEIIP   R+ L +I+   ESG +ISSK Y +FV  R HKL+E++ + +K   
Sbjct: 261  SENAYLLDEIIPKSMREHLLEIVRHFESG-EISSKGYGSFVSKRVHKLKELQGE-DKKRF 318

Query: 901  ACILSYISHLCHF-----------WDRQKHEHFEH-LKIPRASYQNFTRTFLDPNSIKLT 1044
            A ILSYI HL              W  +      H    P+A Y+     F +P S  + 
Sbjct: 319  AWILSYIQHLLSLLARNGSMSNRKWKGRNENQISHGPATPQAVYRRLLFMFTEPGSSVMP 378

Query: 1045 AEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKG--KHVFNKPT 1218
             EKKEL+  YILVLTLF D F+++P+DI +DLKMT  +LKPY+ QLGCK   +  F K T
Sbjct: 379  TEKKELLTNYILVLTLFADDFRSNPSDICEDLKMTRQNLKPYYDQLGCKSVTEGAF-KST 437

Query: 1219 IWNLTAPLRLPEIIKPSRRNK 1281
               L APL+ P+ +   RR +
Sbjct: 438  FMTLPAPLKFPKEVTRKRRRQ 458


>ref|NP_001150836.1| LOC100284469 [Zea mays] gi|195642286|gb|ACG40611.1| A49-like RNA
            polymerase I associated factor family protein [Zea mays]
          Length = 442

 Score =  275 bits (704), Expect = 3e-71
 Identities = 179/441 (40%), Positives = 242/441 (54%), Gaps = 17/441 (3%)
 Frame = +1

Query: 10   KKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPH 189
            KK+  S++ + A    T+V    S           M G S  A   AP+VGYFPSG+DP 
Sbjct: 19   KKKKHSKKHKAASDAPTNVTVDAS----------LMGGSSYVA--AAPVVGYFPSGYDPL 66

Query: 190  GHANGD---PNIKVFRNKRRPNRLELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGVLD 360
              A G    P  ++FR+++ P  ++L            GRSYAGEAAVPQ+C+YA+GVLD
Sbjct: 67   TTAAGAESAPGTQLFRHEKHPTWVDLVVRSPGGGHDFVGRSYAGEAAVPQVCDYALGVLD 126

Query: 361  KESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGT 540
            K S TL+IVPIA  KILRLEP L+      ++ SE  +E +      E KV++LT+MYG 
Sbjct: 127  KASGTLRIVPIAGKKILRLEPHLEVQHPAHSQHSEVASEAASAAGNDELKVQDLTMMYGA 186

Query: 541  XXXXXXXXXXXXFFSQRNDASTDEHINSINHETDEGNDVLEDAVESIPRNIPPHDLSADT 720
                           QRND S  E I+    ET+   +  ++ V  + RNIPP+D +ADT
Sbjct: 187  KTDRDKDNKWRSLKEQRNDPSAYEDIDLGISETNVNANDRQEPV--LVRNIPPYDPTADT 244

Query: 721  PDKAYHLDEIIPIIERDDLFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGEL 900
             + AY LDEIIP   R+   +I+   ESG +ISSK Y +FV  R HKL+E++ + +K   
Sbjct: 245  SENAYLLDEIIPKSMREHFLEIVRHFESG-EISSKGYGSFVSKRVHKLKELQGE-DKKRF 302

Query: 901  ACILSYISHLCHF-----------WDRQKHEHFEH-LKIPRASYQNFTRTFLDPNSIKLT 1044
            A ILSYI HL              W  +      H    P+A Y+     F +P S  + 
Sbjct: 303  AWILSYIQHLLSLLARNGSMSNRKWKGRNENQISHGPATPQAVYRRLLFMFTEPGSSVMP 362

Query: 1045 AEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKG--KHVFNKPT 1218
             EKKEL+  YILVLTLF D F+++P+DI +DLKMT  +LKPY+ QLGCK   +  F K T
Sbjct: 363  TEKKELLTNYILVLTLFADDFRSNPSDICEDLKMTRQNLKPYYDQLGCKSVTEGAF-KST 421

Query: 1219 IWNLTAPLRLPEIIKPSRRNK 1281
               L APL+ P+ +   RR +
Sbjct: 422  FMTLPAPLKFPKEVTRKRRRQ 442


>ref|XP_006350715.1| PREDICTED: uncharacterized protein LOC102603859 [Solanum tuberosum]
          Length = 431

 Score =  273 bits (699), Expect = 1e-70
 Identities = 169/431 (39%), Positives = 242/431 (56%), Gaps = 10/431 (2%)
 Frame = +1

Query: 13   KETKSRRDRQAMAGATSVAGSGSKKRKWKRVN---VAMEGVSETADHVAPIVGYFPSGFD 183
            KE K+  D+        +  S  KK K K+     V ME ++E  ++++PIVGYFPSG+D
Sbjct: 5    KEKKNLEDQNPSEVEGKMGESTKKKTKKKKKETHTVTMETIAENPNNISPIVGYFPSGYD 64

Query: 184  PHGHANG---DPNIKVFRNKRRPNRLELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGV 354
            P  + N    + + K++RN +R NRL+L            G +Y+GEA   Q+C Y++G+
Sbjct: 65   PLTNNNDGVEELSTKLYRNAKRNNRLQLVVSPNGSQVDFVGTNYSGEATSAQLCTYSLGI 124

Query: 355  LDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMY 534
            LDKE+QTLKIVPIA+NKI+RLEPR++G    ETE     A++ +   +   K+RELT  Y
Sbjct: 125  LDKETQTLKIVPIAANKIIRLEPRVRGLEAQETE-DPDTAKQELTAEERNDKMRELTQKY 183

Query: 535  GTXXXXXXXXXXXXFFSQRNDASTDEHINSINHETDEGNDVLEDAVES-IPRNIPPHDLS 711
             +               Q +  + +E   +I    ++  + LE AV +   RNIPPHDL 
Sbjct: 184  SSKKTIRQARKLDSLRQQEDTGNQEEFDRNIAGAINK--EALEVAVATDSARNIPPHDLD 241

Query: 712  ADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEK 891
            A  P  AY LD II   E D L DI E  E+G +++   YP+FV NR +KL  I+D+ EK
Sbjct: 242  ATIPQLAYPLDRIISKGEWDFLLDIFELTEAGAEMTPDLYPSFVCNRSYKLEHIQDEDEK 301

Query: 892  GELACILSYISHLCHFWDRQKHE---HFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKEL 1062
              LA I S+I+HL  F D+   +     +H K P    Q FT  F   +S +L  EK  L
Sbjct: 302  KRLAGIFSFITHLVKFKDKHSMDGVSSAKHHKFPGILSQKFTSMFSISDSKRLPEEKVTL 361

Query: 1063 MIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAPL 1242
            +I Y+LVLTLF D F++DP+DIAKDL++  ++L+P++  LGCK     N   +  L  PL
Sbjct: 362  LINYVLVLTLFADDFRSDPSDIAKDLRINAVALRPFYEYLGCKLVREKN-VVLATLPVPL 420

Query: 1243 RLPEIIKPSRR 1275
              P + +  RR
Sbjct: 421  VFPSVRRKRRR 431


>ref|XP_004240985.1| PREDICTED: uncharacterized protein LOC101267531 [Solanum
            lycopersicum]
          Length = 410

 Score =  273 bits (699), Expect = 1e-70
 Identities = 163/409 (39%), Positives = 235/409 (57%), Gaps = 10/409 (2%)
 Frame = +1

Query: 79   SKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPHGHANG---DPNIKVFRNKRRPNR 249
            SKK+K +   V ME ++E  ++++P+VGYFPSG+DP  + N    + + K++RN RR NR
Sbjct: 9    SKKKKKETHTVTMETIAENPNNISPMVGYFPSGYDPLRNTNDGVEELSTKLYRNVRRNNR 68

Query: 250  LELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRL 429
            L++            G +Y+GEA   Q+C Y++G+LDKE+QTLKIVPIA+NKI+RLEPR+
Sbjct: 69   LQVVVSPYGSQVDFVGTNYSGEATSAQLCTYSLGILDKETQTLKIVPIAANKIIRLEPRV 128

Query: 430  KGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXXFFSQRNDASTD 609
            +G+ + + E  +   +E     + + K+RELT MY +               Q +  + +
Sbjct: 129  RGSEVPDAEDPDTAKQELTAEERND-KMRELTQMYSSKKSIRQARKLDSLRQQEDTGNQE 187

Query: 610  EH----INSINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDL 777
            E       +IN E  E     + A     RNIPPHDL A  P  AY LD II   E D L
Sbjct: 188  EFDRNIAGAINKEALEVTVATDSA-----RNIPPHDLDATIPQLAYPLDRIISKGEWDFL 242

Query: 778  FDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKH 957
             DI E  E+G +++   YP+FV NR +KL  I+D+ EK  LA ILS+I+HL  F D+   
Sbjct: 243  LDIFELTEAGAEMTPDLYPSFVRNRSYKLEHIQDEDEKKRLAGILSFITHLVKFKDKHSM 302

Query: 958  E---HFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDI 1128
            +     +H K P    Q FT  F   +S +L  EK  L+I Y+LVLTLF D F++DP+DI
Sbjct: 303  DGVSSAKHHKFPGILSQKFTSMFSISDSKRLPEEKVTLLINYVLVLTLFADDFRSDPSDI 362

Query: 1129 AKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAPLRLPEIIKPSRR 1275
            AKDL++  ++L+P++  LGCK     N   +  L  PL  P + +  RR
Sbjct: 363  AKDLRINAVALRPFYEYLGCKLVREKN-IVLATLPVPLVFPGVRRKRRR 410


>ref|XP_003577359.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
            [Brachypodium distachyon]
          Length = 472

 Score =  272 bits (695), Expect = 4e-70
 Identities = 175/431 (40%), Positives = 243/431 (56%), Gaps = 9/431 (2%)
 Frame = +1

Query: 10   KKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPH 189
            KK+ +   D    A ++  A S  KK+K K ++V ++  S  A   AP+VGYFP+G+DP 
Sbjct: 45   KKKHRKATDVTVDAPSSPTAASSKKKKKRKAIDVTVDA-SFAAAAAAPVVGYFPTGYDPL 103

Query: 190  GHANGDPNIKVFRNKRRPNRLELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGVLDKES 369
              A   P  ++FR+++  NR++L            GRSYAGE A P +C YA+GVLDK S
Sbjct: 104  AAAE-PPRARLFRHEKHSNRVDLVVSAPGGGLDFVGRSYAGETAAPHLCGYALGVLDKAS 162

Query: 370  QTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXX 549
             TLK+VPIA+NKILRLEP  +      +E S   A  SV   +V+R  ++LT  YGT   
Sbjct: 163  GTLKVVPIAANKILRLEPHFEEQKPAHSEQSAAEAGSSVANTEVKR--QQLTEAYGTQKD 220

Query: 550  XXXXXXXXXFFSQRNDASTDEHINSINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDK 729
                        + ND   D ++     ++    D  +       RNIPP+D +ADT +K
Sbjct: 221  KVKDNKWKSLKEETND--PDAYLGLELGDSKTTADATDSQASVTVRNIPPYDPAADTSEK 278

Query: 730  AYHLDEIIPIIERDDLFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGELACI 909
            AY  DEIIP   R  L +I+   ESG +ISSK Y +FV NR +KL+ +K +  K  LA I
Sbjct: 279  AYLFDEIIPKNIRPHLLEIVGHFESG-EISSKGYGSFVSNRVNKLQHLKGE-GKERLAWI 336

Query: 910  LSYISHLCHFWDR----QKHEHFEHLK----IPRASYQNFTRTFLDPNSIKLTAEKKELM 1065
            LSYI++L     R     K +  E+L     IP   ++N    F +P S  L+ EK EL+
Sbjct: 337  LSYITYLLSLLARNSAMSKRDRKENLSHGPTIPPNVHRNLLLMFTEPGSSALSTEKHELL 396

Query: 1066 IGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCK-GKHVFNKPTIWNLTAPL 1242
            I YILVLTL+ D+F + P DI +DLKMT   LKPY++QLGCK G     KP++  L APL
Sbjct: 397  INYILVLTLYADNFTSSPADICEDLKMTREMLKPYYLQLGCKYGSAGAFKPSVITLPAPL 456

Query: 1243 RLPEIIKPSRR 1275
            + P+  +P+R+
Sbjct: 457  KFPQ--EPTRK 465


>gb|EMT03118.1| DNA-directed RNA polymerase I subunit rpa49 [Aegilops tauschii]
          Length = 421

 Score =  270 bits (689), Expect = 2e-69
 Identities = 172/420 (40%), Positives = 232/420 (55%), Gaps = 13/420 (3%)
 Frame = +1

Query: 61   SVAGSGSKKRKWKRVNVAMEGVSETA--DHVAPIVGYFPSGFDPHGHANGDPNIKVFRNK 234
            S A S  KK++  +   A+E   + +     AP+VGYFP+G+DP   A   P +++FR++
Sbjct: 9    SPAASSKKKKRHSKKRKAIEVTVDASFPGAAAPVVGYFPTGYDPLAAAE-PPRVRLFRHE 67

Query: 235  RRPNRLELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILR 414
            +  NR+EL            GRSYAGEAA PQ+C YA+GVLDK + TLKIVPIASNKILR
Sbjct: 68   KHHNRVELVVGAPGGGPDFVGRSYAGEAAAPQLCGYALGVLDKATGTLKIVPIASNKILR 127

Query: 415  LEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXXFFSQRN 594
            LEP  +      ++ S   A  SV   ++ R  ++LT  YGT               QRN
Sbjct: 128  LEPHFEAQQPAHSQQSAAEAGSSVADTELNR--QDLTQAYGTKKDKDKDNKWKSLKEQRN 185

Query: 595  DASTDEHINSINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDD 774
            D S    ++    +T       E +VE   RNIPP+D +ADT +KAY  DEIIP   R  
Sbjct: 186  DPSAYLDLDLGESKTTADATDSEASVE--VRNIPPYDPAADTSEKAYLFDEIIPKNIRPH 243

Query: 775  LFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDR-- 948
            L DI+   ESG +   K Y +FV NR +KL+E++ + ++  LA ILSYI+HL     R  
Sbjct: 244  LLDIVGHFESG-EFGLKGYGSFVSNRVNKLQELQGEDQE-RLAWILSYITHLLSLLARNS 301

Query: 949  --------QKHEHFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDS 1104
                    +K +      IP+A ++     F +P S  L+ EK EL++ YILVLTLF D 
Sbjct: 302  SMSKQKRKEKDQTIRGPMIPQAVHRKLLLMFTEPGSSSLSTEKHELLVNYILVLTLFADD 361

Query: 1105 FQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHV-FNKPTIWNLTAPLRLPEIIKPSRRNK 1281
            F+++PTDI  DLKM    LKPY+ QLGCK       KP    L APL+ P+ +   RR K
Sbjct: 362  FRSEPTDICVDLKMNRQMLKPYYDQLGCKSVSTGAFKPFFMTLPAPLKFPQQVTRRRRRK 421


>gb|EAY88445.1| hypothetical protein OsI_09911 [Oryza sativa Indica Group]
          Length = 438

 Score =  268 bits (684), Expect = 7e-69
 Identities = 174/445 (39%), Positives = 238/445 (53%), Gaps = 18/445 (4%)
 Frame = +1

Query: 1    KRWKKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGF 180
            K+ KK +K + D       T+V     KKR+   V V        A   AP+V YFP+G+
Sbjct: 8    KKEKKHSKKQED-------TNVP---EKKREVVHVTVDASLTGAAAAGAAPVVAYFPTGY 57

Query: 181  DPHGHANGD-----PNIKVFRNKRRPNRLELXXXXXXXXXXXX---GRSYAGEAAVPQIC 336
            DP     G      P  ++FR+ + P+R+EL               GRSYAGEA +PQ+ 
Sbjct: 58   DPLAAGGGRKGREAPRTRLFRHTKHPSRIELVVGAATGGGGGPDFVGRSYAGEAVLPQLT 117

Query: 337  NYAVGVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVR 516
             YA+GVLDK S TLK+VPIA+NKILRLEP L+   L  ++ S  + E        + KV+
Sbjct: 118  GYALGVLDKASGTLKVVPIAANKILRLEPHLEVQKLAHSQHSGAVGEAVSSAGDADLKVQ 177

Query: 517  ELTLMYGTXXXXXXXXXXXXFFSQRNDASTDEHINSINHETDEGNDVLEDAVESIPRNIP 696
            ++T  +GT               QRND S    ++  N +T  G     ++ E   RNIP
Sbjct: 178  DITKAFGTQKDKAKDIKWQSLNEQRNDPSAFMDLDLGNADTSVG---ANESQEPTVRNIP 234

Query: 697  PHDLSADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISSKSYPTFVYNRRHKLREIK 876
            P+D +ADT ++AY  DEIIP   R  L DI+   ESG +ISSK Y +FV NR +KL+E++
Sbjct: 235  PYDPAADTSERAYLFDEIIPKSIRPHLVDIIGHFESG-EISSKGYGSFVSNRVNKLQELQ 293

Query: 877  DQKEKGELACILSYISHLCHFWDRQKHEHFEHLK---------IPRASYQNFTRTFLDPN 1029
             + +K  LA ILSYI+HL     R       H K         IP+  Y+     F +P 
Sbjct: 294  GE-DKERLAWILSYITHLLSLLARNSSMSKRHRKENQATSGPVIPQYVYRKMVLMFTEPG 352

Query: 1030 SIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHV-F 1206
            S  L+ EK EL+I YILVLTL+ D F++DP DI +DLKMT   +KPY+ QLGCK      
Sbjct: 353  SSALSTEKHELLINYILVLTLYADDFRSDPKDICEDLKMTRQMIKPYYDQLGCKSSSAGA 412

Query: 1207 NKPTIWNLTAPLRLPEIIKPSRRNK 1281
             K ++  L APL+ P+     +R +
Sbjct: 413  FKSSVMTLPAPLKFPKEATRRKRRR 437


>dbj|BAJ90975.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 431

 Score =  267 bits (682), Expect = 1e-68
 Identities = 172/420 (40%), Positives = 229/420 (54%), Gaps = 13/420 (3%)
 Frame = +1

Query: 61   SVAGSGSKKRKWKRVNVAMEGVSETA--DHVAPIVGYFPSGFDPHGHANGDPNIKVFRNK 234
            S A S  KK+K  +   A+E   + +     AP+VGYFP+G+DP   A+  P  ++FR++
Sbjct: 20   SPAASSKKKKKHSKKRKAIEVTVDASFPGAAAPVVGYFPTGYDPLAAAD-PPRARLFRHE 78

Query: 235  RRPNRLELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILR 414
            +  NR+EL            GRSYAGEAA PQ+C YA+GVLDK + TLKIVPIASNKILR
Sbjct: 79   KHHNRVELVVDAPGGGPDFVGRSYAGEAAAPQLCGYALGVLDKATGTLKIVPIASNKILR 138

Query: 415  LEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXXFFSQRN 594
            LEP  +      ++ S   A  SV   ++ R  ++LT  YGT               QRN
Sbjct: 139  LEPHFEVQQPAHSQQSAAEACSSVADTELNR--QDLTQAYGTKKDKDKDNKWKSLKEQRN 196

Query: 595  DASTDEHINSINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDD 774
            D S    ++    +T +  D          RNIPP+D +ADT +KAY  DEIIP   R  
Sbjct: 197  DPSAYLDLDLGESKTADATD---SQASMEVRNIPPYDPAADTSEKAYLFDEIIPKNIRPH 253

Query: 775  LFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDR-- 948
            L DI+   ESG +   K Y +FV NR +KL E++ + ++  LA ILSYI+HL     R  
Sbjct: 254  LLDIVGHFESG-EFGLKGYGSFVSNRVNKLHELQGEDQE-RLAWILSYITHLLSLLARNS 311

Query: 949  --------QKHEHFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDS 1104
                    +K +      IP+A ++     F +P S  L+ EK EL+I YILVLTLF D 
Sbjct: 312  SMSKQKRKEKDQTIRGPMIPQAVHRKLLLMFTEPGSSSLSTEKYELLINYILVLTLFADD 371

Query: 1105 FQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHV-FNKPTIWNLTAPLRLPEIIKPSRRNK 1281
            F+++PTDI  DLKM    LKPY+ QLGCK       KP    L APL+ P+ +   RR K
Sbjct: 372  FRSEPTDICADLKMNRQMLKPYYDQLGCKSVSTGAFKPFFMTLPAPLKFPQQVTRRRRRK 431


>dbj|BAJ94402.1| predicted protein [Hordeum vulgare subsp. vulgare]
            gi|326529171|dbj|BAK00979.1| predicted protein [Hordeum
            vulgare subsp. vulgare]
          Length = 433

 Score =  267 bits (682), Expect = 1e-68
 Identities = 172/420 (40%), Positives = 229/420 (54%), Gaps = 13/420 (3%)
 Frame = +1

Query: 61   SVAGSGSKKRKWKRVNVAMEGVSETA--DHVAPIVGYFPSGFDPHGHANGDPNIKVFRNK 234
            S A S  KK+K  +   A+E   + +     AP+VGYFP+G+DP   A+  P  ++FR++
Sbjct: 22   SPAASSKKKKKHSKKRKAIEVTVDASFPGAAAPVVGYFPTGYDPLAAAD-PPRARLFRHE 80

Query: 235  RRPNRLELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILR 414
            +  NR+EL            GRSYAGEAA PQ+C YA+GVLDK + TLKIVPIASNKILR
Sbjct: 81   KHHNRVELVVDAPGGGPDFVGRSYAGEAAAPQLCGYALGVLDKATGTLKIVPIASNKILR 140

Query: 415  LEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXXFFSQRN 594
            LEP  +      ++ S   A  SV   ++ R  ++LT  YGT               QRN
Sbjct: 141  LEPHFEVQQPAHSQQSAAEACSSVADTELNR--QDLTQAYGTKKDKDKDNKWKSLKEQRN 198

Query: 595  DASTDEHINSINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDD 774
            D S    ++    +T +  D          RNIPP+D +ADT +KAY  DEIIP   R  
Sbjct: 199  DPSAYLDLDLGESKTADATD---SQASMEVRNIPPYDPAADTSEKAYLFDEIIPKNIRPH 255

Query: 775  LFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDR-- 948
            L DI+   ESG +   K Y +FV NR +KL E++ + ++  LA ILSYI+HL     R  
Sbjct: 256  LLDIVGHFESG-EFGLKGYGSFVSNRVNKLHELQGEDQE-RLAWILSYITHLLSLLARNS 313

Query: 949  --------QKHEHFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDS 1104
                    +K +      IP+A ++     F +P S  L+ EK EL+I YILVLTLF D 
Sbjct: 314  SMSKQKRKEKDQTIRGPMIPQAVHRKLLLMFTEPGSSSLSTEKYELLINYILVLTLFADD 373

Query: 1105 FQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHV-FNKPTIWNLTAPLRLPEIIKPSRRNK 1281
            F+++PTDI  DLKM    LKPY+ QLGCK       KP    L APL+ P+ +   RR K
Sbjct: 374  FRSEPTDICADLKMNRQMLKPYYDQLGCKSVSTGAFKPFFMTLPAPLKFPQQVTRRRRRK 433


>gb|EXB29690.1| DNA-directed RNA polymerase I subunit rpa49 [Morus notabilis]
          Length = 438

 Score =  262 bits (669), Expect = 4e-67
 Identities = 163/433 (37%), Positives = 240/433 (55%), Gaps = 9/433 (2%)
 Frame = +1

Query: 4    RWKKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFD 183
            R   ET++ R R   + +TS+A   SKK++  +V   ++ V    +   P+VGYFPSGFD
Sbjct: 11   RQNLETETPRKRSEPS-STSIAEKKSKKKRKNKVEATIQVVQNQPERAPPLVGYFPSGFD 69

Query: 184  PHG---HANGDPNIKVFRNKRRPNRLELXXXXXXXXXXXXGRSYAGEA-AVPQICNYAVG 351
            P      ++     +VFRN+ +P RL+L            G +Y+GEA A  Q CNYA+G
Sbjct: 70   PKDGDDESSATAMARVFRNRNKPKRLQLVVSPNGANVDFVGTNYSGEAEAGQQHCNYALG 129

Query: 352  VLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLM 531
            VLDKE+QTLKIVPIASNKI RLEP+++G  L   + S  LAE          K++ LT  
Sbjct: 130  VLDKETQTLKIVPIASNKIFRLEPKVRGLRLPNKD-SGSLAEGERSALSKSEKIKGLTDR 188

Query: 532  YGTXXXXXXXXXXXXFFSQRNDASTDEHINSINHETDEGNDVLEDAVESIPRNIPPHDLS 711
            YGT             + Q +D  T + ++    +     D LE       RNIPP++ +
Sbjct: 189  YGTNKSIREAKKRDALY-QNDDPETQKDMDEKIKQIVIKKDALESTQVHTDRNIPPYNAA 247

Query: 712  ADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEK 891
            A +  +AY +++II   E D L DI   L+   ++ S  YP+F+ NR   LRE +D++EK
Sbjct: 248  ATSSQEAYPIEKIILKGEWDFLEDIYRLLQEEAELKSDDYPSFISNRIQNLRETEDEEEK 307

Query: 892  GELACILSYISHLCHFWDRQKHE---HFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKEL 1062
               ACI SYI+HL  F D    +     +  K P    Q F+  FL     KL +++ +L
Sbjct: 308  KRRACIFSYITHLIKFKDLHSMDGVSSAKRHKFPSILRQKFSAMFLSSEVKKLASKENDL 367

Query: 1063 MIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIW--NLTA 1236
            +I Y+LVLTL+ D FQT+ TDIAKDL+MT+++L+ ++ QLGCK   +  +  +W   L  
Sbjct: 368  LISYVLVLTLYADRFQTNLTDIAKDLRMTSVTLRVHYEQLGCK---LVRQNNLWFATLPV 424

Query: 1237 PLRLPEIIKPSRR 1275
            PL+ P++ +  R+
Sbjct: 425  PLQFPDLRQRRRK 437


>ref|XP_006663046.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Oryza
            brachyantha]
          Length = 470

 Score =  259 bits (663), Expect = 2e-66
 Identities = 166/451 (36%), Positives = 241/451 (53%), Gaps = 24/451 (5%)
 Frame = +1

Query: 1    KRWKKETKSRRDRQAMAGATSVAGSGSKKRKWKR----------VNVAMEGVSETADHVA 150
            K+ KK +K R        A+  A +  +K+K K           V+ ++ G    +   A
Sbjct: 41   KKEKKRSKKRESIDVTEDASLAAAAAPEKKKKKHSKKREVINVTVDASLTGGGAASSGAA 100

Query: 151  PIVGYFPSGFDPHGHA---NGDPN-IKVFRNKRRPNRLELXXXXXXXXXXXXGRSYAGEA 318
            PIV YFP+G+DP   A     +P+  ++FR  + P R+EL            GRS+AGEA
Sbjct: 101  PIVAYFPTGYDPLAAAARKGKEPSRTRLFRQTKHPTRIELVVGAPGGGPDFVGRSFAGEA 160

Query: 319  AVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNK 498
             +PQ   YA+GVLDK S TLK+VPIASNK                + ++    E+     
Sbjct: 161  VLPQHTGYALGVLDKASGTLKVVPIASNK----------------KPAQSQHSEAGSAEN 204

Query: 499  VERKVRELTLMYGTXXXXXXXXXXXXFFSQRNDASTDEHINSINHETDEGNDVLEDAVES 678
             E KV+++TLM+G+               QRND S    ++  N +T+ G     ++ E 
Sbjct: 205  AELKVQDVTLMFGSQADKNKDIKWKSLNEQRNDPSAFLDLDLGNSDTNVG---ASESQEQ 261

Query: 679  IPRNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISSKSYPTFVYNRRH 858
              RNIPP+D +A+T ++AY  DEIIP   R  L DI+E  ESG + SSK Y +FV NR +
Sbjct: 262  TVRNIPPYDPAANTSERAYLFDEIIPSSIRPHLMDIVEHFESG-EFSSKGYESFVSNRVN 320

Query: 859  KLREIKDQKEKGELACILSYISHLCHF---------WDRQKHEHFEHLKIPRASYQNFTR 1011
            KL+E++ + +K  LA ILSYI+HL  F         W R+++     L IP A Y+    
Sbjct: 321  KLQELQGE-DKERLAWILSYITHLLTFLERNNSMSKWRRKENRATNRLMIPHAVYRKLLL 379

Query: 1012 TFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCK 1191
             F++P S  ++ EK EL+I YILVLTL+ D+F++DP DI +DLKMT+  ++PY+ QLGCK
Sbjct: 380  MFVEPGSGAVSTEKHELLINYILVLTLYADNFRSDPKDICEDLKMTSQMIRPYYAQLGCK 439

Query: 1192 GKHV-FNKPTIWNLTAPLRLPEIIKPSRRNK 1281
                     T+  L APL+ P+     +R +
Sbjct: 440  SVSAGALNSTVMTLPAPLKFPKEFARRKRRR 470


>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Glycine
            max]
          Length = 424

 Score =  258 bits (660), Expect = 4e-66
 Identities = 159/399 (39%), Positives = 214/399 (53%), Gaps = 6/399 (1%)
 Frame = +1

Query: 97   KRVNVAMEGVSETADHVAPIVGYFPSGFDP-HGHANGDPNIKVFRNKRRPNRLELXXXXX 273
            +++ V +E V E  +   P+VGYFPSGFDP   H  G  N +V+R++  P RLEL     
Sbjct: 34   EQIEVEVEVVREHPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVVRPP 93

Query: 274  XXXXXXXGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRLKGNSLLET 453
                   G SYAGEAA      YA+GVLDKE+ TLK+VPIA NKI RLEP++KG    E 
Sbjct: 94   RSSVEFVGTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFEN 153

Query: 454  EVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXXFFSQRNDASTDEHINSINH 633
            E +    EE       ++K  E T ++GT               Q  D  +  +++    
Sbjct: 154  EPANSTLEEMTQ----QQKFAETTSIWGTKKDIEKAKKKLAL-RQDEDPDSQRNLDVKMK 208

Query: 634  ETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDILEALESGTD 813
                    LE     + RNIPP+D SA TP +AY LD+II   E D L DI   L+ G +
Sbjct: 209  SVTVNKKALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEE 268

Query: 814  ISSKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKHE--HFEHLKIPR 987
                +YPTFV NR  +LR+IKD+ EK +L+CI SYI+HL  F D+   +    +  KIP 
Sbjct: 269  ADFSAYPTFVRNRIERLRKIKDESEKKQLSCIFSYINHLIKFKDQHSFDVLSAKGHKIPN 328

Query: 988  ASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKP 1167
                 F+  F    S +L  EK  L+I Y+LVLTLF D F+TD TDIAKDL M  + ++ 
Sbjct: 329  ILRHKFSNMFAVSESKRLPPEKISLLICYVLVLTLFSDEFRTDYTDIAKDLSMNILPVRQ 388

Query: 1168 YFVQLGCK---GKHVFNKPTIWNLTAPLRLPEIIKPSRR 1275
             +  LGCK    K++F       L  PL+ PE+ +  R+
Sbjct: 389  LYEHLGCKISRQKNIFYA----TLPVPLKFPELRQRKRK 423


>ref|XP_006465974.1| PREDICTED: uncharacterized protein LOC102616137 [Citrus sinensis]
          Length = 447

 Score =  256 bits (653), Expect = 3e-65
 Identities = 159/432 (36%), Positives = 232/432 (53%), Gaps = 10/432 (2%)
 Frame = +1

Query: 10   KKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDP- 186
            KK+ K R+  +A    T++      + + +RV   ++ + E  +   P+VGYFPS + P 
Sbjct: 25   KKKNKKRKKDKAN---TTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPD 81

Query: 187  --HGHANGDPNIKVFRN----KRRPNRLELXXXXXXXXXXXXGRSYAGEAAVPQICNYAV 348
              H      P ++V+RN    K R  R+EL            G SY+GEA  PQ C+YAV
Sbjct: 82   VDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAV 141

Query: 349  GVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTL 528
            GVLD+ +QTLKIVPIA+NKI RLEPR++G+ + + +  +G     V  N        L  
Sbjct: 142  GVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAM----LDT 197

Query: 529  MYGTXXXXXXXXXXXXFFSQRNDASTDEHINSINHETDEGNDVLEDAVESIPRNIPPHDL 708
             YGT              ++ ND  + + +           + LE        N+PP+D 
Sbjct: 198  RYGTKKSLRQSKKMHAL-NKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDA 256

Query: 709  SADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKE 888
            +A TP +AY LD+II   E D + DI   + +G+++ S +YP+FV NR HKLREI+D  E
Sbjct: 257  NATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVE 316

Query: 889  KGELACILSYISHLCHFWDRQKHE---HFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKE 1059
            K  LA I SYI+HL  F D+   +     +  +IP+  +Q F  +F D  S +L+ +K  
Sbjct: 317  KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIH 376

Query: 1060 LMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAP 1239
            L+I Y+LVLTL  D F+T+PTDIAKDL+M+   L+ +F +LGCK     N      L  P
Sbjct: 377  LLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNM-LYATLPVP 435

Query: 1240 LRLPEIIKPSRR 1275
            L+ P+ I+  RR
Sbjct: 436  LQFPKAIQRRRR 447


>ref|XP_006426597.1| hypothetical protein CICLE_v10025597mg [Citrus clementina]
            gi|557528587|gb|ESR39837.1| hypothetical protein
            CICLE_v10025597mg [Citrus clementina]
          Length = 447

 Score =  256 bits (653), Expect = 3e-65
 Identities = 159/432 (36%), Positives = 232/432 (53%), Gaps = 10/432 (2%)
 Frame = +1

Query: 10   KKETKSRRDRQAMAGATSVAGSGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDP- 186
            KK+ K R+  +A    T++      + + +RV   ++ + E  +   P+VGYFPS + P 
Sbjct: 25   KKKNKKRKKDKAN---TTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPD 81

Query: 187  --HGHANGDPNIKVFRN----KRRPNRLELXXXXXXXXXXXXGRSYAGEAAVPQICNYAV 348
              H      P ++V+RN    K R  R+EL            G SY+GEA  PQ C+YAV
Sbjct: 82   VDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAV 141

Query: 349  GVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTL 528
            GVLD+ +QTLKIVPIA+NKI RLEPR++G+ + + +  +G     V  N        L  
Sbjct: 142  GVLDRNTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAM----LDT 197

Query: 529  MYGTXXXXXXXXXXXXFFSQRNDASTDEHINSINHETDEGNDVLEDAVESIPRNIPPHDL 708
             YGT              ++ ND  + + +           + LE        N+PP+D 
Sbjct: 198  RYGTKKSLRQSKKMHAL-NKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDA 256

Query: 709  SADTPDKAYHLDEIIPIIERDDLFDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKE 888
            +A TP +AY LD+II   E D + DI   + +G+++ S +YP+FV NR HKLREI+D  E
Sbjct: 257  NATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVE 316

Query: 889  KGELACILSYISHLCHFWDRQKHE---HFEHLKIPRASYQNFTRTFLDPNSIKLTAEKKE 1059
            K  LA I SYI+HL  F D+   +     +  +IP+  +Q F  +F D  S +L+ +K  
Sbjct: 317  KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIH 376

Query: 1060 LMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAP 1239
            L+I Y+LVLTL  D F+T+PTDIAKDL+M+   L+ +F +LGCK     N      L  P
Sbjct: 377  LLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNM-LYATLPVP 435

Query: 1240 LRLPEIIKPSRR 1275
            L+ P+ I+  RR
Sbjct: 436  LQFPKAIQRRRR 447


>gb|EOY23991.1| DNA-directed RNA polymerase I subunit rpa49, putative [Theobroma
            cacao]
          Length = 457

 Score =  254 bits (649), Expect = 8e-65
 Identities = 164/466 (35%), Positives = 248/466 (53%), Gaps = 42/466 (9%)
 Frame = +1

Query: 4    RWKKETKSRRDRQAMAGATSVAGS-GSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGF 180
            R KK  K  R+ +       ++ + G+KK  ++   V ++   +  + + P+V YFPSG+
Sbjct: 12   RSKKSKKRNREGKLQQPIEPMSQNLGAKKENFQ---VKIQLFQDQPNKIPPLVAYFPSGY 68

Query: 181  DP--------------------HGHANGDPNIKVFRN--KRRPNRLELXXXXXXXXXXXX 294
            +P                      + +  P +KV+RN  +R+ NRL++            
Sbjct: 69   NPCKTDPQTRQGEEEEEEEEEGPDNKSNQPRVKVYRNMAQRKTNRLQVVVSPSGSNVDFV 128

Query: 295  GRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRLKGNSLLETEVSEGLA 474
            G +Y+GEAA  Q+C Y++GVLD+E++TLKI+PIASNKI RLEPR++ +     +VS  + 
Sbjct: 129  GSNYSGEAAAAQVCRYSLGVLDRETRTLKIIPIASNKIFRLEPRVRSSETANKDVSSSVK 188

Query: 475  EESVGTNKVERKVRELTLMYGTXXXXXXXXXXXXFFSQRNDASTDEHINSINHETD-EGN 651
             E    +K E K+ ELT +YGT                + D    + +N++  E D E  
Sbjct: 189  SELTTEDK-EDKMGELTALYGT----------------KKDRKKRKDLNNLKKEVDPESQ 231

Query: 652  DVLEDAVESIP--------------RNIPPHDLSADTPDKAYHLDEIIPIIERDDLFDIL 789
              L++ +E +               RNIPPHD SA TP +AY LD+II   + + L DI 
Sbjct: 232  KSLDEKIEQVAFNKEALGNTSALVARNIPPHDSSATTPVEAYPLDKIILKGDWEFLGDIY 291

Query: 790  EALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKHEHFE 969
              LE G +++S +YPTFV NR +KL  I+D+ EK +L+C+ S+I+HL  F D+   +   
Sbjct: 292  GLLEVGAEVASNAYPTFVCNRINKLEGIQDETEKRKLSCVFSFITHLVKFNDQFSMDRVA 351

Query: 970  HL---KIPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDL 1140
                 KIP    Q F   F DP   K + ++  L+I Y+LVLTL  D F+TDP+DIAKDL
Sbjct: 352  SAKGHKIPSIIRQRFFTMFTDPGLRKPSRDQINLLISYVLVLTLHADGFRTDPSDIAKDL 411

Query: 1141 KMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAPLRLP-EIIKPSRR 1275
            +M+++ L+P+F  LGCK     N      L  PL+ P E +K  R+
Sbjct: 412  RMSSIGLRPHFENLGCKLVRE-NNSIFTTLPVPLKFPSETLKRQRK 456


>ref|XP_006850502.1| hypothetical protein AMTR_s00035p00224680 [Amborella trichopoda]
            gi|548854148|gb|ERN12083.1| hypothetical protein
            AMTR_s00035p00224680 [Amborella trichopoda]
          Length = 451

 Score =  251 bits (642), Expect = 5e-64
 Identities = 157/442 (35%), Positives = 219/442 (49%), Gaps = 42/442 (9%)
 Frame = +1

Query: 82   KKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPHGHANGDPNIKVFRNKRRPNR---- 249
            ++RK K++ V ++       ++AP VGYFPSGFDP  H   D  +K+   +  PN     
Sbjct: 11   RERKRKKLKVELDVAEALDSYIAPCVGYFPSGFDPLRHNKNDGELKIKAYRAVPNYKSWC 70

Query: 250  LELXXXXXXXXXXXXGRSYAGEAAVPQICNYAVGVLDKESQTLKIVPIASNKILRLEPRL 429
            +++            G +Y GEAAV Q C+YA+GVLDKE Q L +VPIA +K+ R+EPR+
Sbjct: 71   MQVVVSPEGSNVDFVGTNYTGEAAVSQSCSYALGVLDKEKQILTVVPIAGDKVFRMEPRV 130

Query: 430  KGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXXFFSQRNDASTD 609
            +G    +    E    E+    K   K+R LTL +GT             F +  D  T 
Sbjct: 131  RGLQYEDAVYEEPKEVENTPQIKRSDKIRNLTLNFGTRQAKHSSMKRAAAFMKEEDLGTQ 190

Query: 610  EHINSINHETDEGNDV------LEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERD 771
            E + +   E  +   V      L  A + + RNIPP+D  A TPDKAY LD+II   E  
Sbjct: 191  EGLEAYVSEVGKSTSVMTKTEALYQATKQVVRNIPPYDTEATTPDKAYLLDKIISPNEWA 250

Query: 772  DLFDILEALESGT--------DISSKSYPTFVYNRRHKLREIKDQKEKGELACILSYISH 927
            +L D++E +E G+         + +  YP FV NR   ++++ D +EK +LACI SYI+H
Sbjct: 251  ELSDVMELVEVGSCGASALKFKMQNDYYPCFVRNRVGNIKKVHDIEEKKKLACIFSYITH 310

Query: 928  LCHFWDRQKHEHF------------------------EHLKIPRASYQNFTRTFLDPNSI 1035
            L  F   Q                                +IP     NF  TF      
Sbjct: 311  LLEFLALQTENELLRCLLKAQSQAIYDLGEEGKKIFGAGFRIPGIVLVNFLNTFFADRKE 370

Query: 1036 KLTAEKKELMIGYILVLTLFVDSFQTDPTDIAKDLKMTTMSLKPYFVQLGCKGKHVFNKP 1215
            K T EK +++I YILVLTLF D F TDP+DI KDLKM   +L+  +++LGCK        
Sbjct: 371  KFTKEKNDMVISYILVLTLFADGFTTDPSDICKDLKMKLPTLRKSYLELGCK-LSTAKTG 429

Query: 1216 TIWNLTAPLRLPEIIKPSRRNK 1281
            +I  L APL+ P +  P RR K
Sbjct: 430  SIVTLPAPLKFPTLTTPYRRRK 451


>ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221697 [Cucumis sativus]
            gi|449480549|ref|XP_004155927.1| PREDICTED:
            uncharacterized protein LOC101224839 [Cucumis sativus]
          Length = 435

 Score =  250 bits (639), Expect = 1e-63
 Identities = 155/409 (37%), Positives = 228/409 (55%), Gaps = 8/409 (1%)
 Frame = +1

Query: 73   SGSKKRKWKRVNVAMEGVSETADHVAPIVGYFPSGFDPHGHANGDPN----IKVFRNKRR 240
            S  KK++   ++  ++ +S       P+VGYFPSGFDPH  A+ + +     +V+++K R
Sbjct: 31   SEKKKKRVLSMDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNR 90

Query: 241  PNRLELXXXXXXXXXXXXGRSYAGEA-AVPQICNYAVGVLDKESQTLKIVPIASNKILRL 417
            PNR++L            G +Y GEA A  Q C YA+GVLDK +Q+LKIVPIASN I RL
Sbjct: 91   PNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRL 150

Query: 418  EPRLKGNSLLETEVSEGLAEESVGTNKVERKVRELTLMYGTXXXXXXXXXXXXFFSQRND 597
            +P+++G+ + E E      EE  G +K  R +RELT +YGT               Q +D
Sbjct: 151  DPKVRGSDVTENESPSVANEELSGQDKANR-MRELTALYGTKKSKKQAQKLHAL-KQEDD 208

Query: 598  ASTDEHINSINHETDEGNDVLEDAVESIPRNIPPHDLSADTPDKAYHLDEIIPIIERDDL 777
              T   ++          + LE     + RNIP ++ SA TP +AY LD+II   E   L
Sbjct: 209  PETKSDLDGRMKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFL 268

Query: 778  FDILEALESGTDISSKSYPTFVYNRRHKLREIKDQKEKGELACILSYISHLCHFWDRQKH 957
             D+   L+   +IS+ +YP+FV NR +KL++I+D++EK +L CI SYI+HL  + D+   
Sbjct: 269  EDLYFRLQETAEISA-TYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSM 327

Query: 958  EHFEHLK---IPRASYQNFTRTFLDPNSIKLTAEKKELMIGYILVLTLFVDSFQTDPTDI 1128
                  K   IP    Q F+  F    S +L+A+K  L+I ++LVL+LF D F +DP DI
Sbjct: 328  GDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADI 387

Query: 1129 AKDLKMTTMSLKPYFVQLGCKGKHVFNKPTIWNLTAPLRLPEIIKPSRR 1275
            AKDL+ +   L+ +F  LGCK     N  ++  L  PL+ PE+ +  RR
Sbjct: 388  AKDLRTSPYDLRLHFDNLGCKFIRK-NNLSLATLPIPLQFPELRQKRRR 435