BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00015855
         (1300 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   409   e-111
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   401   e-109
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   386   e-105
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   385   e-104
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   382   e-103
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           382   e-103
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   379   e-102
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   377   e-102
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   377   e-102
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   376   e-101
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               375   e-101
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               374   e-101
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   372   e-100
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                371   e-100
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       370   e-100
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   369   2e-99
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   362   1e-97
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   348   4e-93
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   347   8e-93
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   343   9e-92

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  409 bits (1052), Expect = e-111
 Identities = 191/436 (43%), Positives = 283/436 (64%), Gaps = 5/436 (1%)
 Frame = +1

Query: 7    LARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKS 186
            L R   + EI  AL  IG+ KAPG DG+++ FFK +W ++K +  + + EFF   ++ + 
Sbjct: 434  LIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRP 493

Query: 187  WNHTLIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRG 366
             N  ++ L+PK  HA++V+++RPI+CCTV YK+ISK+L  R+  +   +++ AQ+ F+ G
Sbjct: 494  INCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPG 553

Query: 367  RTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAW 546
            R I DNI LA EL+R YTRK +SPRC +KVD++KA+DSV W FL+ +L    FP+ ++ W
Sbjct: 554  RHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGW 613

Query: 547  IRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFH 726
            I EC++T S+SV++NGI          LRQGDP+SP+LF LCMEYLSR L       DF+
Sbjct: 614  IMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFN 673

Query: 727  FHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGI 906
            FHPKCE L I HL++ADDLL+F R D SS+  +  +  +F+  +GL A+  KS+IY  G+
Sbjct: 674  FHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGV 733

Query: 907  DPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYA 1086
            D  T  +L      Q+G +PFRYLG+P+ S+KL  +    L++ +T R  +W    LSYA
Sbjct: 734  DDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYA 793

Query: 1087 GKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWT-----SKNPPIAWSELVRP 1251
            G+ QLI S+L  ++ YW  + PL + VI  +  +CR F+WT     +K  P+AW+ + RP
Sbjct: 794  GRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRP 853

Query: 1252 KCEGGLGLRDLRAWNQ 1299
            K  GG  + +++ WN+
Sbjct: 854  KSRGGWNVINMKYWNR 869


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  401 bits (1031), Expect = e-109
 Identities = 192/438 (43%), Positives = 279/438 (63%), Gaps = 5/438 (1%)
 Frame = +1

Query: 1    AQLARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLL 180
            AQL +  T +EI  AL  I D KAPG DG++S FFK +W  +K +    +L+FF  G + 
Sbjct: 435  AQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMH 494

Query: 181  KSWNHTLIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFV 360
            K  N T + L+PK   A   +DYRPI+CC+  YK+ISK+L  RL  V   ++  AQT F+
Sbjct: 495  KPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFI 554

Query: 361  RGRTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYI 540
              R I DNI LA EL+R Y R+ +SPRC +KVD++KA+DSV W FL+ +L  L FP+++I
Sbjct: 555  PERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFI 614

Query: 541  AWIRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSD 720
             WI  C+ T S+S+++NGI          LRQGDPLSP+LF L MEYLSR +       +
Sbjct: 615  RWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPE 674

Query: 721  FHFHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMA 900
            F+FHPKCE +++ HL++ADDLL+F+R D SS+++++ + + F++ +GL A++ KS IY  
Sbjct: 675  FNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFG 734

Query: 901  GIDPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLS 1080
            G+     +QL       IG++PFRYLG+P+AS+KL  S    L+D +T R   W    LS
Sbjct: 735  GVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLS 794

Query: 1081 YAGKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMW-----TSKNPPIAWSELV 1245
            YAG+ QL+ ++L  ++ YW  + PLP+ +I  + + CR F+W     TS   P+AW  L 
Sbjct: 795  YAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQ 854

Query: 1246 RPKCEGGLGLRDLRAWNQ 1299
            +PK  GGL + ++  WN+
Sbjct: 855  QPKSTGGLNVTNMVLWNK 872


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  386 bits (992), Expect = e-105
 Identities = 194/433 (44%), Positives = 272/433 (62%), Gaps = 7/433 (1%)
 Frame = +1

Query: 22   TAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSA-VLEFFTTGQLLKSWNHT 198
            T ++IR+  FS+   K+PGPDG++  FF+  W  + D+  +A V EFF+ G LL   N T
Sbjct: 274  THDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNST 333

Query: 199  LIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRGRTIT 378
            +I LVPK A+ + + D+RPISCC  FYK+I+KLLA RL      ++ P+Q+ F+ GR I 
Sbjct: 334  IITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIG 393

Query: 379  DNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAWIREC 558
            DNI LAQE++ +Y +    PRCT  VD+ KA D+V WDF+   L A   P+  I WI+ C
Sbjct: 394  DNILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSC 453

Query: 559  ITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSD-FHFHP 735
            I++  FSV +NG +         LRQGDPLSPYLF + ME LS  + RR   S  F +H 
Sbjct: 454  ISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHW 513

Query: 736  KCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGIDPP 915
            +C+ L ++HL +ADDLL+F  GD +SV  L ++ S F  ++ L AN+++S I++AG+D  
Sbjct: 514  RCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGN 573

Query: 916  TRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYAGKA 1095
            + D +L +T F +G  P RYLGIP+ + KL++ D S LLD +  RI SW    LS+AG+ 
Sbjct: 574  SSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRL 633

Query: 1096 QLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWTSK-----NPPIAWSELVRPKCE 1260
            QLI SVL  ++ YW S L LP+ V+  I    R F+W           +AWSE+  PKCE
Sbjct: 634  QLIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCE 693

Query: 1261 GGLGLRDLRAWNQ 1299
            GGLG++DL  WN+
Sbjct: 694  GGLGIKDLHCWNK 706


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  385 bits (989), Expect = e-104
 Identities = 192/435 (44%), Positives = 277/435 (63%), Gaps = 5/435 (1%)
 Frame = +1

Query: 7    LARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKS 186
            L R  TAEEIR  LF +   K+PGPDGY+S+FFK TW+ + D+FT AV  FFT G L K 
Sbjct: 449  LIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKG 508

Query: 187  WNHTLIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRG 366
             N T++AL+PK   A +++DYRPISCC V YKVISK++A RL  V    +   Q+AFV+ 
Sbjct: 509  INSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKD 568

Query: 367  RTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAW 546
            R + +N+ LA EL+++Y +  IS RC +K+D+ KAFDSV W FL +V   L FP  +I W
Sbjct: 569  RLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHW 628

Query: 547  IRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFH 726
            I  CITT SFSV +NG +         LRQG  LSPYLF +CM+ LS+ L +      F 
Sbjct: 629  INICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFG 688

Query: 727  FHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGI 906
            +HPKC+ + + HL +ADDL++ S G + S+ ++++   +FA+ +GL  +L KS++Y+AG+
Sbjct: 689  YHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGL 748

Query: 907  DPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYA 1086
                R+++     F  G +P RYLG+P+ +++L  +D   LL+ + +RIGSW    LSYA
Sbjct: 749  SATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYA 808

Query: 1087 GKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWT-----SKNPPIAWSELVRP 1251
            G+  LISSVL  +  +W++   LP+  I  +  +C +F+W+     S    I+W  + +P
Sbjct: 809  GRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKP 868

Query: 1252 KCEGGLGLRDLRAWN 1296
            K EGGLGLR L+  N
Sbjct: 869  KDEGGLGLRSLKEAN 883


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  382 bits (980), Expect = e-103
 Identities = 194/438 (44%), Positives = 271/438 (61%), Gaps = 5/438 (1%)
 Frame = +1

Query: 1    AQLARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLL 180
            ++L +  T +EI++A  S+   K  GPDGYS +FF+ TW  +  +  +A+ EFF +GQLL
Sbjct: 301  SELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLL 360

Query: 181  KSWNHTLIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFV 360
            K WN T + L+PKT++A  + ++RPISC    YKVISKLL  RL  +   ++  +Q+AF+
Sbjct: 361  KQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFL 420

Query: 361  RGRTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYI 540
             GR++ +N+ LA E++  Y R  ISPR  LKVDL+KAFDSV W+F+   L AL  P  YI
Sbjct: 421  PGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYI 480

Query: 541  AWIRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSD 720
             WI +CITT SF++ +NG           LRQGDPLSPYLF L ME  S+ L  R     
Sbjct: 481  NWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGY 540

Query: 721  FHFHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMA 900
             H+HPK   L I+HL++ADD+++F  G  SS+  + E+L  FA  +GL  N  KS ++ A
Sbjct: 541  IHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQA 600

Query: 901  GIDPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLS 1080
            G+D   R       GF  G  P RYLG+P+  +KL+I+DY  LL+ L+ R+ SW    LS
Sbjct: 601  GLDLSERITSAAY-GFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALS 659

Query: 1081 YAGKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWTS-----KNPPIAWSELV 1245
            +AG+ QLISSV+ G+  +WMS   LP+G I +I S+C  F+W       K+  ++W +  
Sbjct: 660  FAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCC 719

Query: 1246 RPKCEGGLGLRDLRAWNQ 1299
             PK EGGLG R    WN+
Sbjct: 720  LPKSEGGLGFRSFGEWNK 737


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  382 bits (980), Expect = e-103
 Identities = 194/438 (44%), Positives = 271/438 (61%), Gaps = 5/438 (1%)
 Frame = +1

Query: 1    AQLARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLL 180
            ++L +  T +EI++A  S+   K  GPDGYS +FF+ TW  +  +  +A+ EFF +GQLL
Sbjct: 301  SELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLL 360

Query: 181  KSWNHTLIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFV 360
            K WN T + L+PKT++A  + ++RPISC    YKVISKLL  RL  +   ++  +Q+AF+
Sbjct: 361  KQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFL 420

Query: 361  RGRTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYI 540
             GR++ +N+ LA E++  Y R  ISPR  LKVDL+KAFDSV W+F+   L AL  P  YI
Sbjct: 421  PGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYI 480

Query: 541  AWIRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSD 720
             WI +CITT SF++ +NG           LRQGDPLSPYLF L ME  S+ L  R     
Sbjct: 481  NWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGY 540

Query: 721  FHFHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMA 900
             H+HPK   L I+HL++ADD+++F  G  SS+  + E+L  FA  +GL  N  KS ++ A
Sbjct: 541  IHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQA 600

Query: 901  GIDPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLS 1080
            G+D   R       GF  G  P RYLG+P+  +KL+I+DY  LL+ L+ R+ SW    LS
Sbjct: 601  GLDLSERITSAAY-GFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALS 659

Query: 1081 YAGKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWTS-----KNPPIAWSELV 1245
            +AG+ QLISSV+ G+  +WMS   LP+G I +I S+C  F+W       K+  ++W +  
Sbjct: 660  FAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCC 719

Query: 1246 RPKCEGGLGLRDLRAWNQ 1299
             PK EGGLG R    WN+
Sbjct: 720  LPKSEGGLGFRSFGEWNK 737


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  379 bits (974), Expect = e-102
 Identities = 184/436 (42%), Positives = 277/436 (63%), Gaps = 5/436 (1%)
 Frame = +1

Query: 7    LARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKS 186
            L R+ T EEI+  +FS+   K+PGPDGY+S+F+K +W+ + D+   A+  FF  G L K 
Sbjct: 170  LTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKG 229

Query: 187  WNHTLIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRG 366
             N T++AL+PK   A +++DYRPISCC V YK ISK+LA RL  +    +   Q+AFV+ 
Sbjct: 230  VNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKD 289

Query: 367  RTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAW 546
            R + +N+ LA EL+++Y +  IS RC +K+D+ KAFDS+ W FL  VLAA+ FP  +I W
Sbjct: 290  RLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHW 349

Query: 547  IRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFH 726
            I  C++T SFS+ +NG +         LRQG  LSPYLF + M+ LSR L +     +F 
Sbjct: 350  ISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFG 409

Query: 727  FHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGI 906
            +HP+C+ L + HL +ADDL++ + G + SV  +V+ L+QFA   GL   + K+++Y+AG+
Sbjct: 410  YHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGV 469

Query: 907  DPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYA 1086
               +R  + +   F +G +P RYLG+P+ +++L  SDYS L+D + RRIG W    LS+A
Sbjct: 470  SDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFA 529

Query: 1087 GKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWTS-----KNPPIAWSELVRP 1251
            G+  LI+SVL  +  +WM+   LP+  I+ I  I  + +W+      K   ++W E+ +P
Sbjct: 530  GRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKP 589

Query: 1252 KCEGGLGLRDLRAWNQ 1299
            K EGGLGL+ LR  N+
Sbjct: 590  KKEGGLGLQSLREANK 605


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  377 bits (969), Expect = e-102
 Identities = 185/436 (42%), Positives = 274/436 (62%), Gaps = 5/436 (1%)
 Frame = +1

Query: 7    LARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKS 186
            L R  T EEI+  LF++ + K+PGPDGY+S+FFK TW     DF +A+  FF  G L K 
Sbjct: 746  LTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKG 805

Query: 187  WNHTLIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRG 366
             N T++AL+PK   A +++DYRPISCC V YKVISK+LA RL  +    +   Q+AFV+ 
Sbjct: 806  LNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKE 865

Query: 367  RTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAW 546
            R + +N+ LA EL+++Y ++ ++PRC +K+D+ KAFDSV W FL + L AL FP  +  W
Sbjct: 866  RLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHW 925

Query: 547  IRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFH 726
            I+ CI+T +FSV +NG +         LRQG  LSPYLF +CM  LS  +    +  +  
Sbjct: 926  IKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIG 985

Query: 727  FHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGI 906
            +HPKCE + + HL +ADDL++F  G   S+  ++    +FA  +GL  +L KS+IY+AG+
Sbjct: 986  YHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGV 1045

Query: 907  DPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYA 1086
                R Q L+   F  G +P RYLG+P+ ++++  +DYS L++++  +I SW   +LSYA
Sbjct: 1046 SASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYA 1105

Query: 1087 GKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWTS-----KNPPIAWSELVRP 1251
            G+  L++SV+  +  +WMS   LP G I  I  +C +F+W+      K   IAWS + +P
Sbjct: 1106 GRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQP 1165

Query: 1252 KCEGGLGLRDLRAWNQ 1299
            K EGGLG++ L   N+
Sbjct: 1166 KKEGGLGIKSLAEANK 1181


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  377 bits (968), Expect = e-102
 Identities = 195/428 (45%), Positives = 268/428 (62%), Gaps = 5/428 (1%)
 Frame = +1

Query: 31   EIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKSWNHTLIAL 210
            +I+ A FS+   KA GPDGYSS+FFK  W  V  + T AV EFF +GQLLK WN T + L
Sbjct: 452  DIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVL 511

Query: 211  VPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRGRTITDNIH 390
            +PK  ++SK+ D+RPISC    YKVI+KLL  RL ++ + ++ P+Q+AF+ GR +++N+ 
Sbjct: 512  IPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVL 571

Query: 391  LAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAWIRECITTT 570
            LA E++  Y  K IS R  LKVDL+KAFDSV WDF+     AL  P  ++ WI +CI+T 
Sbjct: 572  LATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTP 631

Query: 571  SFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFHFHPKCEPL 750
             FSV++NG           LRQGDPLSPYLF L ME  S  L  R      H+HPK   L
Sbjct: 632  YFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADL 691

Query: 751  RIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGIDPPTRDQL 930
             I+HL++ADD+++F  G  SS+  + E+L  FA  +GL  N  K+++Y+AG D       
Sbjct: 692  SISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTD-EVEALA 750

Query: 931  LTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYAGKAQLISS 1110
            ++  GF I  +P RYLG+P+ S+KLKIS+Y      L +R  SW   +LS+AG+ QLI+S
Sbjct: 751  ISHYGFPISTLPIRYLGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITS 805

Query: 1111 VLQGVECYWMSVLPLPQGVIDRIYSICRSFMWT-----SKNPPIAWSELVRPKCEGGLGL 1275
            V+ G+  +WMS   L  G + +I S+C  F+W+     SK   IAWS +  PK EGG+GL
Sbjct: 806  VITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGL 865

Query: 1276 RDLRAWNQ 1299
            R    WN+
Sbjct: 866  RRFTPWNK 873


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  376 bits (965), Expect = e-101
 Identities = 189/431 (43%), Positives = 271/431 (62%), Gaps = 5/431 (1%)
 Frame = +1

Query: 22   TAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKSWNHTL 201
            ++E+I++A FS+   KA GPDG+S +FF   W  +  + T A+ EFFT+G+LLK WN T 
Sbjct: 345  SSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATN 404

Query: 202  IALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRGRTITD 381
            + L+PK  +AS + D+RPISC    YKVISKLL  RL +     +  +Q+AF+ GR   +
Sbjct: 405  LVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLE 464

Query: 382  NIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAWIRECI 561
            N+ LA EL+  Y +K I+P   LKVDL+KAFDSV WDF+   L AL  P  +  WI EC+
Sbjct: 465  NVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECL 524

Query: 562  TTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFHFHPKC 741
            +T SFSV++NG           LRQGDP+SPYLF L ME  S  L  R       +HPK 
Sbjct: 525  STASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKT 584

Query: 742  EPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGIDPPTR 921
              L I+HL++ADD+++F  G  SS+  +VESL  FA  +GL  N  K+ +Y AG+     
Sbjct: 585  SQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSES 644

Query: 922  DQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYAGKAQL 1101
            D + +  GF++G++P RYLG+P+ S+KL I++Y+ L++ +T R  SW    LS+AG+ QL
Sbjct: 645  DSMASY-GFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQL 703

Query: 1102 ISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWTSK-----NPPIAWSELVRPKCEGG 1266
            ++SV+ G+  +W+S   LP G I +I S+C  F+W+S+        +AWS++  PK EGG
Sbjct: 704  LASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGG 763

Query: 1267 LGLRDLRAWNQ 1299
            +GLR     N+
Sbjct: 764  IGLRRFAVSNR 774


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  375 bits (963), Expect = e-101
 Identities = 182/435 (41%), Positives = 279/435 (64%), Gaps = 5/435 (1%)
 Frame = +1

Query: 7    LARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKS 186
            L R+ +AEEI+  LFS+ + K+PGPDG++S+FFK +W+ +  +F  A+  FF  G L K 
Sbjct: 2    LTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKG 61

Query: 187  WNHTLIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRG 366
             N T++AL+PK   + +++DYRPISCC V YKVISK+LA RL  +    +   Q++FV+ 
Sbjct: 62   VNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKD 121

Query: 367  RTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAW 546
            R + +N+ LA +L+++Y +  IS RC +K+D+ KA DSV W FL + L A+ FP ++I W
Sbjct: 122  RLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHW 181

Query: 547  IRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFH 726
            IR CITT SFSV +NG +         LRQG  LSPYLF +CM+ LS+ L +        
Sbjct: 182  IRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIG 241

Query: 727  FHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGI 906
            +HP C+ + + HL +ADDL++ + G   S+  ++E    F++ +GL  ++ KS+I+ AG+
Sbjct: 242  YHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGL 301

Query: 907  DPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYA 1086
               +R QL T   F++G +P RYLG+P+ +++L   DY+ L++ + +RIGSW    LS+A
Sbjct: 302  SSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFA 361

Query: 1087 GKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWT-----SKNPPIAWSELVRP 1251
            G+  LISS++     +W+S   LP+  I  I  +C SF+W+     SK   I+W+++ +P
Sbjct: 362  GRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKP 421

Query: 1252 KCEGGLGLRDLRAWN 1296
            K EGGLGLR L+  N
Sbjct: 422  KSEGGLGLRSLKEAN 436


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  374 bits (960), Expect = e-101
 Identities = 186/435 (42%), Positives = 273/435 (62%), Gaps = 5/435 (1%)
 Frame = +1

Query: 7    LARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKS 186
            L R  ++EEI++ LFS+   K+PGPDGY+S+F+K TWD +  +FT  V  FF  G L K 
Sbjct: 96   LTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKG 155

Query: 187  WNHTLIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRG 366
             N  ++AL+PK   A +++DYRPISCC V YKVISK++A RL  +    +   Q+AFV+ 
Sbjct: 156  INSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKD 215

Query: 367  RTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAW 546
            R + +N+ LA EL+++Y +  IS RC +K+D+ KAFDSV W FL + L A+ F   +I W
Sbjct: 216  RLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHW 275

Query: 547  IRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFH 726
            I  CITT SFSV +NG +         LRQG  LSPYLF +CM+ LS+ L +      F 
Sbjct: 276  INLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFG 335

Query: 727  FHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGI 906
            FHPKC+ L + HL +ADDL++ S G   S+  ++E   +F + +GL  +L KS++YMAG+
Sbjct: 336  FHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGV 395

Query: 907  DPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYA 1086
             P  + ++     F +G +P RYLG+P+ +++L  +DYS LL+ + +RI +W     S+A
Sbjct: 396  SPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFA 455

Query: 1087 GKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMW-----TSKNPPIAWSELVRP 1251
            G+  LI SVL  +  +W++   LP+  I  I  +C SF+W     +S    I+W  + +P
Sbjct: 456  GRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKP 515

Query: 1252 KCEGGLGLRDLRAWN 1296
            K EGGLGLR+L+  N
Sbjct: 516  KAEGGLGLRNLKEAN 530


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  372 bits (954), Expect = e-100
 Identities = 193/428 (45%), Positives = 266/428 (62%), Gaps = 5/428 (1%)
 Frame = +1

Query: 31   EIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKSWNHTLIAL 210
            +I+ A FS+   KA GPDGYSS+FFK  W  V  + T AV EFF +GQLLK WN T + L
Sbjct: 452  DIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVL 511

Query: 211  VPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRGRTITDNIH 390
            +PK  ++SK+ D+RPISC    YKVI+KLL  RL ++ + ++ P+Q+AF+ GR +++N+ 
Sbjct: 512  IPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVL 571

Query: 391  LAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAWIRECITTT 570
            LA E++  Y  K IS R  LKVDL+KAFDSV WDF+     AL  P  ++ WI +CI+T 
Sbjct: 572  LATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTP 631

Query: 571  SFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFHFHPKCEPL 750
             FSV++NG           LRQGDPLSPYLF L ME  S  L  R       +HPK   L
Sbjct: 632  YFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADL 691

Query: 751  RIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGIDPPTRDQL 930
             I+HL++ADD+++F  G  SS+  + E+L  FA  +GL  N  K+++Y+AG D       
Sbjct: 692  SISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTD-EVEALA 750

Query: 931  LTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYAGKAQLISS 1110
            ++  GF I  +P RYLG+P+ S+KLKIS+Y      L +R  SW   +LS+AG+ QLI+S
Sbjct: 751  ISHYGFPISTLPIRYLGLPLMSRKLKISEY-----ELVKRFRSWAVKSLSFAGRVQLITS 805

Query: 1111 VLQGVECYWMSVLPLPQGVIDRIYSICRSFMWT-----SKNPPIAWSELVRPKCEGGLGL 1275
            V+ G+  +WMS   L  G + +I S+C  F+W+     SK   IAWS +  PK EGG+ L
Sbjct: 806  VITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVAL 865

Query: 1276 RDLRAWNQ 1299
            R    WN+
Sbjct: 866  RRFTPWNK 873


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  371 bits (953), Expect = e-100
 Identities = 186/436 (42%), Positives = 269/436 (61%), Gaps = 5/436 (1%)
 Frame = +1

Query: 7    LARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKS 186
            L R  T+EE +  LF++   K PGPDGY+S+FFK TW     DF +A+  FF  G L K 
Sbjct: 22   LTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKG 81

Query: 187  WNHTLIALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRG 366
             N T++AL+PK   A+ ++DYRPISCC V YKVISK++A RL  +    +   Q+AFVR 
Sbjct: 82   LNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRE 141

Query: 367  RTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAW 546
            R + +N+ LA EL+++Y +  ISPRC +K+D+ KAFDSV W FL + L AL FP  +  W
Sbjct: 142  RLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHW 201

Query: 547  IRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFH 726
            I+ CI+T +FSV +NG +         LRQG  LSPYLF +CM  LS  +    +  +  
Sbjct: 202  IKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIG 261

Query: 727  FHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGI 906
            +HPKC+ L + HL +ADDL++F  G   SV  ++    +FA  +GL  +L KS++Y+AG+
Sbjct: 262  YHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGV 321

Query: 907  DPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYA 1086
                R+ +L+   F  G +P RYLG+P+ ++++  +DYS LLD +  +I SW   +LSYA
Sbjct: 322  SELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 381

Query: 1087 GKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWTS-----KNPPIAWSELVRP 1251
            G+  LI+SV+  +  +WMS   LP G I  I  +C +F+W+      K   I W+ L + 
Sbjct: 382  GRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKL 441

Query: 1252 KCEGGLGLRDLRAWNQ 1299
            K EGGLG++ L   N+
Sbjct: 442  KQEGGLGIKSLLEANK 457


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  370 bits (949), Expect = e-100
 Identities = 192/429 (44%), Positives = 268/429 (62%), Gaps = 5/429 (1%)
 Frame = +1

Query: 28   EEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKSWNHTLIA 207
            E+IR+ALFS+   K+ GPDG++++FF  +W  V  + T A+ EFF++G LLK WN T I 
Sbjct: 450  EDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIV 509

Query: 208  LVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRGRTITDNI 387
            L+PK  + +   D+RPISC    YKVI++LL  RL  +   ++  AQ+AF+ GR++ +N+
Sbjct: 510  LIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENV 569

Query: 388  HLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAWIRECITT 567
             LA +L+  Y    ISPR  LKVDL+KAFDSV W+F+   L AL  P  +I WI +CI+T
Sbjct: 570  LLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCIST 629

Query: 568  TSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFHFHPKCEP 747
             +F+V ING           LRQGDPLSPYLF L ME  S  L  R      H+HPK   
Sbjct: 630  PTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASN 689

Query: 748  LRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGIDPPTRDQ 927
            L I+HL++ADD+++F  G   S+  + E+L  FA  +GL  N  KS +Y+AG++      
Sbjct: 690  LSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLN-QLESN 748

Query: 928  LLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYAGKAQLIS 1107
                 GF IG +P RYLG+P+ ++KL+I++Y  LL+ +T R  SW    LS+AG+ QLIS
Sbjct: 749  ANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLIS 808

Query: 1108 SVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWT-----SKNPPIAWSELVRPKCEGGLG 1272
            SV+ G   +WMS   LP+G I RI S+C  F+W+     +K   ++W+ L  PK EGGLG
Sbjct: 809  SVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLG 868

Query: 1273 LRDLRAWNQ 1299
            LR L  WN+
Sbjct: 869  LRRLLEWNK 877


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  369 bits (947), Expect = 2e-99
 Identities = 184/428 (42%), Positives = 264/428 (61%), Gaps = 5/428 (1%)
 Frame = +1

Query: 31   EIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKSWNHTLIAL 210
            +I+S  F++   K+PGPDGY+S+FFK TW  V     +AV EFF +G+LL  WN T + +
Sbjct: 450  DIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTM 509

Query: 211  VPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRGRTITDNIH 390
            VPK  +A ++ ++RPISCC   YKVISKLLA RL  +    + P+Q+AFV+GR +T+N+ 
Sbjct: 510  VPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVL 569

Query: 391  LAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAWIRECITTT 570
            LA EL++ + +  IS R  LKVDL+KAFDSV W F+ + L A   P  ++ WI++CIT+T
Sbjct: 570  LATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITST 629

Query: 571  SFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFHFHPKCEPL 750
            SFS+ ++G +         LRQGDPLSP LF + ME LSR L  +       +HPK   +
Sbjct: 630  SFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEV 689

Query: 751  RIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGIDPPTRDQL 930
            RI+ L +ADDL++F  G  SS+  +   L  F  ++GL  N  KS++Y AG++   ++  
Sbjct: 690  RISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDT 749

Query: 931  LTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYAGKAQLISS 1110
            L   GF  G  PFRYLG+P+  +KL+ SDYS L+D +  R   W   TLS+AG+ QLISS
Sbjct: 750  LAF-GFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISS 808

Query: 1111 VLQGVECYWMSVLPLPQGVIDRIYSICRSFMWTSK-----NPPIAWSELVRPKCEGGLGL 1275
            V+     +W+S   LP+  +  I  +C  F+W +      +  ++W     PK EGGLGL
Sbjct: 809  VIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGL 868

Query: 1276 RDLRAWNQ 1299
            R+   WN+
Sbjct: 869  RNFWTWNK 876


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  362 bits (930), Expect = 1e-97
 Identities = 182/426 (42%), Positives = 261/426 (61%), Gaps = 5/426 (1%)
 Frame = +1

Query: 22   TAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKSWNHTL 201
            T  E+    FSI   K+PGPDGY+ +FF+ TW  +  + T A+  FFT G L K  N T+
Sbjct: 720  TEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTI 779

Query: 202  IALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRGRTITD 381
            +AL+PK  +A +++DYRPISCC V YK ISKLLA RL  +    + P Q+AF+  R + +
Sbjct: 780  LALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLME 839

Query: 382  NIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAWIRECI 561
            N+ LA EL+++Y +  +SPRC +K+DL KAFDSV W FL + LAAL  P  +I WI  CI
Sbjct: 840  NLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCI 899

Query: 562  TTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFHFHPKC 741
            +T SFSV +NG           LRQG  LSPYLF +CM  LS  L +  +   F +HP+C
Sbjct: 900  STASFSVQVNG-----------LRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRC 948

Query: 742  EPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGIDPPTR 921
              + + HL +ADD+++FS G   S+  ++     FA  +GL  +L KS+++MA I   T 
Sbjct: 949  RNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETC 1008

Query: 922  DQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYAGKAQL 1101
              +L    F  G++P RYLG+P+ ++++ ++D   LL+ +  RI SW    LSYAG+ QL
Sbjct: 1009 ASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQL 1068

Query: 1102 ISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMW--TSKNP---PIAWSELVRPKCEGG 1266
            ++SV+  +  +W+S   LP+  I  I  I  +F+W  T  NP    +AW ++ +PK EGG
Sbjct: 1069 LNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGG 1128

Query: 1267 LGLRDL 1284
            LGLR L
Sbjct: 1129 LGLRSL 1134


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  348 bits (892), Expect = 4e-93
 Identities = 170/418 (40%), Positives = 260/418 (62%), Gaps = 5/418 (1%)
 Frame = +1

Query: 22   TAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKSWNHTL 201
            +AEEI   +FS+ + K+PGPDGY+++F+K  W+ +  +F  A+  FF  G L K  N T+
Sbjct: 342  SAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTI 401

Query: 202  IALVPKTAHASKVQDYRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRGRTITD 381
            +AL+PK   A +++DYRPISCC V YKVISK++A RL  V    +   Q+AFV+ R + +
Sbjct: 402  LALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIE 461

Query: 382  NIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAWIRECI 561
            N+ LA E++++Y +  +S RC LK+D+ KAFDSV W FL +VL A+ FP  +  WI  CI
Sbjct: 462  NVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCI 521

Query: 562  TTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFHFHPKC 741
            TT SFSV +NG +         LRQG  LSPYLF + M+ LS+ L +      F +HPKC
Sbjct: 522  TTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKC 581

Query: 742  EPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGIDPPTR 921
              + + HL +ADDL++ S G V S+  +V+ L +FA+ +GL  ++ KS++Y+AG+     
Sbjct: 582  RAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVY 641

Query: 922  DQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYAGKAQL 1101
             +++    F +G +P RYLG+P+ S++L  SD   L++ L ++I +W    LS+AG+  L
Sbjct: 642  QEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNL 701

Query: 1102 ISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMW-----TSKNPPIAWSELVRPKCE 1260
            ISS L  +  +WM+   LP+  I  I  +C +F+W     +S    ++W  + +PK E
Sbjct: 702  ISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLWSGTELSSNKAKVSWEAICKPKKE 759


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  347 bits (889), Expect = 8e-93
 Identities = 171/416 (41%), Positives = 256/416 (61%), Gaps = 5/416 (1%)
 Frame = +1

Query: 67   KAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLKSWNHTLIALVPKTAHASKVQD 246
            K+PGPDGY+ +FFK  W  +  D   A+  FF  G L K  N T++AL+ K    S ++D
Sbjct: 616  KSPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKD 675

Query: 247  YRPISCCTVFYKVISKLLAGRLAEVSDHLLHPAQTAFVRGRTITDNIHLAQELLRNYTRK 426
            YRPISCC V YK++SKL+A RL E+    + P Q+AF++ R + +N+ LA EL+++Y ++
Sbjct: 676  YRPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKE 735

Query: 427  RISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPAVYIAWIRECITTTSFSVVINGIMHX 606
             IS R  LK+D+ KAFD V W FL +VL A+  P ++I WI  CI T SFSV +NG +  
Sbjct: 736  SISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSG 795

Query: 607  XXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTIRSDFHFHPKCEPLRIAHLVYADDLL 786
                   LRQG  LSPYL+ +CM  LS  L +  +     +HP+C  + + HL +ADD++
Sbjct: 796  FFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADDIM 855

Query: 787  LFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSIYMAGIDPPTRDQLLTITGFQIGAMP 966
            +FS G   S+   +    +FA M+ L  +L KS+I+MAGI P  +  +L    F++G +P
Sbjct: 856  VFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLP 915

Query: 967  FRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKSTLSYAGKAQLISSVLQGVECYWMSV 1146
             +YLG+P+ ++++  SDY  L++ +  RI SW    LS+AG+ QLI SVL  +  +W+SV
Sbjct: 916  VKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSV 975

Query: 1147 LPLPQGVIDRIYSICRSFMWT-----SKNPPIAWSELVRPKCEGGLGLRDLRAWNQ 1299
              LP+  +  I  +  +F+W+     +K   IAWSE+ + K EGGLGL+ L+  N+
Sbjct: 976  FRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANE 1031


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  343 bits (880), Expect = 9e-92
 Identities = 183/440 (41%), Positives = 262/440 (59%), Gaps = 9/440 (2%)
 Frame = +1

Query: 4    QLARIPTAEEIRSALFSIGDLKAPGPDGYSSKFFKHTWDTVKDDFTSAVLEFFTTGQLLK 183
            +LA   + ++I+SA FS    K  GPDG+  +FFK TW  +  + T AV EFFT+  LLK
Sbjct: 391  ELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLK 450

Query: 184  SWNHTLIALVPKTAHASKVQDYRPISCCT----VFYKVISKLLAGRLAEVSDHLLHPAQT 351
             WN T + L+PK  +ASK+ D+RPISC        YKVI++LL  RL  +   ++ P Q+
Sbjct: 451  QWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQS 510

Query: 352  AFVRGRTITDNIHLAQELLRNYTRKRISPRCTLKVDLQKAFDSVHWDFLQDVLAALQFPA 531
            AF+ GR + +N+ LA EL++ Y R+ I PR  LKVDL+KAFDS+ WDF+   L A+  P 
Sbjct: 511  AFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPD 570

Query: 532  VYIAWIRECITTTSFSVVINGIMHXXXXXXXXLRQGDPLSPYLFGLCMEYLSRSLARRTI 711
             ++ WI +CI+T +FSV +NG           LRQG+PLSP+LF L ME  S  L  R  
Sbjct: 571  RFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQ 630

Query: 712  RSDFHFHPKCEPLRIAHLVYADDLLLFSRGDVSSVTQLVESLSQFAQMAGLTANLAKSSI 891
                H+HPK  PL I+HL++ADD+++F  G  SS+  + E+L  FA  +GL  N  K+ +
Sbjct: 631  AGYIHYHPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHL 690

Query: 892  YMAGIDPPTRDQLLTITGFQIGAMPFRYLGIPIASQKLKISDYSTLLDSLTRRIGSWPKS 1071
            Y+AG+D   R +  TI                  ++KL+I++Y  LL+ L +R  SW   
Sbjct: 691  YLAGLD---RIEASTI------------------ARKLRIAEYGPLLEKLAKRFRSWSVK 729

Query: 1072 TLSYAGKAQLISSVLQGVECYWMSVLPLPQGVIDRIYSICRSFMWT-----SKNPPIAWS 1236
             LS+AG+ QLI+SV+ G+  +W+S   LP+G + RI ++C  F+W+      K   +AWS
Sbjct: 730  CLSFAGRVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWS 789

Query: 1237 ELVRPKCEGGLGLRDLRAWN 1296
            E+  PK EGG+GLR     N
Sbjct: 790  EVCLPKEEGGVGLRRFTVLN 809