BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00015058
         (3217 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...  1141   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1139   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1128   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1127   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1119   0.0  
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...  1117   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1113   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1111   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1111   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1110   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1109   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1108   0.0  
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...  1107   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1106   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1105   0.0  
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...  1099   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...  1096   0.0  
ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [A...  1095   0.0  
ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrat...  1095   0.0  
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1095   0.0  

>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1141 bits (2952), Expect = 0.0
 Identities = 581/924 (62%), Positives = 686/924 (74%), Gaps = 5/924 (0%)
 Frame = +2

Query: 164  ISPRQSPLLLDPDGDSVA---CANGANFRSPWRGPGLGLDYPTEELKMVFFEEPIWVSPK 334
            + P   P+ + P  DS+      N  NF+ P       L  P E    +F ++P W++  
Sbjct: 57   LKPPPEPVHIPPLRDSIQDNIVENSMNFQIPMSE--FHLITPQESAPRIFIQDPPWIASL 114

Query: 335  YSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKKLA 511
            +    +  A +  +L+S   ERR YN LRRRQIKAETE WER V EYK LEKVM EKKLA
Sbjct: 115  FLKGIYKRANQELKLESKEIERRNYNVLRRRQIKAETEAWERMVDEYKDLEKVMREKKLA 174

Query: 512  PSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGLLPADKMAVIVMHKMMGL 691
            P+LPYV++LFLGWFEPLR+AI R+Q+ Q+TK+ KAA+A HI LLPADKMA+IVMHKMMGL
Sbjct: 175  PNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLPADKMALIVMHKMMGL 234

Query: 692  LMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRRNIGNDRNAILEKHEEIX 871
            +M             AAV IG AIEQE +I ++L K+K   ++  G      L K +EI 
Sbjct: 235  VMVGNQDGCVQVVQ-AAVHIGMAIEQEVRIHSFLEKTKNLQKKKTGVADEDGLSKEKEIL 293

Query: 872  XXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRLIELLLESAFVQVGSDRLED 1051
                          EV+KLL  E E++ WGRD QAKLG RLIELL E+A+VQ    +L D
Sbjct: 294  RKRVNGLIRRKRLNEVQKLLIKE-EMKPWGRDKQAKLGSRLIELLTETAYVQPPLSQLAD 352

Query: 1052 TIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXXXXXK 1228
            + P V+PAFRH  K +    G K V  YGVIECDPLV  GL+ TA+H            K
Sbjct: 353  SPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPK 412

Query: 1229 SWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRINKRIL 1408
             WKGYD GGHLFLPSY MRTHG+++Q DA+R++ R Q++KVFEALD LG TKWR+NK++L
Sbjct: 413  RWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALDMLGSTKWRVNKKVL 472

Query: 1409 DVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSLRCDI 1588
             VVE +W++GG IAGLVNR+D+ + D+  SEDL EI               E HS RCD 
Sbjct: 473  SVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQRCDT 532

Query: 1589 ELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSDLCRGILEFAEGKPLGKSGL 1768
            ELKLSVA K+  EEGFYYPHNLDFRGRAYPMH HLNHL+SDLCRG+LEFAEG+PLGKSGL
Sbjct: 533  ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL 592

Query: 1769 HWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDPICGKRWWITAEDPFQCLAA 1948
             WLKIHLAN+Y GGVEKLSY+ RL F++NH+ DIF+SA +P+ G RWW+TAEDP QCLAA
Sbjct: 593  RWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAA 652

Query: 1949 CIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNSLEAAAVNLVAGEKPEDVYS 2128
            CI+L +AL SP PHT +SHLPIHQDGSCNGLQHYAALGR+SLEAAAVNLV G+KP DVYS
Sbjct: 653  CINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVDGDKPADVYS 712

Query: 2129 GIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIK 2308
             IA RV EIM++DS KDP   P ALLA+IL+NQ+DRKLVKQTVMTSVYGVTYVGAREQIK
Sbjct: 713  EIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTSVYGVTYVGAREQIK 772

Query: 2309 RRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIMKWLGDCAKIIASENEPVRW 2488
            RRLEEKG+I DD+LLF A+CYAAKVT  ALGE+FQAAR IM WLGDCAK+IASEN+PVRW
Sbjct: 773  RRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRW 832

Query: 2489 TTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQKMGFPPNFVHSLDGSHMMM 2668
            TTPLGLPVVQPY  SERHLIRTSLQVL+LQRE  SV +++Q+  FPPNFVHSLDGSHMMM
Sbjct: 833  TTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFPPNFVHSLDGSHMMM 892

Query: 2669 TAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALYNNPILEKLLEGFKTSXXXX 2848
            TA++C++AGL FAGVHDS+WTH CDVD+MN ILRE+FV LY+ PILE LLE F+ S    
Sbjct: 893  TALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESLLESFQASYPAL 952

Query: 2849 XXXXXXERGDFDLKQVLESPYFFN 2920
                  ERGDFDL QVLESPYFFN
Sbjct: 953  TFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1139 bits (2947), Expect = 0.0
 Identities = 570/887 (64%), Positives = 688/887 (77%), Gaps = 8/887 (0%)
 Frame = +2

Query: 284  EELKMVFFEEPIWVSPKYSIEFDAARKIKR------LDSLREERRKYNSLRRRQIKAETE 445
            E +  +F ++P W+S    +  D   + +R      L+    ERR Y  LRRRQ+KAETE
Sbjct: 99   ESIPRIFVQDPPWISS--FLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETE 156

Query: 446  VWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYA 625
             WER V+EY+++E+ M EKKLAP+LPYV++LFLGWFEPLR+AI+++QR Q+TK+QKAAYA
Sbjct: 157  AWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYA 216

Query: 626  EHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSK 805
             HI LLPADKMAVIVMHKMMGL+M             AAVQIG AIEQE +I ++L K+K
Sbjct: 217  PHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQ-AAVQIGMAIEQEVRIHSFLEKTK 275

Query: 806  RPGR-RNIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKL 982
               R + +G+ +  + EK  EI              IEV+KL+KNE EI  WGRD QAKL
Sbjct: 276  NFERHKTVGHSQEGLREK--EILRKRVKSFIRKKKIIEVQKLVKNE-EITPWGRDTQAKL 332

Query: 983  GCRLIELLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLV 1159
            G RLIELL E+A+VQ   ++  D  P V+PAFRH  K +  E G K   +YGVIECDPLV
Sbjct: 333  GSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLV 392

Query: 1160 RKGLNNTARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQ 1339
              GL+ TA+H            K WKGYD GG+LFLPSY MRTHG+++QQDA++SVPR+Q
Sbjct: 393  LIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQ 452

Query: 1340 LKKVFEALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIX 1519
            L+KVFEALDTLG TKWRIN+R+L VVE +W++GG + GLV+R+++ L ++P +EDL EI 
Sbjct: 453  LQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQ 512

Query: 1520 XXXXXXXXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNH 1699
                          E HSLRCD E+KLSVA K+  EEGFYYPHNLDFRGRAYPMH HLNH
Sbjct: 513  NWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 572

Query: 1700 LNSDLCRGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNS 1879
            L+SDLCRG+LEFAEG+PLGKSGL WLKI LAN+Y GGVEKLSYD RL F++NHL D+F+S
Sbjct: 573  LSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDS 632

Query: 1880 AEDPICGKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAAL 2059
            A++P+ G RWW+TAEDPFQCLAACI+L +AL+S  PHT +SHLPIHQDGSCNGLQHYAAL
Sbjct: 633  ADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAAL 692

Query: 2060 GRNSLEAAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRK 2239
            GRNSLEA+AVNLVAGEKP DVYS IA RV EIM++DS KDP   P ALLAK+LI QVDRK
Sbjct: 693  GRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRK 752

Query: 2240 LVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAA 2419
            LVKQTVMTSVYGVTY+GAREQIKRRL EKG+I D++LLF A+CYAAKVT  ALGE+FQAA
Sbjct: 753  LVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAA 812

Query: 2420 RNIMKWLGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVS 2599
            R+IM WLG+CAK+IASEN+PV+WTTPLGLPV+QPY  SERHLIRTSLQVL+LQREG  V 
Sbjct: 813  RDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVV 872

Query: 2600 VKRQKMGFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEF 2779
            +++Q+  FPPNFVHSLDGSHMMMTA++C++AGL FAGVHDS+WTHACDVDKMN+ILRE+F
Sbjct: 873  IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKF 932

Query: 2780 VALYNNPILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            V LY+ PILE LLE F+TS          +RG+FDL++VLESPYFFN
Sbjct: 933  VELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 979


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 1128 bits (2917), Expect = 0.0
 Identities = 568/921 (61%), Positives = 687/921 (74%), Gaps = 2/921 (0%)
 Frame = +2

Query: 164  ISPRQSPLLLDPDGDSVACANGANFRSPWRGPGLGLDYPTEELKMVFFEEPIWVSPKY-S 340
            + P   P+   P  DSV      N  +      +    P  E + +F ++P W++  +  
Sbjct: 61   LRPPPDPIQFHPLNDSVQDNLVENLEN-----SIKFQVPISEPR-IFIQDPPWIASLFLK 114

Query: 341  IEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKKLAPSL 520
              F    K  +++S   +RRKYN LRRRQIKAETE WE+ V++YK LE+VM EKKLAPSL
Sbjct: 115  GMFKKVNKELKVESKEIDRRKYNLLRRRQIKAETEAWEKMVEDYKDLERVMREKKLAPSL 174

Query: 521  PYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGLLPADKMAVIVMHKMMGLLMX 700
            PYV++LFLGWFEPLR+AI ++Q+ Q+TK+ K A+A HI LLPADKMA+IVMHK+MGL+M 
Sbjct: 175  PYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLPADKMALIVMHKLMGLVMM 234

Query: 701  XXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRRNIGNDRNAILEKHEEIXXXX 880
                        AAV IG AIEQE +I ++L KSK   R+         L K +EI    
Sbjct: 235  GNQDGCVQVVQ-AAVHIGMAIEQEVRIHSFLEKSKSLQRKKTSVADEDGLSKEKEILRKR 293

Query: 881  XXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRLIELLLESAFVQVGSDRLEDTIP 1060
                      +EV+KLLK E +++ WGRD QAKLG RLIELL E+A VQ   D+L D  P
Sbjct: 294  VNGLIRRKRLVEVQKLLKKE-DMKPWGRDTQAKLGSRLIELLTETAHVQPPLDQLADGPP 352

Query: 1061 VVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXXXXXKSWK 1237
             V+PAFRH LK      G K V  YGVIECDPLV  GL+ TA+H            K WK
Sbjct: 353  DVRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTAKHMLIPYVPMLVPPKRWK 412

Query: 1238 GYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRINKRILDVV 1417
            GYD GGHLFLPSY MRTHG+++Q D +R++  +Q++KVFEALD LG TKWRINK++L+VV
Sbjct: 413  GYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEALDMLGSTKWRINKKVLNVV 472

Query: 1418 EILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSLRCDIELK 1597
            E +W++GG IAGLV+R+D+ + ++P SED  EI               E HS RCD ELK
Sbjct: 473  ESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQRCDTELK 532

Query: 1598 LSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSDLCRGILEFAEGKPLGKSGLHWL 1777
            LSVA ++  E+GFYYPHNLDFRGRAYPMH HLNHL+SDLCRG+LEFAEG+PLGKSGL WL
Sbjct: 533  LSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWL 592

Query: 1778 KIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDPICGKRWWITAEDPFQCLAACID 1957
            KIHLAN+Y GGVEKLSYD R++F++NH+ DIF+SA +P+ G RWW+TAEDP QCLAACI+
Sbjct: 593  KIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACIN 652

Query: 1958 LRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNSLEAAAVNLVAGEKPEDVYSGIA 2137
            L +AL SP PHT +SHLPIHQDGSCNGLQHYAALGR++LEAAAVNLVAGEKP DVYS IA
Sbjct: 653  LSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIA 712

Query: 2138 IRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRL 2317
            +RV +IM++DS KDP   P ALLAK+L+NQ+DRKLVKQTVMTSVYGVTYVGAREQIKRRL
Sbjct: 713  VRVHDIMKRDSNKDPTTNPNALLAKVLVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRL 772

Query: 2318 EEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIMKWLGDCAKIIASENEPVRWTTP 2497
            EEKG+I DD+LLF A+CYAAKVT  ALGE+FQAAR IM WLGDCAK+IASEN+PVRWTTP
Sbjct: 773  EEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTP 832

Query: 2498 LGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQKMGFPPNFVHSLDGSHMMMTAI 2677
            LGLPVVQPY  SERHLIRTSLQVL+LQRE   V V++Q+  FPPNFVHSLDGSHMMMTA+
Sbjct: 833  LGLPVVQPYCKSERHLIRTSLQVLALQRESNLVDVRKQRTAFPPNFVHSLDGSHMMMTAL 892

Query: 2678 SCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALYNNPILEKLLEGFKTSXXXXXXX 2857
            +C++AG+ FAGVHDS+WTHACDVD+MN+ILRE FV LY+ PILE LLE F+ +       
Sbjct: 893  ACRDAGIRFAGVHDSFWTHACDVDQMNQILRENFVELYSKPILENLLESFQAAYPELTFP 952

Query: 2858 XXXERGDFDLKQVLESPYFFN 2920
               ERGDFDL++VL+SPYFFN
Sbjct: 953  PLPERGDFDLQEVLKSPYFFN 973


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1127 bits (2915), Expect = 0.0
 Identities = 562/881 (63%), Positives = 683/881 (77%), Gaps = 2/881 (0%)
 Frame = +2

Query: 284  EELKMVFFEEPIWVSPKYSIEFDAARKIKRLDSLRE-ERRKYNSLRRRQIKAETEVWERA 460
            E  + +F ++P W S   SI      K  +L   RE ++RK+N LRRRQ+K ETE WER 
Sbjct: 134  EPRRRIFVQDPPWFS---SIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERM 190

Query: 461  VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 640
            V EYK+LE  M+EK+LAP+LP+++ LFLGWF PLR+AIER+Q++Q+TK+QKAAYA HI L
Sbjct: 191  VDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTKKQKAAYAPHIEL 250

Query: 641  LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 820
            LPADK+AVIVMHKMMGL+M             AAV IG AIEQE +I ++L K+K   R+
Sbjct: 251  LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ-AAVHIGMAIEQEIRIHSFLEKTKNYKRK 309

Query: 821  NIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRLIE 1000
             I  D   +L K +E+              +E +KLLKNE E + WGRD QAKLG RL+E
Sbjct: 310  KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVE 368

Query: 1001 LLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNN 1177
            LL+E+A+VQ   +  + + P V+PAFRH  K I    G K+  RYGV+ECDPLV  GL+ 
Sbjct: 369  LLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLAGLDR 428

Query: 1178 TARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFE 1357
            +A+H            K WKGY+ GG+LFLPSY MRTHG+++QQ+A++SV    +KKVFE
Sbjct: 429  SAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFE 488

Query: 1358 ALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXX 1537
            ALDTLG TKWR+NK++L V+E +W  GG IAGLV+R D+ + ++P SED+ E+       
Sbjct: 489  ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSV 548

Query: 1538 XXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSDLC 1717
                    E HS RCD ELKLSVA ++  EEGFYYPHNLDFRGRAYPMH HLNHL+SD+C
Sbjct: 549  RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 608

Query: 1718 RGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDPIC 1897
            RG+LEFAEG+PLGKSGL WLKIHLAN++ GGVEKLS+D RL F+ENHL +IF+SAE+PI 
Sbjct: 609  RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 668

Query: 1898 GKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNSLE 2077
            G RWW+TAEDPFQCLAACI+L +ALKS  PH+ +SHLPIHQDGSCNGLQHYAALGRN+LE
Sbjct: 669  GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 728

Query: 2078 AAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQTV 2257
            AAAVNLVAGEKP DVYS IA+RV EIM++DS KDP+  P ALLAKILI+QVDRKLVKQTV
Sbjct: 729  AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 788

Query: 2258 MTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIMKW 2437
            MTSVYGVT+VGAREQIKRRLEEKG I DD+ LF A+CYAAKVT  ALGE+F+AAR+IM W
Sbjct: 789  MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGW 848

Query: 2438 LGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQKM 2617
            LGDCAK+IASEN+PVRWTTPLGLPVVQPY  +ERHLIRTSLQVL+LQREG+SV +++Q+ 
Sbjct: 849  LGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGKSVEIRKQRT 908

Query: 2618 GFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALYNN 2797
             FPPNFVHSLDGSHMMMTA++C++AGLHFAGVHDS+WTHACDVD+MN+ILR++FV LYN 
Sbjct: 909  AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNM 968

Query: 2798 PILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            PILE LLE F+TS          ERG+FDL++VLESPYFFN
Sbjct: 969  PILENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1009


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1119 bits (2895), Expect = 0.0
 Identities = 559/881 (63%), Positives = 680/881 (77%), Gaps = 2/881 (0%)
 Frame = +2

Query: 284  EELKMVFFEEPIWVSPKYSIEFDAARKIKRLDSLRE-ERRKYNSLRRRQIKAETEVWERA 460
            E  + +F ++P W S   SI      K  +L   RE ++RK+N LRRRQ+K ETE WER 
Sbjct: 137  EPRRRIFVQDPPWFS---SIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERM 193

Query: 461  VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 640
            V EYK+LE  M+EK+LAP+LP+++ LFLGWF PL +AIER+Q++Q+TK+QKAAYA HI L
Sbjct: 194  VDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIEL 253

Query: 641  LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 820
            LPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I ++L K+K   R+
Sbjct: 254  LPADKMAVIVMHKMMGLVMAGHEDRCVQVVQ-AAVHIGMAIEQEIRIHSFLEKTKNYKRK 312

Query: 821  NIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRLIE 1000
             I  D   +L K +E+              +E +KLLKNE E + WGRD QAKLG RL+E
Sbjct: 313  KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVE 371

Query: 1001 LLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNN 1177
            LL+E+A+VQ   +  + + P V+PAFRH  K I    G K+  RYGV+ECDPLV +GL+ 
Sbjct: 372  LLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR 431

Query: 1178 TARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFE 1357
            +A+H            K WKGY+ GG+LFLPSY MRTHG+++QQ+A++SV    +KKVFE
Sbjct: 432  SAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFE 491

Query: 1358 ALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXX 1537
            ALDTLG TKWR+NK++L V+E +W  GG IAGLV+R D+ + ++P SED+ E+       
Sbjct: 492  ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV 551

Query: 1538 XXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSDLC 1717
                    E HS RCD ELKLSVA ++  EEGFYYPHNLDFRGRAYPMH HLNHL+SD+C
Sbjct: 552  RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611

Query: 1718 RGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDPIC 1897
            RG+LEFAEG+PLGKSGL WLKIHLAN++ GGVEKLS+D RL F+ENHL +IF+SAE+PI 
Sbjct: 612  RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671

Query: 1898 GKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNSLE 2077
            G RWW+TAEDPFQCLAACI+L +ALKS  PH+ +SHLPIHQDGSCNGLQHYAALGRN+LE
Sbjct: 672  GSRWWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731

Query: 2078 AAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQTV 2257
            AAAVNLVAGEKP DVYS IA+RV EIM++DS KD +  P ALLAKILI+QVDRKLVKQTV
Sbjct: 732  AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILIDQVDRKLVKQTV 791

Query: 2258 MTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIMKW 2437
            MTSVYGVT+VGAREQIKRRLEEKG I DD+ LF A+CYAAKVT  ALGE+F+AAR+IM W
Sbjct: 792  MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGW 851

Query: 2438 LGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQKM 2617
            LGDCAK+IASEN+PVRWTTPLGLPVVQPY  +ERHLIRTSLQVL+LQREG  V +++Q+ 
Sbjct: 852  LGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRT 911

Query: 2618 GFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALYNN 2797
             FPPNFVHSLDGSHMMMTA++C++AGLHFAGVHDS+WTHACDVD+MN+ILR++FV LYN 
Sbjct: 912  AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNM 971

Query: 2798 PILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            P+LE LLE F+TS          ERG+FDL++VLESPYFFN
Sbjct: 972  PMLENLLESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 1012


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1117 bits (2889), Expect = 0.0
 Identities = 558/883 (63%), Positives = 679/883 (76%), Gaps = 4/883 (0%)
 Frame = +2

Query: 284  EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 460
            E    +F ++P W+S  +    +    +  +++    E+RKYN LRRRQ+K ETE WE+ 
Sbjct: 99   ESTPRLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETEAWEKM 158

Query: 461  VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQK--AAYAEHI 634
            V+EY++L++ M EKKLAP+LPYV+ LFLGWFEP+R+AI R+Q++QK K +K  AAYA HI
Sbjct: 159  VEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRAAYAPHI 218

Query: 635  GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPG 814
             LLPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I  +L K+K   
Sbjct: 219  ELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQ-AAVHIGVAIEQEVRIHNFLEKTKNYQ 277

Query: 815  RRNIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRL 994
            R+   ++    L K +EI              +EV+KL+KNE EI+ WGRD QAKLG RL
Sbjct: 278  RKKTTDEVQG-LSKEKEILKKRVNSLIRRRRLVEVQKLVKNE-EIKPWGRDAQAKLGSRL 335

Query: 995  IELLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDGKSV-SRYGVIECDPLVRKGL 1171
            +ELL E+A+VQ   D+  D+ P VQPAFRH  K I  + GK +  RYGVIECDPL+  GL
Sbjct: 336  LELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLILSGL 395

Query: 1172 NNTARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKV 1351
            + +A+H            K WKGYD GG+LFLPSY MRTHG+++QQDA++ V  K+++KV
Sbjct: 396  DRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKKMQKV 455

Query: 1352 FEALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXX 1531
            FEALDTLG TKWR+NK++L VVE +W+ GG IAGLV+R DI + ++P SED  E      
Sbjct: 456  FEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKW 515

Query: 1532 XXXXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSD 1711
                      E HS RCD ELKLSVA K+ +EEGFYYPHNLDFRGRAYPMH HLNHL+SD
Sbjct: 516  SVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 575

Query: 1712 LCRGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDP 1891
            LCRG+LEFAEG+PLG+SGLHWLKIHLAN++ GGVEKLS+D RL F++NHL DIF+SAE+P
Sbjct: 576  LCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENP 635

Query: 1892 ICGKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNS 2071
            I G RWW+TAEDPFQCLAACI+L ++LKS  PH+ +S+LPIHQDGSCNGLQHYAALGR+S
Sbjct: 636  INGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDS 695

Query: 2072 LEAAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQ 2251
            LEAAAVNLVAGEKP DVYS IA+RV  IM++DS+KDP   P A LAK+LI+QVDRKLVKQ
Sbjct: 696  LEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRKLVKQ 755

Query: 2252 TVMTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIM 2431
            TVMTSVYGVT+VGAREQIKRRLEEKG I DD++LF A+CY AKVT  ALGE+FQAARNIM
Sbjct: 756  TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAARNIM 815

Query: 2432 KWLGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQ 2611
             WLGDCAK+IASEN+PV+WTTPLGLPVVQPY  SERHLIRTSLQVL+LQREG SV V++Q
Sbjct: 816  GWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVEVRKQ 875

Query: 2612 KMGFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALY 2791
            +  FPPNFVHSLDGSHMMMTA++C++AGLHFAGVHDS+WTHACDV+KMN+ILRE+FV LY
Sbjct: 876  RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKFVELY 935

Query: 2792 NNPILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            + P+LE L E  +TS          ERG+FDL++VL+SPYFFN
Sbjct: 936  SMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1113 bits (2879), Expect = 0.0
 Identities = 556/881 (63%), Positives = 675/881 (76%), Gaps = 2/881 (0%)
 Frame = +2

Query: 284  EELKMVFFEEPIWVSPKY-SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 460
            E  K VF ++P W+S  +    +  A K  +++    E+RKYN LRRRQI+ ETE WER 
Sbjct: 4    ESSKKVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERM 63

Query: 461  VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 640
              EY+ L + M E+KLAP+LPYV+ L LGWFEPL++AIE++Q+++K+K+QK+A++ +I L
Sbjct: 64   ADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIEL 123

Query: 641  LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 820
            LPADKMAVIVMHKMMGLLM             AAVQIG AIEQE +I  +L K+K   R+
Sbjct: 124  LPADKMAVIVMHKMMGLLMVGHEDGCVRVVQ-AAVQIGMAIEQEVRIHNFLEKTKNYQRK 182

Query: 821  NIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRLIE 1000
               ++    ++K +E+              +EV+ L+K + E + W R  QAKLG RLIE
Sbjct: 183  KTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQD-ETKPWSRGTQAKLGSRLIE 241

Query: 1001 LLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNN 1177
            LL E+A+VQ   ++ ED  P V+PAFRH+ K +    G K V +YGVIECDPL+  GL+ 
Sbjct: 242  LLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDG 301

Query: 1178 TARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFE 1357
            TA+H            K WKGYD GGHLFLPSY MRTHG+++QQ A+RSVP KQ++KVFE
Sbjct: 302  TAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFE 361

Query: 1358 ALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXX 1537
            ALDTLG TKWR+N+R+LDVVE +W+ GG IAGLV+R+DI + ++P S+DL EI       
Sbjct: 362  ALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSV 421

Query: 1538 XXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSDLC 1717
                    E HS RCD ELKLSVA KL  EEGFYYPHNLDFRGRAYPMH HL HL+SDLC
Sbjct: 422  RKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLC 481

Query: 1718 RGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDPIC 1897
            RG+LEF EG+PLGKSGL WLKIHLAN+Y GGVEKLS+D RL F+ENHL++IF+SA++P+ 
Sbjct: 482  RGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVN 541

Query: 1898 GKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNSLE 2077
            GKRWW+ AEDPFQCLAACI+L +AL S  PHT +SHLPIHQDGSCNGLQHYAALGR++LE
Sbjct: 542  GKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLE 601

Query: 2078 AAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQTV 2257
            AAAVNLVA EKP DVYS IA+RV EI+++DS KDP   P ALLAKIL++QVDRKLVKQTV
Sbjct: 602  AAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTV 661

Query: 2258 MTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIMKW 2437
            MTSVYGVTYVGAREQIKRRLEEKG I DD+LLF A+CY AKVT  ALGE+FQAAR+IM W
Sbjct: 662  MTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSW 721

Query: 2438 LGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQKM 2617
            LGDCAKIIASE++PV+WTTPLGLPVVQPY  +ERHLI+TSLQ+L+LQREG SV V++Q+ 
Sbjct: 722  LGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRT 781

Query: 2618 GFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALYNN 2797
             FPPNFVHSLDGSHMMMTA++C++AGL FAGVHDS+WTHA DVD MNRILRE+FV LYN 
Sbjct: 782  AFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNM 841

Query: 2798 PILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            PILE LLE F+TS          ERG+FDL++VL SPYFFN
Sbjct: 842  PILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1111 bits (2874), Expect = 0.0
 Identities = 562/881 (63%), Positives = 671/881 (76%), Gaps = 2/881 (0%)
 Frame = +2

Query: 284  EELKMVFFEEPIWVSPKY-SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 460
            E  K VF  +  W+S  Y       A K  +L+    E+RKYN LRRRQI+ ETE WER 
Sbjct: 104  ESSKRVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERM 163

Query: 461  VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 640
             +EY  L K M E+KLAP+LPYV+SLFLGWFEPL++AIER+Q+L+K+K+QK+A++ +I L
Sbjct: 164  AEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIEL 223

Query: 641  LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 820
            LPADKMAVIVMHKMMGL+M             AAVQIG AIEQE +I  +L K+K   R+
Sbjct: 224  LPADKMAVIVMHKMMGLVMVGHEDGCVRVVQ-AAVQIGIAIEQEVRIHNFLEKTKNHQRK 282

Query: 821  NIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRLIE 1000
               +D    ++K +E+              +EV+ L+  + E + W RD QAKLG RLIE
Sbjct: 283  KTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQD-ETKPWNRDKQAKLGSRLIE 341

Query: 1001 LLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGLNN 1177
            LL E+A+VQ   D+ E   P V+PAFRH+ K +    G K+V +YGVIECDPL+  GL+ 
Sbjct: 342  LLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDG 401

Query: 1178 TARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFE 1357
            TA+H            K W+GYD GGHLFLPSY MRTHG+++QQDA+RSVP KQ++KVFE
Sbjct: 402  TAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFE 461

Query: 1358 ALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXX 1537
            ALDTLG TKWR+N ++LDVVE +W+ GG  AGLVNR DI + ++  S+DL EI       
Sbjct: 462  ALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSV 521

Query: 1538 XXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSDLC 1717
                    E HS RCD ELKLSVA KL  EEGFYYPHNLDFRGRAYPMH HL HL+SDLC
Sbjct: 522  RKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLC 581

Query: 1718 RGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDPIC 1897
            RG+LEFAEG+PLGKSGL WLKIHLAN+Y GGVEKLS+D RL F+ENHL++IF+SAE+P+ 
Sbjct: 582  RGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVN 641

Query: 1898 GKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNSLE 2077
            GKRWW+TAEDPFQCLAACI+L +ALKS  PHT +SHLPIHQDGSCNGLQHYAALGR+S E
Sbjct: 642  GKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQE 701

Query: 2078 AAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQTV 2257
            AAAVNLVA EKP DVYS IA RV EI+++DS KDP   P ALLAK+LI++VDRKLVKQTV
Sbjct: 702  AAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVDRKLVKQTV 761

Query: 2258 MTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIMKW 2437
            MTSVYGVTYVGAREQIKRRLEEKG I DD++LF A+CYAAKVT  ALGE+FQAAR+IM W
Sbjct: 762  MTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMGW 821

Query: 2438 LGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQKM 2617
            LGDCAK+IASE++PVRWTTPLGLPVVQPY  ++RHLIRTSLQVL+LQREG SV V++Q+ 
Sbjct: 822  LGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRT 881

Query: 2618 GFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALYNN 2797
             FPPNFVHSLDGSHMMMTA++C++A L FAGVHDS+WTHA D D MNRILRE+FV LYN 
Sbjct: 882  AFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNM 941

Query: 2798 PILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            PILE LLE F+TS          ERG+FDL++VL SPYFFN
Sbjct: 942  PILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1111 bits (2873), Expect = 0.0
 Identities = 553/881 (62%), Positives = 674/881 (76%), Gaps = 2/881 (0%)
 Frame = +2

Query: 284  EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 460
            E  K +F ++P W++  +    +   +K  +L+ +  E+RKYN LRRRQIKAETE WE+ 
Sbjct: 99   ESSKRIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKM 158

Query: 461  VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 640
            V+EYK+LE+ M EKKLAP+LPYV+ LFLGWFEPL++AIE +Q+ Q++K+QKAA+A HI L
Sbjct: 159  VEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIEL 218

Query: 641  LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 820
            L ADKMAVIVM+KMMGLLM             AAVQIG AIEQE +IQ+ L K++   R 
Sbjct: 219  LSADKMAVIVMYKMMGLLMMAAQDGCVQVVQ-AAVQIGGAIEQEVRIQSILEKARSNQRT 277

Query: 821  NIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRLIE 1000
             +  D    L K +E+               EV+KLLK E E ++WGRD QAKLG RLIE
Sbjct: 278  KVRADTEC-LTKEKEVLRKQVNGLIRRRKLKEVQKLLKKE-EFKAWGRDTQAKLGSRLIE 335

Query: 1001 LLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDGKS-VSRYGVIECDPLVRKGLNN 1177
            LL+ESAF+Q    +  D+ P ++PAF H  K +    G++ V +YGV+ECDP+V  GL+ 
Sbjct: 336  LLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDR 395

Query: 1178 TARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFE 1357
            TA+H            K WKGYD GGH FLPSY MRTHG+  QQDA++++  KQ++KVFE
Sbjct: 396  TAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFE 455

Query: 1358 ALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXX 1537
            ALD LG TKWR+N+ +L VVE LW+QGG  AGLV+RKD+ + ++P   DL E+       
Sbjct: 456  ALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSM 514

Query: 1538 XXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSDLC 1717
                    E+HS RCD+ELKLSVA K+  EEGFYYPHNLDFRGRAYPMH HLNHL+SDLC
Sbjct: 515  KKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 574

Query: 1718 RGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDPIC 1897
            RG+LEFAEG+PLGKSGLHWLKIHLAN+Y GGVEKLSYD RL F+++HL +IF+SA +P+ 
Sbjct: 575  RGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVN 634

Query: 1898 GKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNSLE 2077
            G RWW+TAEDPFQCLAAC++L +ALKS  PHT +S+LPIHQDGSCNGLQHYAALGR++LE
Sbjct: 635  GDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLE 694

Query: 2078 AAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQTV 2257
            AAAVNLVAGEKP DVYS IA RV  IM +D+ KDP   P A LAK+LI+QVDRKLVKQTV
Sbjct: 695  AAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTV 754

Query: 2258 MTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIMKW 2437
            MTSVYGVTY+GAREQIKRRLEEKG+I DD+L FRASCYAAKVT  ALGE+F+AAR IM W
Sbjct: 755  MTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGW 814

Query: 2438 LGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQKM 2617
            LGDCAK+IA +N+PVRWTTPLGLPVVQPY  SERHLIRTSLQVL+LQREG  V V++Q+ 
Sbjct: 815  LGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRT 874

Query: 2618 GFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALYNN 2797
             FPPNFVHSLDGSHMM+TA++C++AGL FAGVHDS+WTHACDVD+MN ILRE+FV LY+ 
Sbjct: 875  AFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSM 934

Query: 2798 PILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            P+LE LLEGF+T+           RGDFDL++VL+SPYFFN
Sbjct: 935  PVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1110 bits (2870), Expect = 0.0
 Identities = 552/884 (62%), Positives = 669/884 (75%), Gaps = 5/884 (0%)
 Frame = +2

Query: 284  EELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVW 451
            E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQIKAETE W
Sbjct: 95   ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 154

Query: 452  ERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEH 631
            E+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIE++Q  + T + +AA+A H
Sbjct: 155  EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 214

Query: 632  IGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRP 811
            I  LPADKMAVIVMHK+MGLLM             AAVQIG A+E E +I  +L K+K+ 
Sbjct: 215  IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKL 274

Query: 812  GRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCR 991
             +   G      + K   I              +EV+KL+K+E E ESWGRD QAKLGCR
Sbjct: 275  QKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSE-EPESWGRDTQAKLGCR 333

Query: 992  LIELLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDGKS-VSRYGVIECDPLVRKG 1168
            L+ELL E+A+VQ   D+  DT P ++PAFRH+ K    + GK+ V +YGVIECDPLV  G
Sbjct: 334  LLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAG 393

Query: 1169 LNNTARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKK 1348
            ++ T +             K W+GYD GG+LFLPSY MRTHG++ QQDA+R VP KQ+++
Sbjct: 394  VDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQ 453

Query: 1349 VFEALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXX 1528
            V+EALDTLG TKWR+NKRIL+VVE +W+ GG IAGLV+RKD+ + +  +S+D+ E+    
Sbjct: 454  VYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWK 513

Query: 1529 XXXXXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNS 1708
                       E+HS RCD ELKLSVA KL  EEGFYYPHNLDFRGRAYPMH HLNHL+S
Sbjct: 514  WKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 573

Query: 1709 DLCRGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAED 1888
            DLCRGILEFAEG+PLGKSGL WLKIHLA++Y GGVEKL YD RL F+ENH+ DI +SA +
Sbjct: 574  DLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANN 633

Query: 1889 PICGKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRN 2068
            P+ G RWW+ AEDPFQCLAACI+L +ALKS  PHT +SHLPIHQDGSCNGLQHYAALGR+
Sbjct: 634  PLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRD 693

Query: 2069 SLEAAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVK 2248
            S+EAAAVNLVAGEKP DVY+ IA+RV  I++ DS KDP + P ALLAK+LI+QVDRKLVK
Sbjct: 694  SMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVK 753

Query: 2249 QTVMTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNI 2428
            QTVMTSVYGVTYVGAREQIKRRLEEKG+I DD+LLF ASCYAAKVT  ALGE+FQAAR  
Sbjct: 754  QTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGT 813

Query: 2429 MKWLGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKR 2608
            M WLGDCAK+IA EN+PVRWTTPLGLPVVQPY  ++RH+IRTSLQ+L+LQREG +V V++
Sbjct: 814  MTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRK 873

Query: 2609 QKMGFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVAL 2788
            Q+  FPPNFVHSLDGSHMMMTA++C++AGL FAGVHDS+WTHACDVD+MNRILRE+FV L
Sbjct: 874  QRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVEL 933

Query: 2789 YNNPILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            Y+ PILE LLE F+ S          +RGDF+L++VLESPYFFN
Sbjct: 934  YSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1109 bits (2869), Expect = 0.0
 Identities = 552/892 (61%), Positives = 671/892 (75%), Gaps = 5/892 (0%)
 Frame = +2

Query: 260  GLGLDYPTEELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQ 427
            G  L    E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQ
Sbjct: 126  GYPLVLQKESNKRVFIQDPPWVSSLFMNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQ 185

Query: 428  IKAETEVWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKR 607
            IKAETE WE+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIE++Q  + T++
Sbjct: 186  IKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQK 245

Query: 608  QKAAYAEHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQA 787
             + AYA HI  LPADKMAVIVMHK+MGLLM             AAVQIG A+E E +I  
Sbjct: 246  HRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHN 305

Query: 788  YLAKSKRPGRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRD 967
            ++ K+K+  +   G      + +   I              +EV+KL+++E E ESWGRD
Sbjct: 306  FMEKTKKHQKHMSGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSE-EPESWGRD 364

Query: 968  GQAKLGCRLIELLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDGKS-VSRYGVIE 1144
             QAKLGCRL+ELL E+A+VQ   D+  DT P ++PAFRH+ +    + GK+ V +YGVIE
Sbjct: 365  TQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIE 424

Query: 1145 CDPLVRKGLNNTARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRS 1324
            CDPLV  G++ T +             K W+GYD GG+LFLPSY MRTHG++ QQDA+RS
Sbjct: 425  CDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRS 484

Query: 1325 VPRKQLKKVFEALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSED 1504
            VP KQ+++V+EALDTLG TKWR+NKRIL VVE +W+ GG IAGLV+RKD+ + +   S+D
Sbjct: 485  VPAKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL-HSDD 543

Query: 1505 LNEIXXXXXXXXXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 1684
            + E+               E+HS RCD ELKLSVA KL  EEGFYYPHNLDFRGRAYPMH
Sbjct: 544  IMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMH 603

Query: 1685 SHLNHLNSDLCRGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLT 1864
             HLNHL+SDLCRGILEFAEG+PLGKSGL WLK+HLA++Y GG+EKL YD R+ F+ENH+ 
Sbjct: 604  PHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHID 663

Query: 1865 DIFNSAEDPICGKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQ 2044
            DI +SA +P+ G RWW+ AEDP QCLAACI+L +ALKSP PHT +SHLPIHQDGSCNGLQ
Sbjct: 664  DILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQ 723

Query: 2045 HYAALGRNSLEAAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILIN 2224
            HYAALGR+S+EAAAVNLVAGEKP DVY+ IA+RV  I++ DS KDP   P ALLAK+LI+
Sbjct: 724  HYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLID 783

Query: 2225 QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGE 2404
            QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG+I DD+LLF ASCYAAKVT  ALGE
Sbjct: 784  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGE 843

Query: 2405 MFQAARNIMKWLGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQRE 2584
            +FQAAR  M WLGDCAK+IASEN+PVRWTTPLGLPVVQPY  ++RH+IRTSLQVL+LQRE
Sbjct: 844  LFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE 903

Query: 2585 GQSVSVKRQKMGFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRI 2764
            G +V V++Q+  FPPNFVHSLDGSHMMMTA++C++AGLHFAGVHDS+WTHACDVD+MNRI
Sbjct: 904  GDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRI 963

Query: 2765 LREEFVALYNNPILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            LRE+FV LY+ PILE LLE F+ S          +RGDFDL++VLESPYFFN
Sbjct: 964  LREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLQEVLESPYFFN 1015


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1108 bits (2866), Expect = 0.0
 Identities = 552/881 (62%), Positives = 673/881 (76%), Gaps = 2/881 (0%)
 Frame = +2

Query: 284  EELKMVFFEEPIWVSPKYSIE-FDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 460
            E  K +F ++P W++  +    +   +K  +L+ +  E+RKYN LRRRQIKAETE WE+ 
Sbjct: 99   ESSKRIFIQDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKM 158

Query: 461  VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGL 640
            V+EYK+LE+ M EKKLAP+LPYV+ LFLGWFEPL++AIE +Q+ Q++K+QKAA+A HI L
Sbjct: 159  VEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIEL 218

Query: 641  LPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRR 820
            L ADKMA IVM+KMMGLLM             AAVQIG AIEQE +IQ+ L K++   R 
Sbjct: 219  LSADKMAGIVMYKMMGLLMMAAQDGCVQVVQ-AAVQIGGAIEQEVRIQSILEKARSNQRT 277

Query: 821  NIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRLIE 1000
             +  D    L K +E+               EV+KLLK E E ++WGRD QAKLG RLIE
Sbjct: 278  KVRADTEC-LTKEKEVLRKQVNGLIRRRKLKEVQKLLKKE-EFKAWGRDTQAKLGSRLIE 335

Query: 1001 LLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDGKS-VSRYGVIECDPLVRKGLNN 1177
            LL+ESAF+Q    +  D+ P ++PAF H  K +    G++ V +YGV+ECDP+V  GL+ 
Sbjct: 336  LLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDR 395

Query: 1178 TARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFE 1357
            TA+H            K WKGYD GGH FLPSY MRTHG+  QQDA++++  KQ++KVFE
Sbjct: 396  TAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFE 455

Query: 1358 ALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXX 1537
            ALD LG TKWR+N+ +L VVE LW+QGG  AGLV+RKD+ + ++P   DL E+       
Sbjct: 456  ALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSM 514

Query: 1538 XXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSDLC 1717
                    E+HS RCD+ELKLSVA K+  EEGFYYPHNLDFRGRAYPMH HLNHL+SDLC
Sbjct: 515  KKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLC 574

Query: 1718 RGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDPIC 1897
            RG+LEFAEG+PLGKSGLHWLKIHLAN+Y GGVEKLSYD RL F+++HL +IF+SA +P+ 
Sbjct: 575  RGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVN 634

Query: 1898 GKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNSLE 2077
            G RWW+TAEDPFQCLAAC++L +ALKS  PHT +S+LPIHQDGSCNGLQHYAALGR++LE
Sbjct: 635  GDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLE 694

Query: 2078 AAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQTV 2257
            AAAVNLVAGEKP DVYS IA RV  IM +D+ KDP   P A LAK+LI+QVDRKLVKQTV
Sbjct: 695  AAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTV 754

Query: 2258 MTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIMKW 2437
            MTSVYGVTY+GAREQIKRRLEEKG+I DD+L FRASCYAAKVT  ALGE+F+AAR IM W
Sbjct: 755  MTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGW 814

Query: 2438 LGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQKM 2617
            LGDCAK+IA +N+PVRWTTPLGLPVVQPY  SERHLIRTSLQVL+LQREG  V V++Q+ 
Sbjct: 815  LGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRT 874

Query: 2618 GFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALYNN 2797
             FPPNFVHSLDGSHMM+TA++C++AGL FAGVHDS+WTHACDVD+MN ILRE+FV LY+ 
Sbjct: 875  AFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSM 934

Query: 2798 PILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            P+LE LLEGF+T+           RGDFDL++VL+SPYFFN
Sbjct: 935  PVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1107 bits (2862), Expect = 0.0
 Identities = 553/847 (65%), Positives = 664/847 (78%), Gaps = 4/847 (0%)
 Frame = +2

Query: 392  ERRKYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDA 571
            E+RKYN LRRRQ+K ETE WE+ V+EY++L++ M EKKLAP+LPYV+ LFLGWFEP+R+A
Sbjct: 14   EKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREA 73

Query: 572  IERDQRLQKTKRQK--AAYAEHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAV 745
            I R+Q++QK K +K  AAYA HI LLPADKMAVIVMHKMMGL+M             AAV
Sbjct: 74   IAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQ-AAV 132

Query: 746  QIGEAIEQEFKIQAYLAKSKRPGRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKK 925
             IG AIEQE +I  +L K+K   R+   ++    L K +EI              +EV+K
Sbjct: 133  HIGVAIEQEVRIHNFLEKTKNYQRKKTTDEVQG-LSKEKEILKKRVNSLIRRRRLVEVQK 191

Query: 926  LLKNELEIESWGRDGQAKLGCRLIELLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPN 1105
            L+KNE EI+ WGRD QAKLG RL+ELL E+A+VQ   D+  D+ P VQPAFRH  K I  
Sbjct: 192  LVKNE-EIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISK 250

Query: 1106 EDGKSV-SRYGVIECDPLVRKGLNNTARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAM 1282
            + GK +  RYGVIECDPL+  GL+ +A+H            K WKGYD GG+LFLPSY M
Sbjct: 251  DPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVM 310

Query: 1283 RTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVN 1462
            RTHG+++QQDA++ V  K+++KVFEALDTLG TKWR+NK++L VVE +W+ GG IAGLV+
Sbjct: 311  RTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVD 370

Query: 1463 RKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYY 1642
            R DI + ++P SED  E                E HS RCD ELKLSVA K+ +EEGFYY
Sbjct: 371  RNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYY 430

Query: 1643 PHNLDFRGRAYPMHSHLNHLNSDLCRGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKL 1822
            PHNLDFRGRAYPMH HLNHL+SDLCRG+LEFAEG+PLG+SGLHWLKIHLAN++ GGVEKL
Sbjct: 431  PHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKL 490

Query: 1823 SYDRRLNFIENHLTDIFNSAEDPICGKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVS 2002
            S+D RL F++NHL DIF+SAE+PI G RWW+TAEDPFQCLAACI+L ++LKS  PH+ +S
Sbjct: 491  SHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLS 550

Query: 2003 HLPIHQDGSCNGLQHYAALGRNSLEAAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDP 2182
            +LPIHQDGSCNGLQHYAALGR+SLEAAAVNLVAGEKP DVYS IA+RV  IM++DS+KDP
Sbjct: 551  YLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDP 610

Query: 2183 NVVPAALLAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRA 2362
               P A LAK+LI+QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG I DD++LF A
Sbjct: 611  ATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAA 670

Query: 2363 SCYAAKVTFDALGEMFQAARNIMKWLGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERH 2542
            +CY AKVT  ALGE+FQAARNIM WLGDCAK+IASEN+PV+WTTPLGLPVVQPY  SERH
Sbjct: 671  ACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERH 730

Query: 2543 LIRTSLQVLSLQREGQS-VSVKRQKMGFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHD 2719
            LIRTSLQVL+LQREG S V V++Q+  FPPNFVHSLDGSHMMMTA++C++AGLHFAGVHD
Sbjct: 731  LIRTSLQVLALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHD 790

Query: 2720 SYWTHACDVDKMNRILREEFVALYNNPILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVL 2899
            S+WTHACDV+KMN+ILRE+FV LY+ P+LE L E  +TS          ERG+FDL++VL
Sbjct: 791  SFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVL 850

Query: 2900 ESPYFFN 2920
            +SPYFFN
Sbjct: 851  KSPYFFN 857


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score = 1106 bits (2861), Expect = 0.0
 Identities = 551/892 (61%), Positives = 670/892 (75%), Gaps = 5/892 (0%)
 Frame = +2

Query: 260  GLGLDYPTEELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQ 427
            G  L    E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQ
Sbjct: 118  GYPLVLQKESNKRVFIQDPPWVSSLFMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQ 177

Query: 428  IKAETEVWERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKR 607
            IKAETE WE+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIER+Q  + T++
Sbjct: 178  IKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQK 237

Query: 608  QKAAYAEHIGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQA 787
             + AYA HI  LPADKMAVIVMHK+MGLLM             AAVQIG A+E E +I  
Sbjct: 238  HRTAYAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHN 297

Query: 788  YLAKSKRPGRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRD 967
            ++ K+K+  +   G      + +   I              +EV+KL+++E E ESWGRD
Sbjct: 298  FMEKTKKHQKHMTGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSE-EPESWGRD 356

Query: 968  GQAKLGCRLIELLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDGKS-VSRYGVIE 1144
             QAKLGCRL+ELL E+A+VQ   D+  DT P ++PAFRH+ +    + GK+ V +YGVIE
Sbjct: 357  TQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIE 416

Query: 1145 CDPLVRKGLNNTARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRS 1324
            CDPLV  G++ T +             K W+GYD GG+LFLPSY MRTHG++ QQDA+RS
Sbjct: 417  CDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRS 476

Query: 1325 VPRKQLKKVFEALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSED 1504
            VP KQ+++V+EALDTLG TKWR+NKRIL VVE +W+ GG IAGLV+RKD+ + +   S+D
Sbjct: 477  VPAKQMQQVYEALDTLGSTKWRVNKRILSVVETIWAGGGNIAGLVDRKDVPIPEL-HSDD 535

Query: 1505 LNEIXXXXXXXXXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMH 1684
            + E+               E+HS RCD ELKLSVA KL  EEGFYYPHNLDFRGRAYPMH
Sbjct: 536  IMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMH 595

Query: 1685 SHLNHLNSDLCRGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLT 1864
             HLNHL+SDLCRGILEFAEG+PLGKSGL WLK+HLA++Y GG+EKL YD R+ F+ENH+ 
Sbjct: 596  PHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHID 655

Query: 1865 DIFNSAEDPICGKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQ 2044
            DI +SA +P+ G RWW+ AEDP QCLAACI+L +A+KS  PHT +SHLPIHQDGSCNGLQ
Sbjct: 656  DILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQ 715

Query: 2045 HYAALGRNSLEAAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILIN 2224
            HYAALGR+S+EAAAVNLVAGEKP DVY+ IA+RV  I++ DS KDP   P ALLAK+LI+
Sbjct: 716  HYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLID 775

Query: 2225 QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGE 2404
            QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG+I DD+LLF ASCYAAKVT  ALGE
Sbjct: 776  QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGE 835

Query: 2405 MFQAARNIMKWLGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQRE 2584
            +FQAAR  M WLGDCAK+IASEN+PVRWTTPLGLPVVQPY  ++RH+IRTSLQVL+LQRE
Sbjct: 836  LFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQRE 895

Query: 2585 GQSVSVKRQKMGFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRI 2764
            G +V V++Q+  FPPNFVHSLDGSHMMMTA++C++AGLHFAGVHDS+WTHACDVD+MNRI
Sbjct: 896  GDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRI 955

Query: 2765 LREEFVALYNNPILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            LRE+FV LY+ PILE LLE F+ S          +RGDFDL++VLESPYFFN
Sbjct: 956  LREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 1007


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1105 bits (2858), Expect = 0.0
 Identities = 553/884 (62%), Positives = 666/884 (75%), Gaps = 5/884 (0%)
 Frame = +2

Query: 284  EELKMVFFEEPIWVSPKYS----IEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVW 451
            E  K VF ++P WVS  +     +     + ++R     E RR+Y  LRRRQIKAETE W
Sbjct: 96   ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 155

Query: 452  ERAVQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEH 631
            E+ V+EY++LE+ M EKKLAP+LPYV+ L LGWFEPLR AIE++Q  + T + +AA+A H
Sbjct: 156  EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 215

Query: 632  IGLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRP 811
            I  LPADKMAVIVMHK+MGLLM             AAVQIG A+E E +I  +L K+K+ 
Sbjct: 216  IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKL 275

Query: 812  GRRNIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCR 991
             +   G      + +   I              +EV+KL+K+E E ESWGRD QAKLGCR
Sbjct: 276  QKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSE-EPESWGRDTQAKLGCR 334

Query: 992  LIELLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDGKS-VSRYGVIECDPLVRKG 1168
            L+ELL E+A+VQ   D+  DT P ++PAFRH+ +    + GKS V +YGVIECDPLV  G
Sbjct: 335  LLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAG 394

Query: 1169 LNNTARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKK 1348
            ++ T +             K W+GYD GG+LFLPSY MRTHG++ QQDA+RSVP KQ+++
Sbjct: 395  VDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQ 454

Query: 1349 VFEALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXX 1528
            V+EALDTLG TKWR+NKRIL VVE +W+ GG IAGLV+RKD+ + +   S+D+ E+    
Sbjct: 455  VYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPEL-HSDDIMEVKKWK 513

Query: 1529 XXXXXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNS 1708
                       E+HS RCD ELKLSVA KL  EEGFYYPHNLDFRGRAYPMH HLNHL+S
Sbjct: 514  WRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 573

Query: 1709 DLCRGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAED 1888
            DLCRGILEFAEG+PLGKSGL WLKIHLA++Y GG+EKL YD RL F+ENH+ DI +SA +
Sbjct: 574  DLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANN 633

Query: 1889 PICGKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRN 2068
            P+ G RWW+ AEDPFQCLAACI+L +ALKS  PHT  SHLPIHQDGSCNGLQHYAALGR+
Sbjct: 634  PLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRD 693

Query: 2069 SLEAAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVK 2248
            S+EAAAVNLVAG+KP DVY+ IA+RV  I++ DS KDP   P ALLAK+LI+QVDRKLVK
Sbjct: 694  SMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVK 753

Query: 2249 QTVMTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNI 2428
            QTVMTSVYGVTYVGAREQIKRRLEEKG+I DD+LLF ASCYAAKVT  ALGE+FQAAR  
Sbjct: 754  QTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGT 813

Query: 2429 MKWLGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKR 2608
            M WLGDCAK+IASEN+PVRWTTPLGLPVVQPY  ++RH+IRTSLQVL+LQREG +V V++
Sbjct: 814  MTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRK 873

Query: 2609 QKMGFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVAL 2788
            Q+  FPPNFVHSLDGSHMMMTA++C++AGL FAGVHDS+WTHACDVD+MNRILRE+FV L
Sbjct: 874  QRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVEL 933

Query: 2789 YNNPILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            Y+ PILE LLE F+ S          +RGDFDL +VLESPYFFN
Sbjct: 934  YSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score = 1099 bits (2842), Expect = 0.0
 Identities = 560/883 (63%), Positives = 666/883 (75%), Gaps = 7/883 (0%)
 Frame = +2

Query: 293  KMVFFEEPIWVSPKY----SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 460
            + +F ++P W+S  +    S   D   KI+R D    ++RK++SLRRRQ+K ETE WE+ 
Sbjct: 121  RRLFMQDPPWISALFLKGLSKMVDQTVKIERKDI---DKRKFDSLRRRQVKEETEAWEKM 177

Query: 461  VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQK--AAYAEHI 634
            V EY+ LEK M EK LAP+LPYV+ +FLGWF+PL+D IER+Q+LQK K +K  AAYA HI
Sbjct: 178  VDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHI 237

Query: 635  GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPG 814
             LLPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I  +L   KR  
Sbjct: 238  ELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQ-AAVSIGIAIEQEVRIHNFL---KRTR 293

Query: 815  RRNIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRL 994
            + N G+    + +K  ++              I+  K++K+E  I+ WGR  QAKLG RL
Sbjct: 294  KNNAGDSEEELKDK--QLLRKRVNSLIRRKRIIDALKVVKSE-GIKPWGRATQAKLGSRL 350

Query: 995  IELLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGL 1171
            +ELL+E+A+VQ    +  DTIP  +PAFRH  K +    G K V RYGVIECD L+  GL
Sbjct: 351  LELLIETAYVQPPLTQAGDTIPEFRPAFRHKFKTVTKYPGSKLVRRYGVIECDSLLLAGL 410

Query: 1172 NNTARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKV 1351
            + +A+H            K WKGYD GG+LFLPSY MRTHG+K+QQDA+R +  K   +V
Sbjct: 411  DKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISSKTAHRV 470

Query: 1352 FEALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXX 1531
            FEALDTLG TKWR+N++ILDVVE LW+ GG IAGLVNR+D+ + ++P SED  EI     
Sbjct: 471  FEALDTLGNTKWRVNRKILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSWKW 530

Query: 1532 XXXXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSD 1711
                      E HSLRCD+ELKLSVA K+  EEGFYYPHNLDFRGRAYPMH HLNHL+SD
Sbjct: 531  SVRKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 590

Query: 1712 LCRGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDP 1891
            LCRG LEFAEG+PLGKSGL+WLKIHLAN+Y GGVEKLS+D RL F+ENHL +I +SAE+P
Sbjct: 591  LCRGTLEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDNIMDSAENP 650

Query: 1892 ICGKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNS 2071
            I G+RWW+ AEDPFQCLAAC+ L  ALKSP P++ +SHLPIHQDGSCNGLQHYAALGR+S
Sbjct: 651  IHGQRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDS 710

Query: 2072 LEAAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQ 2251
             EAAAVNLVAGEKP DVYS I++RV EIM+KDS KDP   P A LAKILINQVDRKLVKQ
Sbjct: 711  FEAAAVNLVAGEKPADVYSEISLRVHEIMKKDSSKDPESNPTAALAKILINQVDRKLVKQ 770

Query: 2252 TVMTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIM 2431
            TVMTSVYGVTYVGAREQIKRRLEEKGVI D+++LF A+CYAAKVT  ALGE+F+AAR IM
Sbjct: 771  TVMTSVYGVTYVGAREQIKRRLEEKGVISDERMLFSAACYAAKVTLAALGEIFEAARAIM 830

Query: 2432 KWLGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQ 2611
             WLGDCAKIIAS+N PVRW TPLGLPVVQPY  SERHLIRTSLQVL+LQREG +V V++Q
Sbjct: 831  SWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQ 890

Query: 2612 KMGFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALY 2791
            +  FPPNFVHSLDG+HMMMTA++C+ AGL+FAGVHDSYWTHACDVD MNRILRE+FV LY
Sbjct: 891  RTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELY 950

Query: 2792 NNPILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            N PILE LL+ F+ S          +RGDFDLK+VL+S YFFN
Sbjct: 951  NTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score = 1096 bits (2835), Expect = 0.0
 Identities = 559/883 (63%), Positives = 663/883 (75%), Gaps = 7/883 (0%)
 Frame = +2

Query: 293  KMVFFEEPIWVSPKY----SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 460
            + +F ++P W+S  +    S   D   KI+R D    ++RK++SLRRRQ+K ETE WER 
Sbjct: 121  RRLFMQDPPWISALFLKGLSKMVDQTLKIERKDI---DKRKFDSLRRRQVKEETEAWERM 177

Query: 461  VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQK--AAYAEHI 634
            V EY+ LEK M EK LAP+LPYV+ +FLGWF+PL+D IER+Q+LQK K +K  AAYA HI
Sbjct: 178  VDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHI 237

Query: 635  GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPG 814
             LLPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I  +L   KR  
Sbjct: 238  ELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQ-AAVSIGIAIEQEVRIHNFL---KRTR 293

Query: 815  RRNIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRL 994
            + N G+ +  + EK  ++              I+  K++K+E   + WGR  QAKLG RL
Sbjct: 294  KNNAGDSQEELKEK--QLLRKRVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRL 350

Query: 995  IELLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGL 1171
            +ELL+E+A+VQ    +  D+IP  +PAFRH  K +    G K V RYGVIECD L+  GL
Sbjct: 351  LELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGL 410

Query: 1172 NNTARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKV 1351
            + +A+H            K WKGYD GG+LFLPSY MRTHG+K+QQDA++ +  K   +V
Sbjct: 411  DKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRV 470

Query: 1352 FEALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXX 1531
            FEALDTLG TKWR+N+ ILDVVE LW+ GG IAGLVNR+D+ + ++P SED  E+     
Sbjct: 471  FEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKW 530

Query: 1532 XXXXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSD 1711
                      E HSLRCD+ELKLSVA K+  EEGFYYPHNLDFRGRAYPMH HLNHL+SD
Sbjct: 531  SARKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 590

Query: 1712 LCRGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDP 1891
            LCRG LEFAEG+PLGKSGLHWLKIHLAN+Y GGVEKLS+D RL F+ENHL DI +SAE+P
Sbjct: 591  LCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENP 650

Query: 1892 ICGKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNS 2071
            I GKRWW+ AEDPFQCLAAC+ L  ALKSP P++ +SHLPIHQDGSCNGLQHYAALGR+S
Sbjct: 651  IHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDS 710

Query: 2072 LEAAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQ 2251
             EAAAVNLVAGEKP DVYS I+ RV EIM+KDS KDP   P A LAKILI QVDRKLVKQ
Sbjct: 711  FEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQ 770

Query: 2252 TVMTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIM 2431
            TVMTSVYGVTYVGAREQIKRRLEEKGVI D+++LF A+CY+AKVT  ALGE+F+AAR IM
Sbjct: 771  TVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIM 830

Query: 2432 KWLGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQ 2611
             WLGDCAKIIAS+N PVRW TPLGLPVVQPY  SERHLIRTSLQVL+LQREG +V V++Q
Sbjct: 831  SWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQ 890

Query: 2612 KMGFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALY 2791
            +  FPPNFVHSLDG+HMMMTA++C+ AGL+FAGVHDSYWTHACDVD MNRILRE+FV LY
Sbjct: 891  RTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELY 950

Query: 2792 NNPILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            N PILE LL+ F+ S          +RGDFDLK+VL+S YFFN
Sbjct: 951  NTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993


>ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [Amborella trichopoda]
            gi|548861119|gb|ERN18503.1| hypothetical protein
            AMTR_s00065p00022170 [Amborella trichopoda]
          Length = 987

 Score = 1095 bits (2833), Expect = 0.0
 Identities = 560/927 (60%), Positives = 670/927 (72%), Gaps = 7/927 (0%)
 Frame = +2

Query: 161  QISPRQSPLLLDPDGDSVACANGA---NFRSPWRGPGLG--LDYPTEELKMVFFEEPIWV 325
            Q+  RQ P L D   D +   +         PW    +   L   T +    F+     +
Sbjct: 65   QLGTRQCPQLFDKIEDPILTLDSTIDDTVNVPWIASQISEILPIQTPQAWSSFYASDSHI 124

Query: 326  SPKYSIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKK 505
                    D   ++K+  S    + K+N LRRRQ+K ETE WERAV+EY++L   M E+K
Sbjct: 125  KNITDEAIDG--ELKKKGSREMSKTKFNGLRRRQVKIETEAWERAVREYRELISEMCEQK 182

Query: 506  LAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGLLPADKMAVIVMHKMM 685
            LAP+LPY++SLFLGWFEPLRDAI  +Q LQ+TKR K  YA +IGLL ADKMAVIVMHK+M
Sbjct: 183  LAPNLPYMKSLFLGWFEPLRDAIAEEQALQETKRAKTGYAPYIGLLTADKMAVIVMHKLM 242

Query: 686  GLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRRN--IGNDRNAILEKH 859
            GL+M             AA QIGEA+E E +I  +L K+K+  RR   +G +  + L K 
Sbjct: 243  GLMMTGQDCGSVRVVQ-AACQIGEAVEHEARIHDFLEKTKKKSRRGKKVGEESES-LSKE 300

Query: 860  EEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRLIELLLESAFVQVGSD 1039
            +E                EV+KL++   +++ WG+D  AKLG RLIEL +++A++Q   D
Sbjct: 301  QENLRKRVTNLMKMQKLREVRKLVRQGDDVKPWGQDAHAKLGSRLIELFIKTAYIQPPVD 360

Query: 1040 RLEDTIPVVQPAFRHMLKHIPNEDGKSVSRYGVIECDPLVRKGLNNTARHXXXXXXXXXX 1219
            +  +  P ++PAFRH  +    +  K   RYGVIECDPLV KGL+ TARH          
Sbjct: 361  QQAEGPPEIRPAFRHTFRTFTKDRQKFCRRYGVIECDPLVHKGLDKTARHMVTAYTPMLI 420

Query: 1220 XXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRINK 1399
              K W+GYD GG+L LPS  MR HGAK+Q++A+++VP+KQL+ VFEALDTLG TKWR+NK
Sbjct: 421  RPKPWRGYDKGGYLVLPSQIMRIHGAKQQREAVKNVPQKQLQNVFEALDTLGSTKWRVNK 480

Query: 1400 RILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSLR 1579
            RILDVV  +W++GGGIAGLV+R+D+ L ++PD+ED  EI              SE HS R
Sbjct: 481  RILDVVNRVWARGGGIAGLVDREDVLLPEKPDTEDEMEIRKWRWSVKKAKKVNSERHSQR 540

Query: 1580 CDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSDLCRGILEFAEGKPLGK 1759
            CD+ELKLSVA K+  EEGFYYPHNLDFRGRAYPMH HLNHL SDLCRGILEFAEG+PLGK
Sbjct: 541  CDLELKLSVARKMREEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGK 600

Query: 1760 SGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDPICGKRWWITAEDPFQC 1939
            SGL W KIHLAN+Y  GV+KLSYD RL F+ENHL DIF+SAE P+ GKRWW+ AEDPFQC
Sbjct: 601  SGLRWSKIHLANLYACGVDKLSYDGRLAFVENHLDDIFDSAERPLEGKRWWLNAEDPFQC 660

Query: 1940 LAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNSLEAAAVNLVAGEKPED 2119
            LAAC++L +ALKSP P   +SH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKP D
Sbjct: 661  LAACMNLFEALKSPTPENVISHMPVHQDGSCNGLQHYAALGRDRLGAAAVNLVAGEKPAD 720

Query: 2120 VYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQTVMTSVYGVTYVGARE 2299
            VYSGIA RVLEIM++DSEK P   P A LA+ L++QVDRKLVKQTVMTSVYGVTY+GAR+
Sbjct: 721  VYSGIAARVLEIMKRDSEKGPASNPNAFLARALVDQVDRKLVKQTVMTSVYGVTYIGARD 780

Query: 2300 QIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIMKWLGDCAKIIASENEP 2479
            QI RRL+E+G I DD  LFRASCYAAKVT  ALGE FQAARNIM WLGDCAK+IASENEP
Sbjct: 781  QICRRLKERGHITDDSQLFRASCYAAKVTLTALGETFQAARNIMSWLGDCAKVIASENEP 840

Query: 2480 VRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQKMGFPPNFVHSLDGSH 2659
            VRWTTPLGLPVVQPYR   RHL++TSLQVL+LQRE  SV VKRQ+  F PNFVHSLDGSH
Sbjct: 841  VRWTTPLGLPVVQPYRKFARHLVKTSLQVLALQRESNSVMVKRQRTAFAPNFVHSLDGSH 900

Query: 2660 MMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALYNNPILEKLLEGFKTSX 2839
            MMMTAI+CK  GL+FAGVHDSYWTHACDVD+MN ILRE+FV LY+ PILE LLEGF+TS 
Sbjct: 901  MMMTAIACKKIGLNFAGVHDSYWTHACDVDEMNWILREKFVELYSMPILENLLEGFQTSF 960

Query: 2840 XXXXXXXXXERGDFDLKQVLESPYFFN 2920
                     ERGDFDL+ VLESPYFFN
Sbjct: 961  PTLVFPAVPERGDFDLRDVLESPYFFN 987


>ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
            gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis
            lyrata subsp. lyrata]
          Length = 990

 Score = 1095 bits (2833), Expect = 0.0
 Identities = 559/883 (63%), Positives = 662/883 (74%), Gaps = 7/883 (0%)
 Frame = +2

Query: 293  KMVFFEEPIWVSPKY----SIEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERA 460
            + +F ++P W+S  +    S   D   KI+R D    ++RK++SLRRRQ+K ETE WER 
Sbjct: 118  RRLFMQDPPWISALFLKGLSKMVDQTLKIERKDI---DKRKFDSLRRRQVKEETEAWERM 174

Query: 461  VQEYKQLEKVMLEKKLAPSLPYVQSLFLGWFEPLRDAIERDQRLQKTKRQK--AAYAEHI 634
            V EY+ LEK M EK LAP+LPYV+ +FLGWF+PL+D IER+Q+LQK K +K  AAYA HI
Sbjct: 175  VDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHI 234

Query: 635  GLLPADKMAVIVMHKMMGLLMXXXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPG 814
             LLPADKMAVIVMHKMMGL+M             AAV IG AIEQE +I  +L   KR  
Sbjct: 235  ELLPADKMAVIVMHKMMGLVMSGHEDGCIQVVQ-AAVSIGIAIEQEVRIHNFL---KRTR 290

Query: 815  RRNIGNDRNAILEKHEEIXXXXXXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRL 994
            + N G+ +  + EK  ++              I+  K++K E   + WGR  QAKLG RL
Sbjct: 291  KNNAGDSQEELKEK--QLLRKRVNSLIRRKRIIDALKVVKTE-GTKPWGRATQAKLGSRL 347

Query: 995  IELLLESAFVQVGSDRLEDTIPVVQPAFRHMLKHIPNEDG-KSVSRYGVIECDPLVRKGL 1171
            +ELL+E+A+VQ    +  D+IP  +PAFRH  K +    G K V RYGVIECD L+  GL
Sbjct: 348  LELLIEAAYVQPPLTQSGDSIPEFRPAFRHKFKTVTKYPGSKMVRRYGVIECDSLLLAGL 407

Query: 1172 NNTARHXXXXXXXXXXXXKSWKGYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKV 1351
            + +A+H            K WKGYD GG+LFLPSY MRTHG+K+QQDA+R +  K   +V
Sbjct: 408  DKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISHKTAHRV 467

Query: 1352 FEALDTLGRTKWRINKRILDVVEILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXX 1531
            FEALDTLG TKWR+N+ ILDVVE LW+ GG IAGLVNR+D+ + ++P SED  EI     
Sbjct: 468  FEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSWKW 527

Query: 1532 XXXXXXXXXSEMHSLRCDIELKLSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSD 1711
                      E HSLRCD+ELKLSVA K+  EEGFYYPHNLDFRGRAYPMH HLNHL+SD
Sbjct: 528  SVRKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 587

Query: 1712 LCRGILEFAEGKPLGKSGLHWLKIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDP 1891
            LCRG LEFAEG+PLGKSGLHWLKIHLAN++ GGVEKLS+D RL F+ENHL DI +SAE+P
Sbjct: 588  LCRGTLEFAEGRPLGKSGLHWLKIHLANLFAGGVEKLSHDARLAFVENHLDDIMDSAENP 647

Query: 1892 ICGKRWWITAEDPFQCLAACIDLRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNS 2071
            I GKRWW+ AEDPFQCLAAC+ L  AL+SP P++ +SHLPIHQDGSCNGLQHYAALGR+S
Sbjct: 648  IHGKRWWLKAEDPFQCLAACVILTQALRSPSPYSVISHLPIHQDGSCNGLQHYAALGRDS 707

Query: 2072 LEAAAVNLVAGEKPEDVYSGIAIRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQ 2251
             EAAAVNLVAGEKP DVYS I+ RV EIM+KDS KDP   P A LAKILI QVDRKLVKQ
Sbjct: 708  FEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQ 767

Query: 2252 TVMTSVYGVTYVGAREQIKRRLEEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIM 2431
            TVMTSVYGVTYVGAREQIKRRLEEKGVI D+++LF A+CY+AKVT  ALGE+F+AAR IM
Sbjct: 768  TVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIM 827

Query: 2432 KWLGDCAKIIASENEPVRWTTPLGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQ 2611
             WLGDCAKIIAS+N PVRW TPLGLPVVQPY  SERHLIRTSLQVL+LQREG +V V++Q
Sbjct: 828  SWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQ 887

Query: 2612 KMGFPPNFVHSLDGSHMMMTAISCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALY 2791
            +  FPPNFVHSLDG+HMMMTA++C+ AGL+FAGVHDSYWTHACDVD MNRILRE+FV LY
Sbjct: 888  RTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELY 947

Query: 2792 NNPILEKLLEGFKTSXXXXXXXXXXERGDFDLKQVLESPYFFN 2920
            N PILE LL+ F+ S          +RGDFDLK+VL+S YFFN
Sbjct: 948  NTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 990


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1095 bits (2831), Expect = 0.0
 Identities = 553/921 (60%), Positives = 686/921 (74%), Gaps = 1/921 (0%)
 Frame = +2

Query: 161  QISPRQSPLLLDPDGDSVACANGANFRSPWRGPGLGLDYPTEELKMVFFEEPIWVSPKYS 340
            Q SP QS ++LD   + +A     +FR+  +  G            +F ++P WV+  + 
Sbjct: 83   QPSP-QSQIILDSPEEELAEKMDGHFRNSDKIKGSS---------RIFMQDPPWVNTLFM 132

Query: 341  IEFDAARKIKRLDSLREERRKYNSLRRRQIKAETEVWERAVQEYKQLEKVMLEKKLAPSL 520
                 +    RL+    ER KYN LRRRQIKAETE WE  V+EY++  + M +KKLAP+L
Sbjct: 133  KGLVDSNTGLRLEFKEIEREKYNLLRRRQIKAETEAWESMVEEYREFVREMRDKKLAPNL 192

Query: 521  PYVQSLFLGWFEPLRDAIERDQRLQKTKRQKAAYAEHIGLLPADKMAVIVMHKMMGLLMX 700
            P V++LFLGWFEPL+ AIE++Q+ Q++++QKA Y  HI +LPADKMAVIVMHKMM LLM 
Sbjct: 193  PQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHIDMLPADKMAVIVMHKMMSLLMV 252

Query: 701  XXXXXXXXXXXXAAVQIGEAIEQEFKIQAYLAKSKRPGRRNIGNDRNAILEKHEEIXXXX 880
                        AA+QIG AIEQE KI ++L K+K    R   +D    L K +EI    
Sbjct: 253  GNDAGCVRLVQ-AALQIGTAIEQEIKIHSFLEKTKNI--RKNASDLPEDLLKEKEIQRNR 309

Query: 881  XXXXXXXXXXIEVKKLLKNELEIESWGRDGQAKLGCRLIELLLESAFVQVGSDRLEDTIP 1060
                       E  KL+ +E + +SW +D QAKLG RLIELL+++A++Q  + +  DT P
Sbjct: 310  VKSLIKRKRLFEAAKLVTSE-DSKSWSQDTQAKLGSRLIELLIDTAYIQHPTSQSADTPP 368

Query: 1061 VVQPAFRHMLKHIPNEDGKSV-SRYGVIECDPLVRKGLNNTARHXXXXXXXXXXXXKSWK 1237
             V+PAFRH  K + NE G+ V  RYGVIECDPLV KG++ +AR+            K+WK
Sbjct: 369  DVRPAFRHKFKILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNWK 428

Query: 1238 GYDLGGHLFLPSYAMRTHGAKEQQDAIRSVPRKQLKKVFEALDTLGRTKWRINKRILDVV 1417
            GYD GG+LFLPSY MRTHG+++QQDA+R  P +Q++KVFEAL+TLG TKWRIN+++L VV
Sbjct: 429  GYDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTLGHTKWRINRKVLGVV 488

Query: 1418 EILWSQGGGIAGLVNRKDIQLSDRPDSEDLNEIXXXXXXXXXXXXXXSEMHSLRCDIELK 1597
            E LW+ GG I GLVN  D+ L ++P +ED  EI               E H+LRCD+ELK
Sbjct: 489  ENLWASGGNIGGLVNCDDVPLPEKPLTEDPAEIDTWKWSVRKAKKINRERHALRCDVELK 548

Query: 1598 LSVACKLSSEEGFYYPHNLDFRGRAYPMHSHLNHLNSDLCRGILEFAEGKPLGKSGLHWL 1777
            +SVA K+  EEGFYYPHNLDFRGRAYPMH HLNHL+SDLCRG+LEFA G+PLGK+GLHWL
Sbjct: 549  ISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFASGRPLGKTGLHWL 608

Query: 1778 KIHLANIYGGGVEKLSYDRRLNFIENHLTDIFNSAEDPICGKRWWITAEDPFQCLAACID 1957
            KIHLAN+Y GGV+KLSY+ R  F+ENHL ++F+SA +PI G RWW++AEDPFQCLAACID
Sbjct: 609  KIHLANVYAGGVDKLSYEARAAFVENHLEEVFDSATNPINGNRWWLSAEDPFQCLAACID 668

Query: 1958 LRDALKSPLPHTTVSHLPIHQDGSCNGLQHYAALGRNSLEAAAVNLVAGEKPEDVYSGIA 2137
            L  AL S  PH+ +S+LPIHQDGSCNGLQHYAALGR+S EAAAVNLVAGE+P DVYS IA
Sbjct: 669  LTGALNSSSPHSFISYLPIHQDGSCNGLQHYAALGRDSKEAAAVNLVAGEEPADVYSEIA 728

Query: 2138 IRVLEIMQKDSEKDPNVVPAALLAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRL 2317
            +RV EIM+KDS KDP   P A+LAK+L++QVDRKLVKQTVMTSVYGVT+VGAREQIKRRL
Sbjct: 729  VRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 788

Query: 2318 EEKGVIKDDKLLFRASCYAAKVTFDALGEMFQAARNIMKWLGDCAKIIASENEPVRWTTP 2497
            EEKGVI DD+LLF A+CY+AKVT  ALG++FQAAR IM WLGDCAK+IASEN+PVRWTTP
Sbjct: 789  EEKGVITDDRLLFSAACYSAKVTMSALGQLFQAARGIMDWLGDCAKVIASENQPVRWTTP 848

Query: 2498 LGLPVVQPYRNSERHLIRTSLQVLSLQREGQSVSVKRQKMGFPPNFVHSLDGSHMMMTAI 2677
            LGLPVVQPY  S+RHLI+TSLQVL+LQ+EG+ + VK+Q+  FPPN+VHSLDG+HMMMTA+
Sbjct: 849  LGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIEVKKQRTAFPPNYVHSLDGTHMMMTAV 908

Query: 2678 SCKNAGLHFAGVHDSYWTHACDVDKMNRILREEFVALYNNPILEKLLEGFKTSXXXXXXX 2857
            +C++AGL FAGVHDS+WTHACDV+KMN+ILR +FV LYN PILE LLE F+T+       
Sbjct: 909  ACRDAGLQFAGVHDSFWTHACDVEKMNQILRVKFVELYNMPILENLLESFQTAYPASTFP 968

Query: 2858 XXXERGDFDLKQVLESPYFFN 2920
               ERGDFDL++VLESPYFFN
Sbjct: 969  PLPERGDFDLEEVLESPYFFN 989