BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00014974
         (1549 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca...   633   e-179
emb|CBI28783.3| unnamed protein product [Vitis vinifera]              632   e-178
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   632   e-178
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 627   e-177
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]                621   e-175
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ...   619   e-175
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr...   619   e-175
ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citr...   618   e-174
ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ...   618   e-174
ref|XP_002317355.1| DNA topoisomerase family protein [Populus tr...   617   e-174
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]       616   e-174
gb|AFW61219.1| DNA topoisomerase I [Zea mays]                         615   e-173
gb|ACL52396.1| unknown [Zea mays]                                     615   e-173
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b...   614   e-173
ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|A...   612   e-172
ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g...   611   e-172
gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indi...   611   e-172
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]               611   e-172
dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]             610   e-172
ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [S...   610   e-172

>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
            gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
            isoform 1 [Theobroma cacao]
          Length = 904

 Score =  633 bits (1632), Expect = e-179
 Identities = 318/413 (76%), Positives = 347/413 (84%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK+RIRP+DITINIGKD PIP+CPIPGERWK++KHDNTVTWLAFWNDPI
Sbjct: 503  RGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGERWKDIKHDNTVTWLAFWNDPI 562

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPKEFKYVFLAASSSLKGQSDKEKYEK+R+LKDYI++IRA YT+DF +KD  KRQI+VAT
Sbjct: 563  NPKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRAAYTKDFTTKDVMKRQIAVAT 622

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV NVE +PPNKLKFDFLGKDSI+Y+NTV
Sbjct: 623  YLIDKLALRAGNEKDDDEAD----TVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTV 678

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE PVY AIG F+T K  +               TSKLNAHLKELMPGLTAKVFRTYNA
Sbjct: 679  EVELPVYKAIGQFQTGKSKSDDLFDKLD-------TSKLNAHLKELMPGLTAKVFRTYNA 731

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD +LNKET+DG V EKV VYQ ANKEVAIICNHQRS+SKSH  QMS+L EKI +LK
Sbjct: 732  SITLDEMLNKETKDGDVAEKVVVYQRANKEVAIICNHQRSISKSHSAQMSRLTEKITELK 791

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
               +EL  DL RAK  KPPL+D DGK K+NL PQAI+ KI Q +AKIEKME D Q KEDL
Sbjct: 792  GVLKELKIDLDRAKKGKPPLKDADGKQKRNLTPQAIQKKIDQTNAKIEKMERDMQTKEDL 851

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSLLAKF WAMDVDP+FRF
Sbjct: 852  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPDFRF 904


>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  632 bits (1629), Expect = e-178
 Identities = 315/413 (76%), Positives = 346/413 (83%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLKKRI P+DITINIGK+ P+P+CPIPGERWKEV+HDNTVTWLAFWNDPI
Sbjct: 323  RGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVTWLAFWNDPI 382

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPKEFKYVFLAASSSLKGQSDKEKYEK+RLLKDYIQ+IRA YT+DF +KD  KRQI+VAT
Sbjct: 383  NPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQIAVAT 442

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKVENV LVPPNKL+FDFLGKDSIRY NTV
Sbjct: 443  YLIDKLALRAGNEKDDDEAD----TVGCCTLKVENVALVPPNKLEFDFLGKDSIRYFNTV 498

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE PVY AIG F+T K                  TSKLNAHLKELMPGLTAKVFRTYNA
Sbjct: 499  EVELPVYKAIGQFKTGKSGGDDLFDKLD-------TSKLNAHLKELMPGLTAKVFRTYNA 551

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD +LN+E R G   EK+ +YQHANKEVAIICNHQRSVSKSH+ QMS+L+EK+ +L+
Sbjct: 552  SITLDEMLNREARGGDAMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKMRELQ 611

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
               +EL TDL+RAK  KPPL+D DGKPKKN+ P+ +E KIAQ + KIEKME D + KEDL
Sbjct: 612  GVLDELKTDLARAKKGKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDL 671

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RISVAWCKR EVPIEKIFNKSLLAKF WAMDVDP+FRF
Sbjct: 672  KTVALGTSKINYLDPRISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFRF 724


>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  632 bits (1629), Expect = e-178
 Identities = 315/413 (76%), Positives = 346/413 (83%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLKKRI P+DITINIGK+ P+P+CPIPGERWKEV+HDNTVTWLAFWNDPI
Sbjct: 482  RGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVTWLAFWNDPI 541

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPKEFKYVFLAASSSLKGQSDKEKYEK+RLLKDYIQ+IRA YT+DF +KD  KRQI+VAT
Sbjct: 542  NPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQIAVAT 601

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKVENV LVPPNKL+FDFLGKDSIRY NTV
Sbjct: 602  YLIDKLALRAGNEKDDDEAD----TVGCCTLKVENVALVPPNKLEFDFLGKDSIRYFNTV 657

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE PVY AIG F+T K                  TSKLNAHLKELMPGLTAKVFRTYNA
Sbjct: 658  EVELPVYKAIGQFKTGKSGGDDLFDKLD-------TSKLNAHLKELMPGLTAKVFRTYNA 710

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD +LN+E R G   EK+ +YQHANKEVAIICNHQRSVSKSH+ QMS+L+EK+ +L+
Sbjct: 711  SITLDEMLNREARGGDAMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKMRELQ 770

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
               +EL TDL+RAK  KPPL+D DGKPKKN+ P+ +E KIAQ + KIEKME D + KEDL
Sbjct: 771  GVLDELKTDLARAKKGKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDL 830

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RISVAWCKR EVPIEKIFNKSLLAKF WAMDVDP+FRF
Sbjct: 831  KTVALGTSKINYLDPRISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFRF 883


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  627 bits (1616), Expect = e-177
 Identities = 319/415 (76%), Positives = 348/415 (83%), Gaps = 2/415 (0%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLKKRIRP DITINIGKD PIP+CP+PGERWKEV+HDNTVTWLAFWNDPI
Sbjct: 507  RGRGEHPKMGKLKKRIRPCDITINIGKDAPIPECPVPGERWKEVRHDNTVTWLAFWNDPI 566

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPKEFKYVFLAASS+LKG SDKEKYEK+RLLKDYIQ IRA YT+DF SKDPTK+QI+VAT
Sbjct: 567  NPKEFKYVFLAASSTLKGLSDKEKYEKARLLKDYIQGIRAAYTKDFASKDPTKKQIAVAT 626

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKVENVE VPPN LKFDFLGKDSIRY N V
Sbjct: 627  YLIDKLALRAGNEK----DDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEV 682

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE  V+ AI  FR+ K+ +               TSKLNAHLKELMPGLTAKVFRTYNA
Sbjct: 683  EVEAAVFKAIQQFRSGKEGSSD-------LFDLLDTSKLNAHLKELMPGLTAKVFRTYNA 735

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD +L++ET+ G V EKV VYQHANKEVAIICNHQR+VSKSH  QM +LNEKI +LK
Sbjct: 736  SITLDDMLSRETKGGDVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMLRLNEKIEELK 795

Query: 903  TQREELTTDLSRAKLRKPPLEDK--DGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKE 1076
               EEL +DLSR K  KPPL+ K  DGKPK+NL P+++E KIAQ +AKIEKME DK+ KE
Sbjct: 796  AVVEELKSDLSRVKKGKPPLKSKNADGKPKRNLNPESLEKKIAQTNAKIEKMERDKETKE 855

Query: 1077 DLKTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            DLKTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSLLAKFTWAMDVDP+FRF
Sbjct: 856  DLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPSFRF 910


>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
          Length = 927

 Score =  621 bits (1602), Expect = e-175
 Identities = 316/414 (76%), Positives = 348/414 (84%), Gaps = 1/414 (0%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLKKRIRP DITINIGKD PIP+CPIPGERWKEV++DNTVTWLAFW DPI
Sbjct: 525  RGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAFWIDPI 584

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDF-NSKDPTKRQISVA 359
            N KEFKYVFLAASS+LKGQSDKEKYEK+RLLKDYI  IRA YT+DF N+KDP K+QI+VA
Sbjct: 585  NQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVA 644

Query: 360  TYLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNT 539
            TYLIDKLALRAGNEK          TVGCCTLKVENVE VPPN LKFDFLGKDSIRY N 
Sbjct: 645  TYLIDKLALRAGNEKDDDEAD----TVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNE 700

Query: 540  VEVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYN 719
            V+VEP V+ AI  FR+ K+ +               TSKLNAHLKELMPGLTAKVFRTYN
Sbjct: 701  VQVEPAVFKAIQQFRSGKEGSEDLFDRLD-------TSKLNAHLKELMPGLTAKVFRTYN 753

Query: 720  ASITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDL 899
            ASITLD +L+KET+ G V EKV VYQHANKEVAIICNHQR+VSKSH  QMS+LNEKI++L
Sbjct: 754  ASITLDDMLSKETKGGEVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDEL 813

Query: 900  KTQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKED 1079
            KT  EEL TDLSR K  KPP +  DGKPK+NL P+A+E K+AQ++AKIEKME DK+ KED
Sbjct: 814  KTAMEELKTDLSRVKKGKPPSKGADGKPKRNLNPEALERKMAQINAKIEKMERDKETKED 873

Query: 1080 LKTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            LKTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSLLAKF W+MDVDP+FRF
Sbjct: 874  LKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 927


>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
            gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
            topoisomerase 1-like isoform X2 [Citrus sinensis]
            gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
            topoisomerase 1-like isoform X3 [Citrus sinensis]
            gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
            topoisomerase 1-like isoform X4 [Citrus sinensis]
          Length = 902

 Score =  619 bits (1597), Expect = e-175
 Identities = 316/414 (76%), Positives = 344/414 (83%), Gaps = 1/414 (0%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLKKRI+P+DITINIGKDVPIP+CPIPGE WKEVKHDNTVTWLAFWNDPI
Sbjct: 500  RGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPI 559

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPKEFKYVFLAASSSLKGQSDKEKYEK+R LKDYI  IRA YT+DF S+D T+RQI+VAT
Sbjct: 560  NPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVAT 619

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV NVE +PPNKLKFDFLGKDSI+Y+NTV
Sbjct: 620  YLIDKLALRAGNEK----DDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTV 675

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE PVY AIG F+T KK N               T+KLNAHLKELMPGLTAKVFRTYNA
Sbjct: 676  EVELPVYKAIGQFQTGKKQNDD-------LFDKLDTAKLNAHLKELMPGLTAKVFRTYNA 728

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD +LNK T DG V  K+ VYQ ANKEVAIICNHQR+VSK+H  QMS+L EKI DLK
Sbjct: 729  SITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 788

Query: 903  TQREELTTDLSRAKLRKPPL-EDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKED 1079
               ++L  DL RAK  KPPL +D DGK K+NLAP+A+E K+AQ +AKIEKME D + KED
Sbjct: 789  GVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKED 848

Query: 1080 LKTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            LKTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSLLAKF WAMDVDP FRF
Sbjct: 849  LKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 902


>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222847602|gb|EEE85149.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 877

 Score =  619 bits (1597), Expect = e-175
 Identities = 314/413 (76%), Positives = 341/413 (82%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK RIRP+DITINIGKD PIP+CPIPGERWKEVKHDNTVTWLAFWNDPI
Sbjct: 476  RGRGEHPKMGKLKSRIRPSDITINIGKDAPIPECPIPGERWKEVKHDNTVTWLAFWNDPI 535

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPKEFKYVFLAASSSLKGQSDKEKYEK+R LKDYI +IRA YT+DF SKD TKRQI+VAT
Sbjct: 536  NPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYTKDFASKDITKRQIAVAT 595

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV NVE +PPNKLKFDFLGKDSIRY NTV
Sbjct: 596  YLIDKLALRAGNEKDDDEAD----TVGCCTLKVANVECIPPNKLKFDFLGKDSIRYENTV 651

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE PVY AIG F+ AKK                 TSKLNAHLKELMPGLTAKVFRTYNA
Sbjct: 652  EVELPVYKAIGHFQVAKKQTDDLFDSLD-------TSKLNAHLKELMPGLTAKVFRTYNA 704

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD  L +ET DG V EK+ +Y  ANK+VAIICNHQR++SKSH+ QMS+L EKI +LK
Sbjct: 705  SITLDEKLYEETEDGDVAEKIVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKIEELK 764

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
            +  +EL TDL RAK  KPPL+  DGK K++L P+AIE KIA  + KIEKMEM  + KEDL
Sbjct: 765  STLKELKTDLDRAKKGKPPLKGADGKQKRSLTPEAIEKKIATTNQKIEKMEMAMKTKEDL 824

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPI+KIFNKSLLAKFTWAMDVDP FRF
Sbjct: 825  KTVALGTSKINYLDPRITVAWCKRHEVPIDKIFNKSLLAKFTWAMDVDPQFRF 877


>ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
            gi|567920950|ref|XP_006452481.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
            gi|557555705|gb|ESR65719.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
            gi|557555707|gb|ESR65721.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
          Length = 902

 Score =  618 bits (1594), Expect = e-174
 Identities = 315/414 (76%), Positives = 344/414 (83%), Gaps = 1/414 (0%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLKKRI+P+DITINIGKDVPIP+CPIPGE WKEVKHDNTVTWLAFWNDPI
Sbjct: 500  RGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNTVTWLAFWNDPI 559

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPKEFKYVFLAASSSLKGQSD+EKYEK+R LKDYI  IRA YT+DF S+D T+RQI+VAT
Sbjct: 560  NPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVAT 619

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV NVE +PPNKLKFDFLGKDSI+Y+NTV
Sbjct: 620  YLIDKLALRAGNEK----DDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTV 675

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE PVY AIG F+T KK N               T+KLNAHLKELMPGLTAKVFRTYNA
Sbjct: 676  EVELPVYKAIGQFQTGKKQNDD-------LFDKLDTAKLNAHLKELMPGLTAKVFRTYNA 728

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD +LNK T DG V  K+ VYQ ANKEVAIICNHQR+VSK+H  QMS+L EKI DLK
Sbjct: 729  SITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 788

Query: 903  TQREELTTDLSRAKLRKPPL-EDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKED 1079
               ++L  DL RAK  KPPL +D DGK K+NLAP+A+E K+AQ +AKIEKME D + KED
Sbjct: 789  GVLKDLRVDLDRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKED 848

Query: 1080 LKTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            LKTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSLLAKF WAMDVDP FRF
Sbjct: 849  LKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFRF 902


>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
          Length = 903

 Score =  618 bits (1593), Expect = e-174
 Identities = 311/413 (75%), Positives = 347/413 (84%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK+RI+P+DITINIG+D P+P+CPIPGERWKEVKHDNTVTWLAFWNDPI
Sbjct: 502  RGRGEHPKMGKLKRRIKPSDITINIGEDAPVPECPIPGERWKEVKHDNTVTWLAFWNDPI 561

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            + K+FKYVFLAASSSLKGQSDKEKYEKSR LK YIQDIR NYT+DF SKD  KRQI+VAT
Sbjct: 562  SQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGYIQDIRDNYTKDFRSKDVAKRQIAVAT 621

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV+NV  +PPNK++FDFLGKDSIRY NTV
Sbjct: 622  YLIDKLALRAGNEKDEDEAD----TVGCCTLKVDNVTCLPPNKIQFDFLGKDSIRYFNTV 677

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE  VY AI  FR  KK                 T++LNAHLK+LMPGLTAKVFRTYNA
Sbjct: 678  EVEELVYKAIEGFRAGKKPGKDLFDQLD-------TTRLNAHLKDLMPGLTAKVFRTYNA 730

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD IL+KET DG++ EK+AVYQ ANKEVAIICNHQRSVSKSHE+QM++LNE+I+DLK
Sbjct: 731  SITLDGILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMTRLNERIDDLK 790

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
             QR+EL  DLS+AK  KP   DK+GK K+NLAP AIE KIA ++ KIEKMEM+K+ KEDL
Sbjct: 791  AQRDELKVDLSKAKKGKPLGYDKEGKQKRNLAPDAIEKKIAAIETKIEKMEMEKKTKEDL 850

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSL+AKF WAMDVDP FRF
Sbjct: 851  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLVAKFGWAMDVDPEFRF 903


>ref|XP_002317355.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222860420|gb|EEE97967.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 860

 Score =  617 bits (1590), Expect = e-174
 Identities = 313/413 (75%), Positives = 337/413 (81%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK RIRP+DITINIGKD PIPKCPIPGERWKEVKHDNTVTWLAFWNDPI
Sbjct: 459  RGRGEHPKMGKLKSRIRPSDITINIGKDAPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 518

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPKEFKYVFLAASSSLKGQSDKEKYEK+R LKDYI +IR  YT+DF SKD TKRQI+VAT
Sbjct: 519  NPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRTAYTKDFASKDITKRQIAVAT 578

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV NVE +PPNKLKFDFLGKDSIRY NTV
Sbjct: 579  YLIDKLALRAGNEKDDDEAD----TVGCCTLKVANVECIPPNKLKFDFLGKDSIRYENTV 634

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE PVY AI  F+ AKK                 TSKLNAHLKELMPGLTAKVFRTYNA
Sbjct: 635  EVELPVYKAIRQFQVAKKPTDDLFDSLD-------TSKLNAHLKELMPGLTAKVFRTYNA 687

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD  L +ET DG V EK  +Y  ANK+VAIICNHQR++SKSH+ QMS+L EK+ +LK
Sbjct: 688  SITLDEKLYEETEDGDVAEKFVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKLEELK 747

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
               +E  TDL RAK  KPPL+D DGK K+NL P+AIE KIA  + KIEKME+  + KEDL
Sbjct: 748  GTLKEFKTDLDRAKKGKPPLKDADGKQKRNLTPEAIEKKIATTNQKIEKMELSMKTKEDL 807

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSLLAKFTWAMDVDP FRF
Sbjct: 808  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPQFRF 860


>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
          Length = 925

 Score =  616 bits (1588), Expect = e-174
 Identities = 314/414 (75%), Positives = 345/414 (83%), Gaps = 1/414 (0%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLKKRIRP DITINIGKD PIP+CPIPGERWKEV++ NTVTWLA+WNDPI
Sbjct: 523  RGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNGNTVTWLAYWNDPI 582

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDF-NSKDPTKRQISVA 359
            N KEFKYVFLAASS+LKGQSDKEKYEK+RLLKDYI  IRA YT+DF N+KDP K+QI+VA
Sbjct: 583  NQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVA 642

Query: 360  TYLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNT 539
            TYLIDKLALRAGNEK          TVGCCTLKVENVE VPPN LKFDFLGKDSIRY N 
Sbjct: 643  TYLIDKLALRAGNEKDDDEAD----TVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNE 698

Query: 540  VEVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYN 719
            V+VEP V+ AI  FR+ K+ +               TSKLNAHLKELMPGLTAKVFRTYN
Sbjct: 699  VQVEPAVFKAIQQFRSGKEGSEDLFDRLD-------TSKLNAHLKELMPGLTAKVFRTYN 751

Query: 720  ASITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDL 899
            ASITLD +L+KET+ G V E V VYQHANKEVAIICNHQR+VSKSH  QMS+LNEKI++L
Sbjct: 752  ASITLDDMLSKETKGGEVAENVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDEL 811

Query: 900  KTQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKED 1079
            KT  EEL TDLSRAK  KPP +  DGK K+NL P+A+E KI Q +AKIEKME DK+ KED
Sbjct: 812  KTALEELKTDLSRAKKGKPPTKGADGKAKRNLNPEALERKITQTNAKIEKMERDKETKED 871

Query: 1080 LKTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            LKTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSLLAKF W+MDVDP+FRF
Sbjct: 872  LKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 925


>gb|AFW61219.1| DNA topoisomerase I [Zea mays]
          Length = 602

 Score =  615 bits (1587), Expect = e-173
 Identities = 309/413 (74%), Positives = 347/413 (84%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK+RI P+DITINIGK  P+P+CPIPGE WKEVKHDNTVTWLAFWNDPI
Sbjct: 201  RGRGEHPKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPI 260

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPK+FKYVFLAASSSLKGQSDKEKYEKSR LK +IQ IR NYT+DF +KD T+RQI+VAT
Sbjct: 261  NPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVAT 320

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV+NV  +PPN+++FDFLGKDSIRY NTV
Sbjct: 321  YLIDKLALRAGNEKDDDEAD----TVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTV 376

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE  VY AI  FR  KK                 TS+LNAHLK+LMPGLTAKVFRTYNA
Sbjct: 377  EVEELVYKAIEGFRAGKKPGQDLFDKID-------TSRLNAHLKDLMPGLTAKVFRTYNA 429

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD IL++ET DG+V EK+AVYQ ANKEVAIICNHQRSVSKSHE+QM+++NEKI++LK
Sbjct: 430  SITLDGILHEETEDGTVLEKIAVYQRANKEVAIICNHQRSVSKSHESQMTRMNEKIDELK 489

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
            +Q EEL  DL++AK  KP   D +GKPK+NLAP+AI+ K+A L+ KIEKMEMDK+IKEDL
Sbjct: 490  SQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDL 549

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSLLAKF WAMDVDP FRF
Sbjct: 550  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFVWAMDVDPEFRF 602


>gb|ACL52396.1| unknown [Zea mays]
          Length = 574

 Score =  615 bits (1587), Expect = e-173
 Identities = 309/413 (74%), Positives = 347/413 (84%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK+RI P+DITINIGK  P+P+CPIPGE WKEVKHDNTVTWLAFWNDPI
Sbjct: 173  RGRGEHPKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPI 232

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPK+FKYVFLAASSSLKGQSDKEKYEKSR LK +IQ IR NYT+DF +KD T+RQI+VAT
Sbjct: 233  NPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVAT 292

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV+NV  +PPN+++FDFLGKDSIRY NTV
Sbjct: 293  YLIDKLALRAGNEKDDDEAD----TVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTV 348

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE  VY AI  FR  KK                 TS+LNAHLK+LMPGLTAKVFRTYNA
Sbjct: 349  EVEELVYKAIEGFRAGKKPGQDLFDKID-------TSRLNAHLKDLMPGLTAKVFRTYNA 401

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD IL++ET DG+V EK+AVYQ ANKEVAIICNHQRSVSKSHE+QM+++NEKI++LK
Sbjct: 402  SITLDGILHEETEDGTVLEKIAVYQRANKEVAIICNHQRSVSKSHESQMTRMNEKIDELK 461

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
            +Q EEL  DL++AK  KP   D +GKPK+NLAP+AI+ K+A L+ KIEKMEMDK+IKEDL
Sbjct: 462  SQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDL 521

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSLLAKF WAMDVDP FRF
Sbjct: 522  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFVWAMDVDPEFRF 574


>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
          Length = 911

 Score =  614 bits (1583), Expect = e-173
 Identities = 308/413 (74%), Positives = 347/413 (84%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK+RI+P+DITINIGK  PIP+CPIPGE WKEVKHDNTVTWLAFWNDPI
Sbjct: 510  RGRGEHPKMGKLKRRIQPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPI 569

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            + K+FKYVFLAASS+LKGQSDKEKYEKSR LK +I  IR  YT+DF SKD TK+QI+VAT
Sbjct: 570  SQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHIHKIRDTYTKDFRSKDKTKKQIAVAT 629

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV+NV  VPPN L+FDFLGKDSIRY NTV
Sbjct: 630  YLIDKLALRAGNEKDDDEAE----TVGCCTLKVDNVTCVPPNNLQFDFLGKDSIRYFNTV 685

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE PVY AI +FR  KK                 T++LNAHLK+LMPGLTAKVFRTYNA
Sbjct: 686  EVELPVYKAIEEFRAGKKPGDDLFDKLD-------TTRLNAHLKDLMPGLTAKVFRTYNA 738

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD IL+KET DG++ EK+AVYQ ANKEVAIICNHQRSVSKSH++QM++LNEKI++LK
Sbjct: 739  SITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELK 798

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
             QR+EL  DLS+ K  K    DKDGKPK+NLAP+A E KI+Q++ KIEKMEMDK+IKEDL
Sbjct: 799  AQRDELKADLSKVKKGKSLGYDKDGKPKRNLAPEAFEKKISQVETKIEKMEMDKKIKEDL 858

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSL+AKF+WAMDVDP+FRF
Sbjct: 859  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 911


>ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|ACS44671.1| DNA
            topoisomerase I [Zea mays]
          Length = 904

 Score =  612 bits (1579), Expect = e-172
 Identities = 308/413 (74%), Positives = 346/413 (83%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK+RI P+DITINIGK  P+P+CPIPGE WKEVKHDNTVTWLAFWNDPI
Sbjct: 503  RGRGEHPKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPI 562

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            NPK+FKYVFLAASSSLKGQSDKEKYEKSR LK +IQ IR NYT+DF +KD T+RQI+VAT
Sbjct: 563  NPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVAT 622

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV+NV  +PPN+++FDFLGKDSIRY NTV
Sbjct: 623  YLIDKLALRAGNEKDDDEAD----TVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTV 678

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE  VY AI  FR  KK                 TS+LNAHLK+LMPGLTAKVFRTYNA
Sbjct: 679  EVEELVYKAIEGFRAGKKPGQDLFDKID-------TSRLNAHLKDLMPGLTAKVFRTYNA 731

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD IL++ET DG+V EK+AVYQ ANKEVAIICN QRSVSKSHE+QM+++NEKI++LK
Sbjct: 732  SITLDGILHEETEDGTVLEKIAVYQRANKEVAIICNQQRSVSKSHESQMTRMNEKIDELK 791

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
            +Q EEL  DL++AK  KP   D +GKPK+NLAP+AI+ K+A L+ KIEKMEMDK+IKEDL
Sbjct: 792  SQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDL 851

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSLLAKF WAMDVDP FRF
Sbjct: 852  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFVWAMDVDPEFRF 904


>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
            gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
            [Oryza sativa Japonica Group]
            gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
            Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
            protein OsJ_26075 [Oryza sativa Japonica Group]
          Length = 916

 Score =  611 bits (1576), Expect = e-172
 Identities = 306/413 (74%), Positives = 347/413 (84%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK+RI+P+DITINIGK  PIP+CPIPGE WKEVKHDNTVTWLAFWNDPI
Sbjct: 515  RGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPI 574

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            + K+FKYVFLAASS+LKGQSDKEKYEKSR LK ++  IR  YT+DF SKD TK+QI+VAT
Sbjct: 575  SQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVAT 634

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV+NV  VPPNKL+FDFLGKDSIRY NTV
Sbjct: 635  YLIDKLALRAGNEKDEDEAE----TVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTV 690

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE  VY AI +FR  KK                 T++LNAHLK+LMPGLTAKVFRTYNA
Sbjct: 691  EVELLVYKAIEEFRAGKKPGQDLFDKLD-------TTRLNAHLKDLMPGLTAKVFRTYNA 743

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD IL+KET DG++ EK+AVYQ ANKEVAIICNHQRSVSKSH++QM++LNEKI++LK
Sbjct: 744  SITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELK 803

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
             QR+EL  DLS+ +  K    DKDGKPK+NLAP+A E KI+Q++ KIEKMEMDK+IKEDL
Sbjct: 804  AQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDL 863

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSL+AKF+WAMDVDP+FRF
Sbjct: 864  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 916


>gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
          Length = 916

 Score =  611 bits (1576), Expect = e-172
 Identities = 306/413 (74%), Positives = 347/413 (84%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK+RI+P+DITINIGK  PIP+CPIPGE WKEVKHDNTVTWLAFWNDPI
Sbjct: 515  RGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPI 574

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            + K+FKYVFLAASS+LKGQSDKEKYEKSR LK ++  IR  YT+DF SKD TK+QI+VAT
Sbjct: 575  SQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVAT 634

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV+NV  VPPNKL+FDFLGKDSIRY NTV
Sbjct: 635  YLIDKLALRAGNEKDEDEAE----TVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTV 690

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE  VY AI +FR  KK                 T++LNAHLK+LMPGLTAKVFRTYNA
Sbjct: 691  EVELLVYKAIEEFRAGKKPGQDLFDKLD-------TTRLNAHLKDLMPGLTAKVFRTYNA 743

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD IL+KET DG++ EK+AVYQ ANKEVAIICNHQRSVSKSH++QM++LNEKI++LK
Sbjct: 744  SITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELK 803

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
             QR+EL  DLS+ +  K    DKDGKPK+NLAP+A E KI+Q++ KIEKMEMDK+IKEDL
Sbjct: 804  AQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDL 863

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSL+AKF+WAMDVDP+FRF
Sbjct: 864  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 916


>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score =  611 bits (1575), Expect = e-172
 Identities = 308/413 (74%), Positives = 343/413 (83%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLKK IRP+DITINIGKD PIP+CPIPGE WKE++HDNTVTWLAFWNDPI
Sbjct: 493  RGRGEHPKMGKLKKCIRPSDITINIGKDAPIPECPIPGESWKEIRHDNTVTWLAFWNDPI 552

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
             P+EFKYVFLAASSSLKGQSDKEKYEK+RLLKD+IQ IRA YT+DF SKD TKRQI+VAT
Sbjct: 553  KPREFKYVFLAASSSLKGQSDKEKYEKARLLKDFIQGIRAAYTKDFASKDITKRQIAVAT 612

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKVENVE  PP+ LKFDFLGKDSIRY N V
Sbjct: 613  YLIDKLALRAGNEKDDDEAD----TVGCCTLKVENVEPKPPSILKFDFLGKDSIRYQNEV 668

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE PVY AI  FRT K+                 TSKLNAHLK LMPGLTAKVFRTYNA
Sbjct: 669  EVELPVYKAIQQFRTGKRGGDDLFDKLD-------TSKLNAHLKGLMPGLTAKVFRTYNA 721

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD +L++ET+ G+V EK+ VYQHANKEVAIICNHQR+VSKSH  QM++LN KI++LK
Sbjct: 722  SITLDEMLSRETKGGNVAEKIVVYQHANKEVAIICNHQRTVSKSHPAQMTRLNGKIDELK 781

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
               + L TDL+RAK  KPPLED DGKPK+NL P+A+E KI Q +AKIEKME DK+ KE L
Sbjct: 782  GILDGLQTDLARAKKGKPPLEDADGKPKRNLTPEALERKIGQTNAKIEKMERDKETKEGL 841

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KT+ALGTSKI+YLD RI+VAWCKRHEVPIEK+FNKSLLAKF W+MDVDP+FRF
Sbjct: 842  KTIALGTSKISYLDPRITVAWCKRHEVPIEKVFNKSLLAKFAWSMDVDPSFRF 894


>dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
          Length = 926

 Score =  610 bits (1573), Expect = e-172
 Identities = 311/414 (75%), Positives = 344/414 (83%), Gaps = 1/414 (0%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLKKRIRP DITINIGKD PIP+CPIPGERWKEV++DNTVTWLAFWNDPI
Sbjct: 524  RGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAFWNDPI 583

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDF-NSKDPTKRQISVA 359
            N KE KYVFLAASS+LKGQSDKEKYEK+RLLKDYI  IRA YT+DF N+KDP K+QI+VA
Sbjct: 584  NQKECKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVA 643

Query: 360  TYLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNT 539
            TYLIDKLALRAGNEK          TVGCCTLKVENVE VPPN LK DF+GKDSIRY N 
Sbjct: 644  TYLIDKLALRAGNEKDDDEAD----TVGCCTLKVENVEPVPPNILKIDFIGKDSIRYQNE 699

Query: 540  VEVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYN 719
            V+VEP V+ AI  FR+ K+                 TSKLNAHLKELMPGLTAKVFRTYN
Sbjct: 700  VQVEPAVFKAIQQFRSGKEGCADLFDRLD-------TSKLNAHLKELMPGLTAKVFRTYN 752

Query: 720  ASITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDL 899
            ASITLD +L+KET+ G V EKV VYQHANKEVAIICNHQR+VSKSH  QMS+LNEKI++L
Sbjct: 753  ASITLDDMLSKETKGGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDEL 812

Query: 900  KTQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKED 1079
            KT  EEL TDLSRAK  KPP +  DG+PK+NL P+++E KIAQ +AKIEKME DK+ KED
Sbjct: 813  KTALEELKTDLSRAKKGKPPAKGADGEPKRNLNPESLERKIAQTNAKIEKMERDKKTKED 872

Query: 1080 LKTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            LK VAL TSKI+YLD RI+VAWCKRHEVPIEKIFNKSLLAKF W+MDVDP+FRF
Sbjct: 873  LKAVALSTSKISYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 926


>ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
            gi|241940222|gb|EES13367.1| hypothetical protein
            SORBIDRAFT_07g003610 [Sorghum bicolor]
          Length = 921

 Score =  610 bits (1572), Expect = e-172
 Identities = 307/413 (74%), Positives = 347/413 (84%)
 Frame = +3

Query: 3    RGRGEHPKMGKLKKRIRPTDITINIGKDVPIPKCPIPGERWKEVKHDNTVTWLAFWNDPI 182
            RGRGEHPKMGKLK+RI+P+DITINIGK  P+P+CPIPGE WKE+KHDNTVTWLAFWNDPI
Sbjct: 520  RGRGEHPKMGKLKRRIQPSDITINIGKGAPVPECPIPGESWKEIKHDNTVTWLAFWNDPI 579

Query: 183  NPKEFKYVFLAASSSLKGQSDKEKYEKSRLLKDYIQDIRANYTRDFNSKDPTKRQISVAT 362
            + K+FKYVFLAASSSLKGQSDKEKYEKSR LK +IQ IR NYT+DF +KD T+RQI+VAT
Sbjct: 580  SQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVAT 639

Query: 363  YLIDKLALRAGNEKXXXXXXXXXXTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 542
            YLIDKLALRAGNEK          TVGCCTLKV+NV  +PPNK++FDFLGKDSIRY NTV
Sbjct: 640  YLIDKLALRAGNEKDDDEAD----TVGCCTLKVDNVTCMPPNKIQFDFLGKDSIRYFNTV 695

Query: 543  EVEPPVYTAIGDFRTAKKSNGSXXXXXXXXXXXXXTSKLNAHLKELMPGLTAKVFRTYNA 722
            EVE  VY AI  FR  KK                 T++LNAHLK+LMPGLTAKVFRTYNA
Sbjct: 696  EVEELVYKAIEGFRAGKKPGEGLFDKID-------TTRLNAHLKDLMPGLTAKVFRTYNA 748

Query: 723  SITLDVILNKETRDGSVPEKVAVYQHANKEVAIICNHQRSVSKSHETQMSKLNEKINDLK 902
            SITLD IL++ET DG++ EK+AVYQ ANKEVAIICNHQRSVSKSHE+QM KLNEKI++LK
Sbjct: 749  SITLDGILHEETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMIKLNEKIDELK 808

Query: 903  TQREELTTDLSRAKLRKPPLEDKDGKPKKNLAPQAIENKIAQLDAKIEKMEMDKQIKEDL 1082
            +Q EEL  DLS+AK  KP   DK+GK K+NLAP+AIE KIA ++ KI+KMEMDK+IKEDL
Sbjct: 809  SQMEELKADLSKAKKGKPLGYDKEGKQKRNLAPEAIEKKIAMVEGKIDKMEMDKKIKEDL 868

Query: 1083 KTVALGTSKINYLDLRISVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPNFRF 1241
            KTVALGTSKINYLD RI+VAWCKRHEVPIEKIFNKSL+AKF WAMDVDP+FRF
Sbjct: 869  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFGWAMDVDPDFRF 921