BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00014647
         (1732 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMJ01257.1| hypothetical protein PRUPE_ppa023106mg [Prunus pe...   340   9e-91
ref|XP_004961485.1| PREDICTED: homeobox protein HOX1A-like [Seta...   339   2e-90
ref|XP_004289744.1| PREDICTED: uncharacterized protein LOC101296...   338   4e-90
gb|AFW78862.1| putative homeodomain-like transcription factor su...   334   6e-89
ref|XP_003566033.1| PREDICTED: homeobox protein HOX1A-like [Brac...   334   8e-89
ref|NP_001105918.1| HOX1B protein [Zea mays] gi|1648931|emb|CAA6...   334   8e-89
ref|NP_001105447.1| homeobox protein HOX1A [Zea mays] gi|1170434...   333   1e-88
emb|CAB51951.1| homeodomain transcription factor [Zea mays]           333   1e-88
dbj|BAJ99831.1| predicted protein [Hordeum vulgare subsp. vulgare]    330   9e-88
gb|AFW78854.1| putative homeodomain-like transcription factor su...   329   2e-87
gb|EOX98399.1| Homeodomain-like protein with RING/FYVE/PHD-type ...   326   2e-86
dbj|BAC15622.1| PHD-finger family homeodomain protein [Oryza sat...   326   2e-86
ref|NP_001057214.1| Os06g0229300 [Oryza sativa Japonica Group] g...   326   2e-86
gb|EEC80271.1| hypothetical protein OsI_22252 [Oryza sativa Indi...   326   2e-86
ref|XP_006643655.1| PREDICTED: homeobox protein HOX1A-like isofo...   324   6e-86
ref|XP_006643653.1| PREDICTED: homeobox protein HOX1A-like isofo...   324   6e-86
emb|CBI22504.3| unnamed protein product [Vitis vinifera]              322   4e-85
ref|XP_002269077.1| PREDICTED: homeobox protein HAT3.1-like [Vit...   322   4e-85
ref|XP_003569804.1| PREDICTED: homeobox protein HOX1A-like [Brac...   320   2e-84
gb|EAZ42623.1| hypothetical protein OsJ_27188 [Oryza sativa Japo...   317   1e-83

>gb|EMJ01257.1| hypothetical protein PRUPE_ppa023106mg [Prunus persica]
          Length = 1058

 Score =  340 bits (873), Expect = 9e-91
 Identities = 199/466 (42%), Positives = 265/466 (56%), Gaps = 27/466 (5%)
 Frame = -2

Query: 1326 APSNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCK 1147
            A ++EFS+ R H+ YLL +I +E+SLIDAY  EGWKG SLEK++PEKEL+RA SEIL+ K
Sbjct: 410  AIADEFSRIRTHLRYLLNRIGYEKSLIDAYSGEGWKGSSLEKLKPEKELQRATSEILRRK 469

Query: 1146 LRIRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDR 967
            L+IRD FQ+L+SL + G   E+LFD  G+IDSED+FC KCGSKD+S DNDIILCDG CDR
Sbjct: 470  LKIRDLFQRLESLCAEGMFPESLFDSEGQIDSEDIFCGKCGSKDVSLDNDIILCDGACDR 529

Query: 966  AFHQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEAT 787
             FHQ CL PPL + +IPP+D+GWLCP CDCKVDC+DL NDSQGTD S+ D+WEK+FPEA 
Sbjct: 530  GFHQFCLEPPLLSEDIPPDDEGWLCPGCDCKVDCIDLLNDSQGTDLSVTDSWEKVFPEAA 589

Query: 786  AVANGNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLGQPVQN 607
            A A+     D+   PS+DS+D DY PD  E +                     L  P  N
Sbjct: 590  AAASAGENQDNHGLPSDDSDDNDYDPDGPETDNKVQGEESSSDESEYASASDGLETPKSN 649

Query: 606  KIDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLNESDFMSDSDDFCADLCKTVNAN----- 442
               YLGL                       + + SDF SDS+D  A L   + ++     
Sbjct: 650  DEQYLGLPSEDSEDDDYNPYAPDVNEDVKQESSSSDFTSDSEDLGAALDDNIMSSEDVEG 709

Query: 441  AVSSNLCDSEPLDGSGQ---LRATMQFPLNAE-NPLVEVDAGQGTNYPTSKKRQRESSDF 274
              S++L DS+P  GSG+   +    +  L  E   L+E   GQG + P S KR  E  D+
Sbjct: 710  PKSTSLDDSKPHRGSGEQSSISGQKKHSLKDELISLLESGPGQGESAPLSGKRHIERLDY 769

Query: 273  KKLHDEVDADESSKPSQNE--SEKSTVKKIKKNVSREEPSKLPDENAQSSSNQRGSRVKH 100
            K+LHDE   +  +  S +E  ++ +T +K KK    +  ++ P  N ++S+ + G   K 
Sbjct: 770  KRLHDEAYGNVPTDSSDDEDWNDIATQRKRKKGTG-QVANRSP--NGKTSNIKNGVITKD 826

Query: 99   IV---------------KKGNTQDISKLDQQQPSKAIYE-STSDRA 10
            I                +K N +D S L  + P  +    STS RA
Sbjct: 827  IKPDVDENENTPRRMPHRKSNVEDTSNLSNKSPKGSTKSGSTSGRA 872


>ref|XP_004961485.1| PREDICTED: homeobox protein HOX1A-like [Setaria italica]
          Length = 741

 Score =  339 bits (870), Expect = 2e-90
 Identities = 186/426 (43%), Positives = 254/426 (59%), Gaps = 19/426 (4%)
 Frame = -2

Query: 1320 SNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKLR 1141
            ++EFSQ RK + Y+L ++N+EQSLI+AY +EGWK  SL+KIRPEKELERAK+EIL+CKLR
Sbjct: 123  TDEFSQIRKRVRYILNRMNYEQSLIEAYASEGWKNQSLDKIRPEKELERAKAEILRCKLR 182

Query: 1140 IRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRAF 961
            IR+ FQ LDSLLS G+++E+LFD  GEI  ED+FCA CGSKD++  NDIILCDG CDR F
Sbjct: 183  IREVFQNLDSLLSKGKIDESLFDSEGEISCEDIFCANCGSKDVTLGNDIILCDGACDRGF 242

Query: 960  HQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATAV 781
            HQ CL+PPL T +IP  D+GWLCPACDCK+DC+D+ ND QG+D SI+D+WEK+FPEA  +
Sbjct: 243  HQNCLNPPLRTEDIPEGDEGWLCPACDCKIDCIDVINDLQGSDLSIDDSWEKVFPEAATM 302

Query: 780  ANGNNQFDDSIYPSEDSEDYDYQP----DHV----EGNAXXXXXXXXXXXXXXXXXXXDL 625
            ANG+NQ D    PS+DS+D D++P    +HV    EG++                     
Sbjct: 303  ANGSNQDDAFDLPSDDSDDNDFEPNMPEEHVASKEEGSSEEEEDEDGGSDSDDSNFLTSS 362

Query: 624  ----GQPV--QNKIDYLGL---XXXXXXXXXXXXXXXXXXXXXXXDLNESDFMSDSDDFC 472
                 +P+  + K+D LGL                          + +ESDF SDSDDFC
Sbjct: 363  DSDDSEPLTAKKKVDDLGLPSEDSEDDDYDPAGPDSDKDIQKKESNSDESDFTSDSDDFC 422

Query: 471  ADLCKTVNANAVSSNLCDSEPLDGSGQLRATMQFPLNAENPLVEVDAGQGTNYPTSKKRQ 292
             ++ KT   + VSS       +D   +  +      + ++P+ E +  Q    P S +RQ
Sbjct: 423  EEIAKTGGHDEVSSPPLPDGKVDDMEKSTSQANTANSNDDPM-ETEMDQSVVLPVSGRRQ 481

Query: 291  RESSDFKKLHDEVDADESSKPSQNE--SEKSTVKKIKKNVSREEPSKLPDENAQSSSNQR 118
             E  D+KKL+DE   +  S  S +E  S KST +K  +    + P         +  + R
Sbjct: 482  TERLDYKKLYDEAYGEAPSNSSDDEEWSGKSTPRKGHEESEADSP---------AGKSSR 532

Query: 117  GSRVKH 100
             +R+ H
Sbjct: 533  STRIVH 538


>ref|XP_004289744.1| PREDICTED: uncharacterized protein LOC101296723 [Fragaria vesca
            subsp. vesca]
          Length = 1227

 Score =  338 bits (867), Expect = 4e-90
 Identities = 186/418 (44%), Positives = 240/418 (57%), Gaps = 10/418 (2%)
 Frame = -2

Query: 1320 SNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKLR 1141
            ++EFS+ R H+ Y L +IN+E+SLIDAY +EGWKG SLEK++PEKEL+RA SEIL+ K +
Sbjct: 604  ADEFSRIRSHLRYFLNRINYEKSLIDAYSSEGWKGNSLEKLKPEKELQRATSEILRRKSK 663

Query: 1140 IRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRAF 961
            IRD FQ+LDSL + G   E+LFD+ G+IDSED+FCAKCGS D+ ADNDIILCDG CDR F
Sbjct: 664  IRDLFQRLDSLCAEGMFPESLFDEEGQIDSEDIFCAKCGSLDVYADNDIILCDGACDRGF 723

Query: 960  HQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATAV 781
            HQ CL PPL + EIPP+D+GWLCP CDCKVDC+DL NDSQGTD SI D+WEK+FPEA   
Sbjct: 724  HQHCLEPPLLSEEIPPDDEGWLCPGCDCKVDCIDLLNDSQGTDLSITDSWEKVFPEAAVA 783

Query: 780  AN-GNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLGQPVQNK 604
            A+ G +Q ++   PSEDS+D DY PD  E +                     L  P  N 
Sbjct: 784  ASAGQHQENNQGLPSEDSDDDDYDPDGPETDEEVQEGESSSDESEYASASDGLETPKTND 843

Query: 603  IDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLNESDFMSDSDDFCA----DLCKTVNANAV 436
              YLG+                         + SDF SDS+D  A    D     N    
Sbjct: 844  EQYLGIPSDDSEDDDFNPDAPDPTEDVKQGSSSSDFTSDSEDLAAVLDEDRKSFENGEGP 903

Query: 435  SSNLCDSEPL----DGSGQLRATMQFPLNAE-NPLVEVDAGQGTNYPTSKKRQRESSDFK 271
             S++ ++  L     G G  R   +  +  E + L+E D GQ  + P S KR  E  D+K
Sbjct: 904  QSSVLEASTLLRGSGGKGSKRGQKRHFIKDELSSLIESDPGQDGSTPVSGKRHVERLDYK 963

Query: 270  KLHDEVDADESSKPSQNESEKSTVKKIKKNVSREEPSKLPDENAQSSSNQRGSRVKHI 97
            KLHDE   D  +   +   E +  +K KK   +  P  L     + S+ ++G   K I
Sbjct: 964  KLHDEEYGDIPTSDDEEYIETAVPRKRKKGAGQVSPGSL---KGKPSTIKKGKTTKDI 1018


>gb|AFW78862.1| putative homeodomain-like transcription factor superfamily protein
            [Zea mays]
          Length = 692

 Score =  334 bits (857), Expect = 6e-89
 Identities = 187/421 (44%), Positives = 247/421 (58%), Gaps = 14/421 (3%)
 Frame = -2

Query: 1320 SNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKLR 1141
            ++EFSQ RK + Y+L ++N+EQSLI+AY +EGWK  SL+KIRPEKELERAKSEIL+CKLR
Sbjct: 118  TDEFSQIRKRVRYILNRMNYEQSLIEAYASEGWKNQSLDKIRPEKELERAKSEILRCKLR 177

Query: 1140 IRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRAF 961
            IR+ FQ +DSLLS G+++E+LFD  GEI  ED+FCA CGSK+ +  NDIILCDG CDR F
Sbjct: 178  IREVFQNIDSLLSKGKIDESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGF 237

Query: 960  HQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATAV 781
            HQ CL+PPL T +IP  D+GWLCPACDCK+DC+DL N+ QG+D SIED WEK+FPEA A+
Sbjct: 238  HQNCLNPPLRTEDIPMGDEGWLCPACDCKLDCIDLINELQGSDISIEDPWEKVFPEAAAM 297

Query: 780  ANGNNQFDDSIYPSEDSEDYDYQP----DHV----EGNAXXXXXXXXXXXXXXXXXXXDL 625
            AN + Q +    PS+DS+D D+ P    +HV    EG++                     
Sbjct: 298  ANSSKQDEAFDLPSDDSDDNDFDPNMPEEHVASKEEGSSEEEEDDDGGSDSDDSDFLTCS 357

Query: 624  G--QPVQNK--IDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLN--ESDFMSDSDDFCADL 463
               +P+ +K  +D LGL                         N  ESDFMSDSDDFC ++
Sbjct: 358  DDLEPLIDKKNVDDLGLPSEDSEDDDYDPAGPDSDKDVEKKSNSDESDFMSDSDDFCKEI 417

Query: 462  CKTVNANAVSSNLCDSEPLDGSGQLRATMQFPLNAENPLVEVDAGQGTNYPTSKKRQRES 283
             K+   + VSS       +    +  A      +A++P+ E +  Q    P S++RQ E 
Sbjct: 418  KKSGGHDEVSSPPLPDVKVGDMEKNTAQSNTTSSADDPM-ETEIDQSVVLPVSRRRQAER 476

Query: 282  SDFKKLHDEVDADESSKPSQNESEKSTVKKIKKNVSREEPSKLPDENAQSSSNQRGSRVK 103
             D+K+L+DE   + SS  S  E        IK N          +E    S   +GSRV 
Sbjct: 477  LDYKRLYDEAYGEASSDSSDEEEWSGKNTPIKSN----------EEGEVGSPAGKGSRVA 526

Query: 102  H 100
            H
Sbjct: 527  H 527


>ref|XP_003566033.1| PREDICTED: homeobox protein HOX1A-like [Brachypodium distachyon]
          Length = 963

 Score =  334 bits (856), Expect = 8e-89
 Identities = 194/481 (40%), Positives = 272/481 (56%), Gaps = 13/481 (2%)
 Frame = -2

Query: 1404 KISSEPSNSAVSPVTXXXXXXXXXKSAPSNEFSQRRKHISYLLRKINFEQSLIDAYVNEG 1225
            K  S+  ++ V P           K  P+NEFS+ R+ + Y+L ++N+EQSL++AY NEG
Sbjct: 108  KFPSDSVHTLVQPAAKRIKRGRPTKKGPNNEFSKIRQRVRYILNRMNYEQSLLEAYANEG 167

Query: 1224 WKGLSLEKIRPEKELERAKSEILQCKLRIRDAFQQLDSLLSIGRLEENLFDDNGEIDSED 1045
            WK  SLEKIRPEKELERAK EI++CKLRIR+AFQ LDSLLS+G+L+E+LFD+ G+I  ED
Sbjct: 168  WKRQSLEKIRPEKELERAKEEIVRCKLRIREAFQNLDSLLSMGKLDESLFDNEGKISCED 227

Query: 1044 MFCAKCGSKDISADNDIILCDGICDRAFHQKCLSPPLATNEIPPEDQGWLCPACDCKVDC 865
            + CA C S+ ++ +NDIILCDG+CDR FHQKCL+PPL T +IP  D+GWLCPACDCK+DC
Sbjct: 228  IICATCSSQYVTLNNDIILCDGVCDRGFHQKCLNPPLLTKDIPAGDEGWLCPACDCKIDC 287

Query: 864  LDLFNDSQGTDFSIEDTWEKIFPEATAVANGNNQFDDSIYPSEDSEDYDYQPD------- 706
            +D+ N+ QGT+ SI D+WEK+FPE  A+A+G    D    PSEDSED D+ P+       
Sbjct: 288  IDVINELQGTNLSISDSWEKVFPETAALAHGTIPKDAFDLPSEDSEDSDFDPNIAEEHVT 347

Query: 705  -HVEGNAXXXXXXXXXXXXXXXXXXXDLGQPVQNK--IDYLGLXXXXXXXXXXXXXXXXX 535
             H EG++                   D  + ++ K  +D LGL                 
Sbjct: 348  GHEEGSSEEDEDEGSDSDDSNFVTTCDNSEHLKEKEKVDDLGLPSEDSEDDDYDPAGPDS 407

Query: 534  XXXXXXDLNESDFMSDSDDFCADLCKTVNANAVSSNLCDSEPL-DGSGQLRATMQFPLNA 358
                    +ESDF SDSDDFCA++ K+   + VSS     +P  D  G    +     N 
Sbjct: 408  DKDIKEKQDESDFTSDSDDFCAEIAKSCGRDEVSSGAKVGDPTNDLEGATACSNTAIPNL 467

Query: 357  ENPLVEVDAGQGTNYPTSKKRQRESSDFKKLHDEVDADESSKPSQNE--SEKSTVKKIKK 184
             +  +E+D  Q    P   +RQ +  D+KKL+D+   +  S  S  E  S KST +K   
Sbjct: 468  TSNDLEID--QDEVLPVLGRRQGQRLDYKKLYDDAYGEAPSDSSDGEEWSGKSTSEK--- 522

Query: 183  NVSREEPSKLPDENAQSSSNQRGSRVKHIVKKGNTQDISKLDQQQPSKAIYESTSDRAQE 4
                EE +++     +SS   RG+   H+   G       ++ Q P K   + ++++   
Sbjct: 523  --GDEERNEVDSFLRKSS---RGTGTVHLDPDG------LVNGQHPGKLTSDVSNNKTNR 571

Query: 3    K 1
            K
Sbjct: 572  K 572


>ref|NP_001105918.1| HOX1B protein [Zea mays] gi|1648931|emb|CAA63156.1| HOX1B protein
            [Zea mays]
          Length = 692

 Score =  334 bits (856), Expect = 8e-89
 Identities = 186/421 (44%), Positives = 246/421 (58%), Gaps = 14/421 (3%)
 Frame = -2

Query: 1320 SNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKLR 1141
            ++EFSQ RK + Y+L ++N+EQSLI+AY +EGWK  SL+KIRPEKELERAKSEIL+CKLR
Sbjct: 118  TDEFSQIRKRVRYILNRMNYEQSLIEAYASEGWKNQSLDKIRPEKELERAKSEILRCKLR 177

Query: 1140 IRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRAF 961
            IR+ FQ +DSLLS G+++E+LFD  GEI  ED+FCA CGSK+ +  NDIILCDG CDR F
Sbjct: 178  IREVFQNIDSLLSKGKIDESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGF 237

Query: 960  HQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATAV 781
            HQ CL+PPL T +IP  D+GWLCPACDCK+DC+DL N+ QG+D SIED WEK+FPEA A+
Sbjct: 238  HQNCLNPPLRTEDIPMGDEGWLCPACDCKLDCIDLINELQGSDISIEDPWEKVFPEAAAM 297

Query: 780  ANGNNQFDDSIYPSEDSEDYDYQP----DHV----EGNAXXXXXXXXXXXXXXXXXXXDL 625
             NG+ Q +    PS+DS+D D+ P    +HV    EG++                     
Sbjct: 298  TNGSKQDERFDLPSDDSDDNDFDPNMPEEHVASKEEGSSEEEEDDDGGSDSDDSDFLTCS 357

Query: 624  G--QPV--QNKIDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLN--ESDFMSDSDDFCADL 463
               +P+  + K+D LGL                         N  ESDF SDSDDFC ++
Sbjct: 358  DDLEPLIDKKKVDDLGLSSEDSEDDDYDPAGPDSDKDVEKKSNSDESDFTSDSDDFCKEI 417

Query: 462  CKTVNANAVSSNLCDSEPLDGSGQLRATMQFPLNAENPLVEVDAGQGTNYPTSKKRQRES 283
             K+   + VSS       +    +  A      +A++P+ E +  Q    P S++RQ E 
Sbjct: 418  KKSGGHDEVSSPPLPDVKVGDMEKNTAQSNTTSSADDPM-ETEIDQSVVLPVSRRRQAER 476

Query: 282  SDFKKLHDEVDADESSKPSQNESEKSTVKKIKKNVSREEPSKLPDENAQSSSNQRGSRVK 103
             D+K+L+DE   + SS  S  E        IK N          +E    S   +GSRV 
Sbjct: 477  LDYKRLYDEAYGEASSDSSDEEEWSGKNTPIKSN----------EEGEVGSPAGKGSRVA 526

Query: 102  H 100
            H
Sbjct: 527  H 527


>ref|NP_001105447.1| homeobox protein HOX1A [Zea mays] gi|1170434|sp|P46605.1|HOX1A_MAIZE
            RecName: Full=Homeobox protein HOX1A
            gi|22331|emb|CAA47859.1| Zmhox1a homeobox protein [Zea
            mays]
          Length = 719

 Score =  333 bits (855), Expect = 1e-88
 Identities = 193/458 (42%), Positives = 263/458 (57%), Gaps = 13/458 (2%)
 Frame = -2

Query: 1398 SSEPSNSAVSPVTXXXXXXXXXKSAPSNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWK 1219
            S+E   + V P             + ++EFSQ RK + Y+L ++N+EQSLI+AY +EGWK
Sbjct: 92   STEHVQAPVQPAAKRRKMSRASNKSSTDEFSQIRKRVRYILNRMNYEQSLIEAYASEGWK 151

Query: 1218 GLSLEKIRPEKELERAKSEILQCKLRIRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMF 1039
              SL+KIRPEKELERAKSEIL+CKLRIR+ F+ +DSLLS G+++E LFD  GEI  ED+F
Sbjct: 152  NQSLDKIRPEKELERAKSEILRCKLRIREVFRNIDSLLSKGKIDETLFDSEGEISCEDIF 211

Query: 1038 CAKCGSKDISADNDIILCDGICDRAFHQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLD 859
            C+ CGS D +  NDIILCDG CDR FHQ CL+PPL T +IP  D+GWLCPACDCK+DC+D
Sbjct: 212  CSTCGSNDATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDCKIDCID 271

Query: 858  LFNDSQGTDFSIEDTWEKIFPEATAVANGNNQFDDSIYPSEDSEDYDYQP----DHVEG- 694
            L N+  G++ SIED+WEK+FP+A A+AN + Q D    PS+DS+D D+ P    +HV G 
Sbjct: 272  LINELHGSNISIEDSWEKVFPDAAAMANDSKQDDAFDLPSDDSDDNDFDPNMPEEHVVGK 331

Query: 693  ---NAXXXXXXXXXXXXXXXXXXXDLGQP-VQNKIDYLGL--XXXXXXXXXXXXXXXXXX 532
               ++                   D  +P +  K+D L L                    
Sbjct: 332  DEESSEEDEDGGSDSDDSDFLTCSDDSEPLIDKKVDDLRLPSEDSEDDDYDPAGPDSDKD 391

Query: 531  XXXXXDLNESDFMSDSDDFCADLCKTVNANAVSSNLCDSEPLDGSGQLRATMQFPLNAEN 352
                   +ESDF SDSDDFC ++ K+   + VSS L     +    ++ A  +   +A++
Sbjct: 392  VEKKSSSDESDFTSDSDDFCKEISKS-GHDEVSSPLLPDAKVGDMEKITAQAKTTSSADD 450

Query: 351  PLVEVDAGQGTNYPTSKKRQRESSDFKKLHDEVDADESSKPSQNE--SEKSTVKKIKKNV 178
            P+ E +  QG   P S++RQ E  D+KKL+DE   + SS  S +E  S K+T   IK N 
Sbjct: 451  PM-ETEIDQGVVLPDSRRRQAERLDYKKLYDEAYGEASSDSSDDEEWSGKNT-PIIKSN- 507

Query: 177  SREEPSKLPDENAQSSSNQRGSRVKHIVKKGNTQDISK 64
                     +E   +S   +GSRV H   +  TQ   K
Sbjct: 508  ---------EEGEANSPAGKGSRVVHHNDELTTQSTKK 536


>emb|CAB51951.1| homeodomain transcription factor [Zea mays]
          Length = 719

 Score =  333 bits (855), Expect = 1e-88
 Identities = 193/458 (42%), Positives = 263/458 (57%), Gaps = 13/458 (2%)
 Frame = -2

Query: 1398 SSEPSNSAVSPVTXXXXXXXXXKSAPSNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWK 1219
            S+E   + V P             + ++EFSQ RK + Y+L ++N+EQSLI+AY +EGWK
Sbjct: 92   STEHVQAPVQPAAKRRKMSRASNKSSTDEFSQIRKQVRYILNRMNYEQSLIEAYASEGWK 151

Query: 1218 GLSLEKIRPEKELERAKSEILQCKLRIRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMF 1039
              SL+KIRPEKELERAKSEIL+CKLRIR+ F+ +DSLLS G+++E LFD  GEI  ED+F
Sbjct: 152  NQSLDKIRPEKELERAKSEILRCKLRIREVFRNIDSLLSKGKIDETLFDSEGEISCEDIF 211

Query: 1038 CAKCGSKDISADNDIILCDGICDRAFHQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLD 859
            C+ CGS D +  NDIILCDG CDR FHQ CL+PPL T +IP  D+GWLCPACDCK+DC+D
Sbjct: 212  CSTCGSNDATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDCKIDCID 271

Query: 858  LFNDSQGTDFSIEDTWEKIFPEATAVANGNNQFDDSIYPSEDSEDYDYQP----DHVEG- 694
            L N+  G++ SIED+WEK+FP+A A+AN + Q D    PS+DS+D D+ P    +HV G 
Sbjct: 272  LINELHGSNISIEDSWEKVFPDAAAMANDSKQDDAFDLPSDDSDDNDFDPNMPEEHVVGK 331

Query: 693  ---NAXXXXXXXXXXXXXXXXXXXDLGQP-VQNKIDYLGL--XXXXXXXXXXXXXXXXXX 532
               ++                   D  +P +  K+D L L                    
Sbjct: 332  DEESSEEDEDGGSDSDDSDFLTCSDDSEPLIDKKVDDLRLPSEDSEDDDYDPAGPDSDKD 391

Query: 531  XXXXXDLNESDFMSDSDDFCADLCKTVNANAVSSNLCDSEPLDGSGQLRATMQFPLNAEN 352
                   +ESDF SDSDDFC ++ K+   + VSS L     +    ++ A  +   +A++
Sbjct: 392  VEKKSSSDESDFTSDSDDFCKEISKS-GHDEVSSPLLPDAKVGDMEKITAQAKTTSSADD 450

Query: 351  PLVEVDAGQGTNYPTSKKRQRESSDFKKLHDEVDADESSKPSQNE--SEKSTVKKIKKNV 178
            P+ E +  QG   P S++RQ E  D+KKL+DE   + SS  S +E  S K+T   IK N 
Sbjct: 451  PM-ETEIDQGVVLPDSRRRQAERLDYKKLYDEAYGEASSDSSDDEEWSGKNT-PIIKSN- 507

Query: 177  SREEPSKLPDENAQSSSNQRGSRVKHIVKKGNTQDISK 64
                     +E   +S   +GSRV H   +  TQ   K
Sbjct: 508  ---------EEGEANSPAGKGSRVVHHNDELTTQSTKK 536


>dbj|BAJ99831.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1240

 Score =  330 bits (847), Expect = 9e-88
 Identities = 186/450 (41%), Positives = 262/450 (58%), Gaps = 15/450 (3%)
 Frame = -2

Query: 1404 KISSEPSNSAVSPVTXXXXXXXXXKSAPSNEFSQRRKHISYLLRKINFEQSLIDAYVNEG 1225
            K  S+  ++ V P           K  P +E S+ RK I Y+L ++N++QS ++AY NEG
Sbjct: 102  KPPSDSVDAVVKPPAKRIKRDRPAKGGPDDELSKIRKRIRYVLNRMNYQQSFLEAYANEG 161

Query: 1224 WKGLSLEKIRPEKELERAKSEILQCKLRIRDAFQQLDSLLSIGRLEENLFDDNGEIDSED 1045
            WK  SLEKIRPEKELERAK+EI++CKLRIR+AFQ LD LL++G+LEE+LFD  GEI S+D
Sbjct: 162  WKNQSLEKIRPEKELERAKAEIMRCKLRIREAFQNLDHLLTLGKLEESLFDSEGEISSDD 221

Query: 1044 MFCAKCGSKDISADNDIILCDGICDRAFHQKCLSPPLATNEIPPEDQGWLCPACDCKVDC 865
            + CA C  +D++ +NDIILCDG CDR FHQ CL+PPL T +IP  ++GWLCPACDCK+DC
Sbjct: 222  IVCATCSLQDVTLNNDIILCDGACDRGFHQNCLNPPLLTKDIPEGEEGWLCPACDCKIDC 281

Query: 864  LDLFNDSQGTDFSIEDTWEKIFPEATAVANGNNQFDDSIYPSEDSEDYDYQPD------- 706
            ++L N+ QGTD  I D+WEK+FPEA AVA+G+ Q D    PS+DSED D+ P+       
Sbjct: 282  IELINELQGTDLDINDSWEKVFPEAAAVAHGSMQNDIPDLPSDDSEDDDFDPNISEEHVS 341

Query: 705  -HVEGNAXXXXXXXXXXXXXXXXXXXDLGQPV--QNKIDYLGLXXXXXXXXXXXXXXXXX 535
             HVEG++                   +  + V  + K+D LGL                 
Sbjct: 342  GHVEGSSEEEGDEGSDSDDSNFITSSENSEHVKEKEKVDDLGLPSEDSEDDDYDPEGPDS 401

Query: 534  XXXXXXDLNESDFMSDSDDFCADLCKTVNANAVSSNL---CDSEPLDGSGQLRATMQFPL 364
                    +ESDF SDSDDFCA++ K+   + VSS       +  L+G+     T    L
Sbjct: 402  DKDIEEKQDESDFTSDSDDFCAEITKSCGKDEVSSGPKVGGRTNDLEGAPVRPNTSMSHL 461

Query: 363  NAENPLVEVDAGQGTNYPTSKKRQRESSDFKKLHDEV--DADESSKPSQNESEKSTVKKI 190
              ++  ++ D        +S++RQ +  D+KKL+D+   +A   S  ++  S KST+K+ 
Sbjct: 462  TTKDLEIDQDV-----ILSSRRRQVQQLDYKKLYDDAYGEAPSDSSDAEEWSGKSTLKE- 515

Query: 189  KKNVSREEPSKLPDENAQSSSNQRGSRVKH 100
                  EE +++     +SS   RG+R  H
Sbjct: 516  ----DNEERNEVDSFACKSS---RGTRAVH 538


>gb|AFW78854.1| putative homeodomain-like transcription factor superfamily protein
            [Zea mays]
          Length = 693

 Score =  329 bits (844), Expect = 2e-87
 Identities = 184/421 (43%), Positives = 242/421 (57%), Gaps = 14/421 (3%)
 Frame = -2

Query: 1320 SNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKLR 1141
            ++EFSQ RK + Y+L ++N+EQSLI+AY +EGWK  SL+K RPEKELERAKSEIL+CKLR
Sbjct: 119  TDEFSQIRKRVRYILNRMNYEQSLIEAYASEGWKNQSLDKTRPEKELERAKSEILRCKLR 178

Query: 1140 IRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRAF 961
            IR+ FQ +DSLLS G+++E+LFD  GEI  ED+FCA CGSK+ +  NDIILCDG CDR F
Sbjct: 179  IREVFQNIDSLLSKGKIDESLFDSEGEISCEDIFCATCGSKNATLGNDIILCDGACDRGF 238

Query: 960  HQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATAV 781
            HQ CL+PPL T +IP  D+GWLCPACDCK+DC+DL N+ QG+D SIED WEK+FPEA A+
Sbjct: 239  HQNCLNPPLRTEDIPMGDEGWLCPACDCKLDCIDLINELQGSDISIEDPWEKVFPEAAAM 298

Query: 780  ANGNNQFDDSIYPSEDSEDYDYQP----DHVEGNAXXXXXXXXXXXXXXXXXXXDL---- 625
             NG+ Q +    PS+DS+D D+ P    +HV                       D     
Sbjct: 299  TNGSKQDEAFDLPSDDSDDNDFDPNMPEEHVASKEEESSEEEEDDDGGSDSDDSDFLTCS 358

Query: 624  --GQPV--QNKIDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLN--ESDFMSDSDDFCADL 463
               +P+  + K+D LGL                         N  ESDF SDSDDFC ++
Sbjct: 359  DDLEPLIDKKKVDDLGLPSEDSEDDDYDPAGPDSDKDVEKKSNSDESDFTSDSDDFCKEI 418

Query: 462  CKTVNANAVSSNLCDSEPLDGSGQLRATMQFPLNAENPLVEVDAGQGTNYPTSKKRQRES 283
             K+   + VSS       +    +  A      +A++P+ E +  Q    P S++RQ E 
Sbjct: 419  KKSGGHDEVSSPPLPDVKVGDMEKNTAQSNTISSADDPM-ETEIDQSVVLPVSRRRQAER 477

Query: 282  SDFKKLHDEVDADESSKPSQNESEKSTVKKIKKNVSREEPSKLPDENAQSSSNQRGSRVK 103
             D+K+L+DE   + SS  S  E        IK N          +E    S   +GSRV 
Sbjct: 478  LDYKRLYDEAYGEASSDSSDEEEWSGKNTPIKSN----------EEGEVGSPAGKGSRVA 527

Query: 102  H 100
            H
Sbjct: 528  H 528


>gb|EOX98399.1| Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain,
            putative isoform 1 [Theobroma cacao]
            gi|508706504|gb|EOX98400.1| Homeodomain-like protein with
            RING/FYVE/PHD-type zinc finger domain, putative isoform 1
            [Theobroma cacao]
          Length = 950

 Score =  326 bits (836), Expect = 2e-86
 Identities = 178/400 (44%), Positives = 234/400 (58%), Gaps = 2/400 (0%)
 Frame = -2

Query: 1320 SNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKLR 1141
            ++EFS+ R H+ YLL +IN+E+SLI AY  EGWKGLSLEK++PEKEL+RA SEIL+ KL+
Sbjct: 399  ADEFSRIRTHLRYLLNRINYERSLIAAYSTEGWKGLSLEKLKPEKELQRATSEILRRKLK 458

Query: 1140 IRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRAF 961
            IRD FQ +DSL + G+L E+LFD  G+IDSED+FCAKCGSKD+SA+NDIILCDG CDR F
Sbjct: 459  IRDLFQHIDSLCAEGKLPESLFDSEGQIDSEDIFCAKCGSKDLSANNDIILCDGACDRGF 518

Query: 960  HQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATAV 781
            HQ CL PPL   +IPP+D+GWLCP CDCKVDC++L N+SQGT FSI D+WEK+FPEA   
Sbjct: 519  HQYCLQPPLLKEDIPPDDEGWLCPGCDCKVDCIELVNESQGTSFSITDSWEKVFPEAAVA 578

Query: 780  ANGNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLGQPVQNKI 601
            A G NQ  +   PS+DS+D DY PD  E +                    +L  P   K+
Sbjct: 579  AAGQNQDPNFGLPSDDSDDNDYNPDGSETDEKDHGDESSSEESEFTSTSEELEVPA--KV 636

Query: 600  D-YLGLXXXXXXXXXXXXXXXXXXXXXXXDLNESDFMSDSDDFCADLCKTVNANAVSSNL 424
            D YLGL                       + + SDF SDS+D  A L + + +      +
Sbjct: 637  DQYLGLPSDDSEDDDYDPDGPNHDEVVKPESSSSDFSSDSEDLDAMLEEDITSQKDEGPM 696

Query: 423  CDSEPLDGSGQL-RATMQFPLNAENPLVEVDAGQGTNYPTSKKRQRESSDFKKLHDEVDA 247
             +S P D   +  +   +  +N E   +   A +      SKKR  E  D+K+L+DE   
Sbjct: 697  ANSAPRDSKRRKPKLGEKESMNDELLSIMEPASEQDGSAISKKRSIERLDYKRLYDETYG 756

Query: 246  DESSKPSQNESEKSTVKKIKKNVSREEPSKLPDENAQSSS 127
            +  S  S +E         K+N    E +  P+    S S
Sbjct: 757  NVPSSSSDDEDWSDITAPRKRNKCTAEVASAPENGNVSVS 796


>dbj|BAC15622.1| PHD-finger family homeodomain protein [Oryza sativa Japonica Group]
          Length = 698

 Score =  326 bits (836), Expect = 2e-86
 Identities = 187/453 (41%), Positives = 246/453 (54%), Gaps = 29/453 (6%)
 Frame = -2

Query: 1323 PSNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKL 1144
            P +++   RK + Y+L ++N+EQSLI AY +EGWKG SLEKIRPEKELERAK EIL+CK 
Sbjct: 152  PKDDYLMIRKRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKVEILRCKS 211

Query: 1143 RIRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRA 964
            RIR+AF+ LDSLLS G+L+E++FD  GEI SED+FCA CGSKD++  NDIILCDGICDR 
Sbjct: 212  RIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRG 271

Query: 963  FHQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATA 784
            FHQ CL+PPL   +IP  D+GWLCPACDCK+DC+D+ N+ QG   SI D+WEK+FPEA +
Sbjct: 272  FHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEKVFPEAAS 331

Query: 783  VANGNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLGQPVQNK 604
              NG+ Q D S  PS+DS D DY P   +G+                       +  ++ 
Sbjct: 332  FLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEGLDSDDSSSEDSESS 391

Query: 603  -------------IDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLN-----ESDFMSDSDD 478
                         +D LGL                       + N     ESDF SDSDD
Sbjct: 392  EKEKSKTSQNGRTVDDLGLPSEDSEDGDFDPAGPDSDKEQNDESNSDQSDESDFTSDSDD 451

Query: 477  FCADLCKTVNANAV----SSNLCDSEPLDGSGQLRATMQFPLNAEN---PLVEVDAGQGT 319
            FCA++ K+   + +    SS +   +  DGSG          NAEN     +E +  Q  
Sbjct: 452  FCAEIAKSCGQDEISGPSSSQIRTVDRTDGSG-----FDGEPNAENSNLAFMETELEQDM 506

Query: 318  NYPTSKKRQRESSDFKKLHDEVDADESSKPSQNESEKSTVKKIKKNVSREEPSKLPDENA 139
              P S KRQ E  D+KKL++E     SS  S +E         K N+   E   L +   
Sbjct: 507  VLPISSKRQVERLDYKKLYNEAYGKASSDSSDDEEWYGNSTPEKGNLEDSETDSLAESPQ 566

Query: 138  QSSSNQRGSRVKHIVKKGNTQDI----SKLDQQ 52
                  R + V++   +   Q++    S  DQQ
Sbjct: 567  GGKGFSRRAPVRYHNNEHTPQNVRPGGSVSDQQ 599


>ref|NP_001057214.1| Os06g0229300 [Oryza sativa Japonica Group]
            gi|22830607|dbj|BAC15621.1| PHD-finger family homeodomain
            protein [Oryza sativa Japonica Group]
            gi|51535397|dbj|BAD37267.1| PHD-finger family homeodomain
            protein [Oryza sativa Japonica Group]
            gi|113595254|dbj|BAF19128.1| Os06g0229300 [Oryza sativa
            Japonica Group] gi|215768196|dbj|BAH00425.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|284431756|gb|ADB84619.1| PHD-finger family homeodomain
            protein [Oryza sativa Japonica Group]
          Length = 792

 Score =  326 bits (836), Expect = 2e-86
 Identities = 187/453 (41%), Positives = 246/453 (54%), Gaps = 29/453 (6%)
 Frame = -2

Query: 1323 PSNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKL 1144
            P +++   RK + Y+L ++N+EQSLI AY +EGWKG SLEKIRPEKELERAK EIL+CK 
Sbjct: 152  PKDDYLMIRKRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKVEILRCKS 211

Query: 1143 RIRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRA 964
            RIR+AF+ LDSLLS G+L+E++FD  GEI SED+FCA CGSKD++  NDIILCDGICDR 
Sbjct: 212  RIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRG 271

Query: 963  FHQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATA 784
            FHQ CL+PPL   +IP  D+GWLCPACDCK+DC+D+ N+ QG   SI D+WEK+FPEA +
Sbjct: 272  FHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEKVFPEAAS 331

Query: 783  VANGNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLGQPVQNK 604
              NG+ Q D S  PS+DS D DY P   +G+                       +  ++ 
Sbjct: 332  FLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEGLDSDDSSSEDSESS 391

Query: 603  -------------IDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLN-----ESDFMSDSDD 478
                         +D LGL                       + N     ESDF SDSDD
Sbjct: 392  EKEKSKTSQNGRTVDDLGLPSEDSEDGDFDPAGPDSDKEQNDESNSDQSDESDFTSDSDD 451

Query: 477  FCADLCKTVNANAV----SSNLCDSEPLDGSGQLRATMQFPLNAEN---PLVEVDAGQGT 319
            FCA++ K+   + +    SS +   +  DGSG          NAEN     +E +  Q  
Sbjct: 452  FCAEIAKSCGQDEISGPSSSQIRTVDRTDGSG-----FDGEPNAENSNLAFMETELEQDM 506

Query: 318  NYPTSKKRQRESSDFKKLHDEVDADESSKPSQNESEKSTVKKIKKNVSREEPSKLPDENA 139
              P S KRQ E  D+KKL++E     SS  S +E         K N+   E   L +   
Sbjct: 507  VLPISSKRQVERLDYKKLYNEAYGKASSDSSDDEEWYGNSTPEKGNLEDSETDSLAESPQ 566

Query: 138  QSSSNQRGSRVKHIVKKGNTQDI----SKLDQQ 52
                  R + V++   +   Q++    S  DQQ
Sbjct: 567  GGKGFSRRAPVRYHNNEHTPQNVRPGGSVSDQQ 599


>gb|EEC80271.1| hypothetical protein OsI_22252 [Oryza sativa Indica Group]
          Length = 830

 Score =  326 bits (836), Expect = 2e-86
 Identities = 187/453 (41%), Positives = 246/453 (54%), Gaps = 29/453 (6%)
 Frame = -2

Query: 1323 PSNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKL 1144
            P +++   RK + Y+L ++N+EQSLI AY +EGWKG SLEKIRPEKELERAK EIL+CK 
Sbjct: 190  PKDDYLMIRKRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKVEILRCKS 249

Query: 1143 RIRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRA 964
            RIR+AF+ LDSLLS G+L+E++FD  GEI SED+FCA CGSKD++  NDIILCDGICDR 
Sbjct: 250  RIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRG 309

Query: 963  FHQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATA 784
            FHQ CL+PPL   +IP  D+GWLCPACDCK+DC+D+ N+ QG   SI D+WEK+FPEA +
Sbjct: 310  FHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEKVFPEAAS 369

Query: 783  VANGNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLGQPVQNK 604
              NG+ Q D S  PS+DS D DY P   +G+                       +  ++ 
Sbjct: 370  FLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEGLDSDDSSSEDSESS 429

Query: 603  -------------IDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLN-----ESDFMSDSDD 478
                         +D LGL                       + N     ESDF SDSDD
Sbjct: 430  EKEKSKTSQNGRTVDDLGLPSEDSEDGDFDPAGPDSDKEQNDESNSDQSDESDFTSDSDD 489

Query: 477  FCADLCKTVNANAV----SSNLCDSEPLDGSGQLRATMQFPLNAEN---PLVEVDAGQGT 319
            FCA++ K+   + +    SS +   +  DGSG          NAEN     +E +  Q  
Sbjct: 490  FCAEIAKSCGQDEISGPSSSQIRTVDRTDGSG-----FDGEPNAENSNLAFMETELEQDM 544

Query: 318  NYPTSKKRQRESSDFKKLHDEVDADESSKPSQNESEKSTVKKIKKNVSREEPSKLPDENA 139
              P S KRQ E  D+KKL++E     SS  S +E         K N+   E   L +   
Sbjct: 545  VLPISSKRQVERLDYKKLYNEAYGKASSDSSDDEEWYGNSTPEKGNLEDSETDSLAESPQ 604

Query: 138  QSSSNQRGSRVKHIVKKGNTQDI----SKLDQQ 52
                  R + V++   +   Q++    S  DQQ
Sbjct: 605  GGKGFSRRAPVRYHNNEHTPQNVRPGGSVSDQQ 637


>ref|XP_006643655.1| PREDICTED: homeobox protein HOX1A-like isoform X3 [Oryza brachyantha]
          Length = 814

 Score =  324 bits (831), Expect = 6e-86
 Identities = 186/466 (39%), Positives = 248/466 (53%), Gaps = 25/466 (5%)
 Frame = -2

Query: 1323 PSNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKL 1144
            P N++   RK + Y+L ++N+EQSLI AY +EGWKG SLEKIRPEKELERAK+EIL+CKL
Sbjct: 152  PKNDYLSIRKRVRYILNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKAEILRCKL 211

Query: 1143 RIRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRA 964
            RIR+AFQ LDSLLS G+LEE+LFD  GEI SED+FCA C SKD++  NDIILCDGICDR 
Sbjct: 212  RIREAFQSLDSLLSEGKLEESLFDSAGEISSEDIFCAICSSKDVTLKNDIILCDGICDRG 271

Query: 963  FHQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATA 784
            FHQ CL+PPL    IPP D+GWLCPACDCK+DC+D+ N+ QG   SI D+WEK+FPEA +
Sbjct: 272  FHQYCLNPPLLAEHIPPGDEGWLCPACDCKLDCIDVLNELQGVKLSIHDSWEKVFPEAAS 331

Query: 783  VANGNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLG------ 622
              NG+ Q D S  PS+DS D DY P   +G+                             
Sbjct: 332  FVNGSKQIDASDLPSDDSADNDYDPALPQGHKVDEDQSSGEDGDEGSESDDSSSDEDSDS 391

Query: 621  --------QPVQNKIDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLNESD------FMSDS 484
                       +  +D LGL                       D + SD      F SDS
Sbjct: 392  SENEKSKTSKNERTVDDLGLPSEDSEDGDFDPAGPDSDKEQNDDESNSDQSDESDFTSDS 451

Query: 483  DDFCADLCKT-VNANAVSSNLCDSEPLDGS-GQLRATMQFPLNAENPLVEVDAGQGTNYP 310
            DDFCA++ K+ V       +L     +D + G    +     N+    +E +  Q    P
Sbjct: 452  DDFCAEIAKSCVQDETSGPSLSQIRTVDHTVGSAFDSEPTAENSNLAFMEAELEQDMVLP 511

Query: 309  TSKKRQRESSDFKKLHDEVDADESSKPSQNESEKSTVKKIKKNVSREEPSKLPDENAQSS 130
             S KRQ E  D+K+L+DE     SS  S +E         ++N+   E   L +   +  
Sbjct: 512  VSSKRQVERLDYKQLYDEAYGKASSDSSDDEEWSGDSAHQEENLEDSETDLLAESPQRGK 571

Query: 129  SNQRGSRVKHIVKKGNTQDI---SKLDQQQPSKAIYESTSDRAQEK 1
            +  R + V+H   +   Q++     +  QQ      +S    A+++
Sbjct: 572  NFTRRAAVRHQNNEHTPQNVRSGGSVSDQQTEVLCSDSNGSAARKR 617


>ref|XP_006643653.1| PREDICTED: homeobox protein HOX1A-like isoform X1 [Oryza brachyantha]
            gi|573911872|ref|XP_006643654.1| PREDICTED: homeobox
            protein HOX1A-like isoform X2 [Oryza brachyantha]
          Length = 836

 Score =  324 bits (831), Expect = 6e-86
 Identities = 186/466 (39%), Positives = 248/466 (53%), Gaps = 25/466 (5%)
 Frame = -2

Query: 1323 PSNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKL 1144
            P N++   RK + Y+L ++N+EQSLI AY +EGWKG SLEKIRPEKELERAK+EIL+CKL
Sbjct: 152  PKNDYLSIRKRVRYILNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKAEILRCKL 211

Query: 1143 RIRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRA 964
            RIR+AFQ LDSLLS G+LEE+LFD  GEI SED+FCA C SKD++  NDIILCDGICDR 
Sbjct: 212  RIREAFQSLDSLLSEGKLEESLFDSAGEISSEDIFCAICSSKDVTLKNDIILCDGICDRG 271

Query: 963  FHQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATA 784
            FHQ CL+PPL    IPP D+GWLCPACDCK+DC+D+ N+ QG   SI D+WEK+FPEA +
Sbjct: 272  FHQYCLNPPLLAEHIPPGDEGWLCPACDCKLDCIDVLNELQGVKLSIHDSWEKVFPEAAS 331

Query: 783  VANGNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLG------ 622
              NG+ Q D S  PS+DS D DY P   +G+                             
Sbjct: 332  FVNGSKQIDASDLPSDDSADNDYDPALPQGHKVDEDQSSGEDGDEGSESDDSSSDEDSDS 391

Query: 621  --------QPVQNKIDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLNESD------FMSDS 484
                       +  +D LGL                       D + SD      F SDS
Sbjct: 392  SENEKSKTSKNERTVDDLGLPSEDSEDGDFDPAGPDSDKEQNDDESNSDQSDESDFTSDS 451

Query: 483  DDFCADLCKT-VNANAVSSNLCDSEPLDGS-GQLRATMQFPLNAENPLVEVDAGQGTNYP 310
            DDFCA++ K+ V       +L     +D + G    +     N+    +E +  Q    P
Sbjct: 452  DDFCAEIAKSCVQDETSGPSLSQIRTVDHTVGSAFDSEPTAENSNLAFMEAELEQDMVLP 511

Query: 309  TSKKRQRESSDFKKLHDEVDADESSKPSQNESEKSTVKKIKKNVSREEPSKLPDENAQSS 130
             S KRQ E  D+K+L+DE     SS  S +E         ++N+   E   L +   +  
Sbjct: 512  VSSKRQVERLDYKQLYDEAYGKASSDSSDDEEWSGDSAHQEENLEDSETDLLAESPQRGK 571

Query: 129  SNQRGSRVKHIVKKGNTQDI---SKLDQQQPSKAIYESTSDRAQEK 1
            +  R + V+H   +   Q++     +  QQ      +S    A+++
Sbjct: 572  NFTRRAAVRHQNNEHTPQNVRSGGSVSDQQTEVLCSDSNGSAARKR 617


>emb|CBI22504.3| unnamed protein product [Vitis vinifera]
          Length = 977

 Score =  322 bits (824), Expect = 4e-85
 Identities = 192/454 (42%), Positives = 258/454 (56%), Gaps = 19/454 (4%)
 Frame = -2

Query: 1320 SNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKLR 1141
            ++EF++ RKH+ YLL ++++EQ+LIDAY  EGWKG S+EK++PEKEL+RA SEI + KL+
Sbjct: 217  ADEFARIRKHLRYLLNRMSYEQNLIDAYSAEGWKGQSVEKLKPEKELQRASSEISRRKLQ 276

Query: 1140 IRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRAF 961
            IRD FQ LDSL + GR  E+LFD  G+IDSED+FCAKC SKD+SADNDIILCDG CDR F
Sbjct: 277  IRDLFQHLDSLCAEGRFPESLFDSEGQIDSEDIFCAKCESKDMSADNDIILCDGACDRGF 336

Query: 960  HQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATAV 781
            HQ CL PPL   EIPP+D+GWLCPACDCKVDC+DL NDSQGT  S+ D+WEK+FPEA A 
Sbjct: 337  HQFCLEPPLLKEEIPPDDEGWLCPACDCKVDCMDLLNDSQGTKLSVIDSWEKVFPEAAAA 396

Query: 780  ANGNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLGQP----- 616
              GNNQ ++S + S+DSED DY PD  E +                    +  +      
Sbjct: 397  --GNNQDNNSGFSSDDSEDNDYDPDCPEVDEKGQGDKSSSDKFDESDEFDESDESDFTSA 454

Query: 615  ------VQNKIDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLNESDFMSDSDDFCADLCKT 454
                    N    LGL                         + SDF SDS+DF A L + 
Sbjct: 455  SDDMVVSPNNEQCLGLPSDDSEDDDFDPDAPEIDEQVNQGSSSSDFTSDSEDFTATLDR- 513

Query: 453  VNANAVSSNLCDSEP-LDGSGQLRATMQFPLNAE-NPLVEVDAGQGTNYPTSKKRQRESS 280
                    N  D+E  LD   +     +  L  E   ++E ++GQ  N P S KR  E  
Sbjct: 514  -------RNFSDNEDGLDEQRRFGRKKKDTLKDELLSVLESNSGQ-DNAPLSAKRHVERL 565

Query: 279  DFKKLHDEVDADESSKPSQNES-EKSTVKKIKKNVSREEPSKLPDENAQSSSNQRGSR-V 106
            D+KKLHDE   + SS  S +E   ++ + + +KN+S    S  P+ N   + N   ++ +
Sbjct: 566  DYKKLHDEAYGNVSSDSSDDEDWTENVIPRKRKNLSGNVASVSPNGNTSITENGTNTKDI 625

Query: 105  KHIVKKG----NTQDISKLDQQQPSKAIYESTSD 16
            KH ++        +   KL+ +  + ++ ES  D
Sbjct: 626  KHDLEAAGCTPKRRTRQKLNFESTNNSLAESHKD 659


>ref|XP_002269077.1| PREDICTED: homeobox protein HAT3.1-like [Vitis vinifera]
          Length = 968

 Score =  322 bits (824), Expect = 4e-85
 Identities = 192/454 (42%), Positives = 258/454 (56%), Gaps = 19/454 (4%)
 Frame = -2

Query: 1320 SNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKLR 1141
            ++EF++ RKH+ YLL ++++EQ+LIDAY  EGWKG S+EK++PEKEL+RA SEI + KL+
Sbjct: 217  ADEFARIRKHLRYLLNRMSYEQNLIDAYSAEGWKGQSVEKLKPEKELQRASSEISRRKLQ 276

Query: 1140 IRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRAF 961
            IRD FQ LDSL + GR  E+LFD  G+IDSED+FCAKC SKD+SADNDIILCDG CDR F
Sbjct: 277  IRDLFQHLDSLCAEGRFPESLFDSEGQIDSEDIFCAKCESKDMSADNDIILCDGACDRGF 336

Query: 960  HQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATAV 781
            HQ CL PPL   EIPP+D+GWLCPACDCKVDC+DL NDSQGT  S+ D+WEK+FPEA A 
Sbjct: 337  HQFCLEPPLLKEEIPPDDEGWLCPACDCKVDCMDLLNDSQGTKLSVIDSWEKVFPEAAAA 396

Query: 780  ANGNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLGQP----- 616
              GNNQ ++S + S+DSED DY PD  E +                    +  +      
Sbjct: 397  --GNNQDNNSGFSSDDSEDNDYDPDCPEVDEKGQGDKSSSDKFDESDEFDESDESDFTSA 454

Query: 615  ------VQNKIDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLNESDFMSDSDDFCADLCKT 454
                    N    LGL                         + SDF SDS+DF A L + 
Sbjct: 455  SDDMVVSPNNEQCLGLPSDDSEDDDFDPDAPEIDEQVNQGSSSSDFTSDSEDFTATLDR- 513

Query: 453  VNANAVSSNLCDSEP-LDGSGQLRATMQFPLNAE-NPLVEVDAGQGTNYPTSKKRQRESS 280
                    N  D+E  LD   +     +  L  E   ++E ++GQ  N P S KR  E  
Sbjct: 514  -------RNFSDNEDGLDEQRRFGRKKKDTLKDELLSVLESNSGQ-DNAPLSAKRHVERL 565

Query: 279  DFKKLHDEVDADESSKPSQNES-EKSTVKKIKKNVSREEPSKLPDENAQSSSNQRGSR-V 106
            D+KKLHDE   + SS  S +E   ++ + + +KN+S    S  P+ N   + N   ++ +
Sbjct: 566  DYKKLHDEAYGNVSSDSSDDEDWTENVIPRKRKNLSGNVASVSPNGNTSITENGTNTKDI 625

Query: 105  KHIVKKG----NTQDISKLDQQQPSKAIYESTSD 16
            KH ++        +   KL+ +  + ++ ES  D
Sbjct: 626  KHDLEAAGCTPKRRTRQKLNFESTNNSLAESHKD 659


>ref|XP_003569804.1| PREDICTED: homeobox protein HOX1A-like [Brachypodium distachyon]
          Length = 861

 Score =  320 bits (819), Expect = 2e-84
 Identities = 173/390 (44%), Positives = 225/390 (57%), Gaps = 19/390 (4%)
 Frame = -2

Query: 1329 SAPSNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQC 1150
            ++P N+  + R+ + Y+L ++N+EQSLI AY +EGWKG SLEKIRPEKEL+RAK+EIL+C
Sbjct: 147  ASPKNDHIKIRQRVRYILNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELQRAKAEILRC 206

Query: 1149 KLRIRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICD 970
            KLRIR+AFQ +DSLLS G+LEE+LFD  GEI SED+FCA CGSK ++  NDIILCDG C 
Sbjct: 207  KLRIREAFQNMDSLLSEGKLEESLFDSEGEISSEDIFCAICGSKHVTLRNDIILCDGACV 266

Query: 969  RAFHQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEA 790
            R FHQKCL+PPL   +IPP D+GWLCPACDCK+DC+D+ N+ QG+  SI D+WEK+FPE+
Sbjct: 267  RGFHQKCLNPPLLAQDIPPGDEGWLCPACDCKLDCIDVLNELQGSTLSIHDSWEKVFPES 326

Query: 789  TAVANGNNQFDDSIYPSEDSEDYDYQPDHVEG--------------NAXXXXXXXXXXXX 652
              +ANG+NQ   S  PS+DSED DY P   EG                            
Sbjct: 327  ALLANGSNQIGSSDLPSDDSEDNDYSPALAEGQMVDENKSSAEDEDEVSDSDDSDFMTSS 386

Query: 651  XXXXXXXDLGQPVQNK--IDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLNESD--FMSDS 484
                         +NK  +D LGL                         N  +  F SDS
Sbjct: 387  DASELSMKKRSESKNKKTVDDLGLPSEDSGDDDFDPAGPVSSEDQKAKTNSEESDFTSDS 446

Query: 483  DDFCADLCKTVNANAVSSNLCDSEPLDGSGQLRATMQFPLNAENPLV-EVDAGQGTNYPT 307
            DDFCA++ K+   + VS     S+  DG        Q      N ++ E +  Q    P 
Sbjct: 447  DDFCAEIAKSCGQDEVSPP-SSSDHADGIEISAVDNQLGQEDNNRIIMETELDQDVVLPV 505

Query: 306  SKKRQRESSDFKKLHDEVDADESSKPSQNE 217
            S +RQ E  D+++L+DE    E S  S +E
Sbjct: 506  SSRRQVERLDYRRLYDEAYGKEMSDSSDDE 535


>gb|EAZ42623.1| hypothetical protein OsJ_27188 [Oryza sativa Japonica Group]
          Length = 634

 Score =  317 bits (811), Expect = 1e-83
 Identities = 171/380 (45%), Positives = 221/380 (58%), Gaps = 25/380 (6%)
 Frame = -2

Query: 1323 PSNEFSQRRKHISYLLRKINFEQSLIDAYVNEGWKGLSLEKIRPEKELERAKSEILQCKL 1144
            P +++   RK + Y+L ++N+EQSLI AY +EGWKG SLEKIRPEKELERAK EIL+CK 
Sbjct: 228  PKDDYLMIRKRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKVEILRCKS 287

Query: 1143 RIRDAFQQLDSLLSIGRLEENLFDDNGEIDSEDMFCAKCGSKDISADNDIILCDGICDRA 964
            RIR+AF+ LDSLLS G+L+E++FD  GEI SED+FCA CGSKD++  NDIILCDGICDR 
Sbjct: 288  RIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRG 347

Query: 963  FHQKCLSPPLATNEIPPEDQGWLCPACDCKVDCLDLFNDSQGTDFSIEDTWEKIFPEATA 784
            FHQ CL+PPL   +IP  D+GWLCPACDCK+DC+D+ N+ QG   SI D+WEK+FPEA +
Sbjct: 348  FHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEKVFPEAAS 407

Query: 783  VANGNNQFDDSIYPSEDSEDYDYQPDHVEGNAXXXXXXXXXXXXXXXXXXXDLGQPVQNK 604
              NG+ Q D S  PS+DS D DY P   +G+                       +  ++ 
Sbjct: 408  FLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEGLDSDDSSSEDSESS 467

Query: 603  -------------IDYLGLXXXXXXXXXXXXXXXXXXXXXXXDLN-----ESDFMSDSDD 478
                         +D LGL                       + N     ESDF SDSDD
Sbjct: 468  EKEKSKTSQNGRTVDDLGLPSEDSEDGDFDPAGPDSDKEQNDESNSDQSDESDFTSDSDD 527

Query: 477  FCADLCKTVNANAV----SSNLCDSEPLDGSGQLRATMQFPLNAEN---PLVEVDAGQGT 319
            FCA++ K+   + +    SS +   +  DGSG          NAEN     +E +  Q  
Sbjct: 528  FCAEIAKSCGQDEISGPSSSQIRTVDRTDGSG-----FDGEPNAENSNLAFMETELEQDM 582

Query: 318  NYPTSKKRQRESSDFKKLHD 259
              P S KRQ E  D+KKL++
Sbjct: 583  VLPISSKRQVERLDYKKLYN 602