BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00013749
         (438 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   244   9e-63
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc...   243   1e-62
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     240   1e-61
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   239   2e-61
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e...   238   5e-61
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   238   8e-61
gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subc...   234   1e-59
gb|AAP03364.1| putative polyprotein [Oryza sativa Japonica Group]     234   1e-59
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]        233   2e-59
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   233   3e-59
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     233   3e-59
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   231   1e-58
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   230   1e-58
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   230   1e-58
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]     230   1e-58
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc...   229   2e-58
gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-...   229   4e-58
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]         224   7e-57
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc...   224   9e-57
gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Jap...   224   9e-57

>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  244 bits (623), Expect = 9e-63
 Identities = 117/145 (80%), Positives = 134/145 (92%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            +RL+GLSQSTYIDKVL+RF MQN+KKGFLPMSHG+S SK+Q PS+ +ERDRM+ IPYASA
Sbjct: 1034 RRLIGLSQSTYIDKVLIRFNMQNTKKGFLPMSHGISPSKSQRPSTTDERDRMNGIPYASA 1093

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAM+CTR DVSYALS+TSRYQ+DPGE HW AVKNILKYLRRTK+ FLIYGG++EL
Sbjct: 1094 IGSIMYAMICTRQDVSYALSVTSRYQADPGECHWTAVKNILKYLRRTKDAFLIYGGDEEL 1153

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY+DASFQTD+DDYRSQSGFVF
Sbjct: 1154 VVNGYTDASFQTDKDDYRSQSGFVF 1178


>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1050

 Score =  243 bits (621), Expect = 1e-62
 Identities = 117/145 (80%), Positives = 131/145 (90%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLSQSTYIDKVL RF MQ+SKKGFLPMSHG++L K Q P + +ER++M  IPYASA
Sbjct: 772  KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASA 831

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCT PDVSYALS TSRYQSDPGESHWIAVKNILKYLRRTK+ FL+YGG +EL
Sbjct: 832  IGSIMYAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQEEL 891

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             VKGY+DASFQTD+DD+RSQSGFVF
Sbjct: 892  VVKGYTDASFQTDKDDFRSQSGFVF 916


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  240 bits (613), Expect = 1e-61
 Identities = 114/145 (78%), Positives = 129/145 (88%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLSQSTYIDKVL RF M +SKKGFLPMSHG++LSK Q P + +ER++M  +PYASA
Sbjct: 1038 KRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASA 1097

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCTRPDVSYALS TSRYQSDPGE HW AVKNILKYLRRTK+ FL+YGG ++L
Sbjct: 1098 IGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDL 1157

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY+DASFQTD+DDYRSQSGFVF
Sbjct: 1158 VVSGYTDASFQTDKDDYRSQSGFVF 1182


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  239 bits (611), Expect = 2e-61
 Identities = 116/145 (80%), Positives = 129/145 (88%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLSQSTYIDKVL RF MQ+SKKGFLPMSHG++L K Q P + +ER++M  IPYASA
Sbjct: 909  KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASA 968

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCTRPDVSYALS TSRYQSDPGESHWIAVKNILKYLRRTK+ FL YGG +EL
Sbjct: 969  IGSIMYAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLAYGGQEEL 1028

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY+DASFQ D+DD+RSQSGFVF
Sbjct: 1029 VVNGYTDASFQIDKDDFRSQSGFVF 1053


>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 896

 Score =  238 bits (608), Expect = 5e-61
 Identities = 112/145 (77%), Positives = 130/145 (89%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLSQ  YIDKVL RF MQNSK+GFLPM+HG++LSK Q P++ +ERD+M  IPYASA
Sbjct: 618  KRLIGLSQEMYIDKVLNRFNMQNSKRGFLPMAHGINLSKNQCPTTTDERDKMSDIPYASA 677

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAM+CTRPDVSYALS+TSRYQ+DP E HW AVKNILKYLRRTK+ FL+YGG++EL
Sbjct: 678  IGSIMYAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYLRRTKDVFLVYGGDEEL 737

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY+DASFQTD+DDYRSQSGFVF
Sbjct: 738  VVNGYTDASFQTDKDDYRSQSGFVF 762


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77550379|gb|ABA93176.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 938

 Score =  238 bits (606), Expect = 8e-61
 Identities = 114/145 (78%), Positives = 129/145 (88%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLSQSTYIDKVL RF MQ+SKKGFLPMSHG++L K Q P +  ER++M  IPYASA
Sbjct: 757  KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTNERNKMSVIPYASA 816

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCTRPDVSYALS TS+YQSDPGESHWIA+KNILKYLRRTK+ FL+YGG +EL
Sbjct: 817  IGSIMYAMLCTRPDVSYALSATSQYQSDPGESHWIALKNILKYLRRTKDMFLVYGGQEEL 876

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY+DASFQ D+DD+RSQSGFVF
Sbjct: 877  VVNGYTDASFQIDKDDFRSQSGFVF 901


>gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 767

 Score =  234 bits (596), Expect = 1e-59
 Identities = 113/145 (77%), Positives = 127/145 (87%)
 Frame = +2

Query: 2   KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
           KRL+GLSQSTYIDK+L RF MQ SKKGFLPMSHG++L K Q P + +ER++M  IPYASA
Sbjct: 512 KRLIGLSQSTYIDKLLKRFNMQYSKKGFLPMSHGINLGKNQCPQATDERNKMSVIPYASA 571

Query: 182 IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
           IG IMYAMLCTRPDVSYALS TSRYQ DPGESHWIAVKNILKYLRRTK+ FL+YGG +EL
Sbjct: 572 IGCIMYAMLCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYLRRTKDMFLVYGGQEEL 631

Query: 362 AVKGYSDASFQTDQDDYRSQSGFVF 436
            V GY+DASFQTD+DD+RSQS FVF
Sbjct: 632 VVNGYTDASFQTDKDDFRSQSKFVF 656


>gb|AAP03364.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 657

 Score =  234 bits (596), Expect = 1e-59
 Identities = 113/145 (77%), Positives = 127/145 (87%)
 Frame = +2

Query: 2   KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
           KRL+GLSQSTYIDK+L RF MQ SKKGFLPMSHG++L K Q P + +ER++M  IPYASA
Sbjct: 402 KRLIGLSQSTYIDKLLKRFNMQYSKKGFLPMSHGINLGKNQCPQATDERNKMSVIPYASA 461

Query: 182 IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
           IG IMYAMLCTRPDVSYALS TSRYQ DPGESHWIAVKNILKYLRRTK+ FL+YGG +EL
Sbjct: 462 IGCIMYAMLCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYLRRTKDMFLVYGGQEEL 521

Query: 362 AVKGYSDASFQTDQDDYRSQSGFVF 436
            V GY+DASFQTD+DD+RSQS FVF
Sbjct: 522 VVNGYTDASFQTDKDDFRSQSKFVF 546


>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
          Length = 948

 Score =  233 bits (595), Expect = 2e-59
 Identities = 112/145 (77%), Positives = 129/145 (88%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLSQSTYIDKVL RF MQ+SKKGFLPMSH ++L K Q P + +ER++M  IPYASA
Sbjct: 760  KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHDINLGKNQCPQTTDERNKMSVIPYASA 819

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCT PDVSYALS T+RYQSDPGESHWIAVKNILKYLRRT++ FL+YGG +EL
Sbjct: 820  IGSIMYAMLCTCPDVSYALSATNRYQSDPGESHWIAVKNILKYLRRTEDMFLVYGGQEEL 879

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY+DASFQTD+DD+RS+SGFVF
Sbjct: 880  VVNGYTDASFQTDKDDFRSRSGFVF 904


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  233 bits (593), Expect = 3e-59
 Identities = 114/145 (78%), Positives = 128/145 (88%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLSQSTYIDKVL RF MQ+SKKGFLPMSHG++L K Q P + +ER++M  IPYASA
Sbjct: 987  KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASA 1046

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCTR DVSYALS TSRYQSD GESHWIAVKNILKYLRRTK+ FL+YG  +EL
Sbjct: 1047 IGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMFLVYGRQEEL 1106

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY+DASFQTD+DD+RSQSGFVF
Sbjct: 1107 VVNGYTDASFQTDKDDFRSQSGFVF 1131


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  233 bits (593), Expect = 3e-59
 Identities = 114/145 (78%), Positives = 128/145 (88%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLSQSTYIDKVL RF MQ+SKKGFLPMSHG++L K Q P + +ER++M  IPYASA
Sbjct: 900  KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASA 959

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCTR DVSYALS TSRYQSD GESHWIAVKNILKYLRRTK+ FL+YG  +EL
Sbjct: 960  IGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMFLVYGRQEEL 1019

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY+DASFQTD+DD+RSQSGFVF
Sbjct: 1020 VVNGYTDASFQTDKDDFRSQSGFVF 1044


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  231 bits (588), Expect = 1e-58
 Identities = 113/145 (77%), Positives = 126/145 (86%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLSQSTYIDKVL RF MQ+SKKGFLPMSHG++  K Q P + +ER++M  IPYA A
Sbjct: 1502 KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINHGKNQCPQTTDERNKMSVIPYAWA 1561

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCTR DVSYALS TSRYQSDPGESHWIAVKNILKYLRRTK+ FL+YGG +EL
Sbjct: 1562 IGSIMYAMLCTRIDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQEEL 1621

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY DASFQTD+DD+R QSGFVF
Sbjct: 1622 VVNGYIDASFQTDKDDFRLQSGFVF 1646


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  230 bits (587), Expect = 1e-58
 Identities = 109/144 (75%), Positives = 129/144 (89%)
 Frame = +2

Query: 5    RLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASAI 184
            +++GLSQ TYIDKVL RF M +SKKGF+PMSHG++LSKTQ PS+ +ER+RM +IPYASAI
Sbjct: 686  KIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAI 745

Query: 185  GSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDELA 364
            GSIMYAML TRPDV+ ALSMTSRYQSDPGESHWI V+NI KYLRRTK+ FL+YGG++EL 
Sbjct: 746  GSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELV 805

Query: 365  VKGYSDASFQTDQDDYRSQSGFVF 436
            V GY+DASFQTD+DD+RSQSGF F
Sbjct: 806  VSGYTDASFQTDKDDFRSQSGFFF 829


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  230 bits (587), Expect = 1e-58
 Identities = 111/145 (76%), Positives = 127/145 (87%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLS+STYIDKVL  F MQ+SKKGFLPMSHG++L+K Q   +  E+++M  IPYASA
Sbjct: 961  KRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNKNQCLQTTNEQNKMSVIPYASA 1020

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCTRPDVSY LS TSRYQSDP ESHWIAVKNILKYLRRTK+ FL+YGG +EL
Sbjct: 1021 IGSIMYAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKYLRRTKDMFLVYGGQEEL 1080

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY+DASFQTD+DD+RSQSGFVF
Sbjct: 1081 VVNGYTDASFQTDKDDFRSQSGFVF 1105


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  230 bits (587), Expect = 1e-58
 Identities = 111/145 (76%), Positives = 127/145 (87%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLS+STYIDKVL  F MQ+SKKGFLPMSHG++L+K Q   +  E+++M  IPYASA
Sbjct: 903  KRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNKNQCLQTTNEQNKMSVIPYASA 962

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCTRPDVSY LS TSRYQSDP ESHWIAVKNILKYLRRTK+ FL+YGG +EL
Sbjct: 963  IGSIMYAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKYLRRTKDMFLVYGGQEEL 1022

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V GY+DASFQTD+DD+RSQSGFVF
Sbjct: 1023 VVNGYTDASFQTDKDDFRSQSGFVF 1047


>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  229 bits (585), Expect = 2e-58
 Identities = 112/145 (77%), Positives = 128/145 (88%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            +RL+G SQSTYIDKVL RF MQ+SKKGFLP+SHG++L K Q P + +ER++M  IPYASA
Sbjct: 663  RRLIG-SQSTYIDKVLKRFNMQDSKKGFLPLSHGINLGKNQCPQTTDERNKMSVIPYASA 721

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCTRPDV YALS TS+YQSDPGESHWIAVKNILKYLRRTK+ FLIYGG +EL
Sbjct: 722  IGSIMYAMLCTRPDVPYALSATSQYQSDPGESHWIAVKNILKYLRRTKDMFLIYGGQEEL 781

Query: 362  AVKGYSDASFQTDQDDYRSQSGFVF 436
             V  Y+DASFQTD+DD+RSQSGFVF
Sbjct: 782  VVNNYTDASFQTDKDDFRSQSGFVF 806


>gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550175|gb|ABA92972.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 305

 Score =  229 bits (583), Expect = 4e-58
 Identities = 111/145 (76%), Positives = 126/145 (86%)
 Frame = +2

Query: 2   KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
           KRL+GL QSTYIDKVL RF MQ+SKKGFLPMSH ++L K Q   + +ER++M  IPYASA
Sbjct: 21  KRLIGLRQSTYIDKVLKRFNMQDSKKGFLPMSHDINLGKNQCSQTTDERNKMSVIPYASA 80

Query: 182 IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
           IGSIMYAMLCTRPDVSYALS TSRYQSDPGE+HWIAVKNILKYL RTK+ FL+YGG +EL
Sbjct: 81  IGSIMYAMLCTRPDVSYALSATSRYQSDPGETHWIAVKNILKYLIRTKDMFLVYGGQEEL 140

Query: 362 AVKGYSDASFQTDQDDYRSQSGFVF 436
            V  Y+DASFQTD+DD+RSQSGFVF
Sbjct: 141 VVNDYTDASFQTDKDDFRSQSGFVF 165


>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
          Length = 873

 Score =  224 bits (572), Expect = 7e-57
 Identities = 108/139 (77%), Positives = 125/139 (89%)
 Frame = +2

Query: 2    KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
            KRL+GLSQSTYIDKVL RF MQ+SKKGFLPMS+G++L K Q P + +ER++M  IPYASA
Sbjct: 735  KRLVGLSQSTYIDKVLKRFNMQDSKKGFLPMSYGINLGKNQYPQTTDERNKMSVIPYASA 794

Query: 182  IGSIMYAMLCTRPDVSYALSMTSRYQSDPGESHWIAVKNILKYLRRTKEYFLIYGGNDEL 361
            IGSIMYAMLCTR DVSYALS+T+RYQSDPGESHWIAVKNILKYLRRTK+ FL+YGG +EL
Sbjct: 795  IGSIMYAMLCTRLDVSYALSVTNRYQSDPGESHWIAVKNILKYLRRTKDMFLVYGGQEEL 854

Query: 362  AVKGYSDASFQTDQDDYRS 418
             V GY+DASFQTD+DD+RS
Sbjct: 855  VVNGYTDASFQTDKDDFRS 873


>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 649

 Score =  224 bits (571), Expect = 9e-57
 Identities = 109/148 (73%), Positives = 125/148 (84%), Gaps = 3/148 (2%)
 Frame = +2

Query: 2   KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
           KRL+GLSQSTYIDKVL RF MQ+SKKGFLPMSHG++L K Q P + +ER++M  IPYASA
Sbjct: 415 KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASA 474

Query: 182 IGSIMYAMLCTRPDVSYALSMTSRYQS---DPGESHWIAVKNILKYLRRTKEYFLIYGGN 352
           IGSI+Y MLCTRPDVSYALS TSRYQ     PGESHWI VKNILKYLRRTK+ FL+YGG 
Sbjct: 475 IGSIVYGMLCTRPDVSYALSATSRYQGYVPSPGESHWIVVKNILKYLRRTKDMFLVYGGQ 534

Query: 353 DELAVKGYSDASFQTDQDDYRSQSGFVF 436
           +E+ V GY+DASFQTD+DD+R Q GFVF
Sbjct: 535 EEIVVNGYTDASFQTDKDDFRLQFGFVF 562


>gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Japonica Group]
          Length = 637

 Score =  224 bits (571), Expect = 9e-57
 Identities = 109/148 (73%), Positives = 125/148 (84%), Gaps = 3/148 (2%)
 Frame = +2

Query: 2   KRLLGLSQSTYIDKVLLRFAMQNSKKGFLPMSHGVSLSKTQGPSSREERDRMDQIPYASA 181
           KRL+GLSQSTYIDKVL RF MQ+SKKGFLPMSHG++L K Q P + +ER++M  IPYASA
Sbjct: 403 KRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASA 462

Query: 182 IGSIMYAMLCTRPDVSYALSMTSRYQS---DPGESHWIAVKNILKYLRRTKEYFLIYGGN 352
           IGSI+Y MLCTRPDVSYALS TSRYQ     PGESHWI VKNILKYLRRTK+ FL+YGG 
Sbjct: 463 IGSIVYGMLCTRPDVSYALSATSRYQGYVPSPGESHWIVVKNILKYLRRTKDMFLVYGGQ 522

Query: 353 DELAVKGYSDASFQTDQDDYRSQSGFVF 436
           +E+ V GY+DASFQTD+DD+R Q GFVF
Sbjct: 523 EEIVVNGYTDASFQTDKDDFRLQFGFVF 550