BLASTX nr result
ID: Zingiber25_contig00011632
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00011632
(807 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]... 232 1e-58
ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|54035746... 229 7e-58
gb|AHG94942.1| ORF3, partial [Dioscorea bacilliform virus] 226 9e-57
ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus] g... 225 1e-56
gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus] 223 5e-56
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|... 216 6e-54
emb|CAE76628.1| polyprotein [Cacao swollen shoot virus] 210 5e-52
emb|CAE81285.1| polyprotein [Cacao swollen shoot virus] 209 7e-52
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus] 208 2e-51
emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao s... 204 2e-50
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|3478... 204 4e-50
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus] 204 4e-50
gb|ACH86211.1| unknown [Citrus yellow mosaic virus] 203 5e-50
gb|AFM82591.1| polyprotein [Cacao swollen shoot virus] 201 2e-49
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus] 201 3e-49
ref|YP_002916056.1| polyprotein [Sweetpotato badnavirus B] gi|23... 201 3e-49
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus] 200 4e-49
ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16... 200 4e-49
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus] 200 6e-49
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus] 199 1e-48
>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
bacilliform virus GD1]
Length = 1892
Score = 232 bits (592), Expect = 1e-58
Identities = 126/264 (47%), Positives = 163/264 (61%), Gaps = 34/264 (12%)
Frame = +3
Query: 117 SDDFINPFAVEDGGNEFCTDYPQLQRLSEDNIFAVGKEDEFLTEYPQLQRL---SEQIYS 287
+D+ +P E+ GNE Y E+ + A+ +ED L YP L+ L E+++S
Sbjct: 463 NDENPDPEESEEMGNEM--GYETEVEEQEEKV-AMIQEDPDLLPYPHLRELLKNEEKVFS 519
Query: 288 --QKAVSQYRPPVDTTMNPIGYPPTRPKPE-----------------------------P 374
Q VS YRPP DT M P GY P R + P
Sbjct: 520 TQQSEVSSYRPPQDTAMTPAGYAPARGEASSSTHQPMFEGYMPRRPQFKQDRSTEYWQFP 579
Query: 375 SAQQQTGVILTLPMQLGKIEDAFLRWEAITKNVVAMQNFTDTQDKADFIENLLGEAERLT 554
+AQ QTG + +P Q+G DAF RWE+ITKN VA Q FTD++DKA+F+ENLLGE E+LT
Sbjct: 580 TAQGQTGAMFVIPRQIGLFHDAFNRWESITKNYVASQGFTDSKDKAEFMENLLGETEKLT 639
Query: 555 WIQWRMTFPNEYAELVRSADGRNGTQNLISQIRRVFILEDPFQGSTDMQDRAYRDLERLT 734
W+QWRM FP EY E+V +ADGR GTQN++SQ+RRVF LEDP GST +QD AYRDLERL+
Sbjct: 640 WVQWRMNFPTEYQEMVNAADGREGTQNILSQMRRVFTLEDPTTGSTAVQDEAYRDLERLS 699
Query: 735 CSQIKDIIPFMNEYMNLAAKTGHL 806
C+ IKDI+ F+N+Y LAAK+G +
Sbjct: 700 CTNIKDIVSFLNDYARLAAKSGRM 723
>ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|540357465|gb|AGV08293.1| ORF3
[Piper yellow mottle virus]
Length = 1925
Score = 229 bits (585), Expect = 7e-58
Identities = 118/237 (49%), Positives = 152/237 (64%), Gaps = 35/237 (14%)
Frame = +3
Query: 201 EDNIFAVGKEDEFLT-EYPQLQ----RLSEQIYSQKAVSQYRPPVDTTMNPIGYPP---- 353
E+ +A +E+E EYP ++ ++ E +Q +SQYRPP DT M P YPP
Sbjct: 543 EEEGYAAEEEEEIDDMEYPHVRALRLKMQEVFSAQSEISQYRPPQDTAMGPSSYPPAVNI 602
Query: 354 ------TRPKPE--------------------PSAQQQTGVILTLPMQLGKIEDAFLRWE 455
+RP E PSAQQQ G + +P QLG + F RWE
Sbjct: 603 TNEAGPSRPMFEGYNKSGVRFKHKDLADNWTLPSAQQQQGAVFVIPTQLGLFDSVFARWE 662
Query: 456 AITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGTQN 635
+ITKN+VA Q FTD DK DFIENLLGEAE+LTWIQWR T+ EY +++ SADGR GT+N
Sbjct: 663 SITKNLVAAQGFTDPADKVDFIENLLGEAEKLTWIQWRSTYQAEYQQMMNSADGRAGTEN 722
Query: 636 LISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
++SQ+RR+F LEDP GST +QD AYRDLE+LTCS IKD++PF+N+Y+ LAAKTG +
Sbjct: 723 ILSQVRRIFALEDPSTGSTKIQDEAYRDLEQLTCSNIKDLVPFLNDYLRLAAKTGRM 779
>gb|AHG94942.1| ORF3, partial [Dioscorea bacilliform virus]
Length = 1395
Score = 226 bits (575), Expect = 9e-57
Identities = 120/253 (47%), Positives = 156/253 (61%), Gaps = 42/253 (16%)
Frame = +3
Query: 174 DYPQLQRLSEDNIFAVGKEDEFLT-EYPQLQRLSEQIYSQKAVSQYRPPVDTTMNPIGYP 350
DYP+ E+++F + D L +YP LQRL I S A+S+YRPP DTTMNP YP
Sbjct: 40 DYPEG---GEEDVFNLATLDSSLDLDYPTLQRLEATIASS-AISEYRPPEDTTMNPPTYP 95
Query: 351 PTRPKPE-----------------------------------------PSAQQQTGVILT 407
P R + PSAQQ TG +
Sbjct: 96 PARISGQASTSTGQPSTSYSGQPTSSYSQRVPTGVHFRARDYSNNWSLPSAQQNTGAMFY 155
Query: 408 LPMQLGKIEDAFLRWEAITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNE 587
LP++L K ++ F RWE+ITKN+V+ Q+F ++KA+FIENLLGE E+LTWIQWR FP E
Sbjct: 156 LPLELVKFDEVFSRWESITKNLVSQQSFITGKEKAEFIENLLGETEKLTWIQWRTAFPTE 215
Query: 588 YAELVRSADGRNGTQNLISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFM 767
Y L+ SADGR GTQN++S IR +F LEDP++GST +Q++AY DLER++C +KD+IPF+
Sbjct: 216 YETLLASADGREGTQNILSHIRTIFTLEDPYRGSTKVQEQAYLDLERISCRDVKDLIPFL 275
Query: 768 NEYMNLAAKTGHL 806
NEYM LAAKTG L
Sbjct: 276 NEYMRLAAKTGRL 288
>ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus]
gi|113901272|gb|ABI47983.1| ORF3 protein [Dioscorea
bacilliform virus]
Length = 1887
Score = 225 bits (574), Expect = 1e-56
Identities = 126/259 (48%), Positives = 160/259 (61%), Gaps = 29/259 (11%)
Frame = +3
Query: 117 SDDFINPFAVEDGGNEFCTDYPQLQRLSEDNIFAVGKEDEFLTEYPQLQRLSE-QIYSQK 293
S D P E NE D+ +Q L V E +F +YPQL++L + I +
Sbjct: 565 SGDASQPIFDESDDNE---DHELIQEL-------VSLEADF--DYPQLRQLEDCVIAASS 612
Query: 294 AVSQYRPPVDTTMNPIGYPP--------------------TRPKPE--------PSAQQQ 389
AVS Y PP DTTMNP YPP TR KP PSAQQ
Sbjct: 613 AVSNYTPPEDTTMNPPTYPPARIDQAGPSHSGPSYSVPSGTRFKPMNYSANLQLPSAQQT 672
Query: 390 TGVILTLPMQLGKIEDAFLRWEAITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWR 569
TG + +P++L K ++ F RWE+ITKN+ + +F ++KADFIENLLGE E+LTWIQWR
Sbjct: 673 TGAMFYMPLELDKFDEVFSRWESITKNITSQHSFISGREKADFIENLLGETEKLTWIQWR 732
Query: 570 MTFPNEYAELVRSADGRNGTQNLISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIK 749
TF E+ L+ +ADGR GTQN+ISQIR +F LEDPF+GST +Q+ AYRDLER++C ++
Sbjct: 733 TTFNAEFDSLIAAADGREGTQNIISQIRTIFSLEDPFRGSTKIQEDAYRDLERISCKDVQ 792
Query: 750 DIIPFMNEYMNLAAKTGHL 806
DIIPFMNEYM +AAKTG L
Sbjct: 793 DIIPFMNEYMRIAAKTGRL 811
>gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus]
Length = 1295
Score = 223 bits (569), Expect = 5e-56
Identities = 125/259 (48%), Positives = 159/259 (61%), Gaps = 29/259 (11%)
Frame = +3
Query: 117 SDDFINPFAVEDGGNEFCTDYPQLQRLSEDNIFAVGKEDEFLTEYPQLQRLSE-QIYSQK 293
S D P E NE D+ +Q L V E +F +YPQL++L + I +
Sbjct: 565 SGDASQPIFDESDDNE---DHELIQEL-------VSLEADF--DYPQLRQLEDCVIAASS 612
Query: 294 AVSQYRPPVDTTMNPIGYPP--------------------TRPKPE--------PSAQQQ 389
AVS Y PP DTTMNP YPP TR KP PSAQQ
Sbjct: 613 AVSNYTPPEDTTMNPPTYPPARIDQAGPSYSGPSYSVPSGTRFKPMNYSANLQLPSAQQT 672
Query: 390 TGVILTLPMQLGKIEDAFLRWEAITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWR 569
TG + +P++L K ++ F RWE+ITKN+ + +F ++KADFIENLLGE E+LTWIQWR
Sbjct: 673 TGAMFYMPLELDKFDEVFSRWESITKNITSQHSFISGREKADFIENLLGETEKLTWIQWR 732
Query: 570 MTFPNEYAELVRSADGRNGTQNLISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIK 749
TF E+ L+ +ADGR GTQN+ISQIR +F LEDPF+GS +Q+ AYRDLER++C ++
Sbjct: 733 TTFNAEFDSLIAAADGREGTQNIISQIRTIFSLEDPFRGSAKIQEDAYRDLERISCKDVQ 792
Query: 750 DIIPFMNEYMNLAAKTGHL 806
DIIPFMNEYM +AAKTG L
Sbjct: 793 DIIPFMNEYMRIAAKTGRL 811
>ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|gb|AEF56561.1|
polyprotein [Fig badnavirus 1]
Length = 1837
Score = 216 bits (551), Expect = 6e-54
Identities = 121/247 (48%), Positives = 151/247 (61%), Gaps = 36/247 (14%)
Frame = +3
Query: 174 DYPQLQRLSEDNIFAVG--KEDEFLTE---YPQLQRLSEQIYSQKAV-SQYRPPVDTTMN 335
DYP L+R+ N F+ G K+D +E YPQ + E++ S V S YRPP D M
Sbjct: 454 DYP-LKRIHYLNPFSEGGGKDDHLNSEEMDYPQRMKKIEKLLSTSEVTSPYRPPEDAAMG 512
Query: 336 PIGYPPTRPKPE------------------------------PSAQQQTGVILTLPMQLG 425
YPP R P PSAQQ+ G + +P QLG
Sbjct: 513 RPSYPPARTIPGGGASSSAEPPRFDAARTRFKGGYNDEMWTLPSAQQKNGAMFVIPEQLG 572
Query: 426 KIEDAFLRWEAITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNEYAELVR 605
DAF RWE++TKN VA Q FTDT+DK ++ENLLGE E+L WIQWRMT+ EY LV
Sbjct: 573 LFNDAFSRWESVTKNHVATQGFTDTRDKIKYMENLLGEIEKLIWIQWRMTYATEYEALVA 632
Query: 606 SADGRNGTQNLISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNL 785
+GR+GTQN++SQ+RRVF LEDP QGST +QD AYR+LER++C+ +K IIPF+NEYM L
Sbjct: 633 IGEGRDGTQNILSQMRRVFSLEDPAQGSTVIQDEAYRELERMSCTDVKYIIPFLNEYMRL 692
Query: 786 AAKTGHL 806
AAKTG L
Sbjct: 693 AAKTGRL 699
>emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
Length = 1847
Score = 210 bits (534), Expect = 5e-52
Identities = 109/230 (47%), Positives = 140/230 (60%), Gaps = 33/230 (14%)
Frame = +3
Query: 216 AVGKEDEFLTEYPQLQRLSEQIYSQKAVSQYRPPVDTTMNPIGYPP---------TRPKP 368
A ++E EYP+ + +E ++S+ Y PP DT M P+GYPP T +P
Sbjct: 451 AASLQEEMEMEYPRRRPQTETVFSETV--DYTPPGDTLMTPVGYPPASSSRSTVTTPSRP 508
Query: 369 E------------------------PSAQQQTGVILTLPMQLGKIEDAFLRWEAITKNVV 476
PS+Q TG + +P Q+G D F RWE+ITKN V
Sbjct: 509 PLFEGRVTHVPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESITKNYV 568
Query: 477 AMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGTQNLISQIRR 656
A Q+FTD +K +F+ENLLGE E+LTWIQWRM + EY +L+ ADGR GTQN++SQI+R
Sbjct: 569 AAQSFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKR 628
Query: 657 VFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
VF LEDP GST +QD AYRDLERLTC IKDI+ F+N+Y LAAK+G L
Sbjct: 629 VFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRL 678
>emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]
Length = 1770
Score = 209 bits (533), Expect = 7e-52
Identities = 109/230 (47%), Positives = 139/230 (60%), Gaps = 33/230 (14%)
Frame = +3
Query: 216 AVGKEDEFLTEYPQLQRLSEQIYSQKAVSQYRPPVDTTMNPIGYPP---------TRPKP 368
A ++E EYP+ + +E ++S+ Y PP DT M P+GYPP T +P
Sbjct: 374 AASLQEEMEMEYPRRRPQTETVFSETV--DYTPPGDTLMTPVGYPPASSSRSTVTTPSRP 431
Query: 369 E------------------------PSAQQQTGVILTLPMQLGKIEDAFLRWEAITKNVV 476
PS+Q TG + +P Q+G D F RWE+ITKN V
Sbjct: 432 PLFEGRVTHVPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQMGLFHDVFSRWESITKNYV 491
Query: 477 AMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGTQNLISQIRR 656
A Q FTD +K +F+ENLLGE E+LTWIQWRM + EY +L+ ADGR GTQN++SQI+R
Sbjct: 492 AAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKR 551
Query: 657 VFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
VF LEDP GST +QD AYRDLERLTC IKDI+ F+N+Y LAAK+G L
Sbjct: 552 VFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRL 601
>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
Length = 1816
Score = 208 bits (529), Expect = 2e-51
Identities = 108/230 (46%), Positives = 139/230 (60%), Gaps = 33/230 (14%)
Frame = +3
Query: 216 AVGKEDEFLTEYPQLQRLSEQIYSQKAVSQYRPPVDTTMNPIGYPP---------TRPKP 368
A ++E EYP+ + +E ++S+ Y PP DT M P+GYPP T +P
Sbjct: 450 AASLQEEMEMEYPRRRPRTETVFSETV--DYTPPGDTLMTPVGYPPASSSRSTVTTPSRP 507
Query: 369 E------------------------PSAQQQTGVILTLPMQLGKIEDAFLRWEAITKNVV 476
PS+Q TG + +P Q+G + F RWE+ITKN V
Sbjct: 508 PLFEGRVTHVPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYV 567
Query: 477 AMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGTQNLISQIRR 656
A Q FTD +K +F+ENLLGE E+LTWIQWRM + EY +L+ ADGR GTQN++SQI+R
Sbjct: 568 AAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKR 627
Query: 657 VFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
VF LEDP GST +QD AYRDLERLTC IKDI+ F+N+Y LAAK+G L
Sbjct: 628 VFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRL 677
>emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao swollen shoot virus]
Length = 1868
Score = 204 bits (520), Expect = 2e-50
Identities = 111/222 (50%), Positives = 134/222 (60%), Gaps = 35/222 (15%)
Frame = +3
Query: 246 EYPQL--QRLSEQIYSQKAVSQYRPPVDTTMNPIGYPP-----------TRPK------- 365
EYPQ Q+ +YS+ A Y PP DT M P+GYPP TRP
Sbjct: 485 EYPQRRPQQTETVVYSETA--DYTPPGDTVMTPVGYPPASSSRSTVTAPTRPPLYEGRMP 542
Query: 366 ---------------PEPSAQQQTGVILTLPMQLGKIEDAFLRWEAITKNVVAMQNFTDT 500
PS+Q TG + +P Q+G + F RWE+ITKN VA Q FTD
Sbjct: 543 HAPRFLKRDDYTEWWQLPSSQGTTGALFVMPRQVGLFHEVFSRWESITKNYVAAQGFTDP 602
Query: 501 QDKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGTQNLISQIRRVFILEDPF 680
+K +FIENLLGE E+LTWIQWRM + EY L+ ADGR GTQN++SQI+RVF LEDP
Sbjct: 603 VEKMEFIENLLGETEKLTWIQWRMNYETEYQTLLTLADGRQGTQNILSQIKRVFSLEDPA 662
Query: 681 QGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
GST +QD AYRDLERLTC+ IKDI+ F+N Y LAAK+G L
Sbjct: 663 SGSTRIQDAAYRDLERLTCNNIKDIVQFLNGYGRLAAKSGRL 704
>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|347871|gb|AAA03171.1|
polyprotein [Cacao swollen shoot virus]
Length = 1834
Score = 204 bits (518), Expect = 4e-50
Identities = 105/220 (47%), Positives = 134/220 (60%), Gaps = 33/220 (15%)
Frame = +3
Query: 246 EYPQLQRLSEQIYSQKAVSQYRPPVDTTMNPIGYPP---------TRPKPE--------- 371
EYP+ + +E +S+ Y PP DT M P+GYPP T +P
Sbjct: 456 EYPKRRPQTEMAFSETV--DYTPPGDTMMTPVGYPPASSSRSTVTTPSRPPLFEGRTTHV 513
Query: 372 ---------------PSAQQQTGVILTLPMQLGKIEDAFLRWEAITKNVVAMQNFTDTQD 506
PS+Q TG + +P Q+G + F RWE+ITKN VA Q FTD +
Sbjct: 514 PRFLKRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPTE 573
Query: 507 KADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGTQNLISQIRRVFILEDPFQG 686
K +F+ENLLGE E+LTWIQWRM + EY +L+ ADGR GTQN++SQI+R+F LEDP G
Sbjct: 574 KMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRIFSLEDPASG 633
Query: 687 STDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
ST +QD AYRDLERLTC IKDI+ F+N+Y LAAK+G L
Sbjct: 634 STRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRL 673
>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
Length = 1839
Score = 204 bits (518), Expect = 4e-50
Identities = 106/220 (48%), Positives = 134/220 (60%), Gaps = 33/220 (15%)
Frame = +3
Query: 246 EYPQLQRLSEQIYSQKAVSQYRPPVDTTMNPIGYPP---------TRPKPE--------- 371
EYP+ + +E +S+ Y PP DT M P+GYPP T +P
Sbjct: 456 EYPKRRPQTETAFSETV--DYTPPGDTMMTPVGYPPASSSRSTVTTPSRPPLFEGRTTHV 513
Query: 372 ---------------PSAQQQTGVILTLPMQLGKIEDAFLRWEAITKNVVAMQNFTDTQD 506
PS+Q TG + +P Q+G + F RWE+ITKN VA Q FTD +
Sbjct: 514 PRFLKRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKNYVAAQGFTDPTE 573
Query: 507 KADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGTQNLISQIRRVFILEDPFQG 686
K +F+ENLLGE E+LTWIQWRM + EY +L+ ADGR GTQN++SQI+RVF LEDP G
Sbjct: 574 KMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQIKRVFSLEDPASG 633
Query: 687 STDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
ST +QD AYRDLERLTC IKDI+ F+N+Y LAAK+G L
Sbjct: 634 STRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRL 673
>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
Length = 1490
Score = 203 bits (517), Expect = 5e-50
Identities = 103/219 (47%), Positives = 134/219 (61%), Gaps = 32/219 (14%)
Frame = +3
Query: 246 EYPQLQRLSEQIYSQKAVSQYRPPVDTTMNPIGYPPTR--------PKPE---------- 371
E QL+ +E++ S A+S Y PP DT M P+ YPP + P P+
Sbjct: 103 ESGQLKPKTEKVLSS-AISSYNPPRDTAMTPVAYPPAQNVASPSYNPSPQMPMFEGYYPK 161
Query: 372 --------------PSAQQQTGVILTLPMQLGKIEDAFLRWEAITKNVVAMQNFTDTQDK 509
PSAQQ TG + +P Q+G + F WEAITK VA Q TD +DK
Sbjct: 162 RPNFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQGITDPKDK 221
Query: 510 ADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGTQNLISQIRRVFILEDPFQGS 689
ADFIEN+LG E++ W QWRM + +EY LV +ADGR GTQN++SQ+RRVF LEDP GS
Sbjct: 222 ADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMRRVFSLEDPATGS 281
Query: 690 TDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
T +QD AYRDLERLTC +K I+ ++N++M +AAKTG +
Sbjct: 282 TAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRM 320
>gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]
Length = 1872
Score = 201 bits (512), Expect = 2e-49
Identities = 106/221 (47%), Positives = 136/221 (61%), Gaps = 34/221 (15%)
Frame = +3
Query: 246 EYPQLQ-RLSEQIYSQKAVSQYRPPVDTTMNPIGYPP---------TRPKPE-------- 371
EYPQ + ++E ++S+ + Y PP DT M P+GYPP T +P
Sbjct: 488 EYPQRRTEVAETVFSE--IVDYTPPGDTLMTPVGYPPASSSRSTVTTPSRPPLYEGRIPS 545
Query: 372 ----------------PSAQQQTGVILTLPMQLGKIEDAFLRWEAITKNVVAMQNFTDTQ 503
PS+Q TG + +P Q+G D F RWE+ITKN V+ Q TD
Sbjct: 546 ASRVLRRDDYTEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESITKNYVSAQGITDPT 605
Query: 504 DKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGTQNLISQIRRVFILEDPFQ 683
+K +FIENLLGE E+LTWIQWRM + EY +L+ A+GR GTQN++SQI+RVF LEDP
Sbjct: 606 EKMEFIENLLGETEKLTWIQWRMRYEAEYQQLLTLAEGRQGTQNILSQIKRVFSLEDPAS 665
Query: 684 GSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
GST +QD AYRDLERLTC IKDI+ F+N+Y LAAK+G L
Sbjct: 666 GSTRIQDSAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRL 706
>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
Length = 1979
Score = 201 bits (511), Expect = 3e-49
Identities = 105/239 (43%), Positives = 138/239 (57%), Gaps = 44/239 (18%)
Frame = +3
Query: 222 GKEDEFLTEYPQLQRL------------SEQIYSQKAVSQYRPPVDTTMNPIGYPPTR-- 359
G + E +YP +L +E++ S A+S Y PP DT M P+ YPP +
Sbjct: 567 GPKQEAEFDYPAFAKLQDHEKCSRPKPKTEKVLSS-AISSYTPPSDTAMTPVAYPPAQNI 625
Query: 360 ------PKPE------------------------PSAQQQTGVILTLPMQLGKIEDAFLR 449
P P+ PSAQQ TG + +P Q+G + F
Sbjct: 626 ASPSYNPSPQIPMFEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTS 685
Query: 450 WEAITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGT 629
WEAITK VA Q TD +DKADFIEN+LG E++ W QWRM + +EY LV +ADGR GT
Sbjct: 686 WEAITKAYVAQQGITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGT 745
Query: 630 QNLISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
QN++SQ+RRVF LEDP GST +QD AYRDLERLTC +K I+ ++N++M +AAKTG +
Sbjct: 746 QNILSQMRRVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRM 804
>ref|YP_002916056.1| polyprotein [Sweetpotato badnavirus B] gi|237846579|gb|ACN56750.1|
polyprotein [Sweetpotato badnavirus B]
Length = 1170
Score = 201 bits (510), Expect = 3e-49
Identities = 99/199 (49%), Positives = 124/199 (62%), Gaps = 26/199 (13%)
Frame = +3
Query: 288 QKAVSQYRPPVDTTMNPIGYPPTRPKPE--------------------------PSAQQQ 389
Q A S YRPP DTTM Y P RP E P AQQQ
Sbjct: 570 QSAQSPYRPPEDTTMGQPSYAPARPTVETVSGPPSFRTDSRFLKRGTNNENWSLPPAQQQ 629
Query: 390 TGVILTLPMQLGKIEDAFLRWEAITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWR 569
GV+LTLP Q+G + D F+RWE T N +++ N DTQ+K D++ENLLGE +L WIQWR
Sbjct: 630 GGVLLTLPEQMGLLNDVFMRWETTTLNHMSLMNIQDTQEKVDYMENLLGETAKLAWIQWR 689
Query: 570 MTFPNEYAELVRSADGRNGTQNLISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIK 749
+ +EY +V A+GR GTQN+ISQ+RR+ L DP QGST +QD+AYRDLERL C +K
Sbjct: 690 TVYEDEYKAIVAQAEGRMGTQNVISQVRRILTLSDPVQGSTAIQDQAYRDLERLQCHDVK 749
Query: 750 DIIPFMNEYMNLAAKTGHL 806
D++ F+N+YM LA KTG L
Sbjct: 750 DMVKFLNDYMRLATKTGRL 768
>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
Length = 1976
Score = 200 bits (509), Expect = 4e-49
Identities = 105/239 (43%), Positives = 138/239 (57%), Gaps = 44/239 (18%)
Frame = +3
Query: 222 GKEDEFLTEYPQLQRL------------SEQIYSQKAVSQYRPPVDTTMNPIGYPPTR-- 359
G + E +YP +L +E++ S A+S Y PP DT M P+ YPP +
Sbjct: 567 GPKQEAEFDYPAFAKLQDHEKCSRPKPKTEKVLSS-AISSYTPPSDTAMTPVAYPPAQNI 625
Query: 360 ------PKPE------------------------PSAQQQTGVILTLPMQLGKIEDAFLR 449
P P+ PSAQQ TG + +P Q+G + F
Sbjct: 626 ASPSYNPSPQVPMFEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLSHEVFTS 685
Query: 450 WEAITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGT 629
WEAITK VA Q TD +DKADFIEN+LG E++ W QWRM + +EY LV +ADGR GT
Sbjct: 686 WEAITKAYVAQQGITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGT 745
Query: 630 QNLISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
QN++SQ+RRVF LEDP GST +QD AYRDLERLTC +K I+ ++N++M +AAKTG +
Sbjct: 746 QNILSQMRRVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRM 804
>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
yellow mosaic virus]
Length = 1983
Score = 200 bits (509), Expect = 4e-49
Identities = 106/237 (44%), Positives = 138/237 (58%), Gaps = 44/237 (18%)
Frame = +3
Query: 228 EDEFLTEYPQLQRL------------SEQIYSQKAVSQYRPPVDTTMNPIGYPPTR---- 359
E EF +YP RL +E++ S A+S Y PP DT M P+ YPP +
Sbjct: 579 EAEF--DYPAFARLQAHEESGRPKPKTEKVLSS-AISSYTPPTDTAMTPVAYPPAQNIAS 635
Query: 360 ----PKPE------------------------PSAQQQTGVILTLPMQLGKIEDAFLRWE 455
P P+ PSAQQ TG + +P Q+G + F WE
Sbjct: 636 PSYNPSPQMPMFEGYYPKRPNFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSWE 695
Query: 456 AITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADGRNGTQN 635
AITK VA Q TD +DKA+FIEN+LG E++ W QWRM + +EY LV +ADGR GTQN
Sbjct: 696 AITKAYVAQQGITDPRDKAEFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQN 755
Query: 636 LISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKTGHL 806
++SQ+RRVF LEDP GST +QD AYRDLERLTC +K I+ ++N++M +AAKTG +
Sbjct: 756 ILSQMRRVFSLEDPTTGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRM 812
>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
Length = 1967
Score = 200 bits (508), Expect = 6e-49
Identities = 107/241 (44%), Positives = 138/241 (57%), Gaps = 32/241 (13%)
Frame = +3
Query: 174 DYPQLQRLSEDNIFAVGKEDEFLTEYPQLQRLSEQIYSQKAVSQYRPPVDTTMNPIGYPP 353
DYP RL + E +L+ +E++ S A+S Y PP DT M P+ YPP
Sbjct: 567 DYPAFARLQDHE------------ESGRLKPKTEKVLSS-AISSYTPPRDTAMTPVAYPP 613
Query: 354 TR--------------------PKPE------------PSAQQQTGVILTLPMQLGKIED 437
+ PK PSAQQ TG + +P Q+G +
Sbjct: 614 AQNVASPSYNLSPQMPMFEGYSPKRPNFKRDNHTFISLPSAQQNTGALFIMPQQIGLFHE 673
Query: 438 AFLRWEAITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADG 617
F WEAITK VA Q TD +DKADFIEN+LG E++ W QWRM + +EY LV +ADG
Sbjct: 674 VFTSWEAITKAYVAQQGITDPKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADG 733
Query: 618 RNGTQNLISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKT 797
R GTQN++SQ+RRVF LEDP GST +QD AYRDLERLTC +K I+ ++N++M +AAKT
Sbjct: 734 REGTQNILSQMRRVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKT 793
Query: 798 G 800
G
Sbjct: 794 G 794
>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
Length = 1968
Score = 199 bits (506), Expect = 1e-48
Identities = 106/243 (43%), Positives = 137/243 (56%), Gaps = 32/243 (13%)
Frame = +3
Query: 174 DYPQLQRLSEDNIFAVGKEDEFLTEYPQLQRLSEQIYSQKAVSQYRPPVDTTMNPIGYPP 353
DYP RL E Q + +E++ S A+S Y PP DT M P+ YPP
Sbjct: 568 DYPAFARLQAHE------------ESGQPKPKTEKVLSS-AISSYTPPRDTAMTPVAYPP 614
Query: 354 TR--------PKPE------------------------PSAQQQTGVILTLPMQLGKIED 437
+ P P+ PSA Q TG + +P Q+G +
Sbjct: 615 AQNVAGPSYNPSPQMPMFEGYYPKRPNFKRDNHAFISLPSAHQSTGALFLMPQQIGLFHE 674
Query: 438 AFLRWEAITKNVVAMQNFTDTQDKADFIENLLGEAERLTWIQWRMTFPNEYAELVRSADG 617
F WEAITK VA Q TD +DKADFIEN+LG E++ W QWRM + +EY LV +ADG
Sbjct: 675 VFTSWEAITKAYVAQQGITDPKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADG 734
Query: 618 RNGTQNLISQIRRVFILEDPFQGSTDMQDRAYRDLERLTCSQIKDIIPFMNEYMNLAAKT 797
R GTQN++SQ+RRVF LEDP GST +QD AYRDLERLTC +K I+ ++N++M +AAKT
Sbjct: 735 REGTQNILSQMRRVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKT 794
Query: 798 GHL 806
G +
Sbjct: 795 GRM 797