BLASTX nr result
ID: Zingiber25_contig00009982
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00009982
(3294 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 917 0.0
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 915 0.0
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 886 0.0
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 884 0.0
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 852 0.0
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 852 0.0
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 845 0.0
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 834 0.0
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 803 0.0
gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japo... 800 0.0
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 799 0.0
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 795 0.0
ref|XP_006645606.1| PREDICTED: probable RNA-dependent RNA polyme... 788 0.0
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 785 0.0
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 784 0.0
ref|XP_006645607.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA... 783 0.0
sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 783 0.0
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 780 0.0
sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 778 0.0
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 778 0.0
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 917 bits (2370), Expect = 0.0
Identities = 503/977 (51%), Positives = 649/977 (66%), Gaps = 3/977 (0%)
Frame = -1
Query: 3207 VWLPRSVEELLHRICVEQSLLQPDPXXXXXXXXXXXXXXXDVLMQMSGRRIRNFSGFILY 3028
V LP SVE++L RIC EQ P+ ++L ++S +IRN S I Y
Sbjct: 3 VSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKIRNLSALINY 62
Query: 3027 MANNFRPIPTQESFADTLPSGSSSPLRSCGVCSEESLQSDPRYVAPSSSGQSISPQLIAL 2848
M A + S SP + + L S P + Q+ SPQL+AL
Sbjct: 63 MVGK----------AAQGDAASHSP-------TPKHLISSPSSTPKKARRQASSPQLVAL 105
Query: 2847 GQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFESVVWEELRSKCIPLLXXXX 2668
G+LEFRKAFLILSY+G + E+ +S E I +++ L M FE+ VW L K I
Sbjct: 106 GELEFRKAFLILSYIGDKRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQR 165
Query: 2667 XXXXXXXKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQRVLGDDNVLLVKFAEEMNIGKGS 2488
K HIYHCHV +G FKGPYL RTH+QRVLGD+N+LLVKFAE++
Sbjct: 166 SFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSL 225
Query: 2487 HAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXXXXXXSPVKCYFVRMESNWIAD 2308
+ + Y+K+A+EGI VGLR+Y+FFV+KDGG S VKCYFV MES+
Sbjct: 226 NCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSSVKCYFVFMESS---- 281
Query: 2307 QEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLILSKTMKLDIDLASVHVEMIDDI 2128
LS K +HE+R +FMH H VSS++KYMARFSLILSKT+KLD+DL++V+++ IDD
Sbjct: 282 -----ALSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDE 336
Query: 2127 VCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHIFKGKCLTPMSNQFLDGSEIAE 1948
D+DG++ YDE+ +PLI TDGTGFISED+AL+CP+++ +GK M+N D
Sbjct: 337 PGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKY---MNNGNSD------ 387
Query: 1947 EPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLPPRTIQVRPSMRKVKSDASFSY 1768
PLLIQ RLFN G A KGTLLLN+ LPPRTIQ+RPSM KV++D S
Sbjct: 388 -------------PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSD 434
Query: 1767 IQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFLELLKNALDDAQNARYTKLAA 1588
Q+ NS+EI TSN+P+R+ LS+YLIALL YGGVPNEYF+ LLK+AL+DA + + +K AA
Sbjct: 435 TQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAA 494
Query: 1587 IRVSLKYGDMDDFLVSRMILCGIPLEEPYMQFRLSVLMKEERKGLKAGKLPVTDCYYLMG 1408
+RVSL++G+MDD +V+RMIL GIP++EP++ LS ++ EERKGL+ GKLPV DC+YLMG
Sbjct: 495 LRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMG 554
Query: 1407 TVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIHVLSARYIKELELFVGDSKYA 1228
T DPTG LK +EVC++L++GQ+ G VLVYKHPGLHFGDIHVL+A Y++ LE FVG++KYA
Sbjct: 555 TADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYA 614
Query: 1227 IFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSSKPWVPMSSTAGVQQKGPLDL 1048
IFFP KG RSLADEMANSDFDGDMYWVSRN QLL+YFR+S+PW+ ST V K P D
Sbjct: 615 IFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDF 674
Query: 1047 TDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLLTLSDDCAXXXXXXXXXXXXLV 868
+ ELE +LF FL RF+ S I +AAD WL +MDRLLTL DDC+ L
Sbjct: 675 SPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELT 734
Query: 867 DIYYDAVDAPKSGLKVDVPPELKADKYPHYMEKLKSDSYTSTSILGLIFNKAGSVQTEDN 688
DIYYDA+DAPKSG+KV+V ELKA+K+PH+M + SY STSILG I++ S Q E+
Sbjct: 735 DIYYDALDAPKSGMKVNVSKELKAEKFPHFMG--RESSYHSTSILGQIYDAVESFQPENQ 792
Query: 687 QFNGISKLSCFS--RYSESGLSLWKPRYTNYLSEMAQALEHEIEEFKEEMADDIIKKYKW 514
I +L F+ ++ L WK RY Y SEMA AL+H E K+E A ++I KYK
Sbjct: 793 STKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHG-GETKDEYAAEVINKYKQ 851
Query: 513 MLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYAQMGG-VGRCSFAWNVAGRALCMLHASK 337
+LY AAEFE+SPR +DIF+EALAIY++ Y++ G V C+F W VAGRALC L+ K
Sbjct: 852 ILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVK 911
Query: 336 QDDKSLIPCSRSVLTEI 286
+KS++ C SVL ++
Sbjct: 912 LGEKSMV-CVPSVLRQV 927
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 915 bits (2365), Expect = 0.0
Identities = 502/985 (50%), Positives = 650/985 (65%), Gaps = 11/985 (1%)
Frame = -1
Query: 3207 VWLPRSVEELLHRICVEQSLLQPDPXXXXXXXXXXXXXXXDVLMQMSGRRIRNFSGFILY 3028
V LP SVE++L RIC EQ P+ ++L ++S +IRN S I Y
Sbjct: 3 VSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKISHLKIRNLSALINY 62
Query: 3027 MANNFRPIPTQESFADTLPSGSSSPLRSCGVCSEESLQSDPRYVAPSSSGQSISPQLIAL 2848
M A + S SP + + L S P + Q+ SPQL+AL
Sbjct: 63 MVGK----------AAQGDAASHSP-------TPKHLISSPSSTPKKARRQASSPQLVAL 105
Query: 2847 GQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFESVVWEELRSKCIPLLXXXX 2668
G+LEFRKAFLILSY+G + E+ +S E I +++ L M FE+ VW L K I
Sbjct: 106 GELEFRKAFLILSYIGELRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQR 165
Query: 2667 XXXXXXXKAHIYHCHVDLEGHLIFK--------GPYLQLQRTHMQRVLGDDNVLLVKFAE 2512
K HIYHCHV +G FK GPYL RTH+QRVLGD+N+LLVKFAE
Sbjct: 166 SFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENILLVKFAE 225
Query: 2511 EMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXXXXXXSPVKCYFVR 2332
++ + + Y+K+A+EGI VGLR+Y+FFV+KDGG S VKCYFV
Sbjct: 226 DVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSSVKCYFVF 285
Query: 2331 MESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLILSKTMKLDIDLASV 2152
MES+ LS K +HE+R +FMH H VSS++KYMARFSLILSKT+KLD+DL++V
Sbjct: 286 MESS---------ALSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTV 336
Query: 2151 HVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHIFKGKCLTPMSNQF 1972
+++ IDD D+DG++ YDE+ +PLI TDGTGFISED+AL+CP+++ +GK + ++
Sbjct: 337 NIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDV 396
Query: 1971 LDGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLPPRTIQVRPSMRKV 1792
D S PLLIQ RLFN G A KGTLLLN+ LPPRTIQ+RPSM KV
Sbjct: 397 CD----------------SRYPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKV 440
Query: 1791 KSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFLELLKNALDDAQN 1612
++D S Q+ NS+EI TSN+P+R+ LS+YLIALL YGGVPNEYF+ LLK+AL+DA +
Sbjct: 441 ETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPS 500
Query: 1611 ARYTKLAAIRVSLKYGDMDDFLVSRMILCGIPLEEPYMQFRLSVLMKEERKGLKAGKLPV 1432
+ +K AA+RVSL++G+MDD +V+RMIL GIP++EP++ LS ++ EERKGL+ GKLPV
Sbjct: 501 VQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPV 560
Query: 1431 TDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIHVLSARYIKELEL 1252
DC+YLMGT DPTG LK +EVC++L++GQ+ G VLVYKHPGLHFGDIHVL+A Y++ LE
Sbjct: 561 NDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEE 620
Query: 1251 FVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSSKPWVPMSSTAGV 1072
FVG++KYAIFFP KG RSLADEMANSDFDGDMYWVSRN QLL+YFR+S+PW+ ST V
Sbjct: 621 FVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHV 680
Query: 1071 QQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLLTLSDDCAXXXXXX 892
K P D + ELE +LF FL RF+ S I +AAD WL +MDRLLTL DDC+
Sbjct: 681 PSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECL 740
Query: 891 XXXXXXLVDIYYDAVDAPKSGLKVDVPPELKADKYPHYMEKLKSDSYTSTSILGLIFNKA 712
L DIYYDA+DAPKSG+KV+V ELKA+K+PH+M + SY STSILG I++
Sbjct: 741 KRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMG--RESSYHSTSILGQIYDAV 798
Query: 711 GSVQTEDNQFNGISKLSCFS--RYSESGLSLWKPRYTNYLSEMAQALEHEIEEFKEEMAD 538
S Q E+ I +L F+ ++ L WK RY Y SEMA AL+H E K+E A
Sbjct: 799 ESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHG-GETKDEYAA 857
Query: 537 DIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYAQMGG-VGRCSFAWNVAGRA 361
++I KYK +LY AAEFE+SPR +DIF+EALAIY++ Y++ G V C+F W VAGRA
Sbjct: 858 EVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRA 917
Query: 360 LCMLHASKQDDKSLIPCSRSVLTEI 286
LC L+ K +KS++ C SVL ++
Sbjct: 918 LCKLYTVKLGEKSMV-CVPSVLRQV 941
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 886 bits (2289), Expect = 0.0
Identities = 503/1007 (49%), Positives = 659/1007 (65%), Gaps = 31/1007 (3%)
Frame = -1
Query: 3207 VWLPRSVEELLHRICVEQSLLQPDPXXXXXXXXXXXXXXXDVLMQMSGRRIR-NFSGFIL 3031
V LP SVE+L+ +I EQ+ L PD DVL ++ +I+ +FSG+I
Sbjct: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72
Query: 3030 YMA----NNFRPI---------PTQESFADT--------LPSGSSSPLRSCGVCSEESLQ 2914
Y+ NN P+ P Q T LP G+ ++ V ++
Sbjct: 73 YLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQPRG 132
Query: 2913 SDPRYVAPSSSGQSISPQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMD 2734
S ++ + ++ PQ +ALG+LEFRKAFLILSY+G LEE I+ + I+ ++ L M
Sbjct: 133 SPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMA 192
Query: 2733 QFESVVWEELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQR 2554
+FES VWE+L K I K H+YHCH+ +G+ FKGPYL RTH+QR
Sbjct: 193 RFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQR 252
Query: 2553 VLGDDNVLLVKFAEEMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXX 2374
LGDDN+LLVKF EE+ + S+ + S Y+++A+EGILVGLR Y FFV+KDGG
Sbjct: 253 ELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEK 312
Query: 2373 XXXXXS-PVKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSL 2197
+ PVKCYFVRMES+ D YILS K +HE+R +FMHV TVSS++ YM+R SL
Sbjct: 313 KKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSL 372
Query: 2196 ILSKTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPH 2017
ILSKTMKL++D + +++E I+D C D DGN+ Y ++GE LIHTDGTGFISED+ALKCP
Sbjct: 373 ILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPT 431
Query: 2016 HIFKGKCLTPMSNQ-FLDGSEIAEEPLNI--TKSLTSEAPLLIQFRLFNKGAAFKGTLLL 1846
+++K KC S + +D E+ ++ T+S E PLL+Q RLF G A KGTLLL
Sbjct: 432 YVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLL 491
Query: 1845 NKLLPPRTIQVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGV 1666
NK LPP+TIQ+RPSM KVK+D S Q+ NSLE+V TSN+P++T LSR LIALL YGGV
Sbjct: 492 NKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGV 551
Query: 1665 PNEYFLELLKNALDDAQNARYTKLAAIRVSLKYGDMD-DFLVSRMILCGIPLEEPYMQFR 1489
P +FL++L+NALDDA+ K A++VS YG MD DF +RMIL GI L+EPY+Q R
Sbjct: 552 PEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHR 611
Query: 1488 LSVLMKEERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGD-VLVYKHP 1312
LS+LMKEE+K L+AGKLPVT+ YYLMGTVDPTG+LK NEVC++L++GQ+S + VLVY++P
Sbjct: 612 LSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNP 671
Query: 1311 GLHFGDIHVLSARYIKELELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQ 1132
GLHFGDIHVL A Y+KELE FVG SKYAIFFP G RSLADE+A DFDGDMY+VSRN +
Sbjct: 672 GLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPE 731
Query: 1131 LLRYFRSSKPWVPMSSTAGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWL 952
LL++F+ S+ W+ S K P+D + ELE +LF FL RF PS S+AADCW
Sbjct: 732 LLKHFKESERWMSTSKNLSA-NKRPIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQ 790
Query: 951 SYMDRLLTLSDDCAXXXXXXXXXXXXLVDIYYDAVDAP-KSGLKVDVPPELKADKYPHYM 775
+ MDR LTL D+ A L++IYYDA+DAP KSG+KV+VP +LK +K+P YM
Sbjct: 791 AVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYM 850
Query: 774 EKLKSDSYTSTSILGLIFNKAGSVQTEDNQFNGISKLSCF-SRYSESGLSLWKPRYTNYL 598
+ +S S+ STS+LG I+N S + D I KL CF E+ ++ WK Y Y
Sbjct: 851 RRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYR 910
Query: 597 SEMAQALEHEIEEFKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDY 418
EM +A++ E +EE A+ +I+KYK +LY AAEFE S R ++I+ EALAIYN+ YD
Sbjct: 911 WEMKEAIDKCTVE-REEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDL 969
Query: 417 -AQMGGVGRCSFAWNVAGRALCMLHASKQDDKSLIPCSRSVLTEILG 280
A V CSFAW VAG AL +A +Q D+S++ CS SVL EI G
Sbjct: 970 AASRRQVSYCSFAWRVAGSALRKFYARRQGDRSML-CSASVLREICG 1015
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 884 bits (2284), Expect = 0.0
Identities = 501/1006 (49%), Positives = 660/1006 (65%), Gaps = 30/1006 (2%)
Frame = -1
Query: 3207 VWLPRSVEELLHRICVEQSLLQPDPXXXXXXXXXXXXXXXDVLMQMSGRRIR-NFSGFIL 3031
V LP SVE+L+ +I EQ+ L PD DVL ++ +I+ +FSG+I
Sbjct: 13 VSLPLSVEQLISKIYTEQNKLPPDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYIN 72
Query: 3030 YMA----NNFRPIPTQESFADTLPSGSSSPL----------------RSCGVCSEESLQS 2911
Y+ NN P+ + F+ + P + SP+ + V ++ S
Sbjct: 73 YLVKKRNNNGSPLK-RVCFSPSSPQQNRSPVTVTTVRLLNLPQDYVVKQSPVADQQPRGS 131
Query: 2910 DPRYVAPSSSGQSISPQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQ 2731
++ + ++ PQ +ALG+LEFRKAFLILSY+G LEE I+ + I+ ++ L M +
Sbjct: 132 PMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMAR 191
Query: 2730 FESVVWEELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQRV 2551
FES VWE+L K I K H+YHCH+ +G+ FKGPYL RTH+QR
Sbjct: 192 FESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRE 251
Query: 2550 LGDDNVLLVKFAEEMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXX 2371
LGDDN+LLVKF EE+ + S+ + S Y+++A+EGILVGLR Y FFV+KDGG
Sbjct: 252 LGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKK 311
Query: 2370 XXXXS-PVKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLI 2194
+ PVKCYFVRMES+ D YILS K +HE+R +FMHV TVSS++ YM+R SLI
Sbjct: 312 KDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLI 371
Query: 2193 LSKTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHH 2014
LSKTMKL++D + +++E I+D C D DGN+ Y ++GE LIHTDGTGFISED+ALKCP +
Sbjct: 372 LSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLALKCPTY 430
Query: 2013 IFKGKCLTPMSNQ-FLDGSEIAEEPLNI--TKSLTSEAPLLIQFRLFNKGAAFKGTLLLN 1843
++K KC S + +D E+ ++ T+S E PLL+Q RLF G A KGTLLLN
Sbjct: 431 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 490
Query: 1842 KLLPPRTIQVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVP 1663
K LPP+TIQ+RPSM KVK+D S Q+ NSLE+V TSN+P++T LSR LIALL YGGVP
Sbjct: 491 KKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVP 550
Query: 1662 NEYFLELLKNALDDAQNARYTKLAAIRVSLKYGDMD-DFLVSRMILCGIPLEEPYMQFRL 1486
+FL++L+NALDDA+ K A++VS YG MD DF +RMIL GI L+EPY+Q RL
Sbjct: 551 EIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRL 610
Query: 1485 SVLMKEERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGD-VLVYKHPG 1309
S+LMKEE+K L+AGKLPVT+ YYLMGTVDPTG+LK NEVC++L++GQ+S + VLVY++PG
Sbjct: 611 SILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPG 670
Query: 1308 LHFGDIHVLSARYIKELELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQL 1129
LHFGDIHVL A Y+KELE FVG SKYAIFFP G RSLADE+A DFDGDMY+VSRN +L
Sbjct: 671 LHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMYFVSRNPEL 730
Query: 1128 LRYFRSSKPWVPMSSTAGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLS 949
L++F+ S+ W+ S K P+D + ELE +LF FL RF PS S+AADCW +
Sbjct: 731 LKHFKESERWMSTSKNLSA-NKRPIDFSLEELESELFKLFLNTRFCPSNAKSLAADCWQA 789
Query: 948 YMDRLLTLSDDCAXXXXXXXXXXXXLVDIYYDAVDAP-KSGLKVDVPPELKADKYPHYME 772
MDR LTL D+ A L++IYYDA+DAP KSG+KV+VP +LK +K+P YM
Sbjct: 790 VMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLKVEKFPCYMR 849
Query: 771 KLKSDSYTSTSILGLIFNKAGSVQTEDNQFNGISKLSCF-SRYSESGLSLWKPRYTNYLS 595
+ +S S+ STS+LG I+N S + D I KL CF E+ ++ WK Y Y
Sbjct: 850 RDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKWKGYYDQYRW 909
Query: 594 EMAQALEHEIEEFKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDY- 418
EM +A++ E +EE A+ +I+KYK +LY AAEFE S R ++I+ EALAIYN+ YD
Sbjct: 910 EMKEAIDKCTVE-REEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLA 968
Query: 417 AQMGGVGRCSFAWNVAGRALCMLHASKQDDKSLIPCSRSVLTEILG 280
A V CSFAW VAG AL +A +Q D+S++ CS SVL EI G
Sbjct: 969 ASRRQVSYCSFAWRVAGSALRKFYARRQGDRSML-CSASVLREICG 1013
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 852 bits (2202), Expect = 0.0
Identities = 471/904 (52%), Positives = 607/904 (67%), Gaps = 8/904 (0%)
Frame = -1
Query: 2970 SGSSSPLRSCGVCSEESLQSDPRYVAPSSSGQSISPQLIALGQLEFRKAFLILSYLGRYK 2791
SG+ SP+ S + ++ S + S++ Q L+ALG+LEFRKAFLILSYLG
Sbjct: 7 SGAQSPI-SLKLEGSSTMDSQRQRGNESTTSQ----HLVALGELEFRKAFLILSYLGGKN 61
Query: 2790 LEETISVEFIKQIQWLNMDQFESVVWEEL--RSKCIPLLXXXXXXXXXXXKAHIYHCHVD 2617
LEE +SV+ I+ + L M FES +WE R I K HIYHCHVD
Sbjct: 62 LEEVVSVDQIRGYKDLPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVD 121
Query: 2616 LEGHLIFKGPYLQLQRTHMQRVLGDDNVLLVKFAE-EMNIGKGSHAFQGYESIYHKVAQE 2440
+G FKGPYL R +QR LGDDN+L+VKF E + + GS + Y S Y+KV E
Sbjct: 122 PDGSYRFKGPYLSKLRNVLQRTLGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGE 181
Query: 2439 GILVGLRRYQFFVYKDGGXXXXXXXXXS-PVKCYFVRMESNWIADQEKPYILSDKFIHES 2263
GI VGLR Y+FFV+KDGG + PVKC+FVRMES D + ILS K I ++
Sbjct: 182 GIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVRMESVASIDNQDN-ILSGKTIRQA 240
Query: 2262 RAVFMHVHTVSSLSKYMARFSLILSKTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENG 2083
R+VFMHV +SSLS YMARFSLILSKTM L++DL+ V ++ I D C D DGN+ Y +G
Sbjct: 241 RSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDG 300
Query: 2082 EPLIHTDGTGFISEDIALKCPHHIFKGKCLTPMSNQFLD-GSEIAEEPLNITKSLTSEAP 1906
+PLIHTDGTGFIS D+ALKCP + FKG CL + + L+ +E+ E+ + + P
Sbjct: 301 KPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVMEQ---YPECRNGDPP 357
Query: 1905 LLIQFRLFNKGAAFKGTLLLNKLLPPRTIQVRPSMRKVKSDASFSYIQSCNSLEIVATSN 1726
LLIQFRLFN G A KGT L+NK L +T+ +RPSM KV++D S S NSLEIV TS+
Sbjct: 358 LLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSS 417
Query: 1725 RPKRTCLSRYLIALLHYGGVPNEYFLELLKNALDDAQNARYTKLAAIRVSLKYGDMDDFL 1546
RPK+T LS+ LIALL YGGVP E+F+ ++ NAL+DA K AA+RV+L YGDMDD +
Sbjct: 418 RPKKTFLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNI 477
Query: 1545 VSRMILCGIPLEEPYMQFRLSVLMKEERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVC 1366
V+ MI CGIPLEEPY+Q RLS+LMKEE+K LK GK+PV + YYLMGT DPTGLL+ +EVC
Sbjct: 478 VATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVC 537
Query: 1365 VVLENGQISGDVLVYKHPGLHFGDIHVLSARYIKELELFVGDSKYAIFFPTKGSRSLADE 1186
++L+ GQISG+VL+Y++PGLHFGDIH+L A Y++ELE FVG++KYAIFFP KG RSLADE
Sbjct: 538 IILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADE 597
Query: 1185 MANSDFDGDMYWVSRNSQLLRYFRSSKPWVPMSSTAGVQQKGPLDLTDRELEKKLFDQFL 1006
M+ DFDGDM++VSRN QLL F+ ++PW P +ST V + P + +D ELE +LF FL
Sbjct: 598 MSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFL 657
Query: 1005 ANRFKPSYTISVAADCWLSYMDRLLTLSDDCAXXXXXXXXXXXXLVDIYYDAVDAP-KSG 829
NRF+PS T+ VAAD WL+ MDRLLTL +DCA L+DIYYDA+DAP K G
Sbjct: 658 RNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGG 717
Query: 828 LKVDVPPELKADKYPHYMEKLKSDSYTSTSILGLIFNKAGSVQTEDNQFNGISKLSCF-S 652
+++VP LKA+ +PH+M K + +Y STSILG I++K + + D N + KL CF
Sbjct: 718 RRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDD 777
Query: 651 RYSESGLSLWKPRYTNYLSEMAQALEHEIEEFKEEMADDIIKKYKWMLYEAAEFEDSPRK 472
E L WK Y Y EM AL + E + A+++I+KYK LYEAAEF S R+
Sbjct: 778 EVHELYLVKWKELYGQYRKEMRNAL--KAGEESNDKANEVIRKYKEFLYEAAEFNLSKRR 835
Query: 471 RDDIFEEALAIYNLAYDYAQ-MGGVGRCSFAWNVAGRALCMLHASKQDDKSLIPCSRSVL 295
++IFEEA+A+Y ++Y++A+ G VG CSFAW VAG ALC L+ K + + CS S L
Sbjct: 836 DEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGERPMICSPSAL 895
Query: 294 TEIL 283
IL
Sbjct: 896 KGIL 899
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 852 bits (2201), Expect = 0.0
Identities = 464/870 (53%), Positives = 592/870 (68%), Gaps = 8/870 (0%)
Frame = -1
Query: 2868 SPQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFESVVWEEL--RSK 2695
S L+ALG+LEFRKAFLILSYLG LEE +SV+ I+ + L M FES +WE R
Sbjct: 14 SQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPMRTFESKIWEAFGCRRD 73
Query: 2694 CIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQRVLGDDNVLLVKFA 2515
I K HIYHCHVD +G FKGPYL R +QR LGDDN+L+VKF
Sbjct: 74 YIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGDDNILMVKFG 133
Query: 2514 E-EMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXXXXXXS-PVKCY 2341
E + + GS + Y S Y+KV EGI VGLR Y+FFV+KDGG + PVKC+
Sbjct: 134 EVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCF 193
Query: 2340 FVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLILSKTMKLDIDL 2161
FVRMES D + ILS K I ++R+VFMHV +SSLS YMARFSLILSKTM L++DL
Sbjct: 194 FVRMESVASIDNQDN-ILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDL 252
Query: 2160 ASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHIFKGKCLTPMS 1981
+ V ++ I D C D DGN+ Y +G+PLIHTDGTGFIS D+ALKCP + FKG CL +
Sbjct: 253 SCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASN 312
Query: 1980 NQFLD-GSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLPPRTIQVRPS 1804
+ L+ +E+ E+ + + PLLIQFRLFN G A KGT L+NK L +T+ +RPS
Sbjct: 313 IERLNVHNEVMEQ---YPECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPS 369
Query: 1803 MRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFLELLKNALD 1624
M KV++D S S NSLEIV TS+RPK+T LS+ LIALL YGGVP E+F+ ++ NAL+
Sbjct: 370 MIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVPEEFFMGIVNNALE 429
Query: 1623 DAQNARYTKLAAIRVSLKYGDMDDFLVSRMILCGIPLEEPYMQFRLSVLMKEERKGLKAG 1444
DA K AA+RV+L YGDMDD +V+ MI CGIPLEEPY+Q RLS+LMKEE+K LK G
Sbjct: 430 DAHGILSNKNAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGG 489
Query: 1443 KLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIHVLSARYIK 1264
K+PV + YYLMGT DPTGLL+ +EVC++L+ GQISG+VL+Y++PGLHFGDIH+L A Y++
Sbjct: 490 KIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVR 549
Query: 1263 ELELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSSKPWVPMSS 1084
ELE FVG++KYAIFFP KG RSLADEM+ DFDGDM++VSRN QLL F+ ++PW P +S
Sbjct: 550 ELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTS 609
Query: 1083 TAGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLLTLSDDCAXX 904
T V + P + +D ELE +LF FL NRF+PS T+ VAAD WL+ MDRLLTL +DCA
Sbjct: 610 TPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEE 669
Query: 903 XXXXXXXXXXLVDIYYDAVDAP-KSGLKVDVPPELKADKYPHYMEKLKSDSYTSTSILGL 727
L+DIYYDA+DAP K G +++VP LKA+ +PH+M K + +Y STSILG
Sbjct: 670 IVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGK 729
Query: 726 IFNKAGSVQTEDNQFNGISKLSCF-SRYSESGLSLWKPRYTNYLSEMAQALEHEIEEFKE 550
I++K + + D N + KL CF E L WK Y Y EM AL + E
Sbjct: 730 IYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNAL--KAGEESN 787
Query: 549 EMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYAQ-MGGVGRCSFAWNV 373
+ A+++I+KYK LYEAAEF S R+ ++IFEEA+A+Y ++Y++A+ G VG CSFAW V
Sbjct: 788 DKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRV 847
Query: 372 AGRALCMLHASKQDDKSLIPCSRSVLTEIL 283
AG ALC L+ K + + CS S L IL
Sbjct: 848 AGLALCTLYVLKNQGERPMICSPSALKGIL 877
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 845 bits (2183), Expect = 0.0
Identities = 476/986 (48%), Positives = 634/986 (64%), Gaps = 11/986 (1%)
Frame = -1
Query: 3207 VWLPRSVEELLHRICVEQSLLQPDPXXXXXXXXXXXXXXXDVLMQMSGRRIRNFSGFILY 3028
V LP +VE L +IC QS+ ++L +S ++IR+FS FI+Y
Sbjct: 22 VLLPHAVEAKLGQICRYQSVQPASMRAREMLASIGESSAMNLLNWISTQKIRDFSAFIIY 81
Query: 3027 MANNFRPIPTQESFADTLPSGSSSPLRSCGVCSEESLQSDPRYVAPSSSGQSISPQLIAL 2848
M N P S D + + + SL +D R ++ G + AL
Sbjct: 82 MVKNMNRPPDVLSSTDDVCECAPN-------LEPSSLMNDFRC---NTYGSNEFQFRKAL 131
Query: 2847 GQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFESVVWEELRSKCIPLLXXXX 2668
G+LEFRKAFLIL+Y+G+ ++++ +S+E I+ + L+M FE VW + +
Sbjct: 132 GELEFRKAFLILNYIGKQRIDDVLSIEKIRTWKDLSMQCFEYEVWRTVGERYASQTDRRN 191
Query: 2667 XXXXXXXKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQRVLGDDNVLLVKFAEEM-NIGKG 2491
A Y CHVD G+ FKGP+L+ +TH++RVLGDD VL VKFAEEM + +G
Sbjct: 192 LDWDSGK-AENYQCHVDPVGNFSFKGPFLESTQTHLRRVLGDDKVLTVKFAEEMVDERRG 250
Query: 2490 SHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXXXXXXSP-VKCYFVRMESNWI 2314
++I+ ++A++GILVGLRRY FFV+KDGG + VKCYFV M+S+
Sbjct: 251 EFNLSRSKNIFRRIAKDGILVGLRRYHFFVFKDGGKEEKRKNANTTGVKCYFVCMKSDAE 310
Query: 2313 ADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLILSKTMKLDIDLASVHVEMID 2134
+D PYILS+K I E+R++FM VHTV +L+KYMARFSLILSKT+KL++DL SV++E I+
Sbjct: 311 SDMHTPYILSNKTIQEARSMFMDVHTVPNLAKYMARFSLILSKTIKLEVDLGSVNIERIN 370
Query: 2133 DIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHIFKGKCL------TPMSNQF 1972
D C+D+ I YD+NG+ LIHTDGTGFISED+ K +IFK + L T ++
Sbjct: 371 DKPCLDNHNEIVYDQNGQCLIHTDGTGFISEDLMSKFSKNIFKERYLKQKKVETCLNGME 430
Query: 1971 LDGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLPPRTIQVRPSMRKV 1792
L+ + +E + K ++ + LLIQFRLF G A KGT+L+NKLLPP TIQVRPSM KV
Sbjct: 431 LNAKSVLDEEI---KYVSGDLHLLIQFRLFYDGCAVKGTVLVNKLLPPNTIQVRPSMVKV 487
Query: 1791 KSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFLELLKNALDDAQN 1612
+ D FS + S NS E+V TSNRP+ LSRYLI LL +GGVP F+ L++ ALDD QN
Sbjct: 488 ERDTDFSRLPSFNSFEMVGTSNRPRGAALSRYLITLLSHGGVPKSCFMFLIQAALDDVQN 547
Query: 1611 ARYTKLAAIRVSLKYGDM-DDFLVSRMILCGIPLEEPYMQFRLSVLMKEERKGLKAGKLP 1435
RY+K A+ ++KY ++ D+ LV+RMI CG+PLEEPY+Q RLS+LMKEERKGLK GK+
Sbjct: 548 VRYSKKLALTAAVKYQEISDNLLVARMIFCGLPLEEPYLQHRLSILMKEERKGLKEGKVL 607
Query: 1434 VTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIHVLSARYIKELE 1255
+ + YYLMGT DPTG LK NEVC++L++GQISG VLVY+HPGLHFGDIHV +A YI++L
Sbjct: 608 LPNSYYLMGTADPTGKLKGNEVCIILDHGQISGKVLVYRHPGLHFGDIHVFTATYIEDLV 667
Query: 1254 LFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSSKPWVPMSSTAG 1075
VG++K+AIFF T+G RS ADE+AN DFDGDMYW+S N +LL YF++ PW SS
Sbjct: 668 EIVGNAKFAIFFSTQGPRSAADEIANGDFDGDMYWISTNPELLHYFKAGPPWERSSSEKP 727
Query: 1074 VQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLLTLSDDCAXXXXX 895
Q+ P++ + ELE +LFD FL +RF PS AAD WL YMDRLLTL D+CA
Sbjct: 728 PPQRKPIEYSPDELETELFDLFLESRFHPSIAKCAAADSWLVYMDRLLTLGDECAEEKGC 787
Query: 894 XXXXXXXLVDIYYDAVDAPKSGLKVDVPPELKADKYPHYMEKLKSDSYTSTSILGLIFNK 715
L D+YY+AVDAPKSG KV+VP +LK ++YPH+ME ++ YTSTSILG I++
Sbjct: 788 LHQKMLKLADLYYEAVDAPKSGKKVEVPKDLKPERYPHFME--RTYQYTSTSILGQIYDL 845
Query: 714 AGSVQTEDNQFNGISKLSCFSRYSE-SGLSLWKPRYTNYLSEMAQALEHEIEEFKEEMAD 538
S Q D I L CF E SG+ WK Y Y EM +AL + K+ AD
Sbjct: 846 VASAQM-DVPCEDIELLPCFLEEVEPSGMEKWKGLYAQYRDEMNKALSS--TDQKKSNAD 902
Query: 537 DIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYA-QMGGVGRCSFAWNVAGRA 361
++I+ YK +LY A E+E+ R R++IF EA IY ++Y YA + + +C FAW VAG A
Sbjct: 903 EVIQNYKKILYGAQEYEERTRPREEIFREACEIYAISYFYAKEKSDIAKCGFAWKVAGCA 962
Query: 360 LCMLHASKQDDKSLIPCSRSVLTEIL 283
LC LHA KQ K+ I C SVL E+L
Sbjct: 963 LCELHALKQ-KKNSITCLSSVLQELL 987
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 834 bits (2154), Expect = 0.0
Identities = 459/874 (52%), Positives = 586/874 (67%), Gaps = 7/874 (0%)
Frame = -1
Query: 2883 SGQSISPQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFESVVWEEL 2704
S + S L+ALG+LEFRKAFLIL+YLG LEE +S + I+ + L M+ FES +W+
Sbjct: 9 SESTTSQHLVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDLPMETFESKIWDAF 68
Query: 2703 --RSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQRVLGDDNVL 2530
R I KAHIYHCHVD +G FKGPYL QR +QR LGDDN+L
Sbjct: 69 GCRRDYIKEEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNVLQRTLGDDNIL 128
Query: 2529 LVKFAEEMNIGKG-SHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXXXXXXS- 2356
+VKF E + S + Y + Y+KV +EGI VGLR Y+FFV+KDGG +
Sbjct: 129 MVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFFVFKDGGKEEKKKDPTTS 188
Query: 2355 PVKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLILSKTMK 2176
PVKC+FV MES D + IL K I ++R+VFMHV +SSLS YMARFSLILSKTM
Sbjct: 189 PVKCFFVCMESVASVDNQDN-ILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMN 247
Query: 2175 LDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHIFKGKC 1996
L++DL+ V ++ I D C D DGN Y +G+PLIHTDGTGFIS D+ALKCP + KG C
Sbjct: 248 LEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKNQVKGTC 307
Query: 1995 LTPMSNQFLD-GSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLPPRTI 1819
L + + L +E+ E+ + L + PLLIQFRLFN G A KGT L+NK L RT+
Sbjct: 308 LQASNIERLRVHNEVMEQN---PECLHGDPPLLIQFRLFNNGRAVKGTFLVNKKLNHRTL 364
Query: 1818 QVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFLELL 1639
VRPSM KV++D S S NSLEIV TS RPK+T LS+ LIALL YGGVP E+F+ +L
Sbjct: 365 HVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGIL 424
Query: 1638 KNALDDAQNARYTKLAAIRVSLKYGDMDDFLVSRMILCGIPLEEPYMQFRLSVLMKEERK 1459
NAL+DA K AA+RV+L YGDMDD +V+ MI CGIPLEEPY+Q LS+L KEE+K
Sbjct: 425 NNALEDAHGILSNKKAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQHHLSILKKEEKK 484
Query: 1458 GLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIHVLS 1279
LK GK+PV + YYLMGT DPTGLL+ +EVC++L+ GQ+SG+VLVY++PGLHFGDIH+L
Sbjct: 485 SLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILK 544
Query: 1278 ARYIKELELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSSKPW 1099
A Y++ELE FVG++KYAIFFP KG RSLADEM+ DFDGDM++VSRN +LL F+ ++PW
Sbjct: 545 ATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPRLLENFKQTEPW 604
Query: 1098 VPMSSTAGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLLTLSD 919
P +ST V + P + +D ELE +LF FL NRF+PS+T+ VAAD WL+ MDRLLTL +
Sbjct: 605 TPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSFTVGVAADSWLAMMDRLLTLGN 664
Query: 918 DCAXXXXXXXXXXXXLVDIYYDAVDAP-KSGLKVDVPPELKADKYPHYMEKLKSDSYTST 742
DC L+DIYYDA+DAP K G K++VP LKA+ +PH+MEK + +Y ST
Sbjct: 665 DCTEEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRST 724
Query: 741 SILGLIFNKAGSVQTEDNQFNGISKLSCFSRYSESGLSLWKPRYTNYLSEMAQALEHEIE 562
SILG I++K + + D S ES L WK Y Y +EM AL+ E
Sbjct: 725 SILGKIYDKVKAYEDMD----------LSSNVHESCLVKWKGLYGQYRTEMRNALQAGKE 774
Query: 561 EFKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYA-QMGGVGRCSF 385
K A+++IKKYK +LYEAAEF S R+ ++IFEEA A+Y + Y++A + G VG+C F
Sbjct: 775 --KNNEANEVIKKYKEILYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGF 832
Query: 384 AWNVAGRALCMLHASKQDDKSLIPCSRSVLTEIL 283
AW VAG ALC L+ K ++ + CS S L IL
Sbjct: 833 AWRVAGLALCTLYVLKNQEERPLICSPSALKGIL 866
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 803 bits (2074), Expect = 0.0
Identities = 448/943 (47%), Positives = 598/943 (63%), Gaps = 17/943 (1%)
Frame = -1
Query: 3057 IRNFSGFILYMAN---NFRPIPTQESFADTLPSGSSSPLRSCGVCSEE-SLQSD---PRY 2899
I N FI+ N NF P S S S S C V EE S+ SD P+
Sbjct: 67 IYNLDSFIVSKVNQAVNFTGYPRLSSGVSPANSRSPSGRHVCRVLQEEMSVDSDAPSPKS 126
Query: 2898 VAPSSSGQSIS-PQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFES 2722
+ +G S+ PQL+ALG+LEF+KAFL+LSY+ +L + + + I+ + L M +E+
Sbjct: 127 LKSEENGGSLHIPQLVALGELEFKKAFLLLSYIPGQQLGQVTTADEIRLWKDLPMVAYEA 186
Query: 2721 VVWEELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQRVLGD 2542
VW+ L + P H Y CHV +G FKGP L+ TH+ +VLGD
Sbjct: 187 AVWDRLGRRYCPQTDRRMLQWDSGK-THYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGD 245
Query: 2541 DNVLLVKFAEEMNIGKGSHAFQGYESI-YHKVAQEGILVGLRRYQFFVYKDGGXXXXXXX 2365
+NVL VKFA+ + K S + Y ++A+ GI++GLRRYQFFV+KDGG
Sbjct: 246 ENVLTVKFAD---VPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKD 302
Query: 2364 XXSP-VKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLILS 2188
+ VKCYF+R +S D E PYI + K IHE+R FMHVH +L+ YMARFSLILS
Sbjct: 303 LSTKKVKCYFIRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILS 362
Query: 2187 KTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHIF 2008
KT L++D+ + + IDDI C D DG D+N +P IH+DGTG+ISED+A CP +IF
Sbjct: 363 KTKTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIF 422
Query: 2007 KGKCLTPMSNQFLDGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLPP 1828
KGKCL SE NI ++ + PLLIQFR+F G A KGT LLNK L P
Sbjct: 423 KGKCLR---------SE------NIQEACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCP 467
Query: 1827 RTIQVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFL 1648
RT+QVRPSM KV D S S + N+LE+V TSN P+RT LS+ L+ALL YGG+PNE+FL
Sbjct: 468 RTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLSKNLVALLSYGGIPNEFFL 527
Query: 1647 ELLKNALDDAQNARYTKLAAIRVSLKYGDMDDFLVSRMILCGIPLEEPYMQFRLSVLMKE 1468
++L N L+++++ Y K AA+ V+L YG+MDD ++MIL GIPL+EP+++ LS+L+K
Sbjct: 528 DILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQMILVGIPLDEPHLKNHLSILLKT 587
Query: 1467 ERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIH 1288
E+ LKAG+LPVT+ YYLMGTVDPTG LK +EVCV+LE+GQISG+VLVY++PGLHFGDIH
Sbjct: 588 EKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIH 647
Query: 1287 VLSARYIKELELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSS 1108
+L A Y+K LE +VG+SKYA+FFP KG RSL DE+A DFDGDMY++SRN +LL +F+ S
Sbjct: 648 ILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPS 707
Query: 1107 KPWV----PMSSTAGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMD 940
+PWV P S +G + P L+ ELE++LF+ FL F S I +AAD WL+ MD
Sbjct: 708 EPWVSLTPPSKSNSG---RAPSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMD 764
Query: 939 RLLTLSDDCAXXXXXXXXXXXXLVDIYYDAVDAPKSGLKVDVPPELKADKYPHYMEKLKS 760
RLL L D+ A L+DIYYDA+DAPK G KV +P EL+ D +PHYME+ K
Sbjct: 765 RLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMEREK- 823
Query: 759 DSYTSTSILGLIFNKAGSVQTED-NQFNGISKLSCFSRYSESGLSLWKPR--YTNYLSEM 589
+ STSILGLI++ S TE+ + ISKL CF S + K R Y NY SEM
Sbjct: 824 -KFKSTSILGLIYDFVKSQTTEEPTPSSEISKLPCFEDEPVSEFHMEKCRRWYDNYRSEM 882
Query: 588 AQALEHEIEEFKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYAQM 409
QA++ + K+E A+++I++YK Y AA FEDS + ++++ +AL +Y + YDYA
Sbjct: 883 TQAMKTD----KDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAIH 938
Query: 408 GGVGRCSFAWNVAGRALCMLHASKQDDKSLIPCSRSVLTEILG 280
GV +C F W VAG LC + K+ + + C+ SVL E+ G
Sbjct: 939 AGVSKCGFVWKVAGPVLCRFYLMKKMQEKSLVCAPSVLKELWG 981
>gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 800 bits (2067), Expect = 0.0
Identities = 433/907 (47%), Positives = 587/907 (64%), Gaps = 42/907 (4%)
Frame = -1
Query: 2877 QSISPQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFESVVWEELRS 2698
++ SPQ++AL +L FRK F++ +YL K+E +SV++I+ +++L+M QFES +W
Sbjct: 340 EAASPQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMAQFESQIWRTFGH 399
Query: 2697 KCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHL---IFKGPYLQLQRTHMQRVLGDDNVLL 2527
K I +YHC+V + G IFKGPY++ RTH+Q+V+GDDNVL+
Sbjct: 400 KYIAASDRAKNLDSDPGMTKVYHCNVAIRGDTVVKIFKGPYIENTRTHLQKVVGDDNVLV 459
Query: 2526 VKFAEEMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXXXXXXS--- 2356
VKF +++ K F Y YHKVA++GI++GLRRY+FFVYKDGG
Sbjct: 460 VKFMGKLSDTKTD--FSTYCEHYHKVAEDGIVLGLRRYRFFVYKDGGKEEKLKQEKIEDK 517
Query: 2355 -----PVKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLIL 2191
PV CYFVR ES W D+ PYILS + + ++R +FMH+ + +L+KYMARF+LIL
Sbjct: 518 NKCTSPVMCYFVRTESGWNMDE--PYILSGRTVGQARELFMHISSAPTLAKYMARFALIL 575
Query: 2190 SKTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHI 2011
SKT+ D DL++V+V I D C+D GN+ + + EPLIHTDGTG +S D+AL CP I
Sbjct: 576 SKTITWDADLSAVYVRRIKDEPCMDRHGNVVHKDQ-EPLIHTDGTGLVSVDLALNCPTSI 634
Query: 2010 FKGKCLTPMSNQFLDGSEIAEEPLNITK--SLTSEAPLLIQFRLFNKGAAFKGTLLLNKL 1837
FKGK L P D SE P ++ + SLT+E PLL+QFRLF G+A KGT+L+++
Sbjct: 635 FKGKFLKPQGIATCDESETVMRPNSLKRHRSLTAEHPLLMQFRLFYNGSAVKGTVLVDRR 694
Query: 1836 LPPRTIQVRPSMRKVKSDA---------------------SFSYIQSCNSLEIVATSNRP 1720
LPP TI +RPSM K+++ S S +QS NS EIV+TSNRP
Sbjct: 695 LPPATILIRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRP 754
Query: 1719 KRTCLSRYLIALLHYGGVPNEYFLELLKNALDDAQNARYTKLAAIRVSLKYGDMDDFLVS 1540
+RT SR+LI LL YGGVP EYFLELL++A++ A+NA Y A+R++ Y DM+D + +
Sbjct: 755 RRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADMEDSMSA 814
Query: 1539 RMILCGIPLEEPYMQFRLSVLMKEERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVV 1360
RMIL GIPLEE Y+Q RL + ++ERKG+K GK+P+ +CYYLM T DPTG L+PNEVCV+
Sbjct: 815 RMILSGIPLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVI 874
Query: 1359 LENGQISGDVLVYKHPGLHFGDIHVLSARYIKELEL-FVGDSKYAIFFPTKGSRSLADEM 1183
LENGQ SGDVLVYKHPGLHFGDIHVL A YI++LE +VG +KYAI FP G RSLADEM
Sbjct: 875 LENGQFSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEM 934
Query: 1182 ANSDFDGDMYWVSRNSQLLRYFRSSKPWVPMSSTAGVQQKGPLDLTDRELEKKLFDQFLA 1003
ANSDFDGD+YWVS+N +LL +F+ S+PWV +QK P D + +LE+ LF +FL
Sbjct: 935 ANSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLK 994
Query: 1002 NRFKPSYTISVAADCWLSYMDRLLTLSDDCAXXXXXXXXXXXXLVDIYYDAVDAPKSGLK 823
RF PS+ + AAD WL+YMDRLLT S D LVD+YY A+DAPK+G K
Sbjct: 995 TRFTPSFALGTAADSWLAYMDRLLTDSLD-EIEKKLIEEKMLKLVDLYYLALDAPKTGNK 1053
Query: 822 VDVPPELKADKYPHYMEKLKSDSYTSTSILGLIFNKAGSVQTEDN---QFNGISKLSCFS 652
V++P +L +YPH+M +S SY S+SILG I++KA V++ + Q G+S L CF
Sbjct: 1054 VNIPSDLMVKQYPHFMG--RSFSYHSSSILGQIYDKAEDVESLRSCNVQPIGVSLLPCFM 1111
Query: 651 RYS--ESGLSLWKPRYTNYLSEMAQALEHEIEEFKEEMA-DDIIKKYKWMLYEAAEFEDS 481
+ LW+ RY YL++ +++ + M ++ +KYK MLY+A+EFE +
Sbjct: 1112 EREAPPAARHLWQHRYEEYLTDSTMLYRAMVDKEERNMKFQELYEKYKHMLYDASEFEQT 1171
Query: 480 PRKRDDIFEEALAIYNLAYDYAQMGG-VGRCSFAWNVAGRALCMLHASKQDDKSLIPCSR 304
R DD+F EA IY + Y+ A+ RC FAW VAGRALC +A K + + + CS
Sbjct: 1172 QRDPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHFYALKNEGDTAL-CSL 1230
Query: 303 SVLTEIL 283
+L +I+
Sbjct: 1231 PLLRKII 1237
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 799 bits (2063), Expect = 0.0
Identities = 475/1017 (46%), Positives = 613/1017 (60%), Gaps = 43/1017 (4%)
Frame = -1
Query: 3207 VWLPRSVEELLHRICVEQSLLQPDPXXXXXXXXXXXXXXXDVLMQMSGRRIRNFSGFILY 3028
V LP SVE+ L IC PD D L ++S +RN SGFIL+
Sbjct: 58 VSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCSTVRNLSGFILH 117
Query: 3027 MANNFRPIPTQESFADTLPSGSSSP------LRSCGVCSEESLQSDPRYVAPSSSG---- 2878
+ Q P S S L+S CS QS + S G
Sbjct: 118 LVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQGLGTA 177
Query: 2877 --QSISP--------------------QLIALGQLEFRKAFLILSYLGRYKLEETISVEF 2764
S+ P Q +ALG+LEFRK L L++ + +
Sbjct: 178 ENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKITL---------LKKRPWLLY 228
Query: 2763 IKQIQ-WLNMDQFESVVWEELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFKGP 2587
Q++ WL + E L S + + HIYHCHV L+G FKGP
Sbjct: 229 GNQVERWLGWELVSVTHSESLPSYLVQYVDWDRRK------THIYHCHVALDGSCRFKGP 282
Query: 2586 YLQLQRTHMQRVLGDDNVLLVKFAEEMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQF 2407
+L +TH+QRVLGDDNVL+VKFAE+ + S+ G Y K+A++GIL+GLRRY F
Sbjct: 283 FLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHF 342
Query: 2406 FVYKDGGXXXXXXXXXSP-VKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVS 2230
FV+KDGG + VKCYFVRMES+ D+ +PY LS++ + E+R++FMH H VS
Sbjct: 343 FVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLFMHAHMVS 402
Query: 2229 SLSKYMARFSLILSKTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGF 2050
S++ YMARFSLILSKT+ L IDL++V+V+ I DI C D GN+ Y +G+PLIHTDGTGF
Sbjct: 403 SIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIY-RDGKPLIHTDGTGF 461
Query: 2049 ISEDIALKCPHHIFKGKCLTPMSNQFL-------DGSEIAEEPLNITKSLTSEAPLLIQF 1891
ISED+AL+CP ++FKG+ + + +G + L + E PLLIQF
Sbjct: 462 ISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREPPLLIQF 521
Query: 1890 RLFNKGAAFKGTLLLNKLLPPRTIQVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRT 1711
RLF G A KGT LLNK LPPRTIQ+R SM KV+ D ++ NSLE+V TSN PKRT
Sbjct: 522 RLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKRT 581
Query: 1710 CLSRYLIALLHYGGVPNEYFLELLKNALDDAQNARYTKLAAIRVSLKYGDMDDFLVSRMI 1531
LSR LIALL+YGGVP EYF+ +L +AL D Q +K AA+RVS+ G+MDDFLV+RMI
Sbjct: 582 FLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMI 641
Query: 1530 LCGIPLEEPYMQFRLSVLMKEERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLEN 1351
L GIPL+E Y+Q+RLSVL+KEE+K LK+G+L V +CYYLMGTVDPT L+ EVCV+L N
Sbjct: 642 LAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILYN 701
Query: 1350 GQISGDVLVYKHPGLHFGDIHVLSARYIKELELFVGDSKYAIFFPTKGSRSLADEMANSD 1171
GQI+G VLVY++PGLHFGDIHVL+A+Y+++L VG++KYAIFF +KG RS+ADE+A D
Sbjct: 702 GQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGD 761
Query: 1170 FDGDMYWVSRNSQLLRYFRSSKPWVPMSSTAGVQQKGPLDLTDRELEKKLFDQFLANRFK 991
FDGDMYWVSRNSQLL YFR +PW P ST V K P + + ELE +LF FL+ RF+
Sbjct: 762 FDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRFQ 821
Query: 990 PSYTISVAADCWLSYMDRLLTLSDDCAXXXXXXXXXXXXLVDIYYDAVDAP-KSGLKVDV 814
PSY SVAAD WL+ MD+ L L ++ L++IYYDA+DAP K G K++V
Sbjct: 822 PSYAKSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEV 881
Query: 813 PPELKADKYPHYMEKLKSDSYTSTSILGLIFNKAGSVQTEDNQFNGISKLSCF-SRYSES 637
P LKA PH+ME+ K +SY STSILG IF+ A Q E + KL CF E
Sbjct: 882 PKHLKAGTLPHFMERGK-NSYVSTSILGQIFDTANMYQEEVPNIE-VQKLPCFEEELPEY 939
Query: 636 GLSLWKPRYTNYLSEMAQALEHEIEEFKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIF 457
WK Y Y +M A++ + + K A+ IKKYK +LY A E E SPR ++++
Sbjct: 940 IFMKWKFLYELYRKDMVDAMQLD-PDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVY 998
Query: 456 EEALAIYNLAYDYAQMGGVGRCSFAWNVAGRALCMLHASKQDDKSLIPCSRSVLTEI 286
+EALAIY + YD+A V C FAW VAG AL L+A K ++S C SV+ EI
Sbjct: 999 QEALAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIKHSERS-FHCLPSVMREI 1054
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 795 bits (2053), Expect = 0.0
Identities = 446/941 (47%), Positives = 590/941 (62%), Gaps = 17/941 (1%)
Frame = -1
Query: 3051 NFSGFILYMANNFRPI---PTQESFADTLPSGSSSPLRSCGVCSEESLQSDPRYVAPSS- 2884
N GFI+ N + P S S SS + +E + D +P S
Sbjct: 74 NLDGFIVSKFNQAVSVTGSPRLSSGGSPAKSPPSSSRKHGSRVHQEEMSLDFEAPSPESL 133
Query: 2883 ------SGQSISPQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFES 2722
I PQ++AL +LEF+KAFL+LSY L E +S + I+Q + L M +E+
Sbjct: 134 RRGDIGGSPHIPPQILALSELEFKKAFLLLSYFPGQSLAEVLSADEIRQWKDLPMVAYEA 193
Query: 2721 VVWEELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQRVLGD 2542
VW+ L + K H Y CHV +G FKGP L+ TH+ +VLGD
Sbjct: 194 AVWDRLSRLELSQTVERVSLEWDSEKTHYYQCHVASDGSYTFKGPLLEPTGTHLHKVLGD 253
Query: 2541 DNVLLVKFAEEMNIGKGSHAFQGYE-SIYHKVAQEGILVGLRRYQFFVYKD-GGXXXXXX 2368
+NVL VKFA+ + K S + S Y ++A+ GI+VGLRRYQFFV+KD G
Sbjct: 254 ENVLTVKFAD---VQKNSSTYSNDRYSAYKRIAKNGIMVGLRRYQFFVFKDVGKAEKKKD 310
Query: 2367 XXXSPVKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLILS 2188
+ VKCYF+R +S D K YI S K I+E+R FMHVHT+ SL+KYMARFSLILS
Sbjct: 311 FSTNGVKCYFIRTDSTAANDMGKAYIFSGKTINEARMHFMHVHTLPSLAKYMARFSLILS 370
Query: 2187 KTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHIF 2008
KT KL++D+ + + I +I C D + N+ D+N EP +H+DGTG+ISED+A CP +IF
Sbjct: 371 KTKKLEVDMTGITYQEIKEIHCHDQNNNVVLDKNKEPRMHSDGTGYISEDLARMCPVNIF 430
Query: 2007 KGKCLTPMSNQFLDGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLPP 1828
KGKCL+ NI +S + PLLIQFR+F G A KGT LLNK LP
Sbjct: 431 KGKCLSKK---------------NIQESCGQDPPLLIQFRMFYDGNAVKGTFLLNKKLPD 475
Query: 1827 RTIQVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFL 1648
RT+QVRPSM KV D + S + NSLE+V TSN PKRT LSR L+ALL YGGVPNE+FL
Sbjct: 476 RTVQVRPSMIKVSKDRALSNFSTFNSLEVVTTSNPPKRTKLSRNLVALLSYGGVPNEFFL 535
Query: 1647 ELLKNALDDAQNARYTKLAAIRVSLKYGDMDDFLVSRMILCGIPLEEPYMQFRLSVLMKE 1468
+LL N +++ + K AA++ +L +GDMDD ++MIL GIPL+EP+++ RLS+L
Sbjct: 536 DLLLNTMEETKTIFNNKRAALKAALNHGDMDDQNAAQMILVGIPLDEPHLKDRLSILSNI 595
Query: 1467 ERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIH 1288
E+ LKAG+LPVT+ YYLMGTVDPTG LK +EVCV+LE+GQISGDVLVY++PG+HFGDIH
Sbjct: 596 EKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGDVLVYRNPGVHFGDIH 655
Query: 1287 VLSARYIKELELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSS 1108
VL A Y+K LE +VG+SKYA+FFP KG RSL DE+A DFDGDMY++SRN +LL F+ S
Sbjct: 656 VLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEQFKPS 715
Query: 1107 KPWVPMS-STAGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLL 931
+PWV +S + + P+D + ELE++LFD FL RF S I +AAD WL+ MDR L
Sbjct: 716 EPWVSLSPPSKSNSTRKPIDFSPEELEEELFDMFLKARFHSSNVIGMAADSWLTIMDRFL 775
Query: 930 TLSDDCAXXXXXXXXXXXXLVDIYYDAVDAPKSGLKVDVPPELKADKYPHYMEKLKSDSY 751
TL D+ A L+DIYYDA+DA K G+KV +P LK D +PHYME+ K +
Sbjct: 776 TLGDERAEEKAEMKRKMLSLIDIYYDALDAAKKGVKVSLPDALKPDIFPHYMERDK--KF 833
Query: 750 TSTSILGLIFNKAGSVQTEDN-QFNGISKLSCF--SRYSESGLSLWKPRYTNYLSEMAQA 580
STSILG+I++ S E++ + ISKL CF SE +P Y NY +EM QA
Sbjct: 834 KSTSILGIIYDFVQSQTAEEHTPSSEISKLQCFEDEPVSEFHKEKCRPWYDNYRAEMIQA 893
Query: 579 LEHEIEEFKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYA-QMGG 403
L + K++ A ++I+KYK Y AA FEDS + ++++ +ALA+YN+ YDYA +M
Sbjct: 894 LSN-----KDDTASEVIEKYKQEFYGAAGFEDSKKSLEELYPQALALYNIVYDYAIEMKS 948
Query: 402 VGRCSFAWNVAGRALCMLHASKQDDKSLIPCSRSVLTEILG 280
V +C FAW VAG LC + K K+L+ CS S+L E+ G
Sbjct: 949 VRKCGFAWKVAGPVLCRFYLKKTGGKALL-CSLSMLKELWG 988
>ref|XP_006645606.1| PREDICTED: probable RNA-dependent RNA polymerase 4-like [Oryza
brachyantha]
Length = 1004
Score = 788 bits (2035), Expect = 0.0
Identities = 439/924 (47%), Positives = 594/924 (64%), Gaps = 54/924 (5%)
Frame = -1
Query: 2868 SPQLIALGQLEFRKAFLILSYLGRY-----------KLEETISVEFIKQIQWLNMDQFES 2722
SPQ++AL +LEF K F+I +YL K+E+ +SV++I+ ++ L+M FES
Sbjct: 97 SPQMLALEELEFSKIFMIFAYLSWLVSLGLMLFIYEKIEDVLSVDYIRSLKSLSMPHFES 156
Query: 2721 VVWEELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHL---IFKGPYLQLQRTHMQRV 2551
+W K I +YHC+V + G IFKGPY++ RTH+Q+V
Sbjct: 157 QIWSTFGHKHISSSDRAKNLYSDPGMTKVYHCNVQIRGDTVIKIFKGPYVENTRTHLQKV 216
Query: 2550 LGDDNVLLVKFAEEMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXX 2371
+GDDNVL+V F E+ + K F Y + YHKVA++GI++GLR Y+FF+YKDGG
Sbjct: 217 IGDDNVLVVNFMEKPSDIKTD--FLTYCAHYHKVAEDGIVLGLRHYRFFLYKDGGKDSKM 274
Query: 2370 XXXXSP---------VKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSK 2218
V+CYFVR ES W D+ PYILS K I ++R +FMH+HT +L K
Sbjct: 275 KEEKRKEKNKKCTSSVRCYFVRTESRWNMDE--PYILSGKTIGQARGLFMHIHTALTLPK 332
Query: 2217 YMARFSLILSKTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISED 2038
YM+RF+LI+SKT+ LD+DL++V VE+IDD C+D+ N + +GEPLIHTDGTG IS+D
Sbjct: 333 YMSRFALIVSKTITLDVDLSAVRVELIDDEPCLDEHRNFVF-RDGEPLIHTDGTGLISQD 391
Query: 2037 IALKCPHHIFKGKCLTPMSNQFLDGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKG 1858
+ALKC IFKGK L P D S++ + + T+E PLLIQ RLF G+A KG
Sbjct: 392 LALKCMSSIFKGKLLKPQDIVDCDESKL------MGYNSTTEYPLLIQLRLFYNGSAVKG 445
Query: 1857 TLLLNKLLPPRTIQVRPSMRKVKSDA---------------------SFSYIQSCNSLEI 1741
T+L++K L P TI +RPSM K+K+D S S +Q NS EI
Sbjct: 446 TVLVDKRLSPGTILIRPSMVKIKTDPKLSSIHSVNSFEIVSARNAKKSLSDVQFVNSFEI 505
Query: 1740 VATSNRPKRTCLSRYLIALLHYGGVPNEYFLELLKNALDDAQNARYTKLAAIRVSLKYGD 1561
V+TSNRP+RT SR LIALLHYGGVP E+F+ELL+NA++DA+NAR+ A+ ++ Y D
Sbjct: 506 VSTSNRPRRTSTSRILIALLHYGGVPEEFFMELLQNAIEDAENARFDYGDALNIAFSYAD 565
Query: 1560 MDDFLVSRMILCGIPLEEPYMQFRLSVLMKEERKGLKAGKLPVTDCYYLMGTVDPTGLLK 1381
M+D + +RMIL GIPL+E Y+Q RL+ + K+ERKG+K GK+P+ +CYYLMGT DPTG+L
Sbjct: 566 MEDSMSARMILAGIPLDELYLQSRLTFMAKQERKGIKEGKIPIDNCYYLMGTADPTGILA 625
Query: 1380 PNEVCVVLENGQISGDVLVYKHPGLHFGDIHVLSARYIKELELFVGDSKYAIFFPTKGSR 1201
PNEVCV+L+NGQ+SGDVLVYKHPGLHFGDIHVL A YI LE VG SKY I FPT G R
Sbjct: 626 PNEVCVILDNGQLSGDVLVYKHPGLHFGDIHVLKATYIPGLEEVVGCSKYVILFPTTGQR 685
Query: 1200 SLADEMANSDFDGDMYWVSRNSQLLRYFRSSK--PWVPMSSTAGVQQKGPLDLTDRELEK 1027
SLADEMANSDFDGD++W+S N +LL +F+ SK W + +Q GP D + ELE+
Sbjct: 686 SLADEMANSDFDGDIFWISINPKLLEHFKPSKAWEWEQAITPKEAKQMGPQDFNESELER 745
Query: 1026 KLFDQFLANRFKPSYTISVAADCWLSYMDRLLTLSDDCAXXXXXXXXXXXXLVDIYYDAV 847
LF +FL RF PSY ++ A++ WL YMDRLLT D LVD+YY A+
Sbjct: 746 LLFHEFLKARFAPSYALATASNNWLVYMDRLLTDPVD-ESEKELIKEKMLKLVDLYYVAL 804
Query: 846 DAPKSGLKVDVPPELKADKYPHYMEKLKSDSYTSTSILGLIFNKAGS---VQTEDNQFNG 676
DAPKSG KV++P +L +YPH+M +S SY S+SILG +++KA ++ ++ Q G
Sbjct: 805 DAPKSGKKVNIPSDLMVKQYPHFMG--RSSSYHSSSILGKLYDKADDANLLRFDNVQPIG 862
Query: 675 ISKLSCFS-RYSESGL-SLWKPRYTNYLSEMAQALEHEI--EEFKEEMADDIIKKYKWML 508
IS L CF+ R + + +LW+ RY YLS+ ++ L + +E K +++ KKYK ML
Sbjct: 863 ISLLPCFTERVAPPTIKNLWQRRYNEYLSDSSKLLNDKAVDKEEKNMKFEELYKKYKHML 922
Query: 507 YEAAEFEDSPRKRDDIFEEALAIYNLAYDYAQM-GGVGRCSFAWNVAGRALCMLHASKQD 331
Y+A+EFE++PR D+F +A AIY + Y+ A+ RC FAWNVAGRALC +A K +
Sbjct: 923 YDASEFEETPRNFGDVFTDACAIYQIVYEKARRENAAARCCFAWNVAGRALCHYYALKNE 982
Query: 330 DKSLIPCSRSVLTEILG**KFDKR 259
+++ CS +L KF K+
Sbjct: 983 GDTVV-CSLPLLRSY----KFSKK 1001
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 785 bits (2026), Expect = 0.0
Identities = 429/938 (45%), Positives = 591/938 (63%), Gaps = 12/938 (1%)
Frame = -1
Query: 3057 IRNFSGFILYMANNFRPI---PTQESFADTLPSGSSSPLRSCGVCSEESLQSD---PRYV 2896
++ G I+Y + P + S + +SC + SL + P+++
Sbjct: 67 LKTLDGLIMYFVKGTVTVDGSPRLSPGESPVQSPRTPAKKSCRASQDVSLDLETPSPKFM 126
Query: 2895 APSSSGQS-ISPQLIALGQLEFRKAFLILSYLGRYKL-EETISVEFIKQIQWLNMDQFES 2722
+G S P L+ALG+LEF+KAFL+LSY+G L EE IS + I++ + L M +E+
Sbjct: 127 KREENGGSKYIPPLLALGELEFKKAFLLLSYIGGESLVEEVISGDQIRKWKDLPMVSYEA 186
Query: 2721 VVWEELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQRVLGD 2542
VW L + H Y CHV +G FKG L+ TH+ +VLGD
Sbjct: 187 AVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGD 246
Query: 2541 DNVLLVKFAEEMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXXXXX 2362
DNVL VKF + +G ++ Y S Y +A+ GI+VGLRRY+FFV+KDGG
Sbjct: 247 DNVLTVKF--DKVLGVETYCNDLY-STYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDV 303
Query: 2361 XSP-VKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLILSK 2185
+ VKCYF+R +S D + PYI + K +HE+R FMHV+T+SSL YM+RFSLILSK
Sbjct: 304 STKGVKCYFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSK 363
Query: 2184 TMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHIFK 2005
T L++D+ + E IDDI C D D D+NG+P IH+DGTG+ISED+A CP +IFK
Sbjct: 364 TKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFK 423
Query: 2004 GKCLTPMSNQFLDGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLPPR 1825
GK + + Q + + + P E PLLIQFR+F G A KGT L NK LPPR
Sbjct: 424 GKSMRSNNIQSKNLNFEGQGPCG------QEPPLLIQFRIFYNGYAVKGTFLTNKKLPPR 477
Query: 1824 TIQVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFLE 1645
T+QVRPSM KV D + S + + NSLE+V TSN P++ LSR L+ALL YGGVPN++FL
Sbjct: 478 TVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLN 537
Query: 1644 LLKNALDDAQNARYTKLAAIRVSLKYGDMDDFLVSRMILCGIPLEEPYMQFRLSVLMKEE 1465
+L+N L++++ Y++ AA + ++ YGD D + MIL GIPL+EPY++ RLS L+K E
Sbjct: 538 ILRNTLEESKTIFYSERAAFKAAINYGD--DQYTADMILVGIPLDEPYLKDRLSYLLKTE 595
Query: 1464 RKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIHV 1285
R LKAG+ P+ + YY+MGTVDPTG LK NE+CV+L +GQISGDVLVY++PGLHFGDIHV
Sbjct: 596 RNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHV 655
Query: 1284 LSARYIKELELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSSK 1105
L A Y+K LE +VG++K+A+FFP KG RSL DE+A DFDGDMY++SRN +LL +F+ S+
Sbjct: 656 LKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSE 715
Query: 1104 PWVPMSSTAGVQ-QKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLLT 928
PWV S + + + P +L++ ELE++LF FL RF I +AADCWL MD LT
Sbjct: 716 PWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLT 775
Query: 927 LSDDCAXXXXXXXXXXXXLVDIYYDAVDAPKSGLKVDVPPELKADKYPHYMEKLKSDSYT 748
L D+ A L+DIYYDA+DAPK G KVD+PP+L+ +PHYME+ +
Sbjct: 776 LGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFR 835
Query: 747 STSILGLIFNKAGSVQTEDNQFNGISKLSCF--SRYSESGLSLWKPRYTNYLSEMAQALE 574
STSILGLIF+ S E+ + ISKL F +S + + Y NY SEM+QA+
Sbjct: 836 STSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMM 895
Query: 573 HEIEEFKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYAQMGGVGR 394
+ + ++ +++I++YK Y AA FEDS + ++++ +ALA+YN+ YDYA GV +
Sbjct: 896 ETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGVAK 955
Query: 393 CSFAWNVAGRALCMLHASKQDDKSLIPCSRSVLTEILG 280
C+FAWNVAG LC + K DKS++ S SVL ++LG
Sbjct: 956 CTFAWNVAGPVLCKFYLKKTKDKSVV-ASTSVLKKLLG 992
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 784 bits (2024), Expect = 0.0
Identities = 458/1000 (45%), Positives = 629/1000 (62%), Gaps = 16/1000 (1%)
Frame = -1
Query: 3237 MAHDNALDNAVWLPRSVEELLHRICVEQSLLQPDPXXXXXXXXXXXXXXXDVLMQMSGRR 3058
MA ++ + + LP SVE L+ IC +Q+ D +L +++ R
Sbjct: 1 MAENHNHRDLLILPPSVEALIESICRDQNRPPLDYSTRHRLKLQGEEQSLRILNKIAATR 60
Query: 3057 IR-NFSGFILYMANNFRPIPTQESFADTLPSGSSSPLRSCGVCSEESLQSDPRYVAPSSS 2881
IR +F+GF+ +M ++ + + + +++ S S S R P+ S
Sbjct: 61 IRLSFAGFVNHMLDDINHQNNNNNNNNNNNNNNNNNSHSQPEPSTRQQTSPTRPPRPTPS 120
Query: 2880 GQSISPQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFESVVWEELR 2701
L ALG+LEFRKAFLILSY+GR LE I+ I+ ++ L M +FE +WE+
Sbjct: 121 SL-----LHALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDLPMAKFEKTIWEDFG 175
Query: 2700 SKCI-PLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFKGPYLQLQRTHMQRVLGDDNVLLV 2524
KCI + H+Y C V +G+L FKGP LQ RTH+Q+ LGDDNVLLV
Sbjct: 176 EKCIYDQSDRQLHRDWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLV 235
Query: 2523 KFAEEMNIGKG--SHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXXXXXXSP- 2353
KFAE+ + GK +HA + ++Y K +EGI VGLR Y+FFV+KDGG S
Sbjct: 236 KFAEDGS-GKNFRTHAEEA-NALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSST 293
Query: 2352 VKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTV-SSLSKYMARFSLILSKTMK 2176
VKCYFVRM+S AD+ YILS+K + E+R +FMH H + +L+KYMARFSLILSKT+K
Sbjct: 294 VKCYFVRMQSGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLK 353
Query: 2175 LDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHIFKGK- 1999
L+IDL +V V+ I D C D +GNI D N +P I TDGTGFIS D+AL CP++++KG
Sbjct: 354 LNIDLTTVSVQKIPDEYCKDANGNIMVD-NEKPRILTDGTGFISRDLALLCPNNVYKGSN 412
Query: 1998 ----CLTPMSNQFLDGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLP 1831
C+ ++N ++ +++ + T E PLLIQ RLF+ G A KGTLL+N+ LP
Sbjct: 413 LENNCIQEINN-LVELEDMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNRKLP 471
Query: 1830 PRTIQVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYF 1651
PRTIQVRPSM KV+ D S ++QS NSLE+V TSN+PKR LS++LIALL +GGVPNE+F
Sbjct: 472 PRTIQVRPSMIKVEKDPSV-HMQSINSLEVVTTSNKPKRGYLSKHLIALLSFGGVPNEFF 530
Query: 1650 LELLKNALDDAQNARYTKLAAIRVSLKYGDMDDFLVSRMILCGIPLEEPYMQFRLSVLMK 1471
++LL++ ++DA + K +A+R S+ G+ D++ + MILCGIPL+EP+++ LS +
Sbjct: 531 MDLLRSNMEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPFLKHHLSRFAR 590
Query: 1470 EERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDI 1291
EE+K L+ GKL + DC+YLMGTVDPTG LK N+VC++ EN QI GDVLVY++PGLHFGDI
Sbjct: 591 EEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDI 650
Query: 1290 HVLSARYIKELELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRS 1111
H + A Y+KELE +VG SKY IFFP G+RS+ADE+A DFDGD YWVS + QLL+YFR
Sbjct: 651 HKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQLLQYFRK 710
Query: 1110 SKPWVPMSSTAGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLL 931
PW+ S K P + + ELE++LF FL RF+PSY + ++ + W++ MDRLL
Sbjct: 711 GDPWIENSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRLL 770
Query: 930 TLSDDCA--XXXXXXXXXXXXLVDIYYDAVDAPKSGLKVDVPPELKADKYPHYMEKLKSD 757
TL ++C L+DIYY+A+DAPKSG KV VP +L A+ +PHYMEK K
Sbjct: 771 TL-NNCTNENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELFPHYMEKDK-- 827
Query: 756 SYTSTSILGLIFNKAGSVQTEDNQFNGISKLSCFS-RYSESGLSLWKPRYTNYLSEMAQA 580
S+TSTSILGLI+++ + E++ I KL CF S L WK +Y Y +M A
Sbjct: 828 SFTSTSILGLIYDEV-EIWLENDMVGEIWKLPCFDVEVPPSCLEKWKTKYEEYRKDMTDA 886
Query: 579 LEHEIEEFKEEMADDIIKKYKWMLY-EAAEFEDSPRKRDDIFEEALAIYNLAYDYAQM-G 406
L + + E A ++ +KYK Y E E + DIF EALA+YN++Y+YA +
Sbjct: 887 LNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKK 946
Query: 405 GVGRCSFAWNVAGRALCMLHASKQDDKSLIPCSRSVLTEI 286
V RC FAW +AG AL L+ KQ++K+L C SV+ EI
Sbjct: 947 EVKRCGFAWKIAGSALTRLYIIKQNEKAL-NCDPSVVREI 985
>ref|XP_006645607.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
3-like [Oryza brachyantha]
Length = 1109
Score = 783 bits (2022), Expect = 0.0
Identities = 435/914 (47%), Positives = 581/914 (63%), Gaps = 35/914 (3%)
Frame = -1
Query: 2931 SEESLQSDPRYVAPSSSGQSISPQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQI 2752
S L + R+ + S+SPQ++AL +LEF+K F+I +YLG K+E +SV++I+ +
Sbjct: 221 SGSPLSATTRHATANPLRDSVSPQMLALEELEFKKIFMIFAYLGCNKIETVLSVDYIRSL 280
Query: 2751 QWLNMDQFESVVWEELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLI---FKGPYL 2581
++ M QFES +W K I + +YHC+V++ G + FKGPY+
Sbjct: 281 XFMPMAQFESKIWRTFGYKNIAVSDRAKNLDSDPLTTKVYHCNVEIRGDSVVTLFKGPYI 340
Query: 2580 QLQRTHMQRVLGDDNVLLVKFAEEMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFV 2401
RTH+Q+V+GDDNVL+VKF E+++ K F Y YHKVA +GIL+GLRRYQFF+
Sbjct: 341 GNTRTHLQKVVGDDNVLVVKFMEKLSETKTD--FSTYCEHYHKVANDGILLGLRRYQFFI 398
Query: 2400 YKDGGXXXXXXXXXS-----PVKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHT 2236
YKDGG V+CYFVR ES W D+ PYILS K + ++R +FMH++T
Sbjct: 399 YKDGGKEKKMIEGEKRNSSSTVRCYFVRTESGWNTDE--PYILSGKTVGQARELFMHINT 456
Query: 2235 VSSLSKYMARFSLILSKTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGT 2056
+L+KYMAR +LILSKT+ LD DL+ V V +ID+ C+D+ GN+ +GEPLI TDGT
Sbjct: 457 APTLAKYMARLALILSKTITLDADLSQVLVRLIDE-PCLDEHGNVVL-RDGEPLIRTDGT 514
Query: 2055 GFISEDIALKCPHHIFKGKCLTPMSNQFLDGSEIAEEPLNITKSLTSEAPLLIQFRLFNK 1876
G ISED+ALKCP IFKGK L PLL+QFRLF
Sbjct: 515 GLISEDLALKCPTSIFKGKFL-------------------------KSQPLLMQFRLFYY 549
Query: 1875 GAAFKGTLLLNKLLPPRTIQVRPSMRKV-------------------KSDASFSYIQSCN 1753
G+A KGT+L+++ L P I VRPSM + + S S +QS N
Sbjct: 550 GSAVKGTVLVDRRLSPGNILVRPSMLRSYPELSDVQSVNSSEIVFARNAKKSLSGVQSVN 609
Query: 1752 SLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFLELLKNALDDAQNARYTKLAAIRVSL 1573
S EIV+TSN P+RT SR+LIALL YGGVP EYFLELL+NA++ A+NA Y A++++
Sbjct: 610 SFEIVSTSNXPRRTLTSRFLIALLCYGGVPEEYFLELLENAIEGAENACYYYEDALKIAF 669
Query: 1572 KYGDMDDFLVSRMILCGIPLEEPYMQFRLSVLMKEERKGLKAGKLPVTDCYYLMGTVDPT 1393
Y DM+D + +RMIL GIPLEE Y+Q RL+ + ++ERKG+K GK+P+ +CYYLMGT DPT
Sbjct: 670 SYADMEDSISARMILSGIPLEESYLQSRLAFMARQERKGIKQGKIPIDECYYLMGTTDPT 729
Query: 1392 GLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIHVLSARYIKELE-LFVGDSKYAIFFP 1216
G L PNEVCV+LENGQ+ GDVLVYKHPGLHFGDIHVL A YIK+LE +VG SKYAI FP
Sbjct: 730 GTLGPNEVCVILENGQLCGDVLVYKHPGLHFGDIHVLKATYIKDLEKKYVGYSKYAILFP 789
Query: 1215 TKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSSKPWVPMSSTAGVQQKGPLDLTDRE 1036
T G RSLADEMANSDFDGDMYWVS+N +LL +F+ S+PWV + +QK P D + +
Sbjct: 790 TSGPRSLADEMANSDFDGDMYWVSKNPKLLEHFKPSEPWVETITPKRRKQKKPQDFNESK 849
Query: 1035 LEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLLTLSDDCAXXXXXXXXXXXXLVDIYY 856
LE+ LF +FL RF PSY + AAD WL+Y+DR LT S D LVD+YY
Sbjct: 850 LERLLFHEFLKTRFTPSYALGTAADSWLAYVDRXLTGSLD-ESEKKIMKEKMTKLVDLYY 908
Query: 855 DAVDAPKSGLKVDVPPELKADKYPHYMEKLKSDSYTSTSILGLIFNKAGSVQT---EDNQ 685
DA+DAPK+G KV++ L +YPH+M ++ SY S+SILG I+++A +++ ++
Sbjct: 909 DALDAPKTGNKVNIASGLITKRYPHFMGRI--PSYHSSSILGQIYDRAEDIESLRYDNVA 966
Query: 684 FNGISKLSCFSRYS--ESGLSLWKPRYTNYLSEMAQALEHEIEEFKEEMADDIIKKYKWM 511
+GIS L CF+ LW+ RY YL++ E + EE + + +KYK M
Sbjct: 967 PSGISLLPCFTERDAPPETKRLWQQRYEEYLTDSRLLYEVDKEE-RNMKFQKLYEKYKRM 1025
Query: 510 LYEAAEFEDSPRKRDDIFEEALAIYNLAYDYAQM--GGVGRCSFAWNVAGRALCMLHASK 337
LY+A+EFE +PR DD+F EA IY + Y+ A+ G GRC FAW VAGRAL +A K
Sbjct: 1026 LYDASEFEQTPRGFDDVFTEACVIYQIVYEEARSYGGDAGRCGFAWKVAGRALRHFYALK 1085
Query: 336 QDDKSLIPCSRSVL 295
+ +++ CS +L
Sbjct: 1086 NEGDTVL-CSLPLL 1098
>sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
Length = 1183
Score = 783 bits (2022), Expect = 0.0
Identities = 438/929 (47%), Positives = 588/929 (63%), Gaps = 58/929 (6%)
Frame = -1
Query: 2907 PRYVAPSSSG---QSISPQLIALGQLEFRKAFLILSYLG--------------RYKLEET 2779
P + P ++ + +SPQ++ALG+LEFRK F+I +YL K+E+
Sbjct: 260 PPAICPDTTNVLREVVSPQMLALGELEFRKIFMIFAYLSWNKKGVKPPLSTPKSSKIEDV 319
Query: 2778 ISVEFIKQIQWLNMDQFESVVWEELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHL- 2602
+SV+ I+ ++ ++M QFES +W I + +YHC+V++ G
Sbjct: 320 LSVDSIRSLKSMSMAQFESRIWSTFGHDNISSSDRAKNLDSGPGMSKVYHCNVEIRGGTV 379
Query: 2601 --IFKGPYLQLQRTHMQRVLGDDNVLLVKFAEEMNIGKGSHA-FQGYESIYHKVAQEGIL 2431
IFKGPY++ +RTH+Q+VLGDDNVL+VKF M I + Y YHKVA+EGI+
Sbjct: 380 VKIFKGPYIENRRTHLQKVLGDDNVLVVKF---MEISSDTETDLSTYLEHYHKVAEEGIV 436
Query: 2430 VGLRRYQFFVYKDGGXXXXXXXXXSP---------VKCYFVRMESNWIADQEKPYILSDK 2278
+GLR Y+FF+YKDGG V+CYFVR ES W D+ PYILS +
Sbjct: 437 LGLRCYRFFLYKDGGKENKMKEENREEENKKCTSSVRCYFVRTESGWNMDE--PYILSGR 494
Query: 2277 FIHESRAVFMHVHTVSSLSKYMARFSLILSKTMKLDIDLASVHVEMIDDIVCVDDDGNIS 2098
I ++R +FMH+ TV +L+KYM RF+LI+SKT+ LD+DL+ V V++IDD C+D+ G
Sbjct: 495 TIGQARDLFMHIRTVLTLAKYMLRFALIVSKTITLDVDLSEVLVKLIDDEPCLDEHGKEV 554
Query: 2097 YDENGEPLIHTDGTGFISEDIALKCPHHIFKGKCLTPMSNQFLDGSEIAEEPLNITKSLT 1918
+ +GE LIHTDGTG ISED+A KC + KGK L P S++ + + T
Sbjct: 555 F-RDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQDIVDCAASKL------MGSNNT 607
Query: 1917 SEAPLLIQFRLFNKGAAFKGTLLLNKLLPPRTIQVRPSMRKVKS---------------- 1786
+E PLLIQ RLF G+A KGT+L++K LPPRTI +RPSM K+K+
Sbjct: 608 TEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIV 667
Query: 1785 -----DASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFLELLKNALDD 1621
S S +QS NS EIV+TSNR RT S LIALLHYGGVP E+F+ELL+ A+++
Sbjct: 668 SARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEE 727
Query: 1620 AQNARYTKLAAIRVSLKYGDMDDFLVSRMILCGIPLEEPYMQFRLSVLMKEERKGLKAGK 1441
A NAR+ A+ ++ Y DM+D + +RMIL GIPLEE Y+Q RL L ERKG+K GK
Sbjct: 728 ADNARFDYAGALNIAFNYADMEDSMPARMILSGIPLEESYLQSRLDFLSLLERKGIKNGK 787
Query: 1440 LPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIHVLSARYIKE 1261
+P+ DCYYLMGT DPTG L PNEVCV+L+ GQ+SGDVLVYK+PGLH GDIHVL A Y +
Sbjct: 788 IPIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVLKATYSSD 847
Query: 1260 LELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSSKPWVPMSST 1081
+E VG+SK+AI FPT G RSLADEMANSDFDGD+YWVS N +LL +F+ SKPWVP +
Sbjct: 848 IEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITP 907
Query: 1080 AGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLLTLSDDCAXXX 901
G +QKGP D + ELE+ LF +FL RF PSY + AA WL YMDRLLT+S D
Sbjct: 908 NGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLD-ESEK 966
Query: 900 XXXXXXXXXLVDIYYDAVDAPKSGLKVDVPPELKADKYPHYMEKLKSDSYTSTSILGLIF 721
LVD+YY A+DAPK G KV++P +L +YPH+M+ +S SY S+SILG I+
Sbjct: 967 KLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMD--RSPSYHSSSILGKIY 1024
Query: 720 NKAGS---VQTEDNQFNGISKLSCFSR--YSESGLSLWKPRYTNYLSEMAQALEHEI-EE 559
+KAG +++++ Q IS L CF+ + LW+ RY YL++ + E EE
Sbjct: 1025 DKAGDPKPLRSDNVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEADEE 1084
Query: 558 FKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYAQ-MGGVGRCSFA 382
K+ ++ +KYK +LY A+EFE++PR DD+F EA AIY +AY+ A+ V RC FA
Sbjct: 1085 EKKIKFQELYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFA 1144
Query: 381 WNVAGRALCMLHASKQDDKSLIPCSRSVL 295
W VAGRALC + K + +++ CS +L
Sbjct: 1145 WKVAGRALCHFYTVKNEGNAVV-CSLQLL 1172
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 780 bits (2015), Expect = 0.0
Identities = 440/953 (46%), Positives = 600/953 (62%), Gaps = 25/953 (2%)
Frame = -1
Query: 3063 RRIRNFSGFILYMANNFRPIPTQESFADT---LPSGSSSPLR---SCGVCSEESLQSD-- 2908
R++ + ++Y ++F ++ + T P+ S SP S + E S+ SD
Sbjct: 53 RKVFSLQAGLIYNLDSFIVSKVNQAVSFTGYPQPANSLSPSGRHVSRVLQEEMSVDSDAP 112
Query: 2907 -PRYVAPSSSGQSIS-PQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMD 2734
P+ + G S+ PQL+ALG+LEF+K FL+LSY+ + + I+ + I+ + L M
Sbjct: 113 SPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITADEIRLWKDLPMV 172
Query: 2733 QFESVVWEELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFK------GPYLQLQ 2572
++E+ VW+ L P K H Y C+V G FK GP L+
Sbjct: 173 EYEAAVWDRLGRHYCPQ-KDRRMLQWDSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHT 231
Query: 2571 RTHMQRVLGDDNVLLVKFAEEMNIGKGSHAFQ-GYESIYHKVAQEGILVGLRRYQFFVYK 2395
TH+ +VLGDDNVL VKFA+ + K S + + Y +A+ GI++GLRRYQFFV+K
Sbjct: 232 GTHLHKVLGDDNVLTVKFAD---VQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFK 288
Query: 2394 DGGXXXXXXXXXSP-VKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSK 2218
DGG + VKCYF+R +S D + PYIL+ K I+E+R FMHVH +L+
Sbjct: 289 DGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLAN 348
Query: 2217 YMARFSLILSKTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISED 2038
YMARFSLILSKT L++D+ + + IDDI C D DG D+N +P IH+DGTG+ISED
Sbjct: 349 YMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISED 408
Query: 2037 IALKCPHHIFKGKCLTPMSNQFLDGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKG 1858
+A CP +IFKGKCL S I ++ + PLLIQFR+F G A KG
Sbjct: 409 LARMCPLNIFKGKCLRSES---------------IQEACYQDPPLLIQFRMFYDGYAVKG 453
Query: 1857 TLLLNKLLPPRTIQVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLH 1678
T LLNK L PRT+QVRPSM KV D S S + N+LE+V TSN PKRT LS+ L+ALL
Sbjct: 454 TFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLS 513
Query: 1677 YGGVPNEYFLELLKNALDDAQNARYTKLAAIRVSLKYGDMDDFLVSRMILCGIPLEEPYM 1498
YGG+PNE+FL++L N L+++++ Y K AA+ +L YG+MDD ++MIL GIPL+EP++
Sbjct: 514 YGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGIPLDEPHL 573
Query: 1497 QFRLSVLMKEERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYK 1318
+ LS+L+K E+ LKAGKLPVT+ YYLMGTVDPTG LK +EVCV+LE+GQISG+VLVY+
Sbjct: 574 KNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYR 633
Query: 1317 HPGLHFGDIHVLSARYIKELELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRN 1138
+PGLHFGDIH+L A Y+K LE +VG+SK+A+FFP KG RSL DE+A DFDGDMY++SRN
Sbjct: 634 NPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRN 693
Query: 1137 SQLLRYFRSSKPWV----PMSSTAGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISV 970
+LL F+ S+PWV P S +G + P L+ ELE++LF+ FL F S I +
Sbjct: 694 PELLENFKPSEPWVSLTPPSKSNSG---RAPSQLSPEELEEELFEMFLTAGFHASNVIGI 750
Query: 969 AADCWLSYMDRLLTLSDDCAXXXXXXXXXXXXLVDIYYDAVDAPKSGLKVDVPPELKADK 790
AAD WL+ MDR L L DD A L+DIYYDA+DAPK G KV +P +LK D
Sbjct: 751 AADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDI 810
Query: 789 YPHYMEKLKSDSYTSTSILGLIFNKAGSVQTED-NQFNGISKLSCFSRYSESGLSLWKPR 613
+PHYME+ K + STSILGLIF+ S TE+ + + ISKL CF S + K R
Sbjct: 811 FPHYMERDK--KFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCR 868
Query: 612 --YTNYLSEMAQALEHEIEEFKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAI 439
Y NY +EM QA++ + K+E A+++I++YK Y AA FEDS + ++++ +ALA+
Sbjct: 869 LWYDNYRTEMTQAMKTD----KDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALAL 924
Query: 438 YNLAYDYAQMGGVGRCSFAWNVAGRALCMLHASKQDDKSLIPCSRSVLTEILG 280
Y + YDYA GV +C F W VAG LC + +K+ + + C+ SVL E+ G
Sbjct: 925 YKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKELWG 977
>sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
Length = 1153
Score = 778 bits (2010), Expect = 0.0
Identities = 424/901 (47%), Positives = 572/901 (63%), Gaps = 40/901 (4%)
Frame = -1
Query: 2877 QSISPQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFESVVWEELRS 2698
++ SPQ++AL +L FRK F++ +YL K+E +SV++I+ +++L+M QFES +W
Sbjct: 286 EAASPQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMAQFESQIWRTFGH 345
Query: 2697 KCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHL---IFKGPYLQLQRTHMQRVLGDDNVLL 2527
K I +YHC+V + G IFKGPY++ RTH+Q+V+GDDNVL+
Sbjct: 346 KYIAASDRAKNLDSDPGMTKVYHCNVAIRGDTVVKIFKGPYIENTRTHLQKVVGDDNVLV 405
Query: 2526 VKFAEEMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXXXXXXS--- 2356
VKF +++ K F Y YHKVA++GI++GLRRY+FFVYKDGG
Sbjct: 406 VKFMGKLSDTKTD--FSTYCEHYHKVAEDGIVLGLRRYRFFVYKDGGKEEKLKQEKIEDK 463
Query: 2355 -----PVKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLIL 2191
PV CYFVR ES W D+ PYILS + + ++R +FMH+ + +L+KYMARF+LIL
Sbjct: 464 NKCTSPVMCYFVRTESGWNMDE--PYILSGRTVGQARELFMHISSAPTLAKYMARFALIL 521
Query: 2190 SKTMKLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHI 2011
SKT+ D DL++V+V I D C+D GN+ + + EPLIHTDGTG +S D+AL CP I
Sbjct: 522 SKTITWDADLSAVYVRRIKDEPCMDRHGNVVHKDQ-EPLIHTDGTGLVSVDLALNCPTSI 580
Query: 2010 FKGKCLTPMSNQFLDGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLP 1831
FKGK L P PLL+QFRLF G+A KGT+L+++ LP
Sbjct: 581 FKGKFLKPQ-------------------------PLLMQFRLFYNGSAVKGTVLVDRRLP 615
Query: 1830 PRTIQVRPSMRKVKSDA---------------------SFSYIQSCNSLEIVATSNRPKR 1714
P TI +RPSM K+++ S S +QS NS EIV+TSNRP+R
Sbjct: 616 PATILIRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSFEIVSTSNRPRR 675
Query: 1713 TCLSRYLIALLHYGGVPNEYFLELLKNALDDAQNARYTKLAAIRVSLKYGDMDDFLVSRM 1534
T SR+LI LL YGGVP EYFLELL++A++ A+NA Y A+R++ Y DM+D + +RM
Sbjct: 676 TLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSYADMEDSMSARM 735
Query: 1533 ILCGIPLEEPYMQFRLSVLMKEERKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLE 1354
IL GIPLEE Y+Q RL + ++ERKG+K GK+P+ +CYYLM T DPTG L+PNEVCV+LE
Sbjct: 736 ILSGIPLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVILE 795
Query: 1353 NGQISGDVLVYKHPGLHFGDIHVLSARYIKELEL-FVGDSKYAIFFPTKGSRSLADEMAN 1177
NGQ SGDVLVYKHPGLHFGDIHVL A YI++LE +VG +KYAI FP G RSLADEMAN
Sbjct: 796 NGQFSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMAN 855
Query: 1176 SDFDGDMYWVSRNSQLLRYFRSSKPWVPMSSTAGVQQKGPLDLTDRELEKKLFDQFLANR 997
SDFDGD+YWVS+N +LL +F+ S+PWV +QK P D + +LE+ LF +FL R
Sbjct: 856 SDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTR 915
Query: 996 FKPSYTISVAADCWLSYMDRLLTLSDDCAXXXXXXXXXXXXLVDIYYDAVDAPKSGLKVD 817
F PS+ + AAD WL+YMDRLLT S D LVD+YY A+DAPK+G KV+
Sbjct: 916 FTPSFALGTAADSWLAYMDRLLTDSLD-EIEKKLIEEKMLKLVDLYYLALDAPKTGNKVN 974
Query: 816 VPPELKADKYPHYMEKLKSDSYTSTSILGLIFNKAGSVQTEDN---QFNGISKLSCFSRY 646
+P +L +YPH+M +S SY S+SILG I++KA V++ + Q G+S L CF
Sbjct: 975 IPSDLMVKQYPHFMG--RSFSYHSSSILGQIYDKAEDVESLRSCNVQPIGVSLLPCFMER 1032
Query: 645 S--ESGLSLWKPRYTNYLSEMAQALEHEIEEFKEEMA-DDIIKKYKWMLYEAAEFEDSPR 475
+ LW+ RY YL++ +++ + M ++ +KYK MLY+A+EFE + R
Sbjct: 1033 EAPPAARHLWQHRYEEYLTDSTMLYRAMVDKEERNMKFQELYEKYKHMLYDASEFEQTQR 1092
Query: 474 KRDDIFEEALAIYNLAYDYAQMGG-VGRCSFAWNVAGRALCMLHASKQDDKSLIPCSRSV 298
DD+F EA IY + Y+ A+ RC FAW VAGRALC +A K + + + CS +
Sbjct: 1093 DPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHFYALKNEGDTAL-CSLPL 1151
Query: 297 L 295
L
Sbjct: 1152 L 1152
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 778 bits (2009), Expect = 0.0
Identities = 440/878 (50%), Positives = 571/878 (65%), Gaps = 8/878 (0%)
Frame = -1
Query: 2892 PSSSGQSISPQLIALGQLEFRKAFLILSYLGRYKLEETISVEFIKQIQWLNMDQFESVVW 2713
P G++ L ALG+LE+R+ FLILSY G KL + I E I+ + L M FES VW
Sbjct: 540 PEDHGEA---HLAALGELEYRRQFLILSYAGGMKLRDLIVAEAIRHWKDLPMVMFESTVW 596
Query: 2712 EELRSKCIPLLXXXXXXXXXXXKAHIYHCHVDLEGHLIFKGPYL-QLQRTHMQRVLGDDN 2536
E L KCI H+YHC+V+++G FKGPYL +++RT +Q+ LGDDN
Sbjct: 597 EHLGRKCISTEDRRLYFDWDSGSTHVYHCYVNVDGSYRFKGPYLYKIRRTLLQKELGDDN 656
Query: 2535 VLLVKFAEEMNIGKGSHAFQGYESIYHKVAQEGILVGLRRYQFFVYKDGGXXXXXXXXXS 2356
VL+VKFA+E S A Y + Y KVA+EGILVGLRRY+FFV+KDGG S
Sbjct: 657 VLMVKFAKEEVQRGQSGACHNYPT-YMKVAREGILVGLRRYRFFVFKDGGNEEKKKNPTS 715
Query: 2355 -PVKCYFVRMESNWIADQEKPYILSDKFIHESRAVFMHVHTVSSLSKYMARFSLILSKTM 2179
PVKCYFVR+ S+ D+ Y LS ++E+R +FMH HT++S+ YMARFSLILSKTM
Sbjct: 716 SPVKCYFVRVASDAAIDKGVYYRLSHMTMYEARCLFMHAHTLASIDNYMARFSLILSKTM 775
Query: 2178 KLDIDLASVHVEMIDDIVCVDDDGNISYDENGEPLIHTDGTGFISEDIALKCPHHIFKGK 1999
L D + V VE+ID+ C+D+ GN Y + +PLIHTDGTGFISED+AL CP KG+
Sbjct: 776 SLKADWSLVKVEIIDEEYCLDESGNCIYRDE-KPLIHTDGTGFISEDLALLCPKIEAKGQ 834
Query: 1998 CLTPMSNQFL-DGSEIAEEPLNITKSLTSEAPLLIQFRLFNKGAAFKGTLLLNKLLPPRT 1822
++ + L D E+ + N T E PLLIQ RLF+ G+A KGTLL+NK L P
Sbjct: 835 WISDEHMKGLPDPDELDDTGKNRAGLRTEEPPLLIQCRLFHNGSASKGTLLVNKKLQPNR 894
Query: 1821 IQVRPSMRKVKSDASFSYIQSCNSLEIVATSNRPKRTCLSRYLIALLHYGGVPNEYFLEL 1642
IQ+RPSM KVK+D S Q+ NSLEIV TS P+ T LSR LIALL +GGVP E+F+++
Sbjct: 895 IQIRPSMLKVKTDPVISNNQTLNSLEIVGTSTPPRNTHLSRILIALLVHGGVPEEFFMQI 954
Query: 1641 LKNALDDAQNARYTKLAAIRVSLKYGDMDD-FLVSRMILCGIPLEEPYMQFRLSVLMKEE 1465
L AL+D+ K AA++V+ KYG+MDD FL MI GIPLEE Y+++RLSVLMKEE
Sbjct: 955 LNKALEDSHGVFCKKRAALKVAEKYGEMDDNFLGRLMISFGIPLEESYLRYRLSVLMKEE 1014
Query: 1464 RKGLKAGKLPVTDCYYLMGTVDPTGLLKPNEVCVVLENGQISGDVLVYKHPGLHFGDIHV 1285
L+ G+L + D Y LMGT DPTG LK +EVC +GQ+SG VLVY++PGLH GDIHV
Sbjct: 1015 NNSLRKGRLYIPDSYNLMGTADPTGTLKEDEVC----DGQLSGKVLVYRYPGLHIGDIHV 1070
Query: 1284 LSARYIKELELFVGDSKYAIFFPTKGSRSLADEMANSDFDGDMYWVSRNSQLLRYFRSSK 1105
L A Y+KE+E VG++KY IFF KG RS+ADEM DFDGD+YWVSRN QLL +++ S+
Sbjct: 1071 LKATYVKEIEYIVGNAKYGIFFSCKGPRSIADEMGGGDFDGDLYWVSRNPQLLEWYKPSE 1130
Query: 1104 PWVPMS-STAGVQQKGPLDLTDRELEKKLFDQFLANRFKPSYTISVAADCWLSYMDRLLT 928
PW+ S ST + P D + +LE LF FL RF+PS+ +S AAD WL++MD LT
Sbjct: 1131 PWIEASISTKKNPSRCPSDHSPEDLEDVLFRSFLTTRFEPSFAMSEAADNWLAWMDHFLT 1190
Query: 927 LSDDCAXXXXXXXXXXXXLVDIYYDAVDAPKSGLKVDVPPELKADKYPHYMEKLKSDSYT 748
L D LVD+YY A+DA K G+KVDVP ELK +PHYM K+ SY
Sbjct: 1191 LGDSNIHEKNNVKEKILQLVDLYYTALDAAKKGVKVDVPKELKVSCFPHYMG--KNRSYP 1248
Query: 747 STSILGLIFNKAGSVQTEDNQFNGISKLSCF--SRYSESGLSLWKPRYTNYLSEMAQALE 574
STSILG I+N+ QTED + KL F + ++ L W + Y EMA AL+
Sbjct: 1249 STSILGSIYNRVDEHQTEDRSLKEVEKLPAFDENEVPDACLDKWAELHRQYRKEMASALD 1308
Query: 573 HEIEEFKEEMADDIIKKYKWMLYEAAEFEDSPRKRDDIFEEALAIYNLAYDYA-QMGGVG 397
+ ++ K + AD +I+KY+ +LYEA +FE+S R ++I+ EA AIY++ YD+A ++G V
Sbjct: 1309 DDDKQSKNQSADVVIRKYRKILYEANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGNVK 1368
Query: 396 RCSFAWNVAGRALCMLHASKQDDKSLIPCSRSVLTEIL 283
CSFAW VAG+ALC LHA +++ S SVL EIL
Sbjct: 1369 VCSFAWRVAGKALCQLHARNNNERFCTIVS-SVLMEIL 1405