BLASTX nr result
ID: Zingiber25_contig00009639
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00009639
(439 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 175 6e-42
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 162 3e-38
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 162 4e-38
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 162 4e-38
ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III s... 162 6e-38
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 162 6e-38
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 159 5e-37
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s... 158 8e-37
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 158 8e-37
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 157 2e-36
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 155 7e-36
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 152 3e-35
gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Tri... 149 3e-34
gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 148 6e-34
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s... 144 2e-32
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 142 6e-32
ref|XP_004306240.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 139 4e-31
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 138 7e-31
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao] 126 3e-27
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 126 3e-27
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 175 bits (443), Expect = 6e-42
Identities = 91/146 (62%), Positives = 108/146 (73%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP+EIS V+DRL+KHDM+PE GCS FK LS+F++KR+ A + TR L L+E V +
Sbjct: 932 LSPSEISTIVNDRLSKHDMTPERGCSMAFKEELSNFIKKRMDAIKKTRNMLGLDEDCVDK 991
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
+ LE+VAANISGIS +QL VFLETCISRYH KR+E EPGTQMTL
Sbjct: 992 EKFSGLEHVAANISGISRQQLRVFLETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTL 1051
Query: 362 KTFHFAGVASMNVTLGVPRIKEIINA 439
KTFHFAGVASMN+TLGVPRIKEI+ A
Sbjct: 1052 KTFHFAGVASMNITLGVPRIKEILGA 1077
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 162 bits (411), Expect = 3e-38
Identities = 85/146 (58%), Positives = 108/146 (73%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP EI ++D+L++HD S + GCS+ FK+ L DF++ R+ + TR+AL L+E VG
Sbjct: 943 LSPGEILQILNDKLSEHDASSDDGCSEKFKQLLKDFLEDRIKLLKSTRRALCLDENHVG- 1001
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
K + E++AANISGIS +QL+VFL+TC+SRYHSK++E EPGTQMTL
Sbjct: 1002 KDSSIEESIAANISGISAKQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTL 1061
Query: 362 KTFHFAGVASMNVTLGVPRIKEIINA 439
KTFHFAGVASMNVTLGVPRIKEIINA
Sbjct: 1062 KTFHFAGVASMNVTLGVPRIKEIINA 1087
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 162 bits (410), Expect = 4e-38
Identities = 83/146 (56%), Positives = 108/146 (73%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP EI ++D+L++HD S + GCS+ FK+ L+ F++ R+ + TR+AL L+E VGE
Sbjct: 870 LSPGEILQILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGE 929
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
+ + E++AANISGIS +QL+VFL+TC+SRYH K++E EPGTQMTL
Sbjct: 930 RHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTL 989
Query: 362 KTFHFAGVASMNVTLGVPRIKEIINA 439
KTFHFAGVASMNVTLGVPRIKEIINA
Sbjct: 990 KTFHFAGVASMNVTLGVPRIKEIINA 1015
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 162 bits (410), Expect = 4e-38
Identities = 83/146 (56%), Positives = 108/146 (73%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP EI ++D+L++HD S + GCS+ FK+ L+ F++ R+ + TR+AL L+E VGE
Sbjct: 932 LSPGEILQILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGE 991
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
+ + E++AANISGIS +QL+VFL+TC+SRYH K++E EPGTQMTL
Sbjct: 992 RHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTL 1051
Query: 362 KTFHFAGVASMNVTLGVPRIKEIINA 439
KTFHFAGVASMNVTLGVPRIKEIINA
Sbjct: 1052 KTFHFAGVASMNVTLGVPRIKEIINA 1077
>ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Fragaria vesca subsp. vesca]
Length = 1390
Score = 162 bits (409), Expect = 6e-38
Identities = 82/145 (56%), Positives = 103/145 (71%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP E+S V RL++ DM+P+GGCS FK S+ F+ + V A T++A LN++ E
Sbjct: 940 LSPDEVSEIVRSRLSEQDMTPDGGCSMGFKSSIEQFLDEYVKALRKTQEAFLLNQSPGWE 999
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
+ L+N+ NISG++PRQL+VFL+TCISRYHSK+V+ EPGTQMTL
Sbjct: 1000 VKSATLQNIVQNISGVTPRQLKVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPGTQMTL 1059
Query: 362 KTFHFAGVASMNVTLGVPRIKEIIN 436
KTFHFAGVASMNVTLGVPRIKEIIN
Sbjct: 1060 KTFHFAGVASMNVTLGVPRIKEIIN 1084
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 162 bits (409), Expect = 6e-38
Identities = 83/146 (56%), Positives = 107/146 (73%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP I ++D+L +HD S +GGCS+ FK++L++F+ KR+ + TR+AL L+E V +
Sbjct: 939 LSPEAIKQMLEDKLLQHDTSSDGGCSEEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEK 998
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
K + E+VAA ISGIS +QL+VFL+TC+SRY SK++E EPGTQMTL
Sbjct: 999 KDSCVEESVAAIISGISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTL 1058
Query: 362 KTFHFAGVASMNVTLGVPRIKEIINA 439
KTFHFAGVASMNVTLGVPRIKEIINA
Sbjct: 1059 KTFHFAGVASMNVTLGVPRIKEIINA 1084
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 159 bits (401), Expect = 5e-37
Identities = 82/146 (56%), Positives = 103/146 (70%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP +I ++D+L +H S +GGCS+ FK L F+++R+ + TRKAL L+E VG+
Sbjct: 945 LSPDDIKQMLEDKLTQHKTSSDGGCSEEFKECLKKFLEERIQLLKCTRKALHLDEKHVGK 1004
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
+ E +AANISGIS +QL+VFL+TC SRY+SK +E EPGTQMTL
Sbjct: 1005 NDSCIEEIIAANISGISAKQLQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTL 1064
Query: 362 KTFHFAGVASMNVTLGVPRIKEIINA 439
KTFHFAGVASMNVTLGVPRIKEIINA
Sbjct: 1065 KTFHFAGVASMNVTLGVPRIKEIINA 1090
>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X2 [Solanum tuberosum]
Length = 1243
Score = 158 bits (399), Expect = 8e-37
Identities = 86/147 (58%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVT-AWEYTRKALQLNEAVVG 178
LS +EI V++RL+ HDM+PEGGCS+ F+ SLSDF+ K + + R++L L E
Sbjct: 933 LSYSEICEIVNERLSYHDMTPEGGCSEAFRSSLSDFLIKNLAETLKNLRESLLLGEEQYE 992
Query: 179 EKCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMT 358
G LE +A NISGI+ RQL+VFL TCISRYH KR+E EPGTQMT
Sbjct: 993 GDDRGYLEKIALNISGITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMT 1052
Query: 359 LKTFHFAGVASMNVTLGVPRIKEIINA 439
LKTFHFAGVASMNVTLGVPRIKEIINA
Sbjct: 1053 LKTFHFAGVASMNVTLGVPRIKEIINA 1079
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Solanum tuberosum]
Length = 1394
Score = 158 bits (399), Expect = 8e-37
Identities = 86/147 (58%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVT-AWEYTRKALQLNEAVVG 178
LS +EI V++RL+ HDM+PEGGCS+ F+ SLSDF+ K + + R++L L E
Sbjct: 933 LSYSEICEIVNERLSYHDMTPEGGCSEAFRSSLSDFLIKNLAETLKNLRESLLLGEEQYE 992
Query: 179 EKCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMT 358
G LE +A NISGI+ RQL+VFL TCISRYH KR+E EPGTQMT
Sbjct: 993 GDDRGYLEKIALNISGITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMT 1052
Query: 359 LKTFHFAGVASMNVTLGVPRIKEIINA 439
LKTFHFAGVASMNVTLGVPRIKEIINA
Sbjct: 1053 LKTFHFAGVASMNVTLGVPRIKEIINA 1079
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 157 bits (396), Expect = 2e-36
Identities = 84/146 (57%), Positives = 101/146 (69%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP I ++D+L++ DMS GGCSD FK L+ F + R+ TR+ L L+E VG
Sbjct: 939 LSPEAIMQMLNDKLSEQDMS-SGGCSDKFKELLTKFFEDRIKMLRSTRRTLHLDEDHVGM 997
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
K + E +AANISGIS +QL+VFL+TC+SRYHSK +E EPGTQMTL
Sbjct: 998 KDSSIEERIAANISGISAKQLQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTL 1057
Query: 362 KTFHFAGVASMNVTLGVPRIKEIINA 439
KTFHFAGVASMNVTLGVPRIKEIINA
Sbjct: 1058 KTFHFAGVASMNVTLGVPRIKEIINA 1083
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
lycopersicum]
Length = 1390
Score = 155 bits (391), Expect = 7e-36
Identities = 84/147 (57%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVT-AWEYTRKALQLNEAVVG 178
LS +EI V++RL+ HDM+PEGGCS+ F+ SLSDF+ K + + R++L L E
Sbjct: 933 LSYSEICEIVNERLSYHDMTPEGGCSEAFRASLSDFLIKSLAETLKNLRESLLLGEEQYE 992
Query: 179 EKCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMT 358
G LE + NISGI+ +QL+VFL TCISRYH KR+E EPGTQMT
Sbjct: 993 GDDRGYLEKIVLNISGITKKQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMT 1052
Query: 359 LKTFHFAGVASMNVTLGVPRIKEIINA 439
LKTFHFAGVASMNVTLGVPRIKEIINA
Sbjct: 1053 LKTFHFAGVASMNVTLGVPRIKEIINA 1079
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 152 bits (385), Expect = 3e-35
Identities = 78/145 (53%), Positives = 96/145 (66%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP ++S V+ RL+K DM+PEGGCS FK SL F+ V A++ T + E
Sbjct: 724 LSPEKVSELVESRLSKKDMTPEGGCSAAFKNSLKSFLDNYVKAFKRTWDPCESTEGHAKM 783
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
+ + +N+ +SG + RQLEVFL+TCISRYHSK++E EPGTQMTL
Sbjct: 784 ENSATTKNIVLQLSGATARQLEVFLDTCISRYHSKKIEAGTAIGAIGAQSIGEPGTQMTL 843
Query: 362 KTFHFAGVASMNVTLGVPRIKEIIN 436
KTFHFAGVASMNVTLGVPRIKEIIN
Sbjct: 844 KTFHFAGVASMNVTLGVPRIKEIIN 868
>gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Triticum urartu]
Length = 1248
Score = 149 bits (377), Expect = 3e-34
Identities = 86/152 (56%), Positives = 102/152 (67%), Gaps = 6/152 (3%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP IS ++D+L++ D S GGCSD FK L+ FV R+ TR+AL L+E VG
Sbjct: 788 LSPEAISQMLNDKLSEQDPSA-GGCSDRFKELLTKFVGNRIKMLRNTRRALHLDEDHVGR 846
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
K + E VAANISGIS +QL+VFL+TC+SRYHSK +E EPGTQMTL
Sbjct: 847 KDSSIEECVAANISGISAKQLQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTL 906
Query: 362 KTFHFAGVASMN------VTLGVPRIKEIINA 439
KTFHFAGVASM+ VTLGVPRIKEIINA
Sbjct: 907 KTFHFAGVASMSILSVLYVTLGVPRIKEIINA 938
>gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1117
Score = 148 bits (374), Expect = 6e-34
Identities = 85/152 (55%), Positives = 102/152 (67%), Gaps = 6/152 (3%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP IS ++D+L++ D S GGCSD FK L+ FV R+ TR+AL L+E VG
Sbjct: 657 LSPEAISQMLNDKLSEQDPSA-GGCSDRFKELLTKFVGNRIKMLRNTRRALHLDEDHVGR 715
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
K + E VAANISGI+ +QL+VFL+TC+SRYHSK +E EPGTQMTL
Sbjct: 716 KDSSIEECVAANISGIAAKQLQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTL 775
Query: 362 KTFHFAGVASMN------VTLGVPRIKEIINA 439
KTFHFAGVASM+ VTLGVPRIKEIINA
Sbjct: 776 KTFHFAGVASMSILSVLYVTLGVPRIKEIINA 807
>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 144 bits (362), Expect = 2e-32
Identities = 80/146 (54%), Positives = 96/146 (65%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP I +D L K + S G CSD K L+ F++ RV TR+AL ++E VG
Sbjct: 942 LSPDVILQMFNDTLFKQETS-SGRCSDKLKEMLTKFLEDRVKMLRSTRRALHIDEDHVGR 1000
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
+ + E +AA+ISGIS +QL+VFL+TC SRYHSK +E EPGTQMTL
Sbjct: 1001 RDSSVEECIAADISGISAKQLQVFLDTCFSRYHSKIIEAGASVGPIGAHSIGEPGTQMTL 1060
Query: 362 KTFHFAGVASMNVTLGVPRIKEIINA 439
KTFHFAGVASMNVTLGVPRIKEIINA
Sbjct: 1061 KTFHFAGVASMNVTLGVPRIKEIINA 1086
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 142 bits (357), Expect = 6e-32
Identities = 80/154 (51%), Positives = 99/154 (64%), Gaps = 9/154 (5%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQL-NEAVVG 178
LSP+E S V+DRL+K D SPE GCS F SL F+ K V A + + L NE+ V
Sbjct: 938 LSPSEFSETVEDRLSKDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVD 997
Query: 179 EKCAGALEN--------VAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXX 334
+ + +N V NI+G++ RQL+VFL+TC+SRYH+K++E
Sbjct: 998 KSIISSSDNDNIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSI 1057
Query: 335 XEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 436
EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN
Sbjct: 1058 GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1091
>ref|XP_004306240.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like [Fragaria vesca subsp. vesca]
Length = 1379
Score = 139 bits (350), Expect = 4e-31
Identities = 75/145 (51%), Positives = 94/145 (64%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP ++ V RL++ DM PE G S FK S+ F+ + V T + L LN++ E
Sbjct: 916 LSPEQVYEVVRSRLSEQDMIPEDGLSMGFKSSIEKFLDEYVKTPSKTHENLMLNQSTGWE 975
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
+ LE + +ISG++ RQLEVFL+TCISRYHSKR++ EP TQMTL
Sbjct: 976 VKSETLEKIVKSISGVTSRQLEVFLDTCISRYHSKRIDAGTAIGAIGAQSIGEPVTQMTL 1035
Query: 362 KTFHFAGVASMNVTLGVPRIKEIIN 436
KTFHFAGVASMNVTLGVPRIKEII+
Sbjct: 1036 KTFHFAGVASMNVTLGVPRIKEIID 1060
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 138 bits (348), Expect = 7e-31
Identities = 80/145 (55%), Positives = 97/145 (66%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LS +I V RL +H+ S EG CSD FK +LS F+++ ++ TR+AL L+ VGE
Sbjct: 938 LSALQIEETVK-RLKEHNTSAEG-CSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGE 995
Query: 182 KCAGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTL 361
+ E A NISGI+ +QL+VFL+TCISRY KR+E EPGTQMTL
Sbjct: 996 ENLDIQEKFAKNISGITSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTL 1055
Query: 362 KTFHFAGVASMNVTLGVPRIKEIIN 436
KTFHFAGVASMNVTLGVPRIKEIIN
Sbjct: 1056 KTFHFAGVASMNVTLGVPRIKEIIN 1080
>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
Length = 1395
Score = 126 bits (317), Expect = 3e-27
Identities = 74/141 (52%), Positives = 88/141 (62%)
Frame = +2
Query: 17 ISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGEKCAGA 196
I ++++LAKHD P G CS+ FK+SL F++ + + K + N A E
Sbjct: 949 IMQMLEEQLAKHD--PAGVCSEAFKKSLKGFLKSQTNELDRVMKLVN-NCAQKSE----I 1001
Query: 197 LENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXXEPGTQMTLKTFHF 376
LE V ISGIS RQLEVF+ TCISRY SK +E EPGTQMTLKTFHF
Sbjct: 1002 LEKVGHKISGISDRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHF 1061
Query: 377 AGVASMNVTLGVPRIKEIINA 439
AGVASMN+T GVPRIKEIINA
Sbjct: 1062 AGVASMNITQGVPRIKEIINA 1082
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 126 bits (317), Expect = 3e-27
Identities = 73/153 (47%), Positives = 91/153 (59%), Gaps = 8/153 (5%)
Frame = +2
Query: 2 LSPTEISNFVDDRLAKHDMSPEGGCSDCFKRSLSDFVQKRVTAWEYTRKALQLNEAVVGE 181
LSP +IS+ V++ L KHDM+ G CS+ FK+SL+ F+ E K E E
Sbjct: 919 LSPLDISDVVENLLLKHDMALGGICSEAFKKSLTSFLGSHAKRLESMMKLADGVEDPTSE 978
Query: 182 KC--------AGALENVAANISGISPRQLEVFLETCISRYHSKRVEXXXXXXXXXXXXXX 337
+ +E +A I G+S RQ+EVF++TCI+RY KRVE
Sbjct: 979 NIQTGGIRGNSKIIERLAHKIFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIG 1038
Query: 338 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 436
EPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN
Sbjct: 1039 EPGTQMTLKTFHFAGVASMNITQGVPRIKEIIN 1071