BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00008957
         (2783 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   932   0.0  
ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ...   928   0.0  
emb|CBI28783.3| unnamed protein product [Vitis vinifera]              927   0.0  
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b...   920   0.0  
ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [S...   918   0.0  
ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g...   916   0.0  
gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indi...   915   0.0  
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca...   914   0.0  
ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform ...   913   0.0  
ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|A...   903   0.0  
ref|XP_002317355.1| DNA topoisomerase family protein [Populus tr...   900   0.0  
gb|AFW61219.1| DNA topoisomerase I [Zea mays]                         899   0.0  
gb|ACL52396.1| unknown [Zea mays]                                     899   0.0  
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr...   898   0.0  
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 893   0.0  
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]                891   0.0  
gb|EMJ02410.1| hypothetical protein PRUPE_ppa001622mg [Prunus pe...   888   0.0  
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]       887   0.0  
gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]                885   0.0  
gb|EMS46223.1| DNA topoisomerase 1 [Triticum urartu]                  884   0.0  

>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  932 bits (2410), Expect = 0.0
 Identities = 501/801 (62%), Positives = 563/801 (70%), Gaps = 32/801 (3%)
 Frame = -2

Query: 2740 SKGDNFTSGSAGNMDLSKSNIK--SENSDDDKPLSLKYSSSGIVNRSAS--LQAVKASQS 2573
            SKG N  S S+   + +K  +K  S++S+D+ PL LK         S+S  L +   S  
Sbjct: 91   SKGLNSPSLSSHPPE-TKVGVKESSDDSEDEIPLLLKLQLKSRKGASSSKLLDSKGLSSP 149

Query: 2572 TKPLPLSVKLXXXXXXXXXXXXXXKPLLSRFQSKAIGGSSM-KDSNVAEXXXXXXXXXXX 2396
                P S K                PL S+F+ K   G+S+ K  N  E           
Sbjct: 150  ASSRPQSQKAKVNNKNLSDDSEDEIPLSSKFRLKTGMGASLDKLDNFDEKKPLTSTLKPN 209

Query: 2395 XXXXXXXXXXXXKGGQ-KRPLSGANPADSSSIKXXXXXX--------------------- 2282
                          GQ KRPL  AN +  SS K                           
Sbjct: 210  GISKKDDERVKSPKGQNKRPLGQANTSHHSSSKKPKLLDGSVKGKVKQVSVKAEQKDDDD 269

Query: 2281 -----DNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXX 2117
                 D+++ P  +R+KK+VSS++   SK  +                            
Sbjct: 270  DDNDDDDEYTPTVKRLKKSVSSDNKKASKTKVIPSSRKKATKKAKKSKKLAKSSKYSKST 329

Query: 2116 XMPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTD 1937
             +PP SG GQKWTTLEHNGVIFPPPYKPHGVKMLY G+PVDLTPEQEEVATMFAVMKDTD
Sbjct: 330  KVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKDTD 389

Query: 1936 YASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXX 1757
            YA+K +FIENFM+DWR+ LGKNH+IKKFELCDFTPIYEWH KEKEKKKQMT+        
Sbjct: 390  YATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKALKE 449

Query: 1756 XXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKD 1577
                   KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIGK+
Sbjct: 450  EKLKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIGKE 509

Query: 1576 APIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKA 1397
            AP+PECPIPGERWKE++HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKA
Sbjct: 510  APVPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKA 569

Query: 1396 RLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 1217
            RLLKDYIQNIRA YT+DF +KD  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK
Sbjct: 570  RLLKDYIQNIRATYTKDFTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 629

Query: 1216 VENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXX 1037
            VENV LVPPNKL+FDFLGKDSIRY NTVEVE PVYKAIG F+T K               
Sbjct: 630  VENVALVPPNKLEFDFLGKDSIRYFNTVEVELPVYKAIGQFKTGKSGG-------DDLFD 682

Query: 1036 XXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVA 857
              DTSKLN HLKELMPGLTAKVFRTYNASITLD +LN+E + G A EKI +YQHANKEVA
Sbjct: 683  KLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNREARGGDAMEKIVIYQHANKEVA 742

Query: 856  IICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLA 677
            IICNHQRSVSKSH+ QMS+L+EK+ +L+   +EL TDL RA+KGKPPLKD +GK KKN+ 
Sbjct: 743  IICNHQRSVSKSHDVQMSRLSEKMRELQGVLDELKTDLARAKKGKPPLKDSDGKPKKNMT 802

Query: 676  PEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKI 497
            PE + +KIAQ + KIEKME D + KEDLKTVALGTSKINYLDPRISVAWCKR EVPIEKI
Sbjct: 803  PEVLERKIAQTNTKIEKMERDMKTKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIEKI 862

Query: 496  FNKSLLAKFAWSMDVDPNFRF 434
            FNKSLLAKFAW+MDVDP+FRF
Sbjct: 863  FNKSLLAKFAWAMDVDPSFRF 883


>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
          Length = 903

 Score =  928 bits (2399), Expect = 0.0
 Identities = 491/782 (62%), Positives = 558/782 (71%), Gaps = 28/782 (3%)
 Frame = -2

Query: 2695 LSKSNIKSENSDDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXX 2516
            L + + K+++SDDDKPLSLK +SS            K S +    P+  K          
Sbjct: 141  LKRVDEKADDSDDDKPLSLKINSS------------KMSSNCASRPVLQKAVAKVEQPDE 188

Query: 2515 XXXXXKPLLSRFQSKAI---GGSSMKDSN-----VAEXXXXXXXXXXXXXXXXXXXXXXX 2360
                 KPL SR  + A    GG++ +DS       A                        
Sbjct: 189  DSDDDKPLASRLPTNAAPKSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSSKGLNNDS 248

Query: 2359 KGGQ---KRPLSGANPAD-------------SSSIKXXXXXXDNDHLPIAQRMKKTVSSN 2228
             G +   KRPL  +N                S+S+K      DND+ P+AQR+K   SS 
Sbjct: 249  NGPRNLGKRPLDNSNQTSLALKKAKPSNVSASASVKREIKADDNDNTPLAQRLKIGESSK 308

Query: 2227 SASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXM----PPGSGGGQKWTTLEHNG 2060
                +KN +                                  PPGSGGG+KWTTLEHNG
Sbjct: 309  GKPSAKNVVKKSPASMKKGIKKMKGKVKTKMMKNSQFSKTMKVPPGSGGGKKWTTLEHNG 368

Query: 2059 VIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLML 1880
            VIFPPPYKPHGVKMLY GQPVDLTPEQEEVATMFAVMKDTDYA K  FIENF  DWR +L
Sbjct: 369  VIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIENFFTDWRTLL 428

Query: 1879 GKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKE 1700
            GKNH+IKKFELCDFTPIYEWHL+EKEKKKQMT+               KYMWA+VDGVKE
Sbjct: 429  GKNHVIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKE 488

Query: 1699 KVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHD 1520
            KVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIG+DAP+PECPIPGERWKE+KHD
Sbjct: 489  KVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGEDAPVPECPIPGERWKEVKHD 548

Query: 1519 NTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFN 1340
            NTVTWLAFWNDPI+ K+FKYVFLAASSSLKGQSDKEKYEK+R LK YIQ+IR NYT+DF 
Sbjct: 549  NTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGYIQDIRDNYTKDFR 608

Query: 1339 SKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGK 1160
            SKD  KRQIAVATYLIDKLALRAGNEKD+DEADTVGCCTLKV+NV  +PPNK++FDFLGK
Sbjct: 609  SKDVAKRQIAVATYLIDKLALRAGNEKDEDEADTVGCCTLKVDNVTCLPPNKIQFDFLGK 668

Query: 1159 DSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLT 980
            DSIRY NTVEVE  VYKAI  F+  K+                DT++LN HLK+LMPGLT
Sbjct: 669  DSIRYFNTVEVEELVYKAIEGFRAGKKPG-------KDLFDQLDTTRLNAHLKDLMPGLT 721

Query: 979  AKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSK 800
            AKVFRTYNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSHE+QM++
Sbjct: 722  AKVFRTYNASITLDGILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMTR 781

Query: 799  LNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKME 620
            LNE+I+DLKAQR+EL  DL++A+KGKP   DKEGK K+NLAP+AI KKIA I+ KIEKME
Sbjct: 782  LNERIDDLKAQRDELKVDLSKAKKGKPLGYDKEGKQKRNLAPDAIEKKIAAIETKIEKME 841

Query: 619  IDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNF 440
            ++K+ KEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL+AKF W+MDVDP F
Sbjct: 842  MEKKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLVAKFGWAMDVDPEF 901

Query: 439  RF 434
            RF
Sbjct: 902  RF 903


>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  927 bits (2395), Expect = 0.0
 Identities = 487/757 (64%), Positives = 550/757 (72%), Gaps = 6/757 (0%)
 Frame = -2

Query: 2686 SNIKSENSDDDKPLSLKYSSSGIVNRSASLQAVKA----SQSTKPLPLSVKLXXXXXXXX 2519
            +N +SE+S+DDKPLS K S+      S  L+ + +    SQ TK                
Sbjct: 12   ANGESEDSEDDKPLSAKLSARLPKGNSHVLKGLSSPVLQSQKTK------------VDSS 59

Query: 2518 XXXXXXKPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQKRP 2339
                   PLL + Q K+  G+S   S + +                         G   P
Sbjct: 60   DDSEDEIPLLLKLQLKSRKGAS--SSKLLDSK-----------------------GLSSP 94

Query: 2338 LSGANPADSSSIKXXXXXXDN-DHLPIAQRMK-KTVSSNSASISKNALHXXXXXXXXXXX 2165
             S    +  + +       D+ D +P++ + + KTVSS++   SK  +            
Sbjct: 95   ASSRPQSQKAKVNNKNLSDDSEDEIPLSSKFRLKTVSSDNKKASKTKVIPSSRKKATKKA 154

Query: 2164 XXXXXXXXXXXXXXXXXMPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTP 1985
                             +PP SG GQKWTTLEHNGVIFPPPYKPHGVKMLY G+PVDLTP
Sbjct: 155  KKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTP 214

Query: 1984 EQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEK 1805
            EQEEVATMFAVMKDTDYA+K +FIENFM+DWR+ LGKNH+IKKFELCDFTPIYEWH KEK
Sbjct: 215  EQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEK 274

Query: 1804 EKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 1625
            EKKKQMT+               KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL
Sbjct: 275  EKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 334

Query: 1624 KQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAA 1445
            K+RI P DITINIGK+AP+PECPIPGERWKE++HDNTVTWLAFWNDPINPKEFKYVFLAA
Sbjct: 335  KKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAA 394

Query: 1444 SSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGN 1265
            SSSLKGQSDKEKYEKARLLKDYIQNIRA YT+DF +KD  KRQIAVATYLIDKLALRAGN
Sbjct: 395  SSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQIAVATYLIDKLALRAGN 454

Query: 1264 EKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTA 1085
            EKDDDEADTVGCCTLKVENV LVPPNKL+FDFLGKDSIRY NTVEVE PVYKAIG F+T 
Sbjct: 455  EKDDDEADTVGCCTLKVENVALVPPNKLEFDFLGKDSIRYFNTVEVELPVYKAIGQFKTG 514

Query: 1084 KRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGT 905
            K                 DTSKLN HLKELMPGLTAKVFRTYNASITLD +LN+E + G 
Sbjct: 515  KSGG-------DDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNREARGGD 567

Query: 904  APEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKG 725
            A EKI +YQHANKEVAIICNHQRSVSKSH+ QMS+L+EK+ +L+   +EL TDL RA+KG
Sbjct: 568  AMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKMRELQGVLDELKTDLARAKKG 627

Query: 724  KPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPR 545
            KPPLKD +GK KKN+ PE + +KIAQ + KIEKME D + KEDLKTVALGTSKINYLDPR
Sbjct: 628  KPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDLKTVALGTSKINYLDPR 687

Query: 544  ISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            ISVAWCKR EVPIEKIFNKSLLAKFAW+MDVDP+FRF
Sbjct: 688  ISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFRF 724


>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
          Length = 911

 Score =  920 bits (2377), Expect = 0.0
 Identities = 485/776 (62%), Positives = 561/776 (72%), Gaps = 29/776 (3%)
 Frame = -2

Query: 2674 SENSDDDKPLSLKYSSSGIVNRSAS-----------LQAVKASQSTKPL----PLSVKLX 2540
            +++SDD+KPLSLK +S+   + S +           +Q    S+  KPL    P    L 
Sbjct: 145  ADDSDDNKPLSLKINSTKTPSNSTNKASVLKVTPKIVQPADDSEDEKPLARRLPAKTTLK 204

Query: 2539 XXXXXXXXXXXXXKPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXX 2360
                          PL +RF SK  G +S   S+  +                       
Sbjct: 205  SGANASDDSEDEK-PLAARF-SKVTGSASASISSSKDKVQSANLKPSSSSKVSNNDTNTS 262

Query: 2359 KGGQKRPLSGAN----------PAD---SSSIKXXXXXXDNDHLPIAQRMKKTVSSNSAS 2219
            +   KRP+   N          P+D   S+S+K      DND++P++QR+K   SS S  
Sbjct: 263  RNSIKRPIDNNNQSISALKKARPSDVSVSASVKRESKADDNDNIPLSQRLKMGESSKSKP 322

Query: 2218 ISKNAL-HXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQKWTTLEHNGVIFPPP 2042
             +KN +                              +PPGSGGGQKWTTL HNGVIFPPP
Sbjct: 323  PAKNIVKKNPSSFKKDSKKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHNGVIFPPP 382

Query: 2041 YKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHII 1862
            YKPHGVKMLY GQPVDLTPEQEEVATMF+VMKDTDYASK+ FI+NF  DWR +LGKNHII
Sbjct: 383  YKPHGVKMLYNGQPVDLTPEQEEVATMFSVMKDTDYASKQTFIDNFFTDWRKILGKNHII 442

Query: 1861 KKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFR 1682
            KKFELCDFTPIYEWHL+EKEKKKQMTS               KYMWA+VDGVKEKVGNFR
Sbjct: 443  KKFELCDFTPIYEWHLREKEKKKQMTSEEKKAVKEEKLKQEEKYMWAVVDGVKEKVGNFR 502

Query: 1681 VEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWL 1502
            VEPPGLFRGRGEHPKMGKLK+RI+P DITINIGK APIPECPIPGE WKE+KHDNTVTWL
Sbjct: 503  VEPPGLFRGRGEHPKMGKLKRRIQPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWL 562

Query: 1501 AFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTK 1322
            AFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK+R LK +I  IR  YT+DF SKD TK
Sbjct: 563  AFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHIHKIRDTYTKDFRSKDKTK 622

Query: 1321 RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYL 1142
            +QIAVATYLIDKLALRAGNEKDDDEA+TVGCCTLKV+NV  VPPN L+FDFLGKDSIRY 
Sbjct: 623  KQIAVATYLIDKLALRAGNEKDDDEAETVGCCTLKVDNVTCVPPNNLQFDFLGKDSIRYF 682

Query: 1141 NTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRT 962
            NTVEVE PVYKAI +F+  K+                DT++LN HLK+LMPGLTAKVFRT
Sbjct: 683  NTVEVELPVYKAIEEFRAGKKPG-------DDLFDKLDTTRLNAHLKDLMPGLTAKVFRT 735

Query: 961  YNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKIN 782
            YNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSH++QM++LNEKI+
Sbjct: 736  YNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKID 795

Query: 781  DLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIK 602
            +LKAQR+EL  DL++ +KGK    DK+GK K+NLAPEA  KKI+Q++ KIEKME+DK+IK
Sbjct: 796  ELKAQRDELKADLSKVKKGKSLGYDKDGKPKRNLAPEAFEKKISQVETKIEKMEMDKKIK 855

Query: 601  EDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            EDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL+AKF+W+MDVDP+FRF
Sbjct: 856  EDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 911


>ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
            gi|241940222|gb|EES13367.1| hypothetical protein
            SORBIDRAFT_07g003610 [Sorghum bicolor]
          Length = 921

 Score =  918 bits (2373), Expect = 0.0
 Identities = 488/774 (63%), Positives = 553/774 (71%), Gaps = 28/774 (3%)
 Frame = -2

Query: 2671 ENSDDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXKPL 2492
            ++ DDDKPLSLK +SS + N S S             P+  ++              KPL
Sbjct: 167  DSDDDDKPLSLKINSSKMSNNSVSK------------PVLQRIAPKVEQPDEDSDDDKPL 214

Query: 2491 LSRFQSKAI---GGSSMKDSN----VAEXXXXXXXXXXXXXXXXXXXXXXXKGGQ----K 2345
             SR  + A    GG+  +DS     +A                          GQ    K
Sbjct: 215  ASRLPNNACPKSGGNVSEDSEDEKPLAARFSKVAGSGNLKTASSSKGLNSDTNGQRSLGK 274

Query: 2344 RPLSGANPAD-------------SSSIKXXXXXXDNDHLPIAQRMKKTVSSN----SASI 2216
            RPL  +N                S+S+K      DND+ P+AQR+K   SS     + SI
Sbjct: 275  RPLDNSNQTSLAIKKAKPSNVSASASVKREIKTDDNDNTPLAQRLKMGESSKGKPPAKSI 334

Query: 2215 SKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQKWTTLEHNGVIFPPPYK 2036
             K +                              +PPGSG G+KWTTLEHNGVIFPPPYK
Sbjct: 335  VKKSPASAKDIKKLKGKGKLKKNMKNSQFSKTMRVPPGSGEGKKWTTLEHNGVIFPPPYK 394

Query: 2035 PHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKK 1856
            PHGVKMLY GQPVDLTPEQEEVATMFAVMKDTDYA K  FI+NF  DWR +LGKNHIIKK
Sbjct: 395  PHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIDNFFTDWRKILGKNHIIKK 454

Query: 1855 FELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVE 1676
            FELCDFTPIYEWHL+EKEKKKQMT+               KYMWA+VDGVKEKVGNFRVE
Sbjct: 455  FELCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVE 514

Query: 1675 PPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAF 1496
            PPGLFRGRGEHPKMGKLK+RI+P DITINIGK AP+PECPIPGE WKEIKHDNTVTWLAF
Sbjct: 515  PPGLFRGRGEHPKMGKLKRRIQPSDITINIGKGAPVPECPIPGESWKEIKHDNTVTWLAF 574

Query: 1495 WNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQ 1316
            WNDPI+ K+FKYVFLAASSSLKGQSDKEKYEK+R LK +IQ IR NYT+DF +KD T+RQ
Sbjct: 575  WNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQ 634

Query: 1315 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNT 1136
            IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+NV  +PPNK++FDFLGKDSIRY NT
Sbjct: 635  IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCMPPNKIQFDFLGKDSIRYFNT 694

Query: 1135 VEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYN 956
            VEVE  VYKAI  F+  K+                DT++LN HLK+LMPGLTAKVFRTYN
Sbjct: 695  VEVEELVYKAIEGFRAGKKPG-------EGLFDKIDTTRLNAHLKDLMPGLTAKVFRTYN 747

Query: 955  ASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDL 776
            ASITLD IL++ET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSHE+QM KLNEKI++L
Sbjct: 748  ASITLDGILHEETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMIKLNEKIDEL 807

Query: 775  KAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKED 596
            K+Q EEL  DL++A+KGKP   DKEGK K+NLAPEAI KKIA ++ KI+KME+DK+IKED
Sbjct: 808  KSQMEELKADLSKAKKGKPLGYDKEGKQKRNLAPEAIEKKIAMVEGKIDKMEMDKKIKED 867

Query: 595  LKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            LKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL+AKF W+MDVDP+FRF
Sbjct: 868  LKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFGWAMDVDPDFRF 921


>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
            gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
            [Oryza sativa Japonica Group]
            gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
            Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
            protein OsJ_26075 [Oryza sativa Japonica Group]
          Length = 916

 Score =  916 bits (2368), Expect = 0.0
 Identities = 487/780 (62%), Positives = 560/780 (71%), Gaps = 33/780 (4%)
 Frame = -2

Query: 2674 SENSDDDKPLSLKYSSSGIVNRSASLQAVKA-----------SQSTKPL----PLSVKLX 2540
            + +SDDDKPLSLK +S+   + SA+   V             S+  KPL    P +  L 
Sbjct: 146  ANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALK 205

Query: 2539 XXXXXXXXXXXXXKPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXX 2360
                          PL +RF SK  G +S   S+  +                       
Sbjct: 206  RGGNVSDDSEDEK-PLAARF-SKVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTS 263

Query: 2359 KGGQKRPLSGAN----------PAD---SSSIKXXXXXXDNDHLPIAQRMKKTVSSNSAS 2219
            +   KRP+   N          P+D   S+S+K      DND++P++QR+K   SS S  
Sbjct: 264  RNSIKRPIDNNNQTSSALKKARPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSKP 323

Query: 2218 ISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXM-----PPGSGGGQKWTTLEHNGVI 2054
             +KN +                                   PPGSGGGQKWTTL H+GVI
Sbjct: 324  PAKNIVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVI 383

Query: 2053 FPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGK 1874
            FPPPYKPHGVKMLY GQPVDLTPEQEEVATMFAVMKDTDYASK+ FI+NF  DWR +LGK
Sbjct: 384  FPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGK 443

Query: 1873 NHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKV 1694
            NH+IKKFELCDFTPIYEWHL+EKEKKKQMTS               KYMWAIVDGVKEKV
Sbjct: 444  NHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKV 503

Query: 1693 GNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNT 1514
            GNFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIGK APIPECPIPGE WKE+KHDNT
Sbjct: 504  GNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNT 563

Query: 1513 VTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSK 1334
            VTWLAFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK+R LK ++  IR  YT+DF SK
Sbjct: 564  VTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSK 623

Query: 1333 DPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDS 1154
            D TK+QIAVATYLIDKLALRAGNEKD+DEA+TVGCCTLKV+NV  VPPNKL+FDFLGKDS
Sbjct: 624  DKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDS 683

Query: 1153 IRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAK 974
            IRY NTVEVE  VYKAI +F+  K+                DT++LN HLK+LMPGLTAK
Sbjct: 684  IRYFNTVEVELLVYKAIEEFRAGKKPG-------QDLFDKLDTTRLNAHLKDLMPGLTAK 736

Query: 973  VFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLN 794
            VFRTYNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSH++QM++LN
Sbjct: 737  VFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLN 796

Query: 793  EKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEID 614
            EKI++LKAQR+EL  DL++ RKGK    DK+GK K+NLAPEA  KKI+QI+ KIEKME+D
Sbjct: 797  EKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMD 856

Query: 613  KQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            K+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL+AKF+W+MDVDP+FRF
Sbjct: 857  KKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 916


>gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
          Length = 916

 Score =  915 bits (2364), Expect = 0.0
 Identities = 486/780 (62%), Positives = 560/780 (71%), Gaps = 33/780 (4%)
 Frame = -2

Query: 2674 SENSDDDKPLSLKYSSSGIVNRSASLQAVKA-----------SQSTKPL----PLSVKLX 2540
            + +SDDDKPLSLK +S+   + SA+   V             S+  KPL    P +  L 
Sbjct: 146  ANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALK 205

Query: 2539 XXXXXXXXXXXXXKPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXX 2360
                          PL +RF SK  G +S   S+  +                       
Sbjct: 206  RGGNVSDDSEDEK-PLAARF-SKVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTS 263

Query: 2359 KGGQKRPLSGAN----------PAD---SSSIKXXXXXXDNDHLPIAQRMKKTVSSNSAS 2219
            +   KRP+   N          P+D   S+S+K      DND++P++QR+K   SS S  
Sbjct: 264  RNSIKRPIDNNNQTSSALKKARPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSKP 323

Query: 2218 ISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXM-----PPGSGGGQKWTTLEHNGVI 2054
             +KN +                                   PPGSGGGQKWTTL H+GVI
Sbjct: 324  PAKNIVKKSPSSLKKDNKKMKMKLKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVI 383

Query: 2053 FPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGK 1874
            FPPPYKPHGVK+LY GQPVDLTPEQEEVATMFAVMKDTDYASK+ FI+NF  DWR +LGK
Sbjct: 384  FPPPYKPHGVKILYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGK 443

Query: 1873 NHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKV 1694
            NH+IKKFELCDFTPIYEWHL+EKEKKKQMTS               KYMWAIVDGVKEKV
Sbjct: 444  NHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKV 503

Query: 1693 GNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNT 1514
            GNFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIGK APIPECPIPGE WKE+KHDNT
Sbjct: 504  GNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNT 563

Query: 1513 VTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSK 1334
            VTWLAFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK+R LK ++  IR  YT+DF SK
Sbjct: 564  VTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSK 623

Query: 1333 DPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDS 1154
            D TK+QIAVATYLIDKLALRAGNEKD+DEA+TVGCCTLKV+NV  VPPNKL+FDFLGKDS
Sbjct: 624  DKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDS 683

Query: 1153 IRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAK 974
            IRY NTVEVE  VYKAI +F+  K+                DT++LN HLK+LMPGLTAK
Sbjct: 684  IRYFNTVEVELLVYKAIEEFRAGKKPG-------QDLFDKLDTTRLNAHLKDLMPGLTAK 736

Query: 973  VFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLN 794
            VFRTYNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSH++QM++LN
Sbjct: 737  VFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLN 796

Query: 793  EKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEID 614
            EKI++LKAQR+EL  DL++ RKGK    DK+GK K+NLAPEA  KKI+QI+ KIEKME+D
Sbjct: 797  EKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMD 856

Query: 613  KQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            K+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL+AKF+W+MDVDP+FRF
Sbjct: 857  KKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 916


>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
            gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
            isoform 1 [Theobroma cacao]
          Length = 904

 Score =  914 bits (2361), Expect = 0.0
 Identities = 492/771 (63%), Positives = 545/771 (70%), Gaps = 24/771 (3%)
 Frame = -2

Query: 2674 SENSDDDKPLSLKYSSSGIVNRSASLQAVKA-SQSTKPLPLS-VKLXXXXXXXXXXXXXX 2501
            S++ DDD  L L     GI N+     +  A +QS + +P + VK+              
Sbjct: 147  SDDDDDDDSLPLSARLKGISNQGNKGASTSAPAQSRRLVPKTEVKVSAEDPDDEA----- 201

Query: 2500 KPLLSRFQSKA-IGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQKRPLSGAN 2324
             PL +RF  K+  G SS +  +  E                           KRPL   N
Sbjct: 202  -PLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQNSSTLSGKRPLDKGN 260

Query: 2323 PADSSS-------------------IKXXXXXXDNDHLPIAQRMKKTVSSNSA-SISKNA 2204
             +D SS                   +K      D+DH+PIAQRMKK+ +SNS  S  K  
Sbjct: 261  SSDHSSAKKPKTSDAPTTMKTKQVTVKAEKADEDDDHMPIAQRMKKSTASNSKLSSMKQK 320

Query: 2203 LHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQK-WTTLEHNGVIFPPPYKPHG 2027
                                          +PP SG GQK W+TL HNGVIFP PY PHG
Sbjct: 321  TTKVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLVHNGVIFPSPYTPHG 380

Query: 2026 VKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFEL 1847
            VKMLY G+PVDLTPEQEEVATMFAVMKDTDY SK QF +NF  DW  +LGKNH IK  + 
Sbjct: 381  VKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWSKLLGKNHTIKDLDR 440

Query: 1846 CDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPG 1667
            CDFTPIYEWHL+EKEKKKQM+S               K+MWAIVDGVKEKVGNFRVEPPG
Sbjct: 441  CDFTPIYEWHLQEKEKKKQMSSEEKKALKEEKLKQEEKFMWAIVDGVKEKVGNFRVEPPG 500

Query: 1666 LFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWND 1487
            LFRGRGEHPKMGKLK+RIRP DITINIGKDAPIPECPIPGERWK+IKHDNTVTWLAFWND
Sbjct: 501  LFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGERWKDIKHDNTVTWLAFWND 560

Query: 1486 PINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAV 1307
            PINPKEFKYVFLAASSSLKGQSDKEKYEKAR+LKDYI+NIRA YT+DF +KD  KRQIAV
Sbjct: 561  PINPKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRAAYTKDFTTKDVMKRQIAV 620

Query: 1306 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEV 1127
            ATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPNKLKFDFLGKDSI+Y+NTVEV
Sbjct: 621  ATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEV 680

Query: 1126 EPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASI 947
            E PVYKAIG FQT K  +              DTSKLN HLKELMPGLTAKVFRTYNASI
Sbjct: 681  ELPVYKAIGQFQTGKSKS-------DDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASI 733

Query: 946  TLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQ 767
            TLD +LNKETKDG   EK+ VYQ ANKEVAIICNHQRS+SKSH  QMS+L EKI +LK  
Sbjct: 734  TLDEMLNKETKDGDVAEKVVVYQRANKEVAIICNHQRSISKSHSAQMSRLTEKITELKGV 793

Query: 766  REELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKT 587
             +EL  DL+RA+KGKPPLKD +GK K+NL P+AI KKI Q +AKIEKME D Q KEDLKT
Sbjct: 794  LKELKIDLDRAKKGKPPLKDADGKQKRNLTPQAIQKKIDQTNAKIEKMERDMQTKEDLKT 853

Query: 586  VALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            VALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSLLAKFAW+MDVDP+FRF
Sbjct: 854  VALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPDFRF 904


>ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Setaria italica]
          Length = 932

 Score =  913 bits (2359), Expect = 0.0
 Identities = 490/811 (60%), Positives = 557/811 (68%), Gaps = 57/811 (7%)
 Frame = -2

Query: 2695 LSKSNIKSENSDDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXX 2516
            L + + K+++SDDDKPLSLK +SS            K S +    P+  K          
Sbjct: 141  LKRVDEKADDSDDDKPLSLKINSS------------KMSSNCASRPVLQKAVAKVEQPDE 188

Query: 2515 XXXXXKPLLSRFQSKAI---GGSSMKDSN-----VAEXXXXXXXXXXXXXXXXXXXXXXX 2360
                 KPL SR  + A    GG++ +DS       A                        
Sbjct: 189  DSDDDKPLASRLPTNAAPKSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSSKGLNNDS 248

Query: 2359 KGGQ---KRPLSGANPAD-------------SSSIKXXXXXXDNDHLPIAQRMKKTVSSN 2228
             G +   KRPL  +N                S+S+K      DND+ P+AQR+K   SS 
Sbjct: 249  NGPRNLGKRPLDNSNQTSLALKKAKPSNVSASASVKREIKADDNDNTPLAQRLKIGESSK 308

Query: 2227 SASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXM----PPGSGGGQKWTTLEHNG 2060
                +KN +                                  PPGSGGG+KWTTLEHNG
Sbjct: 309  GKPSAKNVVKKSPASMKKGIKKMKGKVKTKMMKNSQFSKTMKVPPGSGGGKKWTTLEHNG 368

Query: 2059 VIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLML 1880
            VIFPPPYKPHGVKMLY GQPVDLTPEQEEVATMFAVMKDTDYA K  FIENF  DWR +L
Sbjct: 369  VIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIENFFTDWRTLL 428

Query: 1879 GKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKE 1700
            GKNH+IKKFELCDFTPIYEWHL+EKEKKKQMT+               KYMWA+VDGVKE
Sbjct: 429  GKNHVIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKE 488

Query: 1699 KVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHD 1520
            KVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIG+DAP+PECPIPGERWKE+KHD
Sbjct: 489  KVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGEDAPVPECPIPGERWKEVKHD 548

Query: 1519 NTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFN 1340
            NTVTWLAFWNDPI+ K+FKYVFLAASSSLKGQSDKEKYEK+R LK YIQ+IR NYT+DF 
Sbjct: 549  NTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGYIQDIRDNYTKDFR 608

Query: 1339 SKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGK 1160
            SKD  KRQIAVATYLIDKLALRAGNEKD+DEADTVGCCTLKV+NV  +PPNK++FDFLGK
Sbjct: 609  SKDVAKRQIAVATYLIDKLALRAGNEKDEDEADTVGCCTLKVDNVTCLPPNKIQFDFLGK 668

Query: 1159 DSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLT 980
            DSIRY NTVEVE  VYKAI  F+  K+                 T++LN HLK+LMPGLT
Sbjct: 669  DSIRYFNTVEVEELVYKAIEGFRAGKKPGKDLFDQLD-------TTRLNAHLKDLMPGLT 721

Query: 979  AKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSK 800
            AKVFRTYNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSHE+QM++
Sbjct: 722  AKVFRTYNASITLDGILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMTR 781

Query: 799  LNEKINDLK-----------------------------AQREELSTDLNRARKGKPPLKD 707
            LNE+I+DLK                             AQR+EL  DL++A+KGKP   D
Sbjct: 782  LNERIDDLKVGFLPQVINSCFYHGFFLEVFSIIFFLLQAQRDELKVDLSKAKKGKPLGYD 841

Query: 706  KEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWC 527
            KEGK K+NLAP+AI KKIA I+ KIEKME++K+ KEDLKTVALGTSKINYLDPRI+VAWC
Sbjct: 842  KEGKQKRNLAPDAIEKKIAAIETKIEKMEMEKKTKEDLKTVALGTSKINYLDPRITVAWC 901

Query: 526  KRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            KRHEVPIEKIFNKSL+AKF W+MDVDP FRF
Sbjct: 902  KRHEVPIEKIFNKSLVAKFGWAMDVDPEFRF 932


>ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|ACS44671.1| DNA
            topoisomerase I [Zea mays]
          Length = 904

 Score =  903 bits (2333), Expect = 0.0
 Identities = 479/773 (61%), Positives = 545/773 (70%), Gaps = 27/773 (3%)
 Frame = -2

Query: 2671 ENSDDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXKPL 2492
            ++ DDDKPL LK +SS            + S +    P+  +               KPL
Sbjct: 151  DSDDDDKPLGLKINSS------------RMSSNRVNKPVLQRTVPKVEQPDEDSDDDKPL 198

Query: 2491 LSRFQSKA---IGGSSMKDSN----VAEXXXXXXXXXXXXXXXXXXXXXXXKGGQ----K 2345
             SR  S A    GG   +DS     +A                          GQ    K
Sbjct: 199  ASRLPSNAGPKSGGDVSEDSEDEKPLAARFSKVAGSGNPKIASSSKGLTSDTNGQQSLGK 258

Query: 2344 RPLSGANPADSSSIKXXXXXXD-----------NDHLPIAQRMKKTVSSNSASISKNA-- 2204
            RPL  +N   S+  K                  +D+ P+AQR+K   SS   S +K+   
Sbjct: 259  RPLDSSNQTSSALKKAKPSNVSASAIVRREIKTDDNTPLAQRLKMGESSKGKSSAKSVFK 318

Query: 2203 ---LHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQKWTTLEHNGVIFPPPYKP 2033
               +                             +PPGSGGG+KWTTLEHNGVIFPPPYKP
Sbjct: 319  KSPVSVKKDIKKMKGKGKLKKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKP 378

Query: 2032 HGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKF 1853
            HGVKMLY G+PVDLTPEQEEVATMFAVMKDTDYA+K  FI+NF  DWR +LGKNHIIK F
Sbjct: 379  HGVKMLYNGKPVDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNF 438

Query: 1852 ELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEP 1673
            ELCDFTPIYEWHL+EKE+KKQMT+               KYMWA+VDGVKEKVGNFRVEP
Sbjct: 439  ELCDFTPIYEWHLREKERKKQMTTEEKKTLREDNLKQEEKYMWAVVDGVKEKVGNFRVEP 498

Query: 1672 PGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFW 1493
            PGLFRGRGEHPKMGKLK+RI P DITINIGK AP+PECPIPGE WKE+KHDNTVTWLAFW
Sbjct: 499  PGLFRGRGEHPKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFW 558

Query: 1492 NDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQI 1313
            NDPINPK+FKYVFLAASSSLKGQSDKEKYEK+R LK +IQ IR NYT+DF +KD T+RQI
Sbjct: 559  NDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQI 618

Query: 1312 AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTV 1133
            AVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+NV  +PPN+++FDFLGKDSIRY NTV
Sbjct: 619  AVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTV 678

Query: 1132 EVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNA 953
            EVE  VYKAI  F+  K+                DTS+LN HLK+LMPGLTAKVFRTYNA
Sbjct: 679  EVEELVYKAIEGFRAGKKPG-------QDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNA 731

Query: 952  SITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLK 773
            SITLD IL++ET+DGT  EKIAVYQ ANKEVAIICN QRSVSKSHE+QM+++NEKI++LK
Sbjct: 732  SITLDGILHEETEDGTVLEKIAVYQRANKEVAIICNQQRSVSKSHESQMTRMNEKIDELK 791

Query: 772  AQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDL 593
            +Q EEL  DLN+A+KGKP   D EGK K+NLAPEAI KK+A ++ KIEKME+DK+IKEDL
Sbjct: 792  SQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDL 851

Query: 592  KTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            KTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSLLAKF W+MDVDP FRF
Sbjct: 852  KTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFVWAMDVDPEFRF 904


>ref|XP_002317355.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222860420|gb|EEE97967.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 860

 Score =  900 bits (2325), Expect = 0.0
 Identities = 477/783 (60%), Positives = 540/783 (68%), Gaps = 21/783 (2%)
 Frame = -2

Query: 2719 SGSAGNMDLSKSNIKSENSDDDKPLSLKY-SSSGIVNRSASLQA-VKASQSTKPLPLSVK 2546
            S S    + +K  +  ++S+DDKPLS ++  S+   N+  ++ A VK   S         
Sbjct: 105  SSSIAVKEETKPIVDDDDSEDDKPLSSRFKGSTNNANKGVTVPARVKDEHS--------- 155

Query: 2545 LXXXXXXXXXXXXXXKPLLSRFQSKA-IGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXX 2369
                            PL SRF +K+  G SS K  + +E                    
Sbjct: 156  -----------DDDEVPLSSRFAAKSNAGSSSCKTISSSEKILLVSKIQLNGSTAKDKQQ 204

Query: 2368 XXXKGGQKRPLSGANPADSS----------------SIKXXXXXXDNDHLPIAQRMKKTV 2237
                   KRP+    P++ S                ++K      D+DHL I+QRMKK  
Sbjct: 205  KSSAVPTKRPMDNKVPSNQSFAKKPKLSDASTTKQVTVKAELKADDDDHLTISQRMKKAS 264

Query: 2236 SSN--SASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQKWTTLEHN 2063
            SS+  S S+ +N                                P  S G +KW TL HN
Sbjct: 265  SSSNKSLSVKQNVTKVVSFSSKKTTKNNKKQMQNSKYSKSTKVQPGSSDGQKKWKTLVHN 324

Query: 2062 GVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLM 1883
            GVIFPPPYKPHGVKMLYKG+PVDLTPEQEEVATMFAVMKDT+Y  K QF++NF +DWR +
Sbjct: 325  GVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMKDTEYVQKPQFLQNFWNDWRTL 384

Query: 1882 LGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVK 1703
            LGKNH+I+K E CDF PIYEWH KEKEKKKQM++                YMWAIV+GVK
Sbjct: 385  LGKNHVIQKLEACDFNPIYEWHQKEKEKKKQMSTEEKKAVREEKLKQEEMYMWAIVNGVK 444

Query: 1702 EKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKH 1523
            EKVGNFRVEPPGLFRGRGEHPKMGKLK RIRP DITINIGKDAPIP+CPIPGERWKE+KH
Sbjct: 445  EKVGNFRVEPPGLFRGRGEHPKMGKLKSRIRPSDITINIGKDAPIPKCPIPGERWKEVKH 504

Query: 1522 DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDF 1343
            DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR LKDYI NIR  YT+DF
Sbjct: 505  DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRTAYTKDF 564

Query: 1342 NSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLG 1163
             SKD TKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPNKLKFDFLG
Sbjct: 565  ASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVECIPPNKLKFDFLG 624

Query: 1162 KDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGL 983
            KDSIRY NTVEVE PVYKAI  FQ AK+                DTSKLN HLKELMPGL
Sbjct: 625  KDSIRYENTVEVELPVYKAIRQFQVAKKPT-------DDLFDSLDTSKLNAHLKELMPGL 677

Query: 982  TAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMS 803
            TAKVFRTYNASITLD  L +ET+DG   EK  +Y  ANK+VAIICNHQR++SKSH+ QMS
Sbjct: 678  TAKVFRTYNASITLDEKLYEETEDGDVAEKFVIYNQANKQVAIICNHQRTISKSHDAQMS 737

Query: 802  KLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKM 623
            +L EK+ +LK   +E  TDL+RA+KGKPPLKD +GK K+NL PEAI KKIA  + KIEKM
Sbjct: 738  RLTEKLEELKGTLKEFKTDLDRAKKGKPPLKDADGKQKRNLTPEAIEKKIATTNQKIEKM 797

Query: 622  EIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPN 443
            E+  + KEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSLLAKF W+MDVDP 
Sbjct: 798  ELSMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPQ 857

Query: 442  FRF 434
            FRF
Sbjct: 858  FRF 860


>gb|AFW61219.1| DNA topoisomerase I [Zea mays]
          Length = 602

 Score =  899 bits (2322), Expect = 0.0
 Identities = 436/559 (77%), Positives = 484/559 (86%)
 Frame = -2

Query: 2110 PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYA 1931
            PPGSGGG+KWTTLEHNGVIFPPPYKPHGVKMLY G+P+DLTPEQEEVATMFAVMKDTDYA
Sbjct: 51   PPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPIDLTPEQEEVATMFAVMKDTDYA 110

Query: 1930 SKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXX 1751
            +K  FI+NF  DWR +LGKNHIIK FELCDFTPIYEWHL+EKE+KKQMT+          
Sbjct: 111  AKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTTEEKKTLREDK 170

Query: 1750 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAP 1571
                 KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIGK AP
Sbjct: 171  LKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSDITINIGKGAP 230

Query: 1570 IPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARL 1391
            +PECPIPGE WKE+KHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQSDKEKYEK+R 
Sbjct: 231  VPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRK 290

Query: 1390 LKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1211
            LK +IQ IR NYT+DF +KD T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+
Sbjct: 291  LKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVD 350

Query: 1210 NVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXX 1031
            NV  +PPN+++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+                
Sbjct: 351  NVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPG-------QDLFDKI 403

Query: 1030 DTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAII 851
            DTS+LN HLK+LMPGLTAKVFRTYNASITLD IL++ET+DGT  EKIAVYQ ANKEVAII
Sbjct: 404  DTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAVYQRANKEVAII 463

Query: 850  CNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPE 671
            CNHQRSVSKSHE+QM+++NEKI++LK+Q EEL  DLN+A+KGKP   D EGK K+NLAPE
Sbjct: 464  CNHQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPE 523

Query: 670  AIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFN 491
            AI KK+A ++ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFN
Sbjct: 524  AIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 583

Query: 490  KSLLAKFAWSMDVDPNFRF 434
            KSLLAKF W+MDVDP FRF
Sbjct: 584  KSLLAKFVWAMDVDPEFRF 602


>gb|ACL52396.1| unknown [Zea mays]
          Length = 574

 Score =  899 bits (2322), Expect = 0.0
 Identities = 436/559 (77%), Positives = 484/559 (86%)
 Frame = -2

Query: 2110 PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYA 1931
            PPGSGGG+KWTTLEHNGVIFPPPYKPHGVKMLY G+P+DLTPEQEEVATMFAVMKDTDYA
Sbjct: 23   PPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPIDLTPEQEEVATMFAVMKDTDYA 82

Query: 1930 SKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXX 1751
            +K  FI+NF  DWR +LGKNHIIK FELCDFTPIYEWHL+EKE+KKQMT+          
Sbjct: 83   AKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTTEEKKTLREDK 142

Query: 1750 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAP 1571
                 KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIGK AP
Sbjct: 143  LKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSDITINIGKGAP 202

Query: 1570 IPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARL 1391
            +PECPIPGE WKE+KHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQSDKEKYEK+R 
Sbjct: 203  VPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRK 262

Query: 1390 LKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1211
            LK +IQ IR NYT+DF +KD T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+
Sbjct: 263  LKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVD 322

Query: 1210 NVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXX 1031
            NV  +PPN+++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+                
Sbjct: 323  NVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPG-------QDLFDKI 375

Query: 1030 DTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAII 851
            DTS+LN HLK+LMPGLTAKVFRTYNASITLD IL++ET+DGT  EKIAVYQ ANKEVAII
Sbjct: 376  DTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAVYQRANKEVAII 435

Query: 850  CNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPE 671
            CNHQRSVSKSHE+QM+++NEKI++LK+Q EEL  DLN+A+KGKP   D EGK K+NLAPE
Sbjct: 436  CNHQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPE 495

Query: 670  AIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFN 491
            AI KK+A ++ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFN
Sbjct: 496  AIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 555

Query: 490  KSLLAKFAWSMDVDPNFRF 434
            KSLLAKF W+MDVDP FRF
Sbjct: 556  KSLLAKFVWAMDVDPEFRF 574


>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222847602|gb|EEE85149.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 877

 Score =  898 bits (2321), Expect = 0.0
 Identities = 483/777 (62%), Positives = 542/777 (69%), Gaps = 24/777 (3%)
 Frame = -2

Query: 2692 SKSNIKSENSDDDKPLSLKYS-SSGIVNRSASLQA-VKASQSTKPLPLSVKLXXXXXXXX 2519
            +KS +  E+S+DDKPLS +   S+  VN+  +  A VK   S                  
Sbjct: 128  TKSIVDDEDSEDDKPLSSRIKGSTNNVNKGVTAPAHVKDEPSDDD--------------- 172

Query: 2518 XXXXXXKPLLSRFQSKAIGG-SSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQKR 2342
                   PL SRF  K+  G SS K    +E                           KR
Sbjct: 173  -----EVPLSSRFAMKSNAGTSSSKSIRSSEIRPFPSKSQLNGSTKNDKQQKSSVVPTKR 227

Query: 2341 PLSGANPADSSS-------------------IKXXXXXXDNDHLPIAQRMKKTVSS-NSA 2222
            P+    P++ SS                   +K      D+DHL I+QRMKK  SS N +
Sbjct: 228  PMDNKVPSNHSSAKKPKLLDACTTTKVKQVTVKVEQKADDDDHLTISQRMKKADSSANKS 287

Query: 2221 SISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQK-WTTLEHNGVIFPP 2045
            S +K  +                             + PGS  GQK WTTL HNGVIFPP
Sbjct: 288  SFAKKKVTKVVSSSLKKTTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTLVHNGVIFPP 347

Query: 2044 PYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHI 1865
            PYKPHGVK+LYKG+P+DLTPEQEEVATMFAVMKDTDY  K QF +NF +DWR +LGKNH+
Sbjct: 348  PYKPHGVKILYKGKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGKNHV 407

Query: 1864 IKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNF 1685
            I+K + CDF PIYEWH +EKEKKKQM++               KYMWAIV+GVKEKVGNF
Sbjct: 408  IQKLDDCDFNPIYEWHQQEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVNGVKEKVGNF 467

Query: 1684 RVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTW 1505
            RVEPPGLFRGRGEHPKMGKLK RIRP DITINIGKDAPIPECPIPGERWKE+KHDNTVTW
Sbjct: 468  RVEPPGLFRGRGEHPKMGKLKSRIRPSDITINIGKDAPIPECPIPGERWKEVKHDNTVTW 527

Query: 1504 LAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPT 1325
            LAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKAR LKDYI NIRA YT+DF SKD T
Sbjct: 528  LAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYTKDFASKDIT 587

Query: 1324 KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRY 1145
            KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NVE +PPNKLKFDFLGKDSIRY
Sbjct: 588  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVECIPPNKLKFDFLGKDSIRY 647

Query: 1144 LNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFR 965
             NTVEVE PVYKAIG FQ AK+                DTSKLN HLKELMPGLTAKVFR
Sbjct: 648  ENTVEVELPVYKAIGHFQVAKKQT-------DDLFDSLDTSKLNAHLKELMPGLTAKVFR 700

Query: 964  TYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKI 785
            TYNASITLD  L +ET+DG   EKI +Y  ANK+VAIICNHQR++SKSH+ QMS+L EKI
Sbjct: 701  TYNASITLDEKLYEETEDGDVAEKIVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKI 760

Query: 784  NDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQI 605
             +LK+  +EL TDL+RA+KGKPPLK  +GK K++L PEAI KKIA  + KIEKME+  + 
Sbjct: 761  EELKSTLKELKTDLDRAKKGKPPLKGADGKQKRSLTPEAIEKKIATTNQKIEKMEMAMKT 820

Query: 604  KEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            KEDLKTVALGTSKINYLDPRI+VAWCKRHEVPI+KIFNKSLLAKF W+MDVDP FRF
Sbjct: 821  KEDLKTVALGTSKINYLDPRITVAWCKRHEVPIDKIFNKSLLAKFTWAMDVDPQFRF 877


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  893 bits (2307), Expect = 0.0
 Identities = 480/797 (60%), Positives = 548/797 (68%), Gaps = 18/797 (2%)
 Frame = -2

Query: 2770 SMEVEKICMHSKGDNFTSGSAGNMDLSKSNIK-SENSDDDKPLSLKYSSSGI------VN 2612
            S +V+    H          +  + L+ + I  SE+SDD KPLSL++S+S        V+
Sbjct: 130  SFKVKPFNQHKSATVIKEEKSSPLRLASAIINDSEDSDDGKPLSLRHSASSSKGNTNQVS 189

Query: 2611 RSASLQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXK---PLLSRFQSKAIGGSSMKD- 2444
            +  S    + S   KPL     L                  PL  + Q     GS+M+D 
Sbjct: 190  KEGSKPENEDSDDEKPLSSRFPLKSGVGESTSKAYDSDDDKPLAKKLQHN---GSAMRDG 246

Query: 2443 -----SNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQKRPLSGANPADSSSIKXXXXXXD 2279
                 SN++                             +  +   P   +         D
Sbjct: 247  QPNKYSNMSNKRPPGDIKSSNQLSVKKPKLSSVTAPTNKKQASVKPEPKAE------DDD 300

Query: 2278 NDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGS 2099
            +DHLPI+QR+KK+ +S S S S                                 +PP S
Sbjct: 301  DDHLPISQRIKKSPTSESKSSSIKKTTKVVSSSVKKVNKKSKKVMKNSKYSKSSKVPPSS 360

Query: 2098 GGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQ 1919
            G G+KW  LEHNGVIFPPPYKPHG+KMLYKG+PVDLTPEQEEVATMFAVM DTDY +K +
Sbjct: 361  GEGKKWNKLEHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMNKPR 420

Query: 1918 FIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXX 1739
            F ENF  DW+ +LGKNH+I+  E CDF+PIYEWH  EKEKKKQMT+              
Sbjct: 421  FKENFFGDWKKILGKNHVIQNLENCDFSPIYEWHQSEKEKKKQMTTEEKKALKEEKLKQE 480

Query: 1738 XKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPEC 1559
             KYMWA VDG KEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DITINIGKDAPIPEC
Sbjct: 481  EKYMWAWVDGKKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCDITINIGKDAPIPEC 540

Query: 1558 PIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDY 1379
            P+PGERWKE++HDNTVTWLAFWNDPINPKEFKYVFLAASS+LKG SDKEKYEKARLLKDY
Sbjct: 541  PVPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGLSDKEKYEKARLLKDY 600

Query: 1378 IQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEL 1199
            IQ IRA YT+DF SKDPTK+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 
Sbjct: 601  IQGIRAAYTKDFASKDPTKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEP 660

Query: 1198 VPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSK 1019
            VPPN LKFDFLGKDSIRY N VEVE  V+KAI  F++ K  +              DTSK
Sbjct: 661  VPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGS-------SDLFDLLDTSK 713

Query: 1018 LNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQ 839
            LN HLKELMPGLTAKVFRTYNASITLD +L++ETK G   EK+ VYQHANKEVAIICNHQ
Sbjct: 714  LNAHLKELMPGLTAKVFRTYNASITLDDMLSRETKGGDVAEKVVVYQHANKEVAIICNHQ 773

Query: 838  RSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDK--EGKTKKNLAPEAI 665
            R+VSKSH  QM +LNEKI +LKA  EEL +DL+R +KGKPPLK K  +GK K+NL PE++
Sbjct: 774  RTVSKSHSAQMLRLNEKIEELKAVVEELKSDLSRVKKGKPPLKSKNADGKPKRNLNPESL 833

Query: 664  GKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKS 485
             KKIAQ +AKIEKME DK+ KEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKS
Sbjct: 834  EKKIAQTNAKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 893

Query: 484  LLAKFAWSMDVDPNFRF 434
            LLAKF W+MDVDP+FRF
Sbjct: 894  LLAKFTWAMDVDPSFRF 910


>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
          Length = 927

 Score =  891 bits (2303), Expect = 0.0
 Identities = 474/763 (62%), Positives = 546/763 (71%), Gaps = 15/763 (1%)
 Frame = -2

Query: 2677 KSENSDDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXK 2498
            +SE+S+D+KPLS +++S   +  S S    K+  S +  PL+ K+               
Sbjct: 188  ESEDSEDEKPLSRRFTSKSSLGESTS----KSYDSDEKKPLAAKVQQNGSVSRDGPMNKS 243

Query: 2497 PLLSRFQS----KAIGGSSMKD-------SNVAEXXXXXXXXXXXXXXXXXXXXXXXKGG 2351
              LS  +     K++  SS+K        ++++                        + G
Sbjct: 244  ASLSNKRPPGEVKSLNQSSVKKPKLSSPITSISNKQAAVKPEPEPKAEDDDDNIPLSQRG 303

Query: 2350 QKRPLSGANPADSSSIKXXXXXXDNDHLPIAQRMKKT---VSSNSASISKNALHXXXXXX 2180
            +K   + + P D           D+D++PIAQR+KK+   VS +SA + K +        
Sbjct: 304  KKSQAATSKPKDE----------DDDNVPIAQRIKKSPASVSKSSAPVKKAST--VVSPS 351

Query: 2179 XXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQP 2000
                                  +PPGSG GQKWTTL HNGVIFPPPY PHGVKMLYK QP
Sbjct: 352  LKKVNKNSKKVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYNPHGVKMLYKRQP 411

Query: 1999 VDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEW 1820
            + LTPEQEEVATMFAVM DTDY +K +F ENF  DW+ MLGKNH I+  E CDF PIYEW
Sbjct: 412  ITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEW 471

Query: 1819 HLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP 1640
            H +EKEKKKQMT+               KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP
Sbjct: 472  HQQEKEKKKQMTTEEKKALKEDKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP 531

Query: 1639 KMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKY 1460
            KMGKLK+RIRP+DITINIGKDAPIPECPIPGERWKE+++DNTVTWLAFW DPIN KEFKY
Sbjct: 532  KMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAFWIDPINQKEFKY 591

Query: 1459 VFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDF-NSKDPTKRQIAVATYLIDKL 1283
            VFLAASS+LKGQSDKEKYEKARLLKDYI  IRA YT+DF N+KDP K+QIAVATYLIDKL
Sbjct: 592  VFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKL 651

Query: 1282 ALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAI 1103
            ALRAGNEKDDDEADTVGCCTLKVENVE VPPN LKFDFLGKDSIRY N V+VEP V+KAI
Sbjct: 652  ALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAI 711

Query: 1102 GDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNK 923
              F++ K  +               TSKLN HLKELMPGLTAKVFRTYNASITLD +L+K
Sbjct: 712  QQFRSGKEGSEDLFDRLD-------TSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 764

Query: 922  ETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDL 743
            ETK G   EK+ VYQHANKEVAIICNHQR+VSKSH  QMS+LNEKI++LK   EEL TDL
Sbjct: 765  ETKGGEVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTAMEELKTDL 824

Query: 742  NRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKI 563
            +R +KGKPP K  +GK K+NL PEA+ +K+AQI+AKIEKME DK+ KEDLKTVALGTSKI
Sbjct: 825  SRVKKGKPPSKGADGKPKRNLNPEALERKMAQINAKIEKMERDKETKEDLKTVALGTSKI 884

Query: 562  NYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            NYLDPRI+VAWCKRHEVPIEKIFNKSLLAKFAWSMDVDP+FRF
Sbjct: 885  NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 927


>gb|EMJ02410.1| hypothetical protein PRUPE_ppa001622mg [Prunus persica]
          Length = 790

 Score =  888 bits (2294), Expect = 0.0
 Identities = 471/778 (60%), Positives = 540/778 (69%), Gaps = 26/778 (3%)
 Frame = -2

Query: 2689 KSNIKSENSDDD---KPLSLKYSSSGIVNRSASLQ--AVKASQSTKPLPLSVKLXXXXXX 2525
            +SN KS+ +  D   K L ++  S+ I   S S++  A + S S    P+  +L      
Sbjct: 24   RSNAKSKQNQLDGQLKQLPVQNKSTTIKEESNSIEHPAEENSDSEDAKPIKARLGKPCED 83

Query: 2524 XXXXXXXXKPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQK 2345
                     PL SR   K +G S  +  +  E                           K
Sbjct: 84   SDDDK----PLSSRITPKKVGTSGSQPCDSKERKPVASKVQKNCSSTTDKGKTSYVISTK 139

Query: 2344 RPLSGANPADSSSIKXXXXXX--------------------DNDHLPIAQRMKKTVSSNS 2225
            RPL  AN ++ SS K                          D+D +PI+QR+KK  S N 
Sbjct: 140  RPLDKANISEKSSAKRPKVSDSSTSIKNMQVSAKKEPKGEDDDDFIPISQRIKKATSDNK 199

Query: 2224 ASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQK-WTTLEHNGVIFP 2048
            + ++K  L                             +PP S  GQK WT+L HNGVIFP
Sbjct: 200  SPVTKQKLTKVRPSSIKKKIKKGQKASQFSKYSKSTTVPPSSNDGQKKWTSLVHNGVIFP 259

Query: 2047 PPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNH 1868
            PPYKPHGVKMLY G+PV L+PEQEEVATM+AVMKDTDY  K+ F  NF +DW  +LGKNH
Sbjct: 260  PPYKPHGVKMLYSGKPVTLSPEQEEVATMYAVMKDTDYVQKQTFRNNFWNDWHKLLGKNH 319

Query: 1867 IIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGN 1688
            II+K + CDFTPIY+W+  EKEKKKQM++               KYMWA+VDGVKEKVGN
Sbjct: 320  IIQKLDACDFTPIYDWYQNEKEKKKQMSTEEKKALKEDKLKEEEKYMWAVVDGVKEKVGN 379

Query: 1687 FRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVT 1508
            FRVEPPGLFRGRGEHPK GKLK+RIRP D+TINIGKDAPIPECPIPGE WKE++HDNTVT
Sbjct: 380  FRVEPPGLFRGRGEHPKSGKLKRRIRPSDVTINIGKDAPIPECPIPGESWKEVRHDNTVT 439

Query: 1507 WLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDP 1328
            WLAFWNDPIN +EFKYVFLA SSSLKGQSDKEKYEKAR+LKDYI NIRA YTRDF SKD 
Sbjct: 440  WLAFWNDPINQREFKYVFLAPSSSLKGQSDKEKYEKARMLKDYIGNIRAAYTRDFTSKDG 499

Query: 1327 TKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIR 1148
            TKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV+ + PN L+F+FLGKDSIR
Sbjct: 500  TKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKAIAPNSLEFNFLGKDSIR 559

Query: 1147 YLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVF 968
            Y NTVEVE PVYKAI  FQT KR                DTSKLN HLKELMPGLTAKVF
Sbjct: 560  YENTVEVEIPVYKAIIQFQTGKRG-------CDDLFDRLDTSKLNAHLKELMPGLTAKVF 612

Query: 967  RTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEK 788
            RTYNASITLD ILNKETK+G   EK+ VYQHANKEVAIICNHQR++SK+H  QMS+L EK
Sbjct: 613  RTYNASITLDNILNKETKEGDLSEKVVVYQHANKEVAIICNHQRTISKTHSAQMSRLLEK 672

Query: 787  INDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQ 608
            I +L++  +EL TDL+RA+KG+PPLKD +GK K+NL PEA+ +KIAQ   KIEKME+D +
Sbjct: 673  IGNLQSILKELKTDLDRAKKGRPPLKDADGKQKRNLTPEALERKIAQTTVKIEKMELDMR 732

Query: 607  IKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
             KEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSLLAKFAWSMDVDP+FRF
Sbjct: 733  TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPDFRF 790


>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
          Length = 925

 Score =  887 bits (2291), Expect = 0.0
 Identities = 470/754 (62%), Positives = 539/754 (71%), Gaps = 6/754 (0%)
 Frame = -2

Query: 2677 KSENSDDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXK 2498
            +SE+S+D+KPLS +++S   +  S S    K+  S +  PL+ K+               
Sbjct: 188  ESEDSEDEKPLSCRFTSKSSLGESTS----KSYDSDEKKPLAAKVQQNGSASRDGPMNKS 243

Query: 2497 PLLSRF----QSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQKRPLSG 2330
              LS      ++K++  SS+K   ++                              PLS 
Sbjct: 244  ASLSNKRPPGEAKSLNQSSVKKPKLSSPITSISNKQAAVKPEPKAEDDD----DNIPLSQ 299

Query: 2329 ANPADSSSIKXXXXXXDNDHLPIAQRMKKTVSSNS-ASISKNALHXXXXXXXXXXXXXXX 2153
                 S S        D+D++PI+QR+KK+ +S S +S+                     
Sbjct: 300  RGKK-SQSATSKPKDDDDDNVPISQRIKKSPASVSKSSVPVKKASTVVSSSLKKVNKNSK 358

Query: 2152 XXXXXXXXXXXXXMPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEE 1973
                         +PPGSG GQKWTTL HNGVIFPPPYKPHGVKMLYK QP+ LTPEQEE
Sbjct: 359  KVIKKTAYTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEE 418

Query: 1972 VATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKK 1793
            VATMFAVM DTDY +K  F ENF  DW+ +LGKNH+I+  E CDF PIYEWH +EKEKKK
Sbjct: 419  VATMFAVMLDTDYMNKPCFKENFFSDWKKILGKNHMIQNLEDCDFGPIYEWHQQEKEKKK 478

Query: 1792 QMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRI 1613
            QMT+               KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI
Sbjct: 479  QMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI 538

Query: 1612 RPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSL 1433
            RP+DITINIGKDAPIPECPIPGERWKE+++ NTVTWLA+WNDPIN KEFKYVFLAASS+L
Sbjct: 539  RPRDITINIGKDAPIPECPIPGERWKEVRNGNTVTWLAYWNDPINQKEFKYVFLAASSTL 598

Query: 1432 KGQSDKEKYEKARLLKDYIQNIRANYTRDF-NSKDPTKRQIAVATYLIDKLALRAGNEKD 1256
            KGQSDKEKYEKARLLKDYI  IRA YT+DF N+KDP K+QIAVATYLIDKLALRAGNEKD
Sbjct: 599  KGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKD 658

Query: 1255 DDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRS 1076
            DDEADTVGCCTLKVENVE VPPN LKFDFLGKDSIRY N V+VEP V+KAI  F++ K  
Sbjct: 659  DDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEG 718

Query: 1075 NXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPE 896
            +               TSKLN HLKELMPGLTAKVFRTYNASITLD +L+KETK G   E
Sbjct: 719  SEDLFDRLD-------TSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSKETKGGEVAE 771

Query: 895  KIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPP 716
             + VYQHANKEVAIICNHQR+VSKSH  QMS+LNEKI++LK   EEL TDL+RA+KGKPP
Sbjct: 772  NVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTDLSRAKKGKPP 831

Query: 715  LKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISV 536
             K  +GK K+NL PEA+ +KI Q +AKIEKME DK+ KEDLKTVALGTSKINYLDPRI+V
Sbjct: 832  TKGADGKAKRNLNPEALERKITQTNAKIEKMERDKETKEDLKTVALGTSKINYLDPRITV 891

Query: 535  AWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            AWCKRHEVPIEKIFNKSLLAKFAWSMDVDP+FRF
Sbjct: 892  AWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 925


>gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]
          Length = 949

 Score =  885 bits (2287), Expect = 0.0
 Identities = 466/770 (60%), Positives = 544/770 (70%), Gaps = 24/770 (3%)
 Frame = -2

Query: 2671 ENSDDDKPLSLKYS-SSGIVNRSAS-----------LQAVKASQSTKPLP--LSVKLXXX 2534
            ++ DD KPL  +++ + G  N S S           +Q+   S+  KPL   L       
Sbjct: 188  DSDDDHKPLVQRFNPAKGASNNSTSKPVLFKAAPKIVQSDDDSEDEKPLASRLPTNAAPK 247

Query: 2533 XXXXXXXXXXXKPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKG 2354
                       KPL +RF S+   G+S   SN  +                         
Sbjct: 248  SRASTSDSEDEKPLSARF-SRGTAGTSASISNSKDKLPSNNKGPSINSSAPRNSVKRPSD 306

Query: 2353 GQKRPLSGA-------NPADSSSIKXXXXXXDNDHLPIAQRMKKTVSSNSASISKNALHX 2195
                  S A       + + S S+K      DN+ +P+ +++    SS S    KN +  
Sbjct: 307  NNNNQTSSALKKAKSSDASASGSVKRESKVDDNNSVPVERKLTPGESSKSKPPVKNIVKK 366

Query: 2194 XXXXXXXXXXXXXXXXXXXXXXXXXXXM---PPGSGGGQKWTTLEHNGVIFPPPYKPHGV 2024
                                           PPGSGGG+KW+TLEHNGVIFPPPY PHGV
Sbjct: 367  SPLSVKKDNKKFKTKTKKTMKSSQFSKSLRVPPGSGGGKKWSTLEHNGVIFPPPYNPHGV 426

Query: 2023 KMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELC 1844
            KMLY GQPV+LTPE+EEVATMFAVMKDT+YA+KK FI+NF  DW+ +LGKNHIIKKFELC
Sbjct: 427  KMLYNGQPVELTPEEEEVATMFAVMKDTEYAAKKTFIDNFFGDWKKILGKNHIIKKFELC 486

Query: 1843 DFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGL 1664
            DFTPIYEWHL+EKEKKKQMTS               KYMWA+VDGV+EKVGNFRVEPPGL
Sbjct: 487  DFTPIYEWHLREKEKKKQMTSEERKALREEKLKQEEKYMWAVVDGVREKVGNFRVEPPGL 546

Query: 1663 FRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDP 1484
            FRGRGEHPKMGKLK+RIRP DITINIGK  P+PECPI GE WKE+KHDNTVTWLAFWNDP
Sbjct: 547  FRGRGEHPKMGKLKRRIRPSDITINIGKGTPVPECPIEGESWKEVKHDNTVTWLAFWNDP 606

Query: 1483 INPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVA 1304
            I+ K+FKYVFLAASSSLKGQSDKEKYEK+R LKD+I NIR NYT+DFNSKD +K+QIAVA
Sbjct: 607  ISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKDHIHNIRVNYTKDFNSKDVSKKQIAVA 666

Query: 1303 TYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVE 1124
            TYLIDKLALRAGNEKDDDEADTVGCCTLKV+NV  VPPNKL+FDFLGKDSIRY NTVEVE
Sbjct: 667  TYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVE 726

Query: 1123 PPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASIT 944
             PVY AI +F+T K+                DT+KLN HLK+LMPGLTAKVFRTYNASIT
Sbjct: 727  LPVYNAIEEFRTGKKDG-------DAVFDQLDTTKLNHHLKDLMPGLTAKVFRTYNASIT 779

Query: 943  LDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQR 764
            LDAIL++ET+DGT  EKIAVYQ ANKEVAIICNHQR+VSKSH+ QM+KLNEKI++LKAQ 
Sbjct: 780  LDAILHEETEDGTLLEKIAVYQRANKEVAIICNHQRAVSKSHDTQMTKLNEKIDELKAQI 839

Query: 763  EELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTV 584
             EL+ DL + ++GKP     +GK K+ LAPEAI KKI+QI+ K+EKME+DK+ KEDLKTV
Sbjct: 840  NELNKDLGKVKRGKPLGNGADGKPKRALAPEAIEKKISQIETKVEKMEMDKKTKEDLKTV 899

Query: 583  ALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 434
            ALGTSKINYLDPRI+VAWCK HEVPIEKIF+K++LAKF W+MDV+P+FRF
Sbjct: 900  ALGTSKINYLDPRITVAWCKTHEVPIEKIFSKTILAKFGWAMDVEPDFRF 949


>gb|EMS46223.1| DNA topoisomerase 1 [Triticum urartu]
          Length = 947

 Score =  884 bits (2283), Expect = 0.0
 Identities = 428/559 (76%), Positives = 484/559 (86%)
 Frame = -2

Query: 2110 PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYA 1931
            PPGSGGG+KW+TLEHNGVIFPPPY PHGVKMLY GQPV+LTPE+EEVATMFAVMKDT+YA
Sbjct: 396  PPGSGGGKKWSTLEHNGVIFPPPYNPHGVKMLYNGQPVELTPEEEEVATMFAVMKDTEYA 455

Query: 1930 SKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXX 1751
            +KK FI+NF  DW+ +LGKNHIIKKFELCDFTPIYEWHL+EKEKKKQMTS          
Sbjct: 456  TKKTFIDNFFGDWKKILGKNHIIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALREEK 515

Query: 1750 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAP 1571
                 KYMWA+VDGV+EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DITINIGK  P
Sbjct: 516  LKQEEKYMWAVVDGVREKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKGTP 575

Query: 1570 IPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARL 1391
            +PECPI G+ WKE+KHDNTVTWLAFWNDPI+ K+FKYVFLAASSSLKGQSDKEKYEK+R 
Sbjct: 576  VPECPIEGQSWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRK 635

Query: 1390 LKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1211
            LKD+I NIR NYT+DFNSKD +K+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+
Sbjct: 636  LKDHIHNIRVNYTKDFNSKDVSKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVD 695

Query: 1210 NVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXX 1031
            NV  VPPNKL+FDFLGKDSIRY NTVEVE PVY AI +F+T K+                
Sbjct: 696  NVTCVPPNKLQFDFLGKDSIRYFNTVEVELPVYNAIEEFRTGKKDG-------DAVFDQL 748

Query: 1030 DTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAII 851
            DT+KLN HLK+LMPGLTAKVFRTYNASITLDAIL++ET+DGT  EKIAVYQ ANKEVAII
Sbjct: 749  DTTKLNHHLKDLMPGLTAKVFRTYNASITLDAILHEETEDGTLLEKIAVYQRANKEVAII 808

Query: 850  CNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPE 671
            CNHQR+VSKSH+ QM+KLNEKI++LKAQ +EL+ DL + ++GKP     +GK K+ LAPE
Sbjct: 809  CNHQRAVSKSHDTQMTKLNEKIDELKAQVDELNKDLGKVKRGKPLGNGADGKPKRTLAPE 868

Query: 670  AIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFN 491
            AI KKI+QI+ KIEKME+DK+ KEDLKTVALGTSKINYLDPRI+VAWCK HEVPIEKIF+
Sbjct: 869  AIEKKISQIETKIEKMEMDKKTKEDLKTVALGTSKINYLDPRITVAWCKTHEVPIEKIFS 928

Query: 490  KSLLAKFAWSMDVDPNFRF 434
            K++LAKF W+MDV+P+FRF
Sbjct: 929  KTILAKFGWAMDVEPDFRF 947