BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00008516
         (2739 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28022.3| unnamed protein product [Vitis vinifera]              682   0.0  
ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chlorop...   672   0.0  
gb|EMJ04984.1| hypothetical protein PRUPE_ppa001872mg [Prunus pe...   662   0.0  
ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chlorop...   657   0.0  
gb|EXB59798.1| CRS2-associated factor 1 [Morus notabilis]             655   0.0  
ref|XP_004239268.1| PREDICTED: CRS2-associated factor 1, chlorop...   650   0.0  
ref|XP_004287455.1| PREDICTED: CRS2-associated factor 1, chlorop...   650   0.0  
ref|XP_002535109.1| conserved hypothetical protein [Ricinus comm...   648   0.0  
ref|XP_006338151.1| PREDICTED: CRS2-associated factor 1, chlorop...   644   0.0  
ref|XP_006389456.1| hypothetical protein POPTR_0024s00430g [Popu...   643   0.0  
gb|EOY30694.1| RNA-binding CRS1 / YhbY domain-containing protein...   639   e-180
ref|XP_002332503.1| predicted protein [Populus trichocarpa]           636   e-179
ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arab...   598   e-168
ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]...   583   e-163
ref|XP_006494323.1| PREDICTED: CRS2-associated factor 1, chlorop...   580   e-163
ref|XP_006451251.1| hypothetical protein CICLE_v100106541mg, par...   580   e-163
ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chlorop...   579   e-162
gb|ESW32299.1| hypothetical protein PHAVU_002G310400g [Phaseolus...   573   e-160
gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indi...   570   e-159
ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group] g...   568   e-159

>emb|CBI28022.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  682 bits (1759), Expect = 0.0
 Identities = 391/741 (52%), Positives = 474/741 (63%), Gaps = 14/741 (1%)
 Frame = -1

Query: 2664 EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXGLDFPHSSPA 2485
            EVRFSRWNNANAE F  R R QKEIED IRR RR  SA+RI               ++  
Sbjct: 24   EVRFSRWNNANAERFTLRERAQKEIEDNIRRERRFDSATRIADIDDAGTSK---EAAAAG 80

Query: 2484 DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRR-TYRTRIP-PQVDGES--GI 2317
             F+S GTPSSPS  SIPG++SKYSK    + +  HPAFR+ + RT++P P +  E+  GI
Sbjct: 81   TFKSTGTPSSPSKPSIPGKSSKYSK----NSKTSHPAFRQISRRTKLPGPNISPEAKRGI 136

Query: 2316 TVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAPLPPSK 2137
            ++GE+G++Y + G PFE +YSYTETPKVKP+ LRE PFL             RAPLPPSK
Sbjct: 137  SIGEDGVSYMVPGVPFELRYSYTETPKVKPIALREPPFLPFGPDTMPRPWTGRAPLPPSK 196

Query: 2136 KKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKG 1957
            KKL EFDSF LPPPGKK VK +Q+PGPF+ GSGP+Y   SREEILGEPLT+EE+K+L++G
Sbjct: 197  KKLKEFDSFQLPPPGKKRVKPVQAPGPFLPGSGPRY-VRSREEILGEPLTEEEIKELVQG 255

Query: 1956 CMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKI 1777
            C+K++RQLNMGRDGLTHNMLDNIHAHWKRRRVCKI+C GV TVDMDNVRQQLEEKTGGK+
Sbjct: 256  CVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKV 315

Query: 1776 IYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGR 1597
            IY KGGV+FLFRGRNYNYR RPRFPLMLWKPVTPVYPRLVQR PEGLTLEEA  MRK+GR
Sbjct: 316  IYGKGGVLFLFRGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGR 375

Query: 1596 QLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLS 1417
            +L+PICKL KNGVY  LV  VREAFE CELVRINCQG+N SDY+KIGAKLKDLVPCVL+S
Sbjct: 376  KLIPICKLAKNGVYTDLVNNVREAFEECELVRINCQGLNASDYRKIGAKLKDLVPCVLIS 435

Query: 1416 FEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMFDVSAXXXX 1237
            FEHEHILMW G DWK   P+ ED    A E                F  +    S     
Sbjct: 436  FEHEHILMWRGSDWKFLHPKPEDGCKEAKE----SDNNSEASIPPPFEGQELSASC---- 487

Query: 1236 XXXXXXXXXTKAEDLDAHLEVVET-AYVSKSQDTDDDLSRETASSSDEITNMTSG---FS 1069
                     +K    D  L++++T A    ++D   D + + +S  ++I +       F+
Sbjct: 488  --------SSKISVKDTSLDMLDTIASPVINEDVAMDKTEDLSSKGNDILSFEGNDKPFA 539

Query: 1068 NHQDPSTTY-LDTSSSGSGCHAELCEDENQDEDSADIVGSARHDGDDAS---TRLDTTGV 901
              Q   T Y  DT S  +G         N+ E     + +A H  D+++     LDT   
Sbjct: 540  ATQLVKTAYNWDTVSDDTG-------GTNESEIILTKLDNAHHADDESAAMPVELDT--- 589

Query: 900  NVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFAKTA 721
                 M EN  +    P   G+  LL+QAVD GSA++LD D S +A+IVY   V F+K A
Sbjct: 590  -----MLENGSIKNDAPCTGGLLLLLKQAVDSGSAVVLDGD-SCDADIVYGKTVAFSKDA 643

Query: 720  PPGPIFRHRTKKATEQAAEQEKHQG--IGQIEEVEMVANSNRKREGXXXXXXXXRDKLPE 547
            PPGP+FR R +KA  Q  E+E+ +   +G+I        S  K              L  
Sbjct: 644  PPGPVFR-RPRKAAVQKCEKEEPRDLVVGKIVTAPEKGRSQSKSSRNQIAKDFKEGYLDV 702

Query: 546  ILLDVVPHGSLGVDELAKLLS 484
                V   G+LGVDELAKLL+
Sbjct: 703  DYPGVGTRGTLGVDELAKLLA 723


>ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
          Length = 752

 Score =  672 bits (1735), Expect = 0.0
 Identities = 392/762 (51%), Positives = 479/762 (62%), Gaps = 35/762 (4%)
 Frame = -1

Query: 2664 EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXGLDFPHSSPA 2485
            EVRFSRWNNANAE F  R R QKEIED IRR RR  SA+RI               ++  
Sbjct: 24   EVRFSRWNNANAERFTLRERAQKEIEDNIRRERRFDSATRIADIDDAGTSK---EAAAAG 80

Query: 2484 DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRR-TYRTRIP-PQVDGES--GI 2317
             F+S GTPSSPS  SIPG++SKYSK    + +  HPAFR+ + RT++P P +  E+  GI
Sbjct: 81   TFKSTGTPSSPSKPSIPGKSSKYSK----NSKTSHPAFRQISRRTKLPGPNISPEAKRGI 136

Query: 2316 TVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAPLPPSK 2137
            ++GE+G++Y + G PFE +YSYTETPKVKP+ LRE PFL             RAPLPPSK
Sbjct: 137  SIGEDGVSYMVPGVPFELRYSYTETPKVKPIALREPPFLPFGPDTMPRPWTGRAPLPPSK 196

Query: 2136 KKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKG 1957
            KKL EFDSF LPPPGKK VK +Q+PGPF+ GSGP+Y   SREEILGEPLT+EE+K+L++G
Sbjct: 197  KKLKEFDSFQLPPPGKKRVKPVQAPGPFLPGSGPRY-VRSREEILGEPLTEEEIKELVQG 255

Query: 1956 CMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKI 1777
            C+K++RQLNMGRDGLTHNMLDNIHAHWKRRRVCKI+C GV TVDMDNVRQQLEEKTGGK+
Sbjct: 256  CVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKV 315

Query: 1776 IYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGR 1597
            IY KGGV+FLFRGRNYNYR RPRFPLMLWKPVTPVYPRLVQR PEGLTLEEA  MRK+GR
Sbjct: 316  IYGKGGVLFLFRGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGR 375

Query: 1596 QLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLS 1417
            +L+PICKL KNGVY  LV  VREAFE CELVRINCQG+N SDY+KIGAKLKDLVPCVL+S
Sbjct: 376  KLIPICKLAKNGVYTDLVNNVREAFEECELVRINCQGLNASDYRKIGAKLKDLVPCVLIS 435

Query: 1416 FEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMFDVSAXXXX 1237
            FEHEHILMW G DWK   P+ ED    A E                F  +    S     
Sbjct: 436  FEHEHILMWRGSDWKFLHPKPEDGCKEAKE----SDNNSEASIPPPFEGQELSASC---- 487

Query: 1236 XXXXXXXXXTKAEDLDAHLEVVET-AYVSKSQDTDDDLSRETASSSDEITNMTSG---FS 1069
                     +K    D  L++++T A    ++D   D + + +S  ++I +       F+
Sbjct: 488  --------SSKISVKDTSLDMLDTIASPVINEDVAMDKTEDLSSKGNDILSFEGNDKPFA 539

Query: 1068 NHQDPSTTY-LDTSSSGSGCHAELCEDENQDEDSADIVGSARHDGDDAS---TRLDTTGV 901
              Q   T Y  DT S  +G         N+ E     + +A H  D+++     LDT   
Sbjct: 540  ATQLVKTAYNWDTVSDDTG-------GTNESEIILTKLDNAHHADDESAAMPVELDTMLE 592

Query: 900  N----------VGMEMEENNCLPE-----------QKPWLDGVTFLLRQAVDDGSALILD 784
            N          V  +M++   +P+             P   G+  LL+QAVD GSA++LD
Sbjct: 593  NGSIKNELMDAVTHDMDKLQDIPKASQDCGKMTGSSAPCTGGLLLLLKQAVDSGSAVVLD 652

Query: 783  DDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQG--IGQIEEVEMVAN 610
             D S +A+IVY   V F+K APPGP+FR R +KA  Q  E+E+ +   +G+I        
Sbjct: 653  GD-SCDADIVYGKTVAFSKDAPPGPVFR-RPRKAAVQKCEKEEPRDLVVGKIVTAPEKGR 710

Query: 609  SNRKREGXXXXXXXXRDKLPEILLDVVPHGSLGVDELAKLLS 484
            S  K              L      V   G+LGVDELAKLL+
Sbjct: 711  SQSKSSRNQIAKDFKEGYLDVDYPGVGTRGTLGVDELAKLLA 752


>gb|EMJ04984.1| hypothetical protein PRUPE_ppa001872mg [Prunus persica]
          Length = 750

 Score =  662 bits (1707), Expect = 0.0
 Identities = 385/755 (50%), Positives = 478/755 (63%), Gaps = 28/755 (3%)
 Frame = -1

Query: 2664 EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXGLDFPHSSPA 2485
            EVRF+RWNNANAE F  RRR Q+EIED+IRR RR  SA+RI               ++  
Sbjct: 32   EVRFARWNNANAEKFNERRRAQQEIEDDIRRERRFDSATRIATIYDSATDTT----TTSE 87

Query: 2484 DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYR----TRIP----PQVDG 2329
             F+S GTPS PS+ SIPG+ SKYSK P + KE+ HPAFRR  R    ++IP    P VD 
Sbjct: 88   TFKSVGTPSFPSSPSIPGKKSKYSKNP-NPKES-HPAFRRIIRPTKLSKIPKDKGPTVDR 145

Query: 2328 ESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAPL 2149
            ++ I+VG++G++Y I GAPFEF+YSYTETPKVKPL LRE  +              RAPL
Sbjct: 146  KANISVGDDGLSYVIDGAPFEFKYSYTETPKVKPLKLREPAYAPFGPTTMARPWTGRAPL 205

Query: 2148 PPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKD 1969
            PPSKKKL EFDSF LPPP KKGVK +QSPGP++ GSGPKY   SR+EILG+PLT EEVK+
Sbjct: 206  PPSKKKLKEFDSFQLPPPHKKGVKPVQSPGPYLPGSGPKY-VKSRDEILGDPLTPEEVKE 264

Query: 1968 LIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKT 1789
            L+KGC+KTRRQLNMGRDG THNMLDNIHAHWKRRRVCKI+C GV TVDMDNV +Q+EEKT
Sbjct: 265  LVKGCIKTRRQLNMGRDGFTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCEQIEEKT 324

Query: 1788 GGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMR 1609
            GGKIIY KGGVI+LFRGRNYNY+TRP+FPLMLW+P+TPVYPRLVQR PEGLTLEEAT+MR
Sbjct: 325  GGKIIYRKGGVIYLFRGRNYNYKTRPQFPLMLWRPITPVYPRLVQRAPEGLTLEEATEMR 384

Query: 1608 KRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPC 1429
            K+GR L+PICKLGKNGVY+ L    REAFE CELVRINC GMN SDY+KIGAKLKDLVPC
Sbjct: 385  KKGRNLIPICKLGKNGVYSELAKNAREAFEECELVRINCTGMNGSDYRKIGAKLKDLVPC 444

Query: 1428 VLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMFDVSA 1249
            VL+SFE EHILMW G++WKS++P  E   N   E                  +E     A
Sbjct: 445  VLISFELEHILMWRGREWKSSIPYPE---NDLKEVKGSDVDDSTSIAPPLEGQEESTSCA 501

Query: 1248 XXXXXXXXXXXXXTKAEDLDAHLEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSGFS 1069
                               DA LE++ T+  S   +         A  S +++      S
Sbjct: 502  STVSVK-------------DASLEILNTSTPSIGSEV------VGAEESGDLSP-----S 537

Query: 1068 NHQDPSTTYLDTSSSGSGCHAELCEDENQDEDSADIVGSARHD---------GDDASTRL 916
             + +P  T +D  S+  G H      + +D++S  I+  +  D          D+AS   
Sbjct: 538  QYVEPCAT-VDGVSAVGGTHVTETISDVEDDESKAILDPSGIDRILDNTGCAADEASPTT 596

Query: 915  DTTGVNVGMEME------ENNCLPEQK--PWLDGVTFLLRQAVDDGSALILDDDASSNAN 760
             T G       +      EN   P +   P ++ V  LL +AV  GSALILDD A  +A+
Sbjct: 597  VTGGPRSNENPQCASVSSENLSEPARSSGPCMENVLLLLNEAVGSGSALILDDSA-LDAD 655

Query: 759  IVYQSAVEFAKTAPPGPIFR-HRTKKATEQAAEQ--EKHQGIGQIEEVEMVANSNRKREG 589
            I++Q AV  A++APPGP+F+ HR KK   Q   +  ++   + +++E+ +      ++  
Sbjct: 656  IIFQRAVALAQSAPPGPVFKHHRPKKVAVQKRIKIMKQEASVSEVKEITVPVKRGSEKIQ 715

Query: 588  XXXXXXXXRDKLPEILLDVVPHGSLGVDELAKLLS 484
                         E L +VVP GSL VDELAKLL+
Sbjct: 716  MKDTKVKRTRDFGESLDNVVPQGSLRVDELAKLLA 750


>ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
            sativus] gi|449521361|ref|XP_004167698.1| PREDICTED:
            CRS2-associated factor 1, chloroplastic-like [Cucumis
            sativus]
          Length = 745

 Score =  657 bits (1695), Expect = 0.0
 Identities = 381/776 (49%), Positives = 488/776 (62%), Gaps = 24/776 (3%)
 Frame = -1

Query: 2739 LKFASPFPLFXXXXXXXXXXXXXXS-EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRR 2563
            LK   PFP+F                E+RFSRW NANAE F +RRR Q+EIEDEIRR RR
Sbjct: 3    LKLPFPFPIFTPQFNPNSTPSHRTLTEIRFSRWYNANAEKFEQRRRSQQEIEDEIRRERR 62

Query: 2562 HQSASRIXXXXXXXXXGLDFPHSS---PADFRSRGTPSSPSARSIPGRASKYSKPPVDSK 2392
              SA++I           D P S+      FRS GTPSSPS  SIPGR SKYSK P    
Sbjct: 63   FSSAAKIVDLCDS-----DSPSSAIDRNETFRSVGTPSSPSRPSIPGRKSKYSKNPNPDS 117

Query: 2391 EARHPAFRRTYRTRIPPQ---VDGESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLG 2221
             +      +T +T   P+   +  E+ +++ E+G++Y I GAPFEF+YSYTETPKVKP+ 
Sbjct: 118  PSPFRQVSKTKKTMNAPEERHIGVEANVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIK 177

Query: 2220 LREAPFLXXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGS 2041
            LRE P+              RAPLPPSKKKLPEFDSF LPP  KKGVK +Q+PGPF+AGS
Sbjct: 178  LRE-PYAPFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLPPKNKKGVKPVQAPGPFLAGS 236

Query: 2040 GPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRV 1861
            GPKY   SREEILGEPLTKEE+K LI+GC+ + RQLN+GRDGLTHNML+NIHA WKRRRV
Sbjct: 237  GPKY-VMSREEILGEPLTKEEIKALIRGCINSNRQLNIGRDGLTHNMLENIHALWKRRRV 295

Query: 1860 CKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPV 1681
            CKI+C GV TVDMDNV+QQLEE+TGGKIIYS+GG ++L+RGRNYNY+TRPRFPLMLWKP 
Sbjct: 296  CKIKCKGVCTVDMDNVKQQLEERTGGKIIYSRGGALYLYRGRNYNYKTRPRFPLMLWKPA 355

Query: 1680 TPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVR 1501
             PVYPRLV+ +P+GLTLEE T+MRK+GR+L+PICKLGKNGVY+ LV  VREAFE CELVR
Sbjct: 356  APVYPRLVKHIPDGLTLEEVTEMRKKGRKLIPICKLGKNGVYSALVKHVREAFEECELVR 415

Query: 1500 INCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGA---- 1333
            INCQG+N SD++KIGAKLKDLVPCVL+SFE EHIL+W G+DWKS+LP IE N  GA    
Sbjct: 416  INCQGLNGSDFRKIGAKLKDLVPCVLISFESEHILLWRGRDWKSSLPYIERNPEGAKAHG 475

Query: 1332 ---TEXXXXXXXXXXXXXXXSFSKEMFDVSAXXXXXXXXXXXXXTKAEDLDAHLEVV-ET 1165
               T                  S +  D+S              + + D+D+    + E+
Sbjct: 476  TDETTIVAPSIEQDVSVKNTLTSLDSEDLSTGGNEDPDSMIAEKSISADVDSLTTTMHES 535

Query: 1164 AYVSKSQDTD--DDLSRETASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHAEL--- 1000
             +VS  ++    DD    TA++S++                  LD+ S+ SG  +E+   
Sbjct: 536  NFVSYDEEATGLDDQKLHTATTSED------------------LDSWSTISGGESEIESG 577

Query: 999  CEDENQDEDSADIVGSARHDGDDASTRLDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLR 820
             E  + D D A+ +     D   A+   +T G+    E  +    P      DGV  LL+
Sbjct: 578  YEFSDSDFDEAEPMEQLEFDSIAATGNSETNGLYTS-EGSQALTKPTSNA-TDGVLQLLK 635

Query: 819  QAVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRH-RTKKATEQAAEQEKHQGI 643
            QAV++GSA++LD  +S +A+++YQ +V F+++APP P+F+H R KK     +E+E  + +
Sbjct: 636  QAVENGSAVVLDS-SSLDADVIYQQSVAFSQSAPPSPVFKHERRKKVAADKSEEETSREL 694

Query: 642  GQIEE---VEMVANSNRKREGXXXXXXXXRDKLPEILLDVVPHGSLGVDELAKLLS 484
               EE   V M   +++K++          +          P GSLGVDELAKLL+
Sbjct: 695  EVKEEETAVSMEVGNDKKKDSKTKKNKNFGE-----YNFSSPQGSLGVDELAKLLA 745


>gb|EXB59798.1| CRS2-associated factor 1 [Morus notabilis]
          Length = 792

 Score =  655 bits (1691), Expect = 0.0
 Identities = 394/814 (48%), Positives = 491/814 (60%), Gaps = 62/814 (7%)
 Frame = -1

Query: 2739 LKFASPFPLFXXXXXXXXXXXXXXS-EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRR 2563
            LK   PFP+F                E+RFSRWNNANAE F  RRR  ++IED+IRR RR
Sbjct: 3    LKLPIPFPIFAPHLNPSPPQYHRLPTELRFSRWNNANAEKFNERRRTLQQIEDDIRRQRR 62

Query: 2562 HQSASRIXXXXXXXXXGLDFPHS-SPAD--------FRSRGTPSSPSARSIPGRASKYSK 2410
              SA+RI           D P S SP+         F+S GTPSSPS  SIPG+ SKYSK
Sbjct: 63   FDSATRIS----------DIPDSASPSTAGSATGEFFKSIGTPSSPSRPSIPGKKSKYSK 112

Query: 2409 PPVDSKEAR-HPAFRRTYRTR---------IPPQ---VDGESGITVGENGIAYRIGGAPF 2269
             P  S ++R HPAFR   R R         +P     V+ ++ + VGE+G++Y I GAPF
Sbjct: 113  NPNPSFDSRSHPAFRPLRRVRKIAVKELSGLPKDKRDVERKADVRVGEDGVSYVIDGAPF 172

Query: 2268 EFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPGK 2089
            EF+YSYTETPK +P+ LREAP+              RAPLPPSKKKL EFDSF L PP K
Sbjct: 173  EFKYSYTETPKAQPVKLREAPYAPFGPTTMPRPWTGRAPLPPSKKKLKEFDSFRLSPPHK 232

Query: 2088 KGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLT 1909
            KGVK +Q+PGPF+ GSGPKY   SREEILGEPLT+EE+KDLI+GC KT+RQ+NMGRDGLT
Sbjct: 233  KGVKPVQAPGPFLPGSGPKY-VMSREEILGEPLTEEEIKDLIEGCRKTKRQMNMGRDGLT 291

Query: 1908 HNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNY 1729
            HNMLDNIHAHWKRRRVCKI+C GV TVDMDNV++QLEE+TGGKIIY KGGVIFLFRGRNY
Sbjct: 292  HNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVKEQLEERTGGKIIYGKGGVIFLFRGRNY 351

Query: 1728 NYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNR 1549
            NYRTRPRFPLMLWKPVTPVYPRLV+RVPEGLTLEEA +MRK+G +L+PICKLGKNGVY+ 
Sbjct: 352  NYRTRPRFPLMLWKPVTPVYPRLVKRVPEGLTLEEAKEMRKKGHKLMPICKLGKNGVYHN 411

Query: 1548 LVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKS 1369
            LV  VREAFE CELVRINCQGMN SDY+KIGAKLKDLVPCVLLSF  EHIL+W G DWKS
Sbjct: 412  LVKHVREAFEECELVRINCQGMNGSDYRKIGAKLKDLVPCVLLSFAFEHILIWRGCDWKS 471

Query: 1368 TLPEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMFDVSAXXXXXXXXXXXXXTKAEDLD 1189
            +LP++  + + A E                 S E  +V+              +    L+
Sbjct: 472  SLPKLVKDRDEAKESDVQIVTSVAP------SVEGEEVAMSTGSVNDASLELISTTSTLN 525

Query: 1188 AHLEVVET---------AYVSKSQDTDDDLSRETASSSDEITNMTSGFSNH--QDPSTTY 1042
               EV+ T          YV     T D  +     ++++I+++     +      +T+Y
Sbjct: 526  RSHEVIGTEGREDSSSVEYVEPCSTTGDVSNEIKTFATEKISDVQIPVDDRLGDTSNTSY 585

Query: 1041 LDTSSSGSGCHAELCEDENQDEDSADIVG----------------SARHDGDDASTRLDT 910
              T+S  SG +    +    D  S  ++G                SA  + D  +   + 
Sbjct: 586  NGTTSENSGSNGTRSDSIECDGLSTAMLGLDTIIPKVADGNAEMKSALFEADSLANEKEQ 645

Query: 909  TGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFA 730
                V  ++ +   L    P  +GV  LL+QAV  G A+ILD+D + ++++VYQ  V F+
Sbjct: 646  VPSEVLQDVNQPTRL--NAPCTEGVLSLLQQAVVGGLAIILDED-NLDSDVVYQRTVAFS 702

Query: 729  KTAPPGPIFRHRTKK--------ATEQAAEQEKHQGIGQIEEVEM----VANSNRKREGX 586
            ++APPGP+F+ R +K           +  E EK Q        E+    V   + K+   
Sbjct: 703  QSAPPGPVFKGRPRKMLPKKVMVKNSEVLENEK-QDTEDFAPKEIRTIYVKEGSGKKASK 761

Query: 585  XXXXXXXRDKLPEILLDVVPHGSLGVDELAKLLS 484
                    + L  +   VVP GSL VDELAKLL+
Sbjct: 762  ARRRKDFGENLDNV---VVPQGSLRVDELAKLLA 792


>ref|XP_004239268.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Solanum
            lycopersicum]
          Length = 766

 Score =  650 bits (1678), Expect = 0.0
 Identities = 382/760 (50%), Positives = 478/760 (62%), Gaps = 33/760 (4%)
 Frame = -1

Query: 2664 EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXGLDFPHSSPA 2485
            E+RFSRWNNANAE F+R  R QKEIEDEIR ++R  S   I             P S  A
Sbjct: 26   EIRFSRWNNANAEKFIRHERTQKEIEDEIRFHKRFDSVLSIANNYNPA------PPSPVA 79

Query: 2484 D--FRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRTR-----IPPQVDGE 2326
            +  F+S GTPS+PS+ SIPG+ SKYS+   ++    HPAF+   RTR      P +  G+
Sbjct: 80   EKTFKSTGTPSTPSSPSIPGKKSKYSRNFHNNPRQIHPAFKPLVRTRKIPVETPDETAGK 139

Query: 2325 SGIT--VGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAP 2152
            S I   V ENG+ Y    APF +QYSYTETPKVKP  LRE                 R P
Sbjct: 140  SDIDIKVDENGVCYEFPEAPFVYQYSYTETPKVKPRKLREPLVSPFGPESMQRPWTGRKP 199

Query: 2151 LPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVK 1972
            LPPSKKKLPEFDSF LPPP KKGVK +Q+PGPF+AGSGPKY   SREE+LGEPLTKEE+ 
Sbjct: 200  LPPSKKKLPEFDSFQLPPPHKKGVKPVQAPGPFLAGSGPKY-VKSREEVLGEPLTKEEMM 258

Query: 1971 DLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEK 1792
            +LI  C KT RQ+N+GRDGLTHNML+NIHAHWKR+RVCKI+C GV TVDMDNV ++LEEK
Sbjct: 259  ELINSCKKTTRQMNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMDNVCEKLEEK 318

Query: 1791 TGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQM 1612
            TGGKIIY KGGVI+LFRGRNYNY TRPRFPLMLW+PVTPVYPRLV+RVPEGLTLEEAT+M
Sbjct: 319  TGGKIIYHKGGVIYLFRGRNYNYMTRPRFPLMLWRPVTPVYPRLVRRVPEGLTLEEATEM 378

Query: 1611 RKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVP 1432
            RK+GR L+PICKL KNGVY  LV  VREAFEACELV INCQG+NPSDY+KIGAKLKDLVP
Sbjct: 379  RKKGRNLIPICKLAKNGVYCDLVKNVREAFEACELVCINCQGLNPSDYRKIGAKLKDLVP 438

Query: 1431 CVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMFDVS 1252
            CVL+SFE EHIL+W G+DW S+LPE  DN     E               SF  ++   +
Sbjct: 439  CVLISFEQEHILIWRGRDWVSSLPEDGDN----PEIREGSESVNAANTNRSFEVQVVAST 494

Query: 1251 AXXXXXXXXXXXXXTKAEDLDAH---LEVVETAYVSKSQDTDDDLSRETASSSDEITNMT 1081
            A                 +L A+   L   +  YV K    +D        SS++++  T
Sbjct: 495  A----GSSSLPVTEVNTYNLSANTFPLGDEDAEYVRKDGTKEDRSEDHYPESSNKVSVTT 550

Query: 1080 SGFSNHQDPSTTYLDTSSSG---SGCHAELCEDENQDEDSADIVGSARHDGD---DASTR 919
            +G S  + P     DT  +    S C       ++   D      SA  D +   D+S+ 
Sbjct: 551  TGISKSEIPLVYAGDTGDNSRILSDCRECKTRSDDSVVDKESEFESASDDVENKFDSSSL 610

Query: 918  LDTTGVNV-GMEMEEN-NC--LPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVY 751
            +  TG  V  + ++ N NC  +    P  +G+  L +QA++ GSA++L +D+S +A+IVY
Sbjct: 611  VPLTGYKVHSLTVDTNQNCQLVSSITPCTEGILLLWKQAIESGSAVVL-NDSSIDADIVY 669

Query: 750  QSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIE----EVEMVAN-------SN 604
            Q AV  + + PPGP+F+H+ KK + Q   +E+   IG +E    +++  A+       S+
Sbjct: 670  QRAVALSTSVPPGPVFQHQPKKVSVQRRGEEE---IGDLEVGCTKLDTPASSRKETVVSS 726

Query: 603  RKREGXXXXXXXXRDKLPEILLDVVPHGSLGVDELAKLLS 484
            RK           +  + +  L+VVP GSLGVDELAKLL+
Sbjct: 727  RKVNSTTSTRKEKKKGIRKDYLNVVPKGSLGVDELAKLLA 766


>ref|XP_004287455.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Fragaria
            vesca subsp. vesca]
          Length = 804

 Score =  650 bits (1677), Expect = 0.0
 Identities = 388/801 (48%), Positives = 487/801 (60%), Gaps = 74/801 (9%)
 Frame = -1

Query: 2664 EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXGLDFPHSSPA 2485
            EVRF+RWNNANAE F +RRR Q+EIED+ RR RR  SA+RI           D    +  
Sbjct: 32   EVRFARWNNANAEKFNQRRRAQQEIEDDFRRERRFDSATRIATVSVAGSSTSD----AET 87

Query: 2484 DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYR-------TRIPPQVDGE 2326
             F+S GTPSSPS  SIPG+ SKYS+ P +   + HPAFRR  +       TR  P+VD +
Sbjct: 88   AFKSIGTPSSPSRPSIPGKKSKYSENP-NPNPSSHPAFRRVIKPTKLSSITREKPEVDRK 146

Query: 2325 SGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAPLP 2146
            + I++G++G++Y I GAPFEF+YSYTETPK KP+ LRE P+              RAPLP
Sbjct: 147  ANISIGDDGLSYVIDGAPFEFKYSYTETPKQKPIKLREPPYAPFGPTTMGRPWTGRAPLP 206

Query: 2145 PSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDL 1966
             SKKK+ EFDSF LPPP KKGV+ +QSPGP++ GSGPKY   SREEILG+PLT +EVKDL
Sbjct: 207  ASKKKMKEFDSFQLPPPHKKGVRPVQSPGPYLPGSGPKY-VKSREEILGDPLTDQEVKDL 265

Query: 1965 IKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTG 1786
            + GC+KTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI+C GV TVDM+NV QQLEE+TG
Sbjct: 266  VNGCIKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMENVCQQLEERTG 325

Query: 1785 GKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRK 1606
            GKIIY +GGVIFLFRGRNYNY+TRPRFPLMLW+P+TPVYPRL+QR PEGLT+EEAT+MRK
Sbjct: 326  GKIIYRRGGVIFLFRGRNYNYKTRPRFPLMLWRPITPVYPRLIQRAPEGLTVEEATEMRK 385

Query: 1605 RGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCV 1426
            +GR L+PI KLGKNGVY+ LV  VREAFE CELVRI+CQGMN SDY+KIGAKLKDLVPCV
Sbjct: 386  KGRDLIPIRKLGKNGVYSDLVDNVREAFEECELVRIDCQGMNGSDYRKIGAKLKDLVPCV 445

Query: 1425 LLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMFDVSAX 1246
            L+SFE E ILMW G++WKS+L   E N     E               + S E  D S  
Sbjct: 446  LISFERESILMWRGREWKSSLVNPESNLKEVKE------SNVDDSPSIALSLEGEDASTV 499

Query: 1245 XXXXXXXXXXXXTKAEDLDAHLEVVET------AYVSKSQDTDD-------------DLS 1123
                              DA+ E+++T      A V  ++ T+D             D  
Sbjct: 500  CAFTGSVK----------DANPEMIDTSISSSIAEVVGAEGTEDPSPSPYIEPPAIIDTV 549

Query: 1122 RETASSSDEIT--------------NMTSGFSNHQDPSTTYLD----TSSSGSGCHAELC 997
             +  S+ + +T              NM +  S      T+Y D    T SS SG    L 
Sbjct: 550  SDVGSTCETVTISDIKGFRDDEAELNMKAYSSLVIPEDTSYADDESETISSTSGTEDILD 609

Query: 996  EDENQDEDSADI---VGSARHDGDDASTRLDTTGVNVGMEMEENNCLPEQ---------- 856
               + DE S       G+     ++  T+L+T      ME   +N  P+           
Sbjct: 610  NTRHADEASPTTSVGTGAILVTVENTETKLNTL-----MESPGSNKTPQDASVASQNLNE 664

Query: 855  -----KPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRT 691
                     + V  LL +AV  GSALIL DD+S +A+I+YQ AV+ AK+APPGP+F+HR+
Sbjct: 665  RAKLCAACKEKVLSLLNEAVGSGSALIL-DDSSLDADIIYQRAVDLAKSAPPGPVFKHRS 723

Query: 690  KKATEQAAE----QEKHQGIGQIEEVEMVANSNRKREGXXXXXXXXRDKL--------PE 547
             + + Q  +    +++ Q   ++E  E+     ++  G          K+         E
Sbjct: 724  SRGSAQMRKKLVVRKQKQEATELEVKEITVYDMQRNLGEKKRSERKDSKVHRTRTRDFGE 783

Query: 546  ILLDVVPHGSLGVDELAKLLS 484
             L  +VP GSL VDELAKLL+
Sbjct: 784  PLDSIVPQGSLRVDELAKLLA 804


>ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
            gi|223524018|gb|EEF27274.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 748

 Score =  648 bits (1672), Expect = 0.0
 Identities = 369/747 (49%), Positives = 459/747 (61%), Gaps = 20/747 (2%)
 Frame = -1

Query: 2664 EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXGLDFPHSSPA 2485
            ++ FSRWNNANA  F  RRR QKEIE++IRRNRR  SA+ I           +F      
Sbjct: 33   DIHFSRWNNANAREFNDRRRAQKEIEEDIRRNRRFNSAANIIDNYDSATSNENFKS---- 88

Query: 2484 DFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRTRIPP----QVDGESGI 2317
              +S GTPSSPSA SIPGR SKYSKP  +S  + HPAFR   +    P     +D  + +
Sbjct: 89   --KSIGTPSSPSAPSIPGRKSKYSKP--ESPTSHHPAFRSISKITKKPLPEKPIDRNADV 144

Query: 2316 TVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAPLPPSK 2137
             + E+G+++ + GAPFEF+YSYTETPK KP+ LREAPF              RAPLPPSK
Sbjct: 145  KLSEDGLSFVVDGAPFEFKYSYTETPKAKPIKLREAPFSPFGPTTMGRPWTGRAPLPPSK 204

Query: 2136 KKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKG 1957
            KKL EFDSF LPPP KKGVK +Q PGPF+ G+GP+Y   SREEILGEPLT EEVK LI+G
Sbjct: 205  KKLREFDSFKLPPPDKKGVKPVQKPGPFLPGAGPRY-VYSREEILGEPLTTEEVKILIEG 263

Query: 1956 CMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKI 1777
            C+KTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI+C+GV TVDMDNV QQLEE+TGGK+
Sbjct: 264  CLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDMDNVCQQLEERTGGKV 323

Query: 1776 IYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGR 1597
            IY KGGV++LFRGRNYNYRTRPRFPLMLWKPVTPVYPRL++R PEGLTLEEA++MR++GR
Sbjct: 324  IYRKGGVVYLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLIKRAPEGLTLEEASEMRRKGR 383

Query: 1596 QLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLS 1417
            +L+PICKL KNGVY  LV +VREAFE CELVRI+CQG+N SDY+K+GAKLK+LVPC+L+S
Sbjct: 384  KLIPICKLAKNGVYCNLVKEVREAFEECELVRIDCQGVNGSDYRKVGAKLKELVPCLLIS 443

Query: 1416 FEHEHILMWGGKDWKSTL--------PEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMF 1261
            FEHEHILMW G+DWKS++          I  + N AT                       
Sbjct: 444  FEHEHILMWRGRDWKSSMIKPVNDSVEAIGSDVNSATSIASVLEDQIMEIVSHEDGLSKP 503

Query: 1260 DVSAXXXXXXXXXXXXXTKAEDLDAHLEVVETAYVSKSQDTDDDLSRETASSSDEITNMT 1081
            D+S              +  +     +    T       +   +    +A S  E+ N  
Sbjct: 504  DMSTIPVGSMDEQAEHPSILDGTSVAIGASSTTVEMSEINPMTESGSSSAVSESEVINNA 563

Query: 1080 SGFS---NHQDPSTTYLDTSSSGSGCHAELCEDENQDEDSADIVGSARHDGDDASTRLDT 910
             G     N+ DP+       S  S             E   + VGS +   D        
Sbjct: 564  VGSESVVNNMDPANEMPVAMSVSS-------------ETVLESVGSKKELHD-------- 602

Query: 909  TGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFA 730
              V++    + N        + D V  L +QAV+ GSALIL  DA  +A+IVYQ AV FA
Sbjct: 603  --VSIECSDDVNKPANLSVSYADRVLLLWKQAVESGSALIL-VDADLDADIVYQRAVAFA 659

Query: 729  KTAPPGPIFRHRTKKATEQAAEQEKHQG-----IGQIEEVEMVANSNRKREGXXXXXXXX 565
            K+APPGP+FRHR+KKA+ + +E+++ +         +E +E   +     E         
Sbjct: 660  KSAPPGPVFRHRSKKASIRKSEKQESKDSEPKEFLNLEYLETNVSQTMGSENKSSKPQRK 719

Query: 564  RDKLPEILLDVVPHGSLGVDELAKLLS 484
            +    +  L+    G LGVDELAKLL+
Sbjct: 720  KKSREQQNLNSARLGRLGVDELAKLLA 746


>ref|XP_006338151.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Solanum
            tuberosum]
          Length = 764

 Score =  644 bits (1662), Expect = 0.0
 Identities = 376/761 (49%), Positives = 467/761 (61%), Gaps = 34/761 (4%)
 Frame = -1

Query: 2664 EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXGLDFPHSSPA 2485
            E+RFSRWNNANAE F+R  R QKEIEDEIR ++R  S   I             P S   
Sbjct: 26   EIRFSRWNNANAEKFIRHERTQKEIEDEIRFHKRFDSVLNIANNYNPA------PPSPVT 79

Query: 2484 D--FRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRTR-IPPQVDGESG-- 2320
            +  F+S GTPS+PS+ SIPG+ SKYS+   ++    HPAF+   RTR IP +   E+   
Sbjct: 80   EKTFKSVGTPSTPSSPSIPGKKSKYSRNFQNNPRQIHPAFKPLVRTRKIPDETADETARK 139

Query: 2319 ----ITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAP 2152
                I V ENG+ Y    APF +QYSYTETPK+KP  LRE                 R P
Sbjct: 140  SAIDIKVDENGVCYEFPEAPFVYQYSYTETPKLKPKKLREPLVSPFGPESMQRPWTGRKP 199

Query: 2151 LPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVK 1972
            LPPSKKK PEFDSF LPPP KKGVK +Q+PGPF+AGSGPKY   SREE+LGEPLTKEE+ 
Sbjct: 200  LPPSKKKRPEFDSFQLPPPHKKGVKPVQAPGPFLAGSGPKY-VKSREEVLGEPLTKEEMM 258

Query: 1971 DLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEK 1792
            +LI  C KT RQ+N+GRDGLTHNML+NIHAHWKR+RVCKI+C GV TVDMDNV ++LEEK
Sbjct: 259  ELINSCKKTTRQMNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMDNVCEKLEEK 318

Query: 1791 TGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQM 1612
            TGGKIIY KGG+I+LFRGRNYNY+TRPRFPLMLW+PVTPVYPRLVQRVPEGLTLEEAT M
Sbjct: 319  TGGKIIYHKGGLIYLFRGRNYNYKTRPRFPLMLWRPVTPVYPRLVQRVPEGLTLEEATLM 378

Query: 1611 RKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVP 1432
            RK+GR L+PICKL KNGVY  LV  VREAFEACELV INCQG+NPSDY+KIGAKLKDLVP
Sbjct: 379  RKKGRNLIPICKLAKNGVYCDLVKNVREAFEACELVSINCQGLNPSDYRKIGAKLKDLVP 438

Query: 1431 CVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMFDVS 1252
            CVL+SFE EHILMW G+DW S+LP  ED  N + +               +       ++
Sbjct: 439  CVLISFEQEHILMWRGRDWVSSLP--EDRDNDSDKAANTNRSLEVQVVASTSGSPRLPIT 496

Query: 1251 AXXXXXXXXXXXXXTKAEDLDAHLEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSGF 1072
                           + E      E V      + +  D  L     +  D  +  T+G 
Sbjct: 497  EMNTCNLSANTFPLGEEES-----EYVRRDGTKEDRSEDHYLESSNKAPLDVCSVTTTGI 551

Query: 1071 SNHQDPSTTYLDTSSSG---SGCHA-------ELCEDENQDEDSADIVGSARHDGDDAST 922
            S  + P     DT  +    S C          + + EN+ E ++D V     +  D+S+
Sbjct: 552  SESEIPLVYAGDTGDNSRILSDCRECKTRLDDSVVDTENELESASDDV----ENKFDSSS 607

Query: 921  RLDTTGVNV-GMEMEEN-NC--LPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIV 754
             +  TG  V  + ++ N NC  +    P  +G+  L +QA++ GSA++L DD+S +A+IV
Sbjct: 608  LVPLTGYKVHSLTVDTNQNCQLVSSITPCTEGILLLWKQAIESGSAVLL-DDSSIDADIV 666

Query: 753  YQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIE-----------EVEMVANS 607
            YQ AV  + +AP GP+F+H+ KK + Q   +E+   IG +E             +  A S
Sbjct: 667  YQRAVALSTSAPAGPVFQHQPKKVSVQRRGEEE---IGDLEVGCTKLDTPASSRKETAVS 723

Query: 606  NRKREGXXXXXXXXRDKLPEILLDVVPHGSLGVDELAKLLS 484
             RK              + E  L+VVP GSLGVDELAKLL+
Sbjct: 724  GRKVNSTTSTRKEKLKGIREDYLNVVPKGSLGVDELAKLLA 764


>ref|XP_006389456.1| hypothetical protein POPTR_0024s00430g [Populus trichocarpa]
            gi|550312256|gb|ERP48370.1| hypothetical protein
            POPTR_0024s00430g [Populus trichocarpa]
          Length = 731

 Score =  643 bits (1659), Expect = 0.0
 Identities = 379/769 (49%), Positives = 478/769 (62%), Gaps = 19/769 (2%)
 Frame = -1

Query: 2733 FASPFPLFXXXXXXXXXXXXXXSEVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQS 2554
            F +PFP+F               EV FSRW NANA+ F +R R Q+EIE++I R RR  S
Sbjct: 6    FPTPFPIFAPPSPNPSHRPST--EVHFSRWFNANADKFNQRYRSQQEIEEDISRRRRFTS 63

Query: 2553 ASRIXXXXXXXXXGLDFPHSSPAD---FRSRGTPSSPSARSIPGRASKYSKPPVDSKEAR 2383
            A+ I           D  +++  D   F+S GTPSSPS+ SIPG+ SKYSKP     +  
Sbjct: 64   ANNIVTNY-------DPKNAAEVDISFFKSTGTPSSPSSPSIPGKKSKYSKP----LKKT 112

Query: 2382 HPAFRRTYRTRIP-------PQVDGESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPL 2224
            HPAF     TR+P       P +D ++ I + E+G++Y I GAPFEF+YSYTETPKVKPL
Sbjct: 113  HPAFLPKI-TRVPLPRNNAKPPIDRKADIKLSEDGVSYVIDGAPFEFKYSYTETPKVKPL 171

Query: 2223 GLREAPFLXXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAG 2044
             LREAP+              RAPLPPSKKKL EFDSF LPPP KKGVK +Q+PGPF+ G
Sbjct: 172  KLREAPYAPFGPITMPRPWTGRAPLPPSKKKLREFDSFVLPPPDKKGVKPVQAPGPFLPG 231

Query: 2043 SGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRR 1864
            +GP+Y A +REEILG+PLT+EE+++L+ GC+K +RQLNMGRDGLTHNMLDNIHAHWKRRR
Sbjct: 232  AGPRY-AKTREEILGDPLTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRR 290

Query: 1863 VCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKP 1684
            VCKI+C GV TVDMDNV QQLEE+TGGKIIY KGGV++LFRGRNYNYR RPRFPLMLWKP
Sbjct: 291  VCKIKCKGVCTVDMDNVCQQLEERTGGKIIYRKGGVLYLFRGRNYNYRFRPRFPLMLWKP 350

Query: 1683 VTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELV 1504
            VTPVYPRL+QR PEGLTL+EA+ MR +GR+L+PICKLGKNGVY  LV  VREAFE CELV
Sbjct: 351  VTPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFEECELV 410

Query: 1503 RINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEX 1324
            RINCQGMN SD++KIGAKL+DLVPCVL+SFE EHILMW G+DWKS+  +  ++G+ A + 
Sbjct: 411  RINCQGMNGSDFRKIGAKLRDLVPCVLISFECEHILMWRGRDWKSSFTKPVNDGDEA-KN 469

Query: 1323 XXXXXXXXXXXXXXSFSKEMFDV-SAXXXXXXXXXXXXXTKAEDLDAHLEVVETAYVSKS 1147
                              E F V  A              + EDL               
Sbjct: 470  SSIDGATSATPLLEGLQNETFSVKDASTLNLKTSRMDAEDQGEDL-------------SQ 516

Query: 1146 QDTDDDLSRET-ASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHAELCEDENQDEDS 970
            +D D+  + +   S+S EI    +   N    + T  +     SG  +E+  D+    D 
Sbjct: 517  KDIDETFAAKIFISTSTEIYESKTTPDNDDSSAVTKSEAMRIASG--SEVILDDRGYIDE 574

Query: 969  ADIVGSARHDGDDASTRLDTTG-------VNVGMEMEENNCLPEQKPWLDGVTFLLRQAV 811
              I  S   D     T L+  G       V+ G  + E   L E   +  GV  LL+QAV
Sbjct: 575  MLITTSVESD-----TTLERIGNMEKLQNVSEGSHVSELAKLNES--YTQGVLELLKQAV 627

Query: 810  DDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIE 631
            + GSA++L  DA+ +A+ VYQ AV FA++APPGP+FR + +    Q +E +++   G++E
Sbjct: 628  EIGSAVVL--DANLDADAVYQKAVAFAQSAPPGPVFRRQPRNTVVQKSEMQEN---GELE 682

Query: 630  EVEMVANSNRKREGXXXXXXXXRDKLPEILLDVVPHGSLGVDELAKLLS 484
              ++ + S              R    E  +D VP GSL VDELAKLL+
Sbjct: 683  VKQVTSFSKMGGGSERKSSKVRRKYFNEQYVDSVPQGSLRVDELAKLLA 731


>gb|EOY30694.1| RNA-binding CRS1 / YhbY domain-containing protein, putative
            [Theobroma cacao]
          Length = 767

 Score =  639 bits (1647), Expect = e-180
 Identities = 361/759 (47%), Positives = 475/759 (62%), Gaps = 32/759 (4%)
 Frame = -1

Query: 2664 EVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQSASRIXXXXXXXXXGLDFPHSSPA 2485
            E+RFSRWNNANAE F +R+R Q+EIED+IRR RR  SA++I          +D   +SP 
Sbjct: 33   EIRFSRWNNANAEKFNQRQRAQQEIEDDIRRYRRFDSATKIAIT-------IDPSSASPR 85

Query: 2484 D---FRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRTRIPPQ---VDGE- 2326
                ++S G+PSSPS  SIPG+ SKYSKPP       HPAFR+  +T  PP    +D + 
Sbjct: 86   PTETYKSLGSPSSPSNPSIPGKKSKYSKPP------NHPAFRKFSKTANPPPPTPLDKKP 139

Query: 2325 SGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAPLP 2146
            + +++G++GI++ I GAPFEF+YSYTETPKVKP+ LRE P+              RAPLP
Sbjct: 140  ANVSIGDDGISFVIDGAPFEFKYSYTETPKVKPIKLREPPYSPFGPSTMPRPWTGRAPLP 199

Query: 2145 PSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDL 1966
            PSKKK+ EFDSF LPPP KKGVK IQ PGP++ G+GP+Y   SREEILGEPL  EEVK+L
Sbjct: 200  PSKKKMKEFDSFVLPPPNKKGVKPIQKPGPYLPGTGPRY-VQSREEILGEPLNAEEVKEL 258

Query: 1965 IKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTG 1786
            + GC+K++RQLNMGRDGLTHNMLDNIHAHWKRRRVCKI+C GV TVDMDNV +QLEE+TG
Sbjct: 259  VNGCLKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVCEQLEERTG 318

Query: 1785 GKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRK 1606
            GK+IY +GGV+FLFRGRNYNY+TRPRFPLMLWKPVTP+YPRL+Q+ PEGLT+EE ++MRK
Sbjct: 319  GKVIYRRGGVLFLFRGRNYNYKTRPRFPLMLWKPVTPMYPRLIQKAPEGLTVEEMSEMRK 378

Query: 1605 RGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCV 1426
            +GR+L+PICKL KNGVY+ LV  VREAFE CELVR+NC+G+  SDY+KIGAKLK+LVPCV
Sbjct: 379  KGRKLMPICKLAKNGVYSDLVKNVREAFEECELVRVNCEGIKGSDYRKIGAKLKELVPCV 438

Query: 1425 LLSFEHEHILMWGGKDWKSTL--------PEIEDNGNGAT--------EXXXXXXXXXXX 1294
            L+SFE+E ILMW G++WKS+          E  D  N  +        E           
Sbjct: 439  LISFENESILMWRGRNWKSSFLKPAFNSGVEERDAENATSILGQLEGQELSPVCVQAGYT 498

Query: 1293 XXXXSFSKEMF----DVSAXXXXXXXXXXXXXTKAEDLDAHLEVVETAYVSKSQDTDDDL 1126
                  S+E+     + S               K E +++ L+ ++ A      + + + 
Sbjct: 499  DQPLMISQEISIEQRESSVEKDRPNAVLDAKPAKMETIESTLDRIDYA------NDESES 552

Query: 1125 SRETASSSDEITNMTSGFSNHQDPSTTY-----LDTSSSGSGCHAELCEDENQDEDSADI 961
             R T+  +    ++    S  +  S TY     LD     +     L  + +    S++ 
Sbjct: 553  KRNTSGGATFFGDIKCASSESETMSKTYSPEPILDNPGIENEEPVALPLESDVMPRSSEN 612

Query: 960  VGSARHDGDDASTRLDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDD 781
              S        S  LD          + N    +  P  + V   ++QAV+ GSA++L D
Sbjct: 613  TLSQSESSVMDSLNLDQLEDVAQASQDINGPARKTAPCTERVLLFMKQAVESGSAVVL-D 671

Query: 780  DASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIEEVEMVANSNR 601
            DA+ +A+I+Y+ AV FA++APPGP+FRH+ +K    A ++   Q    +E  E+ A  N+
Sbjct: 672  DATLDADIIYERAVAFARSAPPGPVFRHQPRKV---AVQKNGKQEPANLEVKELKAVPNK 728

Query: 600  KREGXXXXXXXXRDKLPEILLDVVPHGSLGVDELAKLLS 484
                           + E  LD+VP GSLGVDELAKLL+
Sbjct: 729  GGNEKQASKTQRIKYIDERHLDIVPRGSLGVDELAKLLA 767


>ref|XP_002332503.1| predicted protein [Populus trichocarpa]
          Length = 699

 Score =  636 bits (1640), Expect = e-179
 Identities = 371/764 (48%), Positives = 477/764 (62%), Gaps = 14/764 (1%)
 Frame = -1

Query: 2733 FASPFPLFXXXXXXXXXXXXXXSEVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRHQS 2554
            F +PFP+F               EV FSRW NANA+ F +R R Q+EIE++I R RR  S
Sbjct: 6    FPTPFPIFAPPSPNPSHRPST--EVHFSRWFNANADKFNQRYRSQQEIEEDISRRRRFTS 63

Query: 2553 ASRIXXXXXXXXXGLDFPHSSPAD---FRSRGTPSSPSARSIPGRASKYSKPPVDSKEAR 2383
            A+ I           D  +++  D   F+S GTPSSPS+ SIPG+ SKYSKP     +  
Sbjct: 64   ANNIVTNY-------DPKNAAEVDISFFKSTGTPSSPSSPSIPGKKSKYSKP----LKKT 112

Query: 2382 HPAFRRTYRTRIP-------PQVDGESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPL 2224
            HPAF     TR+P       P +D ++ I + E+G++Y I GAPFEF+YSYTETPKVKPL
Sbjct: 113  HPAFLPKI-TRVPLPRNNAKPPIDRKADIKLSEDGVSYVIDGAPFEFKYSYTETPKVKPL 171

Query: 2223 GLREAPFLXXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAG 2044
             LREAP+              RAPLPPSKKKL EFDSF LPPP KKGVK +Q+PGPF+ G
Sbjct: 172  KLREAPYAPFGPITMPRPWTGRAPLPPSKKKLREFDSFVLPPPDKKGVKPVQAPGPFLPG 231

Query: 2043 SGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRR 1864
            +GP+Y A +REEILG+PLT+EE+++L+ GC+K +RQLNMGRDGLTHNMLDNIHAHWKRRR
Sbjct: 232  AGPRY-AKTREEILGDPLTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRR 290

Query: 1863 VCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKP 1684
            VCKI+C GV TVDMDNV QQLEE+TGGKIIY KGGV++LFRGRNYNYR RPRFPLMLWKP
Sbjct: 291  VCKIKCKGVCTVDMDNVCQQLEERTGGKIIYRKGGVLYLFRGRNYNYRFRPRFPLMLWKP 350

Query: 1683 VTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELV 1504
            VTPVYPRL+QR PEGLTL+EA+ MR +GR+L+PICKLGKNGVY  LV  VREAFE CELV
Sbjct: 351  VTPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFEECELV 410

Query: 1503 RINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEX 1324
            RINCQGMN SD++KIGAKL+DLVPCVL+SFE EHILMW G+DWKS+  +  ++G+ A + 
Sbjct: 411  RINCQGMNGSDFRKIGAKLRDLVPCVLISFECEHILMWRGRDWKSSFTKPVNDGDEA-KN 469

Query: 1323 XXXXXXXXXXXXXXSFSKEMFDVSAXXXXXXXXXXXXXTKAEDLDAHLEVVETAYVSKSQ 1144
                              E F V                     DA    ++T+ +  ++
Sbjct: 470  SSIDGATSATPLLEGLQNETFSVK--------------------DASTLNLKTSRMD-AE 508

Query: 1143 DTDDDLSR----ETASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHAELCEDENQDE 976
            D  +DLS+    ET ++   I+  T  + +   P                      + D+
Sbjct: 509  DQGEDLSQKDIDETFAAKIFISTSTEIYESKTTP----------------------DNDD 546

Query: 975  DSADIVGSARHDGDDASTRLDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSA 796
             SA     A      +  +  + G +V  E+ + N     + +  GV  LL+QAV+ GSA
Sbjct: 547  SSAVTKSEAMRIASGSELQNVSEGSHVS-ELAKLN-----ESYTQGVLELLKQAVEIGSA 600

Query: 795  LILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIEEVEMV 616
            ++L  DA+ +A+ VYQ AV FA++APPGP+FR + +    Q +E +++   G++E  ++ 
Sbjct: 601  VVL--DANLDADAVYQKAVAFAQSAPPGPVFRRQPRNTVVQKSEMQEN---GELEVKQVT 655

Query: 615  ANSNRKREGXXXXXXXXRDKLPEILLDVVPHGSLGVDELAKLLS 484
            + S              R    E  +D VP GSL VDELAKLL+
Sbjct: 656  SFSKMGGGSERKSSKVRRKYFNEQYVDSVPQGSLRVDELAKLLA 699


>ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
            lyrata] gi|297331845|gb|EFH62264.1| hypothetical protein
            ARALYDRAFT_480467 [Arabidopsis lyrata subsp. lyrata]
          Length = 700

 Score =  598 bits (1543), Expect = e-168
 Identities = 357/782 (45%), Positives = 468/782 (59%), Gaps = 30/782 (3%)
 Frame = -1

Query: 2739 LKFASPFPLFXXXXXXXXXXXXXXSEVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRH 2560
            LK  +PFP+F               E+RFSRW NANAE F +RRR Q+E+E EIRR+RR 
Sbjct: 3    LKLNTPFPIFAPSLFPNHNPRAPS-EIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRF 61

Query: 2559 QSASRIXXXXXXXXXGLDFPHSSPADFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARH 2380
             +A++I           + P +SP  FRSRGTPS PSARSIPGR SKYSKP     + ++
Sbjct: 62   DAATKIVHTHDSEAAASE-PKTSP--FRSRGTPSLPSARSIPGRRSKYSKPDSGPNKPKN 118

Query: 2379 PAFRRTYRTRIP---PQVDGESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREA 2209
                   + R+P   PQ+D +  + + E+G++Y I GAPFEF+YSYTETPKVKPL LRE 
Sbjct: 119  -------KPRVPDSPPQLDAKPEVKLSEDGLSYVINGAPFEFKYSYTETPKVKPLKLREP 171

Query: 2208 PFLXXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKY 2029
             +              RAPLP S+K   EFDSF LPP GKKGVK +Q PGPF  G GP+Y
Sbjct: 172  AYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPDGKKGVKPVQKPGPFRPGLGPRY 231

Query: 2028 HATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIR 1849
              T +EEILGEPLTKEE+++L+  C+KT RQLNMGRDGLTHNML+NIH  WKRRRVCKI+
Sbjct: 232  VYT-KEEILGEPLTKEEIRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIK 290

Query: 1848 CLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVY 1669
            C GV TVDMD V +QLEEK GGK+IY +GGV+FLFRGRNYN+RTRPRFPLMLWKPV PVY
Sbjct: 291  CKGVCTVDMDKVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVY 350

Query: 1668 PRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQ 1489
            PRL+Q+VPEGLTL+EAT+MR++GR+L+PICKLGKNGVY  LV  V+EAFE CELVRI+CQ
Sbjct: 351  PRLIQQVPEGLTLQEATEMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQ 410

Query: 1488 GMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKS--TLPEIEDNGNGATEXXXX 1315
            GM  SD++KIGAKLKDLVPCVL+SFE+E IL+W G++WKS  T+P+ +D+          
Sbjct: 411  GMKGSDFRKIGAKLKDLVPCVLISFENEQILIWRGREWKSSLTIPDKKDD---------- 460

Query: 1314 XXXXXXXXXXXSFSKEMFDVSAXXXXXXXXXXXXXTKAEDLDAHLEVVETAYVSKSQDTD 1135
                           E  +V A                ED +A +   +T  V+++   D
Sbjct: 461  -------------ILEDIEVDAAL-------------PEDDEASVSPNQTQTVTQNPPLD 494

Query: 1134 ------DDLSRETASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHAELCEDENQDED 973
                  D    + + S+ + + M    ++ Q PST  L   ++ S    +  E E++ E 
Sbjct: 495  SMELQNDPGGHDLSPSTVDFSAMEDTSNSLQSPSTKDLTEPTADSSIQ-DHEEPEHEPET 553

Query: 972  SADIVGSARHDGDDASTRLDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSAL 793
            S +I                                   K  ++ V  L++QAV+ G+AL
Sbjct: 554  SEEI----------------------------------SKQSIERVLNLMKQAVESGTAL 579

Query: 792  ILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIE----EV 625
            +L D A  +A+ V+  AV F+  A PGP+F+H  +K      ++ +  G   +E     V
Sbjct: 580  VL-DAADLDADTVFSKAVTFSTVASPGPVFQHGLRKQPTVKKQESREFGYRNLEAKSSNV 638

Query: 624  EMVANSNR--------KRE----GXXXXXXXXRDKLPEILLD---VVPHGSLGVDELAKL 490
             +  N+++        KRE    G        + K+ E   D   V+PHG+L +DELAKL
Sbjct: 639  VVSRNASKSSNVVVSGKREVAVSGEREEKEGLKKKMDEFAEDYREVIPHGTLKLDELAKL 698

Query: 489  LS 484
            L+
Sbjct: 699  LA 700


>ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
            gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName:
            Full=CRS2-associated factor 1, chloroplastic; AltName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS2-associated factor 1; Flags: Precursor
            gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis
            thaliana] gi|20197570|gb|AAD24394.2| expressed protein
            [Arabidopsis thaliana] gi|28393847|gb|AAO42331.1| unknown
            protein [Arabidopsis thaliana]
            gi|330251862|gb|AEC06956.1| CRS2-associated factor 1
            [Arabidopsis thaliana]
          Length = 701

 Score =  583 bits (1503), Expect = e-163
 Identities = 349/772 (45%), Positives = 450/772 (58%), Gaps = 20/772 (2%)
 Frame = -1

Query: 2739 LKFASPFPLFXXXXXXXXXXXXXXSEVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRH 2560
            LK  +PFP+F               E+RFSRW NANAE F +RRR Q+E+E EIRR+RR 
Sbjct: 3    LKLNTPFPIFAPSLFPNHNPRAPS-EIRFSRWGNANAERFEQRRRSQEELEAEIRRDRRF 61

Query: 2559 QSASRIXXXXXXXXXGLDFPHSSPADFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARH 2380
             +A++I           + P +SP  FRSRGTPS PSARSIPGR SKYSKP  DS   R 
Sbjct: 62   DAATKIVHTHDSEAAAAE-PKTSP--FRSRGTPSLPSARSIPGRRSKYSKP--DSGPNRP 116

Query: 2379 PAFRRTYRTRIPPQVDGESGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFL 2200
                R   +  PPQ+D +  + + E+G+ Y I GAPFEF+YSYTETPKVKPL LRE  + 
Sbjct: 117  KNKPRVPDS--PPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTETPKVKPLKLREPAYA 174

Query: 2199 XXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHAT 2020
                         RAPLP S+K   EFDSF LPP GKKG+K +Q PGPF  G GP+Y   
Sbjct: 175  PFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKPGPFRPGVGPRY-VY 233

Query: 2019 SREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLG 1840
            S+EEILGEPLTKEEV++L+  C+KT RQLNMGRDGLTHNML+NIH  WKRRRVCKI+C G
Sbjct: 234  SKEEILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKG 293

Query: 1839 VSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRL 1660
            V TVDMDNV +QLEEK GGK+IY +GGV+FLFRGRNYN+RTRPRFPLMLWKPV PVYPRL
Sbjct: 294  VCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRL 353

Query: 1659 VQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMN 1480
            +Q+VPEGLT +EAT MR++GR+L+PICKLGKNGVY  LV  V+EAFE CELVRI+CQGM 
Sbjct: 354  IQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMK 413

Query: 1479 PSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXX 1300
             SD++KIGAKLKDLVPCVL+SFE+E IL+W G++WKS+L   +  G+             
Sbjct: 414  GSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGD------------- 460

Query: 1299 XXXXXXSFSKEMFDVSAXXXXXXXXXXXXXTKAEDLDAHLEVVETAYVSKSQDTDDDLSR 1120
                                             ED++    + E    S S +    +++
Sbjct: 461  -------------------------------ILEDIEVDTALPEDDEPSVSPNQSQTMTQ 489

Query: 1119 ETASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHAELCEDENQDEDSADIVGSARHD 940
                 S E+ N   G     D S + +D+S      ++   +  +  + +   V S   D
Sbjct: 490  NPPLDSMELQNDPDG----HDLSPSTVDSSEMEGTINS--LQSWSTKDVTEPTVDSFLRD 543

Query: 939  GDDASTRLDTTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNAN 760
             ++     +T+       +E    L +Q   ++  T L+  A D      LD D      
Sbjct: 544  LEEPEDEPETSEEISKQSIERVLILMKQA--VESGTALVLDAAD------LDADT----- 590

Query: 759  IVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQIE----EVEMVANSNR--- 601
             V+  AV F+  A PGP+F+H  +K      ++ +  G G +E     V +  N+++   
Sbjct: 591  -VFSKAVAFSSVASPGPVFQHGLRKQPTVKKQESQEFGYGDLEAKSSNVVVSRNASKSSN 649

Query: 600  -------------KREGXXXXXXXXRDKLPEILLDVVPHGSLGVDELAKLLS 484
                         +RE          D+  E   +V+PHG+L VDELAKLL+
Sbjct: 650  VVVFGKREVAERGEREEKEEGSKKKMDEFAEDYREVMPHGTLKVDELAKLLA 701


>ref|XP_006494323.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Citrus
            sinensis]
          Length = 837

 Score =  580 bits (1496), Expect = e-163
 Identities = 296/483 (61%), Positives = 354/483 (73%), Gaps = 12/483 (2%)
 Frame = -1

Query: 2739 LKFASPFPLFXXXXXXXXXXXXXXS------EVRFSRWNNANAEPFVRRRRQQKEIEDEI 2578
            LK   PFP+F                     E+RFSRWNNANAE F +RRR Q+EIED+I
Sbjct: 3    LKLIIPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIEDDI 62

Query: 2577 RRNRRHQSASRIXXXXXXXXXGLDFPHSSPADFRSRGTPSSPSARSIPGRASKYSKPPVD 2398
            RR+RR  SA++I               ++   F+S GTPSSPS  SIPGR SKYSKP  +
Sbjct: 63   RRHRRFDSATKITQSYDSSTSTA----TNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATN 118

Query: 2397 SKEARHPAFRRTYR----TRIPPQ--VDGESGITVGENGIAYRIGGAPFEFQYSYTETPK 2236
            S    HPAFR+  +    T   P+     +S I++ E+G++Y I GAPFEF+YSYTE PK
Sbjct: 119  SS-VDHPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPK 177

Query: 2235 VKPLGLREAPFLXXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGP 2056
             KPL LREA F              RAPLPPSKKKL EFDSF LPPP KKGVK +Q PGP
Sbjct: 178  AKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGP 237

Query: 2055 FVAGSGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHW 1876
            ++ G+GP+Y +T REEILGEPLT EEV++L++   ++ RQLNMGRDGLTHNMLDNIHAHW
Sbjct: 238  YLPGTGPRYVST-REEILGEPLTAEEVRELVESVKRSSRQLNMGRDGLTHNMLDNIHAHW 296

Query: 1875 KRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLM 1696
            KRRR CKI+C GV TVDMDNV +QLEE+TGGKIIY +GGV++LFRGRNYNYR RP FPLM
Sbjct: 297  KRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRNRPHFPLM 356

Query: 1695 LWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEA 1516
            LWKP+TPVYPRL+Q+VP+GLTLEEAT+MRK+GR+L+PICKLGKNGVY  L   VREAFE 
Sbjct: 357  LWKPITPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 416

Query: 1515 CELVRINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNG 1336
            CELVRINCQGMN SDY+KIGAKL+DLVPCVL+SFE EHILMW G++WKS++ +  ++   
Sbjct: 417  CELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSED 476

Query: 1335 ATE 1327
            A E
Sbjct: 477  AKE 479



 Score = 86.7 bits (213), Expect = 5e-14
 Identities = 76/251 (30%), Positives = 116/251 (46%), Gaps = 18/251 (7%)
 Frame = -1

Query: 1182 LEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSGFSNHQDPSTT-----YLDTSSSGS 1018
            +E+ ET   +   +   D  +    +  ++ N   G    +  S T      LD   S  
Sbjct: 598  MEINETISATGCSNDKSDAMKNIFENVSKLENSGVGNDTSEPVSDTNECQTVLDNKGSVL 657

Query: 1017 GCHAELC---------EDENQDEDSADIVGSARHDGDDASTRLDTTGVNVGMEMEENNCL 865
            G  A L           +  +D+     VGS  HD     + +           E++N L
Sbjct: 658  GESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVP----------EDHNVL 707

Query: 864  PE-QKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTK 688
                 P L+ V  L+RQAV++GSA++LDD A+ +A+ +Y+ +V FAK+APPGP+F+ R++
Sbjct: 708  TRLHGPSLEIVLHLMRQAVENGSAVVLDD-ATLDADSIYERSVAFAKSAPPGPVFQQRSR 766

Query: 687  KATEQAAEQEKHQGIGQIEEV-EMVANSNRKREGXXXXXXXXRDKLPEILLDVV--PHGS 517
            K   Q  E+++   +    EV  MV + NR                 E  LDVV  P GS
Sbjct: 767  KIAIQKGEKKEAGHLKMKREVPNMVVSENRGNVRQSNRKKTKNSDEIEHGLDVVLSPQGS 826

Query: 516  LGVDELAKLLS 484
            L +DELAKLL+
Sbjct: 827  LKIDELAKLLA 837


>ref|XP_006451251.1| hypothetical protein CICLE_v100106541mg, partial [Citrus clementina]
            gi|557554477|gb|ESR64491.1| hypothetical protein
            CICLE_v100106541mg, partial [Citrus clementina]
          Length = 825

 Score =  580 bits (1496), Expect = e-163
 Identities = 296/483 (61%), Positives = 354/483 (73%), Gaps = 12/483 (2%)
 Frame = -1

Query: 2739 LKFASPFPLFXXXXXXXXXXXXXXS------EVRFSRWNNANAEPFVRRRRQQKEIEDEI 2578
            LK   PFP+F                     E+RFSRWNNANAE F +RRR Q+EIED+I
Sbjct: 9    LKLIIPFPIFSPPPNHNPNLNPNPPNHRPATEIRFSRWNNANAEEFNQRRRAQQEIEDDI 68

Query: 2577 RRNRRHQSASRIXXXXXXXXXGLDFPHSSPADFRSRGTPSSPSARSIPGRASKYSKPPVD 2398
            RR+RR  SA++I               ++   F+S GTPSSPS  SIPGR SKYSKP  +
Sbjct: 69   RRHRRFDSATKITQSYDSSTSTA----TNGVAFKSAGTPSSPSRPSIPGRKSKYSKPATN 124

Query: 2397 SKEARHPAFRRTYR----TRIPPQ--VDGESGITVGENGIAYRIGGAPFEFQYSYTETPK 2236
            S    HPAFR+  +    T   P+     +S I++ E+G++Y I GAPFEF+YSYTE PK
Sbjct: 125  SS-VDHPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPK 183

Query: 2235 VKPLGLREAPFLXXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGP 2056
             KPL LREA F              RAPLPPSKKKL EFDSF LPPP KKGVK +Q PGP
Sbjct: 184  AKPLKLREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGP 243

Query: 2055 FVAGSGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHW 1876
            ++ G+GP+Y +T REEILGEPLT EEV++L++   ++ RQLNMGRDGLTHNMLDNIHAHW
Sbjct: 244  YLPGTGPRYVST-REEILGEPLTAEEVRELVESVKRSSRQLNMGRDGLTHNMLDNIHAHW 302

Query: 1875 KRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLM 1696
            KRRR CKI+C GV TVDMDNV +QLEE+TGGKIIY +GGV++LFRGRNYNYR RP FPLM
Sbjct: 303  KRRRACKIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRNRPHFPLM 362

Query: 1695 LWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEA 1516
            LWKP+TPVYPRL+Q+VP+GLTLEEAT+MRK+GR+L+PICKLGKNGVY  L   VREAFE 
Sbjct: 363  LWKPITPVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEV 422

Query: 1515 CELVRINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNG 1336
            CELVRINCQGMN SDY+KIGAKL+DLVPCVL+SFE EHILMW G++WKS++ +  ++   
Sbjct: 423  CELVRINCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSED 482

Query: 1335 ATE 1327
            A E
Sbjct: 483  AKE 485



 Score = 72.8 bits (177), Expect = 8e-10
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 16/210 (7%)
 Frame = -1

Query: 1182 LEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSGFSNHQDPSTT-----YLDTSSSGS 1018
            +E+ ET   +   +   D  +    +  ++ N   G    +  S T      LD   S  
Sbjct: 604  MEINETISATGCSNDKSDAMKNIFENVSKLENSGVGNDTSEPVSDTNECQTVLDNKGSVL 663

Query: 1017 GCHAELC---------EDENQDEDSADIVGSARHDGDDASTRLDTTGVNVGMEMEENNCL 865
            G  A L           +  +D+     VGS  HD     + +           E++N L
Sbjct: 664  GESAALSVGSETTLGSAESTRDQSEHFYVGSLNHDYQQNPSEVP----------EDHNVL 713

Query: 864  PE-QKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTK 688
                 P L+ V  L+RQAV++GSA++LDD A+ +A+ +Y+ +V FAK+APPGP+F+ R++
Sbjct: 714  TRLHGPSLEIVLHLMRQAVENGSAVVLDD-ATLDADSIYERSVAFAKSAPPGPVFQQRSR 772

Query: 687  KATEQAAEQEKHQGIGQIEEV-EMVANSNR 601
            K   Q  E+++   +    EV  MV + NR
Sbjct: 773  KIAIQKGEKKEAGHLKMKREVPNMVVSENR 802


>ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max]
          Length = 723

 Score =  579 bits (1493), Expect = e-162
 Identities = 351/786 (44%), Positives = 445/786 (56%), Gaps = 34/786 (4%)
 Frame = -1

Query: 2739 LKFASPFPLFXXXXXXXXXXXXXXSEVRFSRWNNANAEPFVRRRRQQKEIEDEIRRNRRH 2560
            LK    FP+F              SE+RFSRWNN                          
Sbjct: 3    LKLPHTFPIFAPSLDPNPNPPRQSSELRFSRWNN-------------------------- 36

Query: 2559 QSASRIXXXXXXXXXGLDFPHSSPADFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARH 2380
                               P +   + R    P+ P+ RS        ++P VD +   H
Sbjct: 37   -------------------PETRSPNARRTPRPTGPAKRS-----KSPARPKVDRQS--H 70

Query: 2379 PAFRRTYRTRIPPQ-VDGE-SGITVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAP 2206
            PAFR +   +  PQ V G    + + ++G++Y I GAPFEF+YSYTETPKVKP+ +REAP
Sbjct: 71   PAFRFSNIPKSKPQRVSGAPENVKISDDGLSYVIDGAPFEFKYSYTETPKVKPIKMREAP 130

Query: 2205 FLXXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYH 2026
            F+             RAPLP SKKKL EFDSF LPPP KKGVK +QSPGP++AG+GP+Y 
Sbjct: 131  FVPFGPDTMPRPWTGRAPLPASKKKLKEFDSFVLPPPHKKGVKPVQSPGPYLAGTGPRY- 189

Query: 2025 ATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRC 1846
              SREEILGEPLT+EE++DL+K CMK +RQLN+GRDGLTHNMLDNIHAHWKRRR CKIRC
Sbjct: 190  VKSREEILGEPLTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRACKIRC 249

Query: 1845 LGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYP 1666
             GV TVDMDNV  QLEE+TGGKII+ KGGV++LFRGRNYNY+TRP FPLMLWKPV PVYP
Sbjct: 250  KGVCTVDMDNVCHQLEERTGGKIIHRKGGVLYLFRGRNYNYKTRPHFPLMLWKPVPPVYP 309

Query: 1665 RLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQG 1486
            RLVQRVPEGLTLEEAT+MR++G  L+PICKLGKNGVY  LV  VREAFE CELVRINCQG
Sbjct: 310  RLVQRVPEGLTLEEATKMRQKGSTLIPICKLGKNGVYCDLVKTVREAFEECELVRINCQG 369

Query: 1485 MNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWKSTLPEIEDNGNGATE-XXXXXX 1309
            +N SDY+KIGAKL+DLVPC LLSFE+EHILMW G +WKS++P+  D+   + +       
Sbjct: 370  LNKSDYRKIGAKLRDLVPCTLLSFEYEHILMWRGPNWKSSIPDRGDDRKESKQIEVDHKN 429

Query: 1308 XXXXXXXXXSFSKEMFDVSAXXXXXXXXXXXXXTKAEDLDAHLEVVETAYVSKSQ----- 1144
                      FS     ++              +     D  L+ VE +Y +++      
Sbjct: 430  YKPLPSEALEFSAPSLQMNPLEHESNLLHDTSISSISS-DVTLDKVEVSYPNENSHQSMS 488

Query: 1143 --------------DTDDDLSRETASSSDEITNMTSGFSNHQDPSTTYLDTSSSGSGCHA 1006
                          +T +D +   A      + + S    H D    +   + S S    
Sbjct: 489  GVTEVPSLTKIYDVETTNDSTDSYAEPEPRTSLIPSMTIPHYDSHAEFSSKAMSESHGTE 548

Query: 1005 ELCEDEN-QDEDSADIVGS-ARHDGDDASTR----------LDTTGVNVGMEMEENNCLP 862
             + + ++  D  SA I GS A   G D ST           LD  G     E + +    
Sbjct: 549  HIMDSKSCSDGLSASISGSHATLGGSDNSTNGMVDSHSNKLLDALG-----EEDVSQAPR 603

Query: 861  EQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKA 682
               P +  +  LL QAV+ GSAL+LD D S +A+ +YQ+ V FAK+APPGP FR  TK  
Sbjct: 604  SAAPSMKAIWLLLEQAVEKGSALVLDKD-SLDADNIYQNTVAFAKSAPPGPAFRKNTKAV 662

Query: 681  TEQAAEQEKHQGIGQIEEVEMVANSNRKREGXXXXXXXXRDKLPEILLDVVPHGSLGVDE 502
            +++  +QE     G   E +     + KR+         +    + LL+VVP G+LGVDE
Sbjct: 663  SQKNPKQE-----GSTLETKETTIDSMKRKKENSTKIPRKANFDDQLLNVVPQGTLGVDE 717

Query: 501  LAKLLS 484
            LAKLL+
Sbjct: 718  LAKLLT 723


>gb|ESW32299.1| hypothetical protein PHAVU_002G310400g [Phaseolus vulgaris]
          Length = 726

 Score =  573 bits (1477), Expect = e-160
 Identities = 329/710 (46%), Positives = 422/710 (59%), Gaps = 42/710 (5%)
 Frame = -1

Query: 2490 PADFRSRGTPSSPSARSIPGRASKYSKPPVDSKEARHPAFRRTYRTRIPPQ--VDGESGI 2317
            P + R    PS P+ RS         +P VD +   HPA R +   +  P+        +
Sbjct: 45   PPNARRTNRPSGPAKRS-----KSPQRPNVDPQS--HPALRFSNIPKSKPRRITSAPDNV 97

Query: 2316 TVGENGIAYRIGGAPFEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAPLPPSK 2137
             + ++G++Y I GAPFEF+YSYTETPK KP+ +REAPFL             RAPLPPSK
Sbjct: 98   KISDDGLSYVIDGAPFEFKYSYTETPKAKPIKIREAPFLPFGPATMPRPWTGRAPLPPSK 157

Query: 2136 KKLPEFDSFHLPPPGKKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKG 1957
            KKL EFDSF LPPP KKGVK +QSPGP++ G+GP+Y   SREEILGEPLTKEE+++L+  
Sbjct: 158  KKLKEFDSFELPPPHKKGVKPVQSPGPYLRGTGPRY-VKSREEILGEPLTKEEIRELVNS 216

Query: 1956 CMKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKI 1777
            CMKT+RQLNMGRDG THNMLDNIHAHWKRRRVCKIRCLGV TVDMDNV QQLEEKTGGK+
Sbjct: 217  CMKTQRQLNMGRDGFTHNMLDNIHAHWKRRRVCKIRCLGVCTVDMDNVCQQLEEKTGGKV 276

Query: 1776 IYSKGGVIFLFRGRNYNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGR 1597
            I+ +GG ++LFRGRNYN++TRPRFPLMLWKPV+PVYP L+ RVP+GLTLEE T+MR++GR
Sbjct: 277  IFRRGGKVYLFRGRNYNHKTRPRFPLMLWKPVSPVYPSLIPRVPKGLTLEEVTKMREKGR 336

Query: 1596 QLLPICKLGKNGVYNRLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLS 1417
             L+PIC+LGKNGVY  LV  VREAFE C+LVRINCQG+N SDY+KIGAKL+DLVPC L+S
Sbjct: 337  TLIPICQLGKNGVYYYLVNTVREAFEECDLVRINCQGLNKSDYRKIGAKLRDLVPCTLIS 396

Query: 1416 FEHEHILMWGGKDWKSTLPEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMFDVSAXXXX 1237
            F++EHILMW G +WKS++P++ D+   A +                 S E  ++SA    
Sbjct: 397  FQYEHILMWRGPNWKSSIPDLGDDLKEANKIVDDKHFETR-------SSEALEISAPGLQ 449

Query: 1236 XXXXXXXXXTKAE------DLDAHLEVVETAYVSKSQDTDDDLSRETASSSDEITNMTSG 1075
                        +         A L+ VE  Y +++       SR++ S   E+T++T  
Sbjct: 450  KNPVEHASNFSHDASISSCSSAATLDKVEVPYPNEN-------SRQSVSEVTELTSLTKV 502

Query: 1074 FS-----------------NHQDPSTTYLDTSSSGSGCHAELCEDENQDEDSADIVG--- 955
            +                      PS T+ + SS  S   +    D +  ED  D      
Sbjct: 503  YEVETANVATDSCAQPDPCTSPSPSMTFYNNSSEDS---SRAMSDNHGAEDIMDSQTCCG 559

Query: 954  --SARHDGDDASTRLDTTGVNVGMEMEENNCLP------------EQKPWLDGVTFLLRQ 817
              SA   G DA+       +N  ++   +  L                P +  +  L  Q
Sbjct: 560  GLSASISGSDANVGGGDNYINGMVDPHSDELLDALGEADVSQLPRSAAPCMKEILLLFEQ 619

Query: 816  AVDDGSALILDDDASSNANIVYQSAVEFAKTAPPGPIFRHRTKKATEQAAEQEKHQGIGQ 637
            AV+ GSAL+LD D S +A+ +YQ  V FAK+A PGPIF    K      A Q+ H+  G 
Sbjct: 620  AVEKGSALVLDKD-SLDADNIYQKTVAFAKSASPGPIFGKHRKSPD---AVQKSHKKEGS 675

Query: 636  IEEVEMVANSNRKREGXXXXXXXXRDKLPEILLDVVPHGSLGVDELAKLL 487
              E +     + KRE         +    + LL+VVP G+LGVDELAKLL
Sbjct: 676  TLETKETTTVSTKREKAKSTKISRKANFDDQLLNVVPQGTLGVDELAKLL 725


>gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
          Length = 701

 Score =  570 bits (1468), Expect = e-159
 Identities = 323/685 (47%), Positives = 418/685 (61%), Gaps = 34/685 (4%)
 Frame = -1

Query: 2436 PGRASKYSKPPVDSKEARHPAFRRTYRTR-----IPPQVDGESGITVGENGIAYRIGGAP 2272
            P   +K  + P  S    HPAF    R R     IP   +  +G+ V E G+AY + GAP
Sbjct: 36   PAAVAKRRRAPAPS----HPAFSSVIRGRPKKVPIPENGEPAAGVRVTERGLAYHLDGAP 91

Query: 2271 FEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPG 2092
            FEFQYSYTETP+ +P+ LREAPFL             R PLP S+K+LPEFDSF LPPPG
Sbjct: 92   FEFQYSYTETPRARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPPPG 151

Query: 2091 KKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGL 1912
            KKGVK +QSPGPF+AG+ P+Y A SREE+LGEPLTKEEV +L+K  +KT+RQLN+GRDGL
Sbjct: 152  KKGVKPVQSPGPFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGL 211

Query: 1911 THNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRN 1732
            THNML+NIH+HWKR+RVCKI+C GV TVDMDNV QQLEEK GGK+I+ +GGVIFLFRGRN
Sbjct: 212  THNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRN 271

Query: 1731 YNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYN 1552
            YNYRTRP +PLMLWKP  PVYPRLV+++P+GLT +EA  MRKRGRQL PICKLGKNGVY 
Sbjct: 272  YNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYL 331

Query: 1551 RLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWK 1372
             LV QVREAFEAC+LVR++C G+N SD +KIGAKLKDLVPC LLSFE EHILMW G DWK
Sbjct: 332  NLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWK 391

Query: 1371 STLPEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMFDVSAXXXXXXXXXXXXXTK---- 1204
            S+LP +E+N                       SKE    SA              K    
Sbjct: 392  SSLPPLEENDFKVASDQILN------------SKEAGSGSALTPIELVNNATSLKKCNLI 439

Query: 1203 --AEDLDAHLE-------VVETAYVSKSQDTDDDLSRETASSSDEITNMTSGFSNHQDPS 1051
              AE L+  ++       ++ +A  +      + +    +S+   I    S  +   DPS
Sbjct: 440  EGAEKLEDSMKSSFENGMILGSACANPGVCNSEGIDGTESSADAPIEFSPSNSARDLDPS 499

Query: 1050 TT--------YLDTSSSGS--GCHAELCEDENQDEDSAD----IVGSARHDGDDASTRLD 913
             T         LD S +G     + + C +  Q  D  +    ++GS+    +  + R +
Sbjct: 500  QTSTLYCQSSLLDKSENGELIEMYPDRCGNSEQSPDVPEALTCLMGSSDEIHELETMRRN 559

Query: 912  TTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEF 733
               +N    +  ++ +P    +++G+  L +QA+D G AL+L+++  ++AN VYQ +V F
Sbjct: 560  CKHLNGSDGVNSDSIVPS---YMEGILLLFKQAIDSGMALVLNENEFADANYVYQKSVAF 616

Query: 732  AKTAPPGPIFRHRTKKA-TEQAAEQEKHQGIGQIEEVEMVANSNRKRE-GXXXXXXXXRD 559
             KTAP   + RH  +K+   Q  E  K+  I +  E   V++  +K+E           D
Sbjct: 617  TKTAPRYLVLRHTPRKSHGTQKTEPAKNVRINKHLEEHKVSDHVKKKEIVMGGSRMQRND 676

Query: 558  KLPEILLDVVPHGSLGVDELAKLLS 484
               E L DVVP G+L VDELAKLL+
Sbjct: 677  HAREFLSDVVPQGTLRVDELAKLLA 701


>ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
            gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName:
            Full=CRS2-associated factor 1, chloroplastic; AltName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS2-associated factor 1; Flags: Precursor
            gi|55297418|dbj|BAD69270.1| putative CRS2-associated
            factor 1 [Oryza sativa Japonica Group]
            gi|55297612|dbj|BAD68987.1| putative CRS2-associated
            factor 1 [Oryza sativa Japonica Group]
            gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa
            Japonica Group] gi|215694476|dbj|BAG89423.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|222618506|gb|EEE54638.1| hypothetical protein
            OsJ_01906 [Oryza sativa Japonica Group]
          Length = 701

 Score =  568 bits (1465), Expect = e-159
 Identities = 323/685 (47%), Positives = 418/685 (61%), Gaps = 34/685 (4%)
 Frame = -1

Query: 2436 PGRASKYSKPPVDSKEARHPAFRRTYRTR-----IPPQVDGESGITVGENGIAYRIGGAP 2272
            P   +K  + P  S    HPAF    R R     IP   +  +G+ V E G+AY + GAP
Sbjct: 36   PAAVAKRRRAPAPS----HPAFSSVIRGRPKKVPIPENGEPAAGVRVTERGLAYHLDGAP 91

Query: 2271 FEFQYSYTETPKVKPLGLREAPFLXXXXXXXXXXXXXRAPLPPSKKKLPEFDSFHLPPPG 2092
            FEFQYSYTETP+ +P+ LREAPFL             R PLP S+K+LPEFDSF LPPPG
Sbjct: 92   FEFQYSYTETPRARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPPPG 151

Query: 2091 KKGVKSIQSPGPFVAGSGPKYHATSREEILGEPLTKEEVKDLIKGCMKTRRQLNMGRDGL 1912
            KKGVK +QSPGPF+AG+ P+Y A SREE+LGEPLTKEEV +L+K  +KT+RQLN+GRDGL
Sbjct: 152  KKGVKPVQSPGPFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGL 211

Query: 1911 THNMLDNIHAHWKRRRVCKIRCLGVSTVDMDNVRQQLEEKTGGKIIYSKGGVIFLFRGRN 1732
            THNML+NIH+HWKR+RVCKI+C GV TVDMDNV QQLEEK GGK+I+ +GGVIFLFRGRN
Sbjct: 212  THNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRN 271

Query: 1731 YNYRTRPRFPLMLWKPVTPVYPRLVQRVPEGLTLEEATQMRKRGRQLLPICKLGKNGVYN 1552
            YNYRTRP +PLMLWKP  PVYPRLV+++P+GLT +EA  MRKRGRQL PICKLGKNGVY 
Sbjct: 272  YNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYL 331

Query: 1551 RLVYQVREAFEACELVRINCQGMNPSDYKKIGAKLKDLVPCVLLSFEHEHILMWGGKDWK 1372
             LV QVREAFEAC+LVR++C G+N SD +KIGAKLKDLVPC LLSFE EHILMW G DWK
Sbjct: 332  NLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWK 391

Query: 1371 STLPEIEDNGNGATEXXXXXXXXXXXXXXXSFSKEMFDVSAXXXXXXXXXXXXXTK---- 1204
            S+LP +E+N                       SKE    SA              K    
Sbjct: 392  SSLPPLEENDFKVASDQILN------------SKEAGSGSALTPIELVNNATSLKKCNLI 439

Query: 1203 --AEDLDAHLE-------VVETAYVSKSQDTDDDLSRETASSSDEITNMTSGFSNHQDPS 1051
              AE L+  ++       ++ +A  +      + +    +S+   I    S  +   DPS
Sbjct: 440  EGAEKLEDSMKSSFENGMILGSACGNPGVCNSEGIDGTESSADAPIEFSPSNSARDLDPS 499

Query: 1050 TT--------YLDTSSSGS--GCHAELCEDENQDEDSAD----IVGSARHDGDDASTRLD 913
             T         LD S +G     + + C +  Q  D  +    ++GS+    +  + R +
Sbjct: 500  QTSTLYCQSSLLDKSENGELIEMYPDRCGNSEQSPDVPEALTCLMGSSDEIHELETMRRN 559

Query: 912  TTGVNVGMEMEENNCLPEQKPWLDGVTFLLRQAVDDGSALILDDDASSNANIVYQSAVEF 733
               +N    +  ++ +P    +++G+  L +QA+D G AL+L+++  ++AN VYQ +V F
Sbjct: 560  CKHLNGSDGVNSDSIVPS---YMEGILLLFKQAIDSGMALVLNENEFADANYVYQKSVAF 616

Query: 732  AKTAPPGPIFRHRTKKA-TEQAAEQEKHQGIGQIEEVEMVANSNRKRE-GXXXXXXXXRD 559
             KTAP   + RH  +K+   Q  E  K+  I +  E   V++  +K+E           D
Sbjct: 617  TKTAPRYLVLRHTPRKSHGTQKTEPAKNVRINKHLEEHKVSDHVKKKEIVMGGSRMQRND 676

Query: 558  KLPEILLDVVPHGSLGVDELAKLLS 484
               E L DVVP G+L VDELAKLL+
Sbjct: 677  HAREFLSDVVPQGTLRVDELAKLLA 701