BLASTX nr result

ID: Zingiber25_contig00008498 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00008498
         (1524 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chl...   402   e-109
ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [S...   400   e-109
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g...   399   e-108
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...   399   e-108
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   399   e-108
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   394   e-107
ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chlor...   394   e-107
gb|ACG41877.1| RNA binding protein [Zea mays]                         392   e-106
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   386   e-104
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   384   e-104
ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A...   384   e-104
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   382   e-103
gb|EMS58535.1| RNA pseudourine synthase 2, chloroplastic [Tritic...   382   e-103
gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [...   375   e-101
gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus...   373   e-100
gb|ESW08113.1| hypothetical protein PHAVU_009G019500g [Phaseolus...   373   e-100
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   372   e-100
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor...   370   e-100
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   367   6e-99
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   366   1e-98

>ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Setaria
            italica]
          Length = 437

 Score =  402 bits (1033), Expect = e-109
 Identities = 200/304 (65%), Positives = 233/304 (76%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            E EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN NGTLVNAILHHCR+ T  C+  N   
Sbjct: 130  EAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCRISTFTCLARNSTG 189

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                             +Q+T E +  E  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 190  DECPDSSDDDVDV-FDVDQFTTEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAKDEHSHA 248

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
             LAEQFK HTI RVYISLT G+P+P+SGRIE  IARD NNRIRM A++G +  R+AR+AA
Sbjct: 249  QLAEQFKLHTIRRVYISLTCGVPHPNSGRIEASIARDPNNRIRMIAIAG-SGQRYARHAA 307

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKV E FA GG+A+V+WRLETGRTHQIRAHAKYLGIPLLGDE YGGTKSMA       
Sbjct: 308  SRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPR 367

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSSH 624
                 H  L++++SK++RPCLHA  LGFKHPH+G+ L FSCPPP+DF+EVLD+LR V+S 
Sbjct: 368  TPSKYHSGLSDLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLDELRRVTSA 427

Query: 623  CSNN 612
               N
Sbjct: 428  DGQN 431


>ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
            gi|241917257|gb|EER90401.1| hypothetical protein
            SORBIDRAFT_10g030300 [Sorghum bicolor]
          Length = 441

 Score =  400 bits (1028), Expect = e-109
 Identities = 198/304 (65%), Positives = 232/304 (76%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            E EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T  C+ +  + 
Sbjct: 135  EAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCL-ARSST 193

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                             +Q+  E    E  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 194  GDECLDSSDDDIDVFNVDQFATEDASSEVRNALVRPGIVHRLDKGTSGLLVVAKDEHSHA 253

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
             LAEQFK HTI RVYISLT G+PNP+SGRIE  IARD NNRIRM A++G +  R+AR+AA
Sbjct: 254  QLAEQFKLHTIRRVYISLTCGVPNPNSGRIEASIARDPNNRIRMIAIAG-SGHRYARHAA 312

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKV E F  GG+A+V+WRLETGRTHQIRAHAKY+GIPLLGDE YGGTKSMA       
Sbjct: 313  SRYKVREVFVGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTKSMALSLLRPR 372

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSSH 624
                 H  L+N++SK++RPCLHA  LGFKHPH+G+ L FSCPPP+DFSEVLD+LR V+S 
Sbjct: 373  TPSKYHSDLSNLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFSEVLDELRKVTSS 432

Query: 623  CSNN 612
             + N
Sbjct: 433  DAQN 436


>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
            gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
            pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
            gi|53791796|dbj|BAD53590.1| ribosomal large subunit
            pseudouridine synthase-like [Oryza sativa Japonica Group]
            gi|54291043|dbj|BAD61720.1| ribosomal large subunit
            pseudouridine synthase-like [Oryza sativa Japonica Group]
            gi|113596634|dbj|BAF20508.1| Os06g0717400 [Oryza sativa
            Japonica Group] gi|215706335|dbj|BAG93191.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|222636236|gb|EEE66368.1| hypothetical protein
            OsJ_22675 [Oryza sativa Japonica Group]
          Length = 445

 Score =  399 bits (1025), Expect = e-108
 Identities = 199/304 (65%), Positives = 232/304 (76%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            EPEDIPLDIVYED+H+LVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T  C+  N + 
Sbjct: 134  EPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARN-SI 192

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                             +Q+T   +  E  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 193  DDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHA 252

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
             LAEQFK HTI RVYISLT G PNP+SGRIEVPIARD NNRIRM A  G +  R+AR+AA
Sbjct: 253  QLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG-SGHRYARHAA 311

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKV E FA GG+A+V+WRLETGRTHQIRAHAKYLGIPLLGDE YGGTKSMA       
Sbjct: 312  SRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPR 371

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSSH 624
                 H  L+N++SK++RPCLHA  LGFKHPH+G+ L FSCPPP+DF+EVL++L  V+  
Sbjct: 372  TPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELHQVTLA 431

Query: 623  CSNN 612
             + N
Sbjct: 432  SNGN 435


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score =  399 bits (1025), Expect = e-108
 Identities = 199/304 (65%), Positives = 232/304 (76%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            EPEDIPLDIVYED+H+LVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T  C+  N + 
Sbjct: 134  EPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARN-SI 192

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                             +Q+T   +  E  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 193  DDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHA 252

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
             LAEQFK HTI RVYISLT G PNP+SGRIEVPIARD NNRIRM A  G +  R+AR+AA
Sbjct: 253  QLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG-SGHRYARHAA 311

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKV E FA GG+A+V+WRLETGRTHQIRAHAKYLGIPLLGDE YGGTKSMA       
Sbjct: 312  SRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPR 371

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSSH 624
                 H  L+N++SK++RPCLHA  LGFKHPH+G+ L FSCPPP+DF+EVL++L  V+  
Sbjct: 372  TPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELHQVTLA 431

Query: 623  CSNN 612
             + N
Sbjct: 432  SNGN 435


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
            brachyantha]
          Length = 442

 Score =  399 bits (1024), Expect = e-108
 Identities = 198/304 (65%), Positives = 231/304 (75%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            EPEDIPLDIVYED+H+LVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T  C+  N   
Sbjct: 132  EPEDIPLDIVYEDQHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSTD 191

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                             +Q+T   +  E  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 192  DECPDSSDDDIDV-FHVDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHA 250

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
             LAEQFK HTI RVYISLT G PNP+SGRIEVPIARD NNRIRM A  G +  R+AR+AA
Sbjct: 251  QLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG-SGHRYARHAA 309

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKV E FA GG+A+V+W+LETGRTHQIRAHAKYLGIPLLGDE YGGTKSMA       
Sbjct: 310  SRYKVREVFAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPR 369

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSSH 624
                 H  L+N+++K++RPCLHA  LGFKHPH+G+ L FSCPPP+DF+EVL++LR V+  
Sbjct: 370  TSSRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELRRVTPS 429

Query: 623  CSNN 612
               N
Sbjct: 430  DGQN 433


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  394 bits (1012), Expect = e-107
 Identities = 194/301 (64%), Positives = 228/301 (75%), Gaps = 2/301 (0%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGN +GTLVN ILHHC LPT+A    +   
Sbjct: 137  EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVALPNRDSEE 196

Query: 1343 XXXXXXXXXXXXXDLCTEQYT--AEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHS 1170
                          +  +++   A G +   C+  IRPGIVHRLDKGTSGLLVVAKD+HS
Sbjct: 197  DD------------ISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHS 244

Query: 1169 HSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARY 990
            H+HL+EQFK H+IHRVYISLTSG+P P SGR+E+P+ RD NNRIRM AV G +NS  AR+
Sbjct: 245  HAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARH 304

Query: 989  AASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXX 810
            AASRYKVIE  A GG+A+V+WRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MA     
Sbjct: 305  AASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLR 364

Query: 809  XXXXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVS 630
                   HG L  ++S+L+RPCLHA +LGF HP TG+ + FSC PPEDF+E+L  LR +S
Sbjct: 365  PRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKIS 424

Query: 629  S 627
            +
Sbjct: 425  T 425


>ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like
            [Brachypodium distachyon]
          Length = 439

 Score =  394 bits (1011), Expect = e-107
 Identities = 194/298 (65%), Positives = 229/298 (76%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            E EDIPLDIVYEDEH+LVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T  C+  N + 
Sbjct: 130  EAEDIPLDIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARN-SI 188

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                             +Q+  E +  E  DA++RPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 189  DDECPESSDDDIDVFDVDQFNGE-VSSEVRDAIVRPGIVHRLDKGTSGLLVVAKDEHSHA 247

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
             LAEQFK HTI R+YISLT G+PNP+S RIEVPI+RD NNRIRM A  G +  R+AR+AA
Sbjct: 248  QLAEQFKLHTIRRIYISLTCGVPNPNSARIEVPISRDPNNRIRMIAAPG-SGHRYARHAA 306

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKV E F  GG+A+V+W+LETGRTHQIRAHAKYLG PLLGDE YGG+KSMA       
Sbjct: 307  SRYKVREVFCSGGSALVEWKLETGRTHQIRAHAKYLGYPLLGDETYGGSKSMALSLLRPR 366

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVS 630
                 HG L+N++SK++RPCLHA  LGFKHPH+G+ L FSCPPP+DF+EVLD+LR V+
Sbjct: 367  TPSRYHGDLSNLISKIDRPCLHAALLGFKHPHSGKMLEFSCPPPDDFAEVLDELRRVT 424


>gb|ACG41877.1| RNA binding protein [Zea mays]
          Length = 439

 Score =  392 bits (1007), Expect = e-106
 Identities = 198/304 (65%), Positives = 230/304 (75%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            E EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN  GTLVNAILHHC++ T  C+  + A 
Sbjct: 132  EAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLARSSAG 191

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                             +Q+ AE +  E  +AL+RPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 192  DECPDSSDEDTDV-FHVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAKDEHSHA 250

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
             LAEQFK HTI RVYISLT G PNP+SGRIE  IARD NNRIRM A++G +  R+AR AA
Sbjct: 251  RLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDPNNRIRMTAIAG-SGHRYARNAA 309

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKV E FA GG+A+V+WRLETGRTHQIRAHAKY+GIPLLGDE YGGT+SMA       
Sbjct: 310  SRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSMALSLLRPR 369

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSSH 624
                 H  L+N+LSK++RPCLHA SLGFKHP +G+ L FSCPPP+DF EVL +LR V+S 
Sbjct: 370  SPSKYHSGLSNLLSKVDRPCLHAASLGFKHPRSGKVLEFSCPPPDDFLEVLGELRRVTSS 429

Query: 623  CSNN 612
             + N
Sbjct: 430  DAPN 433


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
            sativus]
          Length = 453

 Score =  386 bits (992), Expect = e-104
 Identities = 188/299 (62%), Positives = 225/299 (75%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            EPEDI LDIVYEDEHVLVVNKPAHMVVHPAPGN  GTLVNAIL+HC LP +A        
Sbjct: 137  EPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENES 196

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                          +  +++++ G+     +A IRPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 197  DSD-----------VSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHA 245

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
            HL+ QFKQH+I RVYISLT G+P  ++GRIE+PI RD NNRIRM A+ G  N+ HA+YAA
Sbjct: 246  HLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHAKYAA 305

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRY V+E  A+GG+++V+WRLETGRTHQIRAHAKY+GIPLLGDEVYGGTKSMA       
Sbjct: 306  SRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTR 365

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSS 627
                 HG L  ++S LERPCLHA +LGF HPHTG+ +RFSCPPP DF+E+L QLR + +
Sbjct: 366  ASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREIGT 424


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
            chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  384 bits (986), Expect = e-104
 Identities = 189/299 (63%), Positives = 225/299 (75%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            EPEDI LDIVYEDEHVLVVNKPAHMVVHPAPGN  GTLVNAIL+HC LP +A        
Sbjct: 137  EPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENES 196

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                          +  +++++ G+     +A IRPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 197  DSD-----------VSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHA 245

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
            HL+ QFKQH+I RVYISLT G+P  ++GRIE+PI RD NNRIRM A+ G NN  HA+YAA
Sbjct: 246  HLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTNNP-HAKYAA 304

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRY V+E  A+GG+++V+WRLETGRTHQIRAHAKY+GIPLLGDEVYGGTKSMA       
Sbjct: 305  SRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTR 364

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSS 627
                 HG L  ++S LERPCLHA +LGF HPHTG+ +RFSCPPP DF+E+L QLR + +
Sbjct: 365  ASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREIGT 423


>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
            gi|548833830|gb|ERM96267.1| hypothetical protein
            AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  384 bits (985), Expect = e-104
 Identities = 195/306 (63%), Positives = 224/306 (73%), Gaps = 2/306 (0%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            EPED+PLDI+YED+HVLVVNKPAHMVVHPAPGN NGTLVN ILHHC LP           
Sbjct: 143  EPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCTLPAFGLPDGELTS 202

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGID--LENCDALIRPGIVHRLDKGTSGLLVVAKDDHS 1170
                           C    T    D     C + IRPGIVHRLDKGTSGLLVVAK++HS
Sbjct: 203  ESDDE----------CDNGLTMFNPDPISTQCRSSIRPGIVHRLDKGTSGLLVVAKNEHS 252

Query: 1169 HSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARY 990
            H+HL+EQFK HTIHR YISLT G+P+PS+G IE+PIARD NNRIRMAAVSG NN+R AR 
Sbjct: 253  HAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMAAVSGQNNTRKARL 312

Query: 989  AASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXX 810
            A SRY V+E  A GG+A+V+WRL+TGRTHQIR HAKY+G PLLGDEVYGGTKSMA     
Sbjct: 313  ATSRYHVMEVLAGGGSALVEWRLQTGRTHQIRVHAKYIGNPLLGDEVYGGTKSMALSRLR 372

Query: 809  XXXXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVS 630
                   HG L+ ++S L+RPCLHAFSLGFKHPH+ E + F+CPPP DF+EVL QL+S+ 
Sbjct: 373  PRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPPPPDFAEVLRQLQSIR 432

Query: 629  SHCSNN 612
            S  SNN
Sbjct: 433  S--SNN 436


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  382 bits (980), Expect = e-103
 Identities = 194/299 (64%), Positives = 225/299 (75%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            E EDIPLDIVYED++VLVVNKPAHMVVHPAPGN  GTLVN ILHHC LPT+A   SNQ  
Sbjct: 131  EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA--SSNQEA 188

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                          +  ++  +  I      A IRPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 189  FSDAED--------ISDDEEFSSSIS----GASIRPGIVHRLDKGTSGLLVVAKDEHSHA 236

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
            HL+EQFK HTI RVYISLTSG+P+ SSGRIEVPI+RD NNRIRMAA+ G N    AR+AA
Sbjct: 237  HLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAA 296

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKVIE  A GG+A+V+WRLETGRTHQIRAHAKY+GIPLLGDEVYGGTK+MA       
Sbjct: 297  SRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPR 356

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSS 627
                 HG +  ++S L+RPCLHA +LGF HPHT E ++FSCPPP DF+E+L QLR + +
Sbjct: 357  TAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLREIGT 415


>gb|EMS58535.1| RNA pseudourine synthase 2, chloroplastic [Triticum urartu]
          Length = 485

 Score =  382 bits (980), Expect = e-103
 Identities = 188/289 (65%), Positives = 220/289 (76%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            E EDIPLDIVYEDEH+LVVNKPAHMVVHPAPGN NGTLVNAILHHC++ T  C+ +    
Sbjct: 91   EAEDIPLDIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCL-ARSPI 149

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                             +Q+T   +  E  +A++RPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 150  YDECPESSDDDVDVFDVDQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHA 209

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
             LAEQFK HTI RVYISLT G+P+P+S RIEVPI+RD NNRIRM A  G +  R+A++AA
Sbjct: 210  QLAEQFKLHTISRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPG-SGHRYAKHAA 268

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKV E F  GG+A+V+WRLETGRTHQIRAHAKYLG PLLGDE YGGTKSMA       
Sbjct: 269  SRYKVREVFCAGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDETYGGTKSMALSLLRPR 328

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSE 657
                 HG LTN++SK++RPCLHA  LGFKHPH+G+ L FSCPPP+DF+E
Sbjct: 329  TPSKYHGDLTNLVSKIDRPCLHAALLGFKHPHSGKVLEFSCPPPDDFTE 377


>gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  375 bits (963), Expect = e-101
 Identities = 187/299 (62%), Positives = 219/299 (73%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            EPEDIPLDIVYED+HVLVVNKP HMVVHPAPGN  GTLVN ILHHC LPT+A    ++  
Sbjct: 140  EPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHCSLPTVAL---SEKE 196

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                           C     A         A +RPGIVHRLDKGTSGLLVVAKD+HSHS
Sbjct: 197  VLSDTEDVSDDDEGFCYGASAA---------ASVRPGIVHRLDKGTSGLLVVAKDEHSHS 247

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
            HL+EQFKQHTI RVYISLT G+P+PS+GR+++ I RDSNNR+RM AV GLN+   AR+AA
Sbjct: 248  HLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHAA 307

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKVIE  A GG+A++QWRLETGRTHQIRAHAKY+GIPLLGDEVYGGTKSMA       
Sbjct: 308  SRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPR 367

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSS 627
                 +  L+ ++S+LERP LHA  LGF+HPH+ E + FSC PP DF+E+L  LR + +
Sbjct: 368  TPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFSCQPPPDFAEILSDLRKIGT 426


>gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  373 bits (958), Expect = e-100
 Identities = 185/298 (62%), Positives = 217/298 (72%)
 Frame = -2

Query: 1520 PEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAXX 1341
            PE+IPLDIVYEDEHVLV+NKPAHMVVHPAPGN +GTLVN ILHHC LP +   K      
Sbjct: 142  PENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEGLSD 201

Query: 1340 XXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSH 1161
                         L +   + EG       + IRPGIVHRLDKGTSGLLVVAKD+HSH  
Sbjct: 202  TEDCDDEVNSYGSLAS---SCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMK 258

Query: 1160 LAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAAS 981
            L+EQFKQ TI RVY+SLT+G+P P SGR++VP+ RD NNR+RM AV+G  NSR AR+AAS
Sbjct: 259  LSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARHAAS 318

Query: 980  RYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXX 801
            RYKVIE  A G  ++V+W+LETGRTHQIRAHAKYLG+PLLGDEVYGGTKSM         
Sbjct: 319  RYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRS 378

Query: 800  XXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSS 627
               LHG +  ++S L+RPCLHA +LGF+HPHTGE + FSC PP DF E+L QLR + S
Sbjct: 379  PISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRRIGS 436


>gb|ESW08113.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 458

 Score =  373 bits (958), Expect = e-100
 Identities = 185/298 (62%), Positives = 217/298 (72%)
 Frame = -2

Query: 1520 PEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAXX 1341
            PE+IPLDIVYEDEHVLV+NKPAHMVVHPAPGN +GTLVN ILHHC LP +   K      
Sbjct: 153  PENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEGLSD 212

Query: 1340 XXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSH 1161
                         L +   + EG       + IRPGIVHRLDKGTSGLLVVAKD+HSH  
Sbjct: 213  TEDCDDEVNSYGSLAS---SCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMK 269

Query: 1160 LAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAAS 981
            L+EQFKQ TI RVY+SLT+G+P P SGR++VP+ RD NNR+RM AV+G  NSR AR+AAS
Sbjct: 270  LSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARHAAS 329

Query: 980  RYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXX 801
            RYKVIE  A G  ++V+W+LETGRTHQIRAHAKYLG+PLLGDEVYGGTKSM         
Sbjct: 330  RYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRS 389

Query: 800  XXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSS 627
               LHG +  ++S L+RPCLHA +LGF+HPHTGE + FSC PP DF E+L QLR + S
Sbjct: 390  PISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRRIGS 447


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
            PREDICTED: RNA pseudouridine synthase 2,
            chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  372 bits (955), Expect = e-100
 Identities = 183/300 (61%), Positives = 222/300 (74%), Gaps = 2/300 (0%)
 Frame = -2

Query: 1520 PEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAXX 1341
            P++IPLDIVYEDEHVLV+NKPAHMVVHPAPGN +GTLVN ILHHC LP +   K      
Sbjct: 143  PQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSD 202

Query: 1340 XXXXXXXXXXXXDLCTEQYTAEGID--LENCDALIRPGIVHRLDKGTSGLLVVAKDDHSH 1167
                         L +   + EG++  L      IRPGIVHRLDKGTSGLLVVAKD+HSH
Sbjct: 203  TEDSDDEFNSYISLAS---SCEGLNSRLSVASNSIRPGIVHRLDKGTSGLLVVAKDEHSH 259

Query: 1166 SHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYA 987
              L+EQFKQ TI R+Y+SLT+G+P P +GR+EVP+ RD+NNRIRM AV+G  NS+ ARYA
Sbjct: 260  MKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNRIRMTAVTGPVNSKKARYA 319

Query: 986  ASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXX 807
            ASRYKVIE  A G  ++V+W+LETGRTHQIRAHAKYLG+PLLGDE+YGGTKSM       
Sbjct: 320  ASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDELYGGTKSMVLSLLRP 379

Query: 806  XXXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSS 627
                 LH  +  ++S+L+RPCLHA++LGF+HPHTGE + FSC PP DF+E+L QLR + S
Sbjct: 380  RTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTGEQVHFSCEPPADFAEILSQLRRIGS 439


>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
            arietinum]
          Length = 438

 Score =  370 bits (950), Expect = e-100
 Identities = 182/296 (61%), Positives = 220/296 (74%)
 Frame = -2

Query: 1520 PEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAXX 1341
            PE+IPLDIVYEDEH+LV+NKPAHMVVHPAPGN +GTLVN ILHHC LP    V+ ++   
Sbjct: 143  PENIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPN---VEFSKDEA 199

Query: 1340 XXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHSH 1161
                           ++  + EG+D     A IRPGIVHRLDKGTSGLLVVAKD+HSH  
Sbjct: 200  LSDTEDSDDELNGFTSQAPSCEGLDSRLSIASIRPGIVHRLDKGTSGLLVVAKDEHSHMK 259

Query: 1160 LAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAAS 981
            L+EQFK  TI RVYISLT+G+P P +GR+EVP+ RD NNR+RM AV+G   S  AR+AAS
Sbjct: 260  LSEQFKLRTIKRVYISLTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGPLTSMKARHAAS 319

Query: 980  RYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXXX 801
            RYKVIE  A G  A+V+W+LETGRTHQIRAHA+YLG+PLLGDEVYGGTK+M         
Sbjct: 320  RYKVIEILAGGSCALVEWKLETGRTHQIRAHARYLGVPLLGDEVYGGTKNMVLSLLRPRT 379

Query: 800  XXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSV 633
               LHG +T ++S+L+RPCLHA +LGF+HPHTGE + FSC PP DF+E+L QLR +
Sbjct: 380  TPSLHGEMTKMVSELDRPCLHAMTLGFQHPHTGEQVHFSCEPPVDFNEILSQLRRI 435


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  367 bits (943), Expect = 6e-99
 Identities = 188/299 (62%), Positives = 219/299 (73%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            EPE+IPLDIVYEDE+VLVVNKPAHMVVHPAPGN  GTLVN ILHHC LPT+    S+Q  
Sbjct: 154  EPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTV----SSQEV 209

Query: 1343 XXXXXXXXXXXXXDLCTEQYTAEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHSHS 1164
                          LC+  Y A           +RPGIVHRLDKGTSGLLVVAKD+HSH+
Sbjct: 210  LSGAEDVSDDDDEGLCSSSYAAS----------VRPGIVHRLDKGTSGLLVVAKDEHSHA 259

Query: 1163 HLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARYAA 984
            HL+EQFK HTI RVY+SLT G+P P +GRI+VPI RD +NRIRMAA+   N  + AR+AA
Sbjct: 260  HLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVEPNRGQ-ARHAA 318

Query: 983  SRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXXXX 804
            SRYKVIE  A GG+A+V+WRLETGRTHQIRAHAKY+GIPLLGDEVYGGT++MA       
Sbjct: 319  SRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSR 378

Query: 803  XXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVSS 627
                 H  L+  LS LERPCLHA +LGF HP TG+ + FSCPPP DF+E+L QLR + +
Sbjct: 379  TQPSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFSCPPPPDFTEILSQLREMGT 437


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  366 bits (940), Expect = 1e-98
 Identities = 184/301 (61%), Positives = 218/301 (72%), Gaps = 2/301 (0%)
 Frame = -2

Query: 1523 EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNLNGTLVNAILHHCRLPTMACVKSNQAX 1344
            EPEDIPLDIVYEDEHV          VHPAPGN +GTLVN ILHHC LPT+A    +   
Sbjct: 293  EPEDIPLDIVYEDEHV----------VHPAPGNASGTLVNGILHHCSLPTVALPNRDSEE 342

Query: 1343 XXXXXXXXXXXXXDLCTEQYT--AEGIDLENCDALIRPGIVHRLDKGTSGLLVVAKDDHS 1170
                          +  +++   A G +   C+  IRPGIVHRLDKGTSGLLVVAKD+HS
Sbjct: 343  DD------------ILDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHS 390

Query: 1169 HSHLAEQFKQHTIHRVYISLTSGIPNPSSGRIEVPIARDSNNRIRMAAVSGLNNSRHARY 990
            H+HL+EQFK H+IHRVYISLTSG+P P SGR+E+P+ RD NNRIRM AV G +NS  AR+
Sbjct: 391  HAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARH 450

Query: 989  AASRYKVIEDFARGGAAMVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAXXXXX 810
            AASRYKVIE  A GG+A+V+WRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MA     
Sbjct: 451  AASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLR 510

Query: 809  XXXXXXLHGHLTNILSKLERPCLHAFSLGFKHPHTGEFLRFSCPPPEDFSEVLDQLRSVS 630
                   HG L  ++S+L+RPCLHA +LGF HP TG+ + FSC PPEDF+E+L  LR +S
Sbjct: 511  PRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKIS 570

Query: 629  S 627
            +
Sbjct: 571  T 571


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