BLASTX nr result

ID: Zingiber25_contig00006910 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00006910
         (250 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|2BMY|A Chain A, Banana Lectin gi|71042657|pdb|2BMY|B Chain B...    60   4e-07
gb|ADW77219.1| lectin [Musa acuminata AAA Group]                       59   5e-07
pdb|1X1V|A Chain A, Structure Of Banana Lectin- Methyl-Alpha-Man...    58   1e-06
gb|ABS86034.1| mannose-binding lectin [Musa acuminata AAA Group]       58   1e-06
gb|ABS86033.1| mannose-specific recombinant lectin [synthetic co...    57   2e-06

>pdb|2BMY|A Chain A, Banana Lectin gi|71042657|pdb|2BMY|B Chain B, Banana
           Lectin gi|71042658|pdb|2BMZ|A Chain A, Banana Lectin
           Bound To Xyl-b1,3 Man-a-o-methyl (xm)
           gi|71042659|pdb|2BMZ|B Chain B, Banana Lectin Bound To
           Xyl-b1,3 Man-a-o-methyl (xm) gi|71042660|pdb|2BN0|A
           Chain A, Banana Lectin Bound To Laminaribiose
           gi|71042661|pdb|2BN0|B Chain B, Banana Lectin Bound To
           Laminaribiose gi|6224973|gb|AAB82776.2|
           ripening-associated protein [Musa acuminata AAA Group]
          Length = 141

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 32/82 (39%), Positives = 42/82 (51%)
 Frame = -1

Query: 247 GGSGGQSHEFELIPGEYINSMVGSVKTYRGETRISKLEFKTNLXXXXXXXXXXXXKEFTV 68
           GGSGG  HE  L  GEY+  M G V  Y G   + KL F TN               F++
Sbjct: 56  GGSGGTPHEIVLQEGEYLVGMAGEVANYHGAVVLGKLGFSTN-KKAYGPFGNTGGTPFSL 114

Query: 67  PVVNGRIVGFFGQYTNYINAIG 2
           P+  G+I GFFG+   +++AIG
Sbjct: 115 PIAAGKISGFFGRGGKFLDAIG 136


>gb|ADW77219.1| lectin [Musa acuminata AAA Group]
          Length = 141

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 32/82 (39%), Positives = 42/82 (51%)
 Frame = -1

Query: 247 GGSGGQSHEFELIPGEYINSMVGSVKTYRGETRISKLEFKTNLXXXXXXXXXXXXKEFTV 68
           GGSGG  HE  L  GEY+  M G    Y G   + KL F TN               F++
Sbjct: 56  GGSGGTPHEIVLQEGEYLVGMTGEFANYHGVVVVGKLGFNTN-KKSYGPFGNTGGTPFSL 114

Query: 67  PVVNGRIVGFFGQYTNYINAIG 2
           P+V G+I GFFG+   +++AIG
Sbjct: 115 PIVAGKISGFFGRGGQFLDAIG 136


>pdb|1X1V|A Chain A, Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex
           gi|83753560|pdb|1X1V|B Chain B, Structure Of Banana
           Lectin- Methyl-Alpha-Mannose Complex
           gi|306440546|pdb|3MIT|A Chain A, Structure Of Banana
           Lectin-alpha-d-mannose Complex gi|306440547|pdb|3MIT|B
           Chain B, Structure Of Banana Lectin-alpha-d-mannose
           Complex gi|306440548|pdb|3MIU|A Chain A, Structure Of
           Banana Lectin-pentamannose Complex
           gi|306440549|pdb|3MIU|B Chain B, Structure Of Banana
           Lectin-pentamannose Complex gi|306440550|pdb|3MIV|A
           Chain A, Structure Of Banana Lectin - Glc-alpha(1,2)-glc
           Complex gi|306440551|pdb|3MIV|B Chain B, Structure Of
           Banana Lectin - Glc-alpha(1,2)-glc Complex
           gi|21392369|gb|AAM48480.1| lectin [Musa acuminata AAA
           Group]
          Length = 141

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 32/82 (39%), Positives = 42/82 (51%)
 Frame = -1

Query: 247 GGSGGQSHEFELIPGEYINSMVGSVKTYRGETRISKLEFKTNLXXXXXXXXXXXXKEFTV 68
           GGSGG  HE  L  GEY+  M G    Y G   + KL F TN               F++
Sbjct: 56  GGSGGTPHEIVLQEGEYLVGMKGEFGNYHGVVVVGKLGFSTN-KKSYGPFGNTGGTPFSL 114

Query: 67  PVVNGRIVGFFGQYTNYINAIG 2
           P+  G+I GFFG+  ++I+AIG
Sbjct: 115 PIAAGKISGFFGRGGDFIDAIG 136


>gb|ABS86034.1| mannose-binding lectin [Musa acuminata AAA Group]
          Length = 132

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 32/82 (39%), Positives = 42/82 (51%)
 Frame = -1

Query: 247 GGSGGQSHEFELIPGEYINSMVGSVKTYRGETRISKLEFKTNLXXXXXXXXXXXXKEFTV 68
           GGSGG  HE  L  GEY+  M G    Y G   + KL F TN               F++
Sbjct: 47  GGSGGTPHEIVLQEGEYLVGMKGEFGNYHGVVVVGKLGFSTN-KKSYGPFGNTGGTPFSL 105

Query: 67  PVVNGRIVGFFGQYTNYINAIG 2
           P+  G+I GFFG+  ++I+AIG
Sbjct: 106 PIAAGKISGFFGRGGDFIDAIG 127


>gb|ABS86033.1| mannose-specific recombinant lectin [synthetic construct]
          Length = 141

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 31/82 (37%), Positives = 41/82 (50%)
 Frame = -1

Query: 247 GGSGGQSHEFELIPGEYINSMVGSVKTYRGETRISKLEFKTNLXXXXXXXXXXXXKEFTV 68
           GGSGG  HE  L  GEY+  M G    Y G   + KL F TN               F++
Sbjct: 56  GGSGGTPHEIVLQEGEYLVGMAGEFGNYHGAVVLGKLGFSTN-NKAYGPFGNTGGTPFSL 114

Query: 67  PVVNGRIVGFFGQYTNYINAIG 2
           P+  G+I GFFG+   +++AIG
Sbjct: 115 PIAAGKISGFFGRGGKFLDAIG 136


Top