BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00005977
         (2952 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1285   0.0  
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...  1278   0.0  
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...  1278   0.0  
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...  1277   0.0  
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m...  1274   0.0  
emb|CBI27412.3| unnamed protein product [Vitis vinifera]             1271   0.0  
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...  1270   0.0  
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1265   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1259   0.0  
tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]        1249   0.0  
gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Tritic...  1246   0.0  
gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus pe...  1246   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1246   0.0  
ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays] gi|...  1246   0.0  
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]        1245   0.0  
emb|CAE52834.1| RNA polymerase [Hordeum vulgare]                     1244   0.0  
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1238   0.0  
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...  1238   0.0  
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1237   0.0  
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]  1236   0.0  

>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1285 bits (3326), Expect = 0.0
 Identities = 622/822 (75%), Positives = 705/822 (85%), Gaps = 2/822 (0%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELL DMCEQKLAPNLP+IKSL L WFEP RD IAAEQ++CK+  +++++AP+F+ L
Sbjct: 160  KEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHL 219

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT  G+GS  +V AAC IG+AIE EVRI RF+E          
Sbjct: 220  PADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSAS-- 277

Query: 2592 KSEEVEGDS--VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRL 2419
             S   +G S  V ++Q  LRKKV+ LMKKQK++Q+  IVKRQDDSKPWGQ A   VGSRL
Sbjct: 278  -SNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRL 336

Query: 2418 IELLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLD 2239
            IELL+ TAY+QPP  Q  D PPDIRPAF HT  T  KE +K TRRYGVIECDP++ + L+
Sbjct: 337  IELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLE 396

Query: 2238 KTARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVF 2059
            KTARHMVIPY+PMLVPP+NWTG+DKGA+L+L SYVMR HGARQQ++AIK+APRK ++  F
Sbjct: 397  KTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAF 456

Query: 2058 EALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXX 1879
            EALNTLGNTKWR+NK VL V++RIW+SGGRLADLVDRED+PLPE+P+TEDEAEIR     
Sbjct: 457  EALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWK 516

Query: 1878 XXXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 1699
                 KENSERHSQRCD+ELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDL
Sbjct: 517  VRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDL 576

Query: 1698 CRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPL 1519
            CRG+LEFAEGRPLGKSGL WLKIHLAN+YAGGVDKLSY+GR+AFTENHLEDI DSADRPL
Sbjct: 577  CRGILEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPL 636

Query: 1518 EGRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKL 1339
            EGRRWWL AEDPFQCLA CINL+EA+RSSSP  T+SH+PVHQDGSCNGLQHYAALGRDKL
Sbjct: 637  EGRRWWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKL 696

Query: 1338 GAIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQT 1159
            GA AVNLV+G+KPADVYS IAARV DIMQRDA++DPA  PNALRARLL++QVDRKLVKQT
Sbjct: 697  GAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQT 756

Query: 1158 VMTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMS 979
            VMTSVYGVTY+GARDQIK+RLKER  +AD+ E+FSASCYAAKTTLTALG+MFE+AR IMS
Sbjct: 757  VMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMS 816

Query: 978  WLGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQK 799
            WLGDCAK IAS+NHPVRW TPLGLPVVQPYR LG                 +KVMVKRQ+
Sbjct: 817  WLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQR 876

Query: 798  TAFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYE 619
            TAFPPNFVHSLDGSHMM+TA+AC+KAGL FAGVHDSYWTHACDVD++NRILREKFVELY 
Sbjct: 877  TAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYG 936

Query: 618  TPILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
             PILENLLE F+KSFP L FPPLPERGDF+L EVL+SPYFFN
Sbjct: 937  MPILENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
            gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
            Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
            single subunit RNA polymerase [Oryza sativa Japonica
            Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
            sativa Japonica Group]
          Length = 1017

 Score = 1278 bits (3306), Expect = 0.0
 Identities = 615/821 (74%), Positives = 707/821 (86%), Gaps = 1/821 (0%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            +EY+ELL DMC+QKLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHA +FN+L
Sbjct: 197  EEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNML 256

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRIH+FLE          
Sbjct: 257  PADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEM 316

Query: 2592 KSEEVEGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLI 2416
             +EE  GDS + ++Q  LRKKVT LMKKQKIRQ+  IVK+QD+SKPWGQ A A VGSRLI
Sbjct: 317  DNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLI 376

Query: 2415 ELLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDK 2236
            EL++ TAY+QPP SQSAD PPDIRPAF H   T  +E +K +RRYGVI+CDP++ Q LD+
Sbjct: 377  ELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDR 436

Query: 2235 TARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFE 2056
            TA+HMVIPY+PML+PPI+WTG+DKGAHL+L SYVMRTHGARQQ+ A+++APR+ MQ+VFE
Sbjct: 437  TAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFE 496

Query: 2055 ALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXX 1876
            ALNTLG+TKWRVNK VLS+V+RIWSSGGRLADLVDR D+ LPEKP+TEDE +++      
Sbjct: 497  ALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTL 556

Query: 1875 XXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1696
                KENSERHSQRCDVELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 557  RAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 616

Query: 1695 RGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLE 1516
            RGVLEFAEGRPLGKSGL WLKIHLANLYAGGVDKLSYDGR+AFTENHLEDI DSADRPLE
Sbjct: 617  RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLE 676

Query: 1515 GRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLG 1336
            G+RWWLGAEDPFQCLAVCINL EA+RS SP   +SHIPVHQDGSCNGLQHYAALGRDKLG
Sbjct: 677  GKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLG 736

Query: 1335 AIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTV 1156
            AIAVNLV+G+KPADVY+ IA RV +IM+ DA +DPA +P+A RARLL++QVDRKLVKQTV
Sbjct: 737  AIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTV 796

Query: 1155 MTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSW 976
            MTSVYGVTYVGAR+QIK+RLKER+++ DD+E+FSASCYAAK TLTALG+MF++AR IM+W
Sbjct: 797  MTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNW 856

Query: 975  LGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKT 796
            LGDCAK IA +N PVRWTTPLGLPVVQPYR LG                 +KVMVKRQ+T
Sbjct: 857  LGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRT 916

Query: 795  AFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYET 616
            AFPPNFVHSLDGSHMM+TA+ACK+ GL FAGVHDSYWTHACDVD +N+ILREKFVELY+T
Sbjct: 917  AFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDT 976

Query: 615  PILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            PILENLLESFEKSFP L FPPLPERGDF+L +VL SPYFFN
Sbjct: 977  PILENLLESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 1017


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score = 1278 bits (3306), Expect = 0.0
 Identities = 615/821 (74%), Positives = 707/821 (86%), Gaps = 1/821 (0%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            +EY+ELL DMC+QKLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHA +FN+L
Sbjct: 163  EEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNML 222

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRIH+FLE          
Sbjct: 223  PADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEM 282

Query: 2592 KSEEVEGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLI 2416
             +EE  GDS + ++Q  LRKKVT LMKKQKIRQ+  IVK+QD+SKPWGQ A A VGSRLI
Sbjct: 283  DNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLI 342

Query: 2415 ELLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDK 2236
            EL++ TAY+QPP SQSAD PPDIRPAF H   T  +E +K +RRYGVI+CDP++ Q LD+
Sbjct: 343  ELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDR 402

Query: 2235 TARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFE 2056
            TA+HMVIPY+PML+PPI+WTG+DKGAHL+L SYVMRTHGARQQ+ A+++APR+ MQ+VFE
Sbjct: 403  TAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFE 462

Query: 2055 ALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXX 1876
            ALNTLG+TKWRVNK VLS+V+RIWSSGGRLADLVDR D+ LPEKP+TEDE +++      
Sbjct: 463  ALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTL 522

Query: 1875 XXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1696
                KENSERHSQRCDVELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 523  RAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 582

Query: 1695 RGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLE 1516
            RGVLEFAEGRPLGKSGL WLKIHLANLYAGGVDKLSYDGR+AFTENHLEDI DSADRPLE
Sbjct: 583  RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLE 642

Query: 1515 GRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLG 1336
            G+RWWLGAEDPFQCLAVCINL EA+RS SP   +SHIPVHQDGSCNGLQHYAALGRDKLG
Sbjct: 643  GKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLG 702

Query: 1335 AIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTV 1156
            AIAVNLV+G+KPADVY+ IA RV +IM+ DA +DPA +P+A RARLL++QVDRKLVKQTV
Sbjct: 703  AIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTV 762

Query: 1155 MTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSW 976
            MTSVYGVTYVGAR+QIK+RLKER+++ DD+E+FSASCYAAK TLTALG+MF++AR IM+W
Sbjct: 763  MTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNW 822

Query: 975  LGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKT 796
            LGDCAK IA +N PVRWTTPLGLPVVQPYR LG                 +KVMVKRQ+T
Sbjct: 823  LGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRT 882

Query: 795  AFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYET 616
            AFPPNFVHSLDGSHMM+TA+ACK+ GL FAGVHDSYWTHACDVD +N+ILREKFVELY+T
Sbjct: 883  AFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDT 942

Query: 615  PILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            PILENLLESFEKSFP L FPPLPERGDF+L +VL SPYFFN
Sbjct: 943  PILENLLESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 983


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
            gi|241924412|gb|EER97556.1| hypothetical protein
            SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score = 1277 bits (3304), Expect = 0.0
 Identities = 617/822 (75%), Positives = 706/822 (85%), Gaps = 2/822 (0%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELL DMCEQKLAPNLP+IKSL L WFEP RD I  EQE+     S++SH P+FN+L
Sbjct: 155  KEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLRDQIVTEQELVADPGSRASHGPYFNML 214

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRI+RFLE          
Sbjct: 215  PADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKSNKEM 274

Query: 2592 KSEE-VEGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRL 2419
            + EE   GD+ + ++Q  LRKKVT LMKKQK+RQ+  IVK QD+S+PWGQ  QA VGSRL
Sbjct: 275  EKEEEAAGDTDIAKEQQRLRKKVTDLMKKQKLRQVRNIVKNQDNSRPWGQDVQAKVGSRL 334

Query: 2418 IELLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLD 2239
            IEL M+TA++QPP SQS+D  PDIRPAFRH   T  KE +K +RRYGVI+CDP++ Q LD
Sbjct: 335  IELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLD 394

Query: 2238 KTARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVF 2059
            +TA+HMVIPY+PML+PPI WTG+DKGAHL+L SYVMRTHGARQQ++A+K+APR+ MQ+VF
Sbjct: 395  RTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVF 454

Query: 2058 EALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXX 1879
            EALNTLG+TKWRVNK VLS+V+RIWSSGGRLADLVDR D+PLPEKP+TEDE  I+     
Sbjct: 455  EALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVPLPEKPDTEDETLIKNWKWH 514

Query: 1878 XXXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 1699
                 KENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL
Sbjct: 515  LRSVKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 574

Query: 1698 CRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPL 1519
            CRG+LEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGR+AFTENHLE+I DSADRPL
Sbjct: 575  CRGILEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRVAFTENHLEEIFDSADRPL 634

Query: 1518 EGRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKL 1339
            EG+RWWLGAEDPFQCLAVC+NL EA+RSSSP  T+SHIPVHQDGSCNGLQHYAALGRDKL
Sbjct: 635  EGKRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKL 694

Query: 1338 GAIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQT 1159
            GAIAVNLV+G+KPADVY+ IA RV +IM+ DA++DP+ +P+  RARL+V+QVDRKLVKQT
Sbjct: 695  GAIAVNLVAGEKPADVYTGIATRVLEIMRMDAQKDPSIDPDVARARLIVDQVDRKLVKQT 754

Query: 1158 VMTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMS 979
            VMTSVYGVTYVGARDQIK+RLKER ++ D+AE+F ASCYAAK TLTALG+MF++AR IM+
Sbjct: 755  VMTSVYGVTYVGARDQIKRRLKERGVIPDEAELFGASCYAAKVTLTALGEMFQAARGIMN 814

Query: 978  WLGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQK 799
            WLGDCAK IA +N PVRWTTPLGLPVVQPYR LG                 +KVMVKRQ+
Sbjct: 815  WLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQR 874

Query: 798  TAFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYE 619
            TAFPPNFVHSLDGSHMM+TA+ACK+ GL FAGVHDSYWTHACDVD +N+ILREKFVELY+
Sbjct: 875  TAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYD 934

Query: 618  TPILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            TPILENLLESFEKSFP L FPPLPERGDF++ EVL+SPYFFN
Sbjct: 935  TPILENLLESFEKSFPKLKFPPLPERGDFDMKEVLESPYFFN 976


>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
            [Setaria italica]
          Length = 1005

 Score = 1275 bits (3298), Expect = 0.0
 Identities = 614/821 (74%), Positives = 706/821 (85%), Gaps = 1/821 (0%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELL DMCEQKLAPNLP+IKSL L WFEP RD IAAEQE+     S++SH P+FN+L
Sbjct: 185  KEYRELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDQIAAEQELVANRGSRASHGPYFNML 244

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRIHRFLE          
Sbjct: 245  PADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHRFLEKTRKKSNKEK 304

Query: 2592 KSEEVEGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLI 2416
            ++EE   DS + ++Q  LRKKVT LMKKQK+RQ+  IVK QDDS+PWGQ A A VGSRLI
Sbjct: 305  ENEEEIFDSDIAKEQQRLRKKVTDLMKKQKLRQVRKIVKNQDDSRPWGQDAHAKVGSRLI 364

Query: 2415 ELLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDK 2236
            EL + TA++QPP SQS+D  PDIRPAFRH   T  KE +K +RRYGVI+CDP++ Q LD+
Sbjct: 365  ELFIETAHIQPPASQSSDGLPDIRPAFRHEMRTVPKEQQKHSRRYGVIKCDPLVRQGLDR 424

Query: 2235 TARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFE 2056
            TA+HMVIPY+PML+PPI WTG+DKGAHL+L SYVMRTHGARQQ++A+K+APR+ MQ+VFE
Sbjct: 425  TAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFE 484

Query: 2055 ALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXX 1876
            ALNTLG+TKWRVNK VLS+++RIWSSGGRLADLVDR D+PLPEKP+TEDE  ++      
Sbjct: 485  ALNTLGSTKWRVNKRVLSIIDRIWSSGGRLADLVDRTDVPLPEKPDTEDETVLKKWRWHT 544

Query: 1875 XXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1696
                K NSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 545  RSVKKGNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 604

Query: 1695 RGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLE 1516
            RGVLEFAEGRPLG+SGL WLKIHLANLYAGGVDKLSY GR+AF ENHLE+I DSADRPLE
Sbjct: 605  RGVLEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYAGRIAFAENHLEEIFDSADRPLE 664

Query: 1515 GRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLG 1336
            G+RWWLGAEDPFQCLAVC+NL EA+RS SP AT+SHIPVHQDGSCNGLQHYAALGRDKLG
Sbjct: 665  GKRWWLGAEDPFQCLAVCMNLTEALRSPSPEATISHIPVHQDGSCNGLQHYAALGRDKLG 724

Query: 1335 AIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTV 1156
            AIAVNLV+G+KPADVYS IA RV +IM+RD+++DP+ +P+A RARL+++QVDRKLVKQTV
Sbjct: 725  AIAVNLVAGEKPADVYSGIATRVVEIMRRDSQKDPSTDPDAARARLILDQVDRKLVKQTV 784

Query: 1155 MTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSW 976
            MTSVYGVTYVGAR+QIK+RLKER ++ADDAE+F ASCYAAK TLTALG+MF++AR IM+W
Sbjct: 785  MTSVYGVTYVGAREQIKRRLKERGVIADDAELFGASCYAAKVTLTALGEMFQAARSIMNW 844

Query: 975  LGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKT 796
            LGDCAK IA +N PV+WTTPLGLPVVQPYR LG                 +KVMVKRQ+T
Sbjct: 845  LGDCAKVIACENEPVKWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRT 904

Query: 795  AFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYET 616
            AFPPNFVHSLDGSHMM+TA+ACK+ GL FAGVHDSYWTHACDVD +N+ILREKFVELY+T
Sbjct: 905  AFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDT 964

Query: 615  PILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            PILENLLESFEKSFP L FPPLPERGDF++ +VL+SPYFFN
Sbjct: 965  PILENLLESFEKSFPKLKFPPLPERGDFDMKDVLESPYFFN 1005


>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score = 1271 bits (3289), Expect = 0.0
 Identities = 615/813 (75%), Positives = 697/813 (85%), Gaps = 2/813 (0%)
 Frame = -1

Query: 2925 MCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLPADMMAVIT 2746
            MCEQKLAPNLP+IKSL L WFEP RD IAAEQ++CK+  +++++AP+F+ LPADMMAVIT
Sbjct: 1    MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60

Query: 2745 MHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXKSEEVEGDS 2566
            MHKLMGL+MT  G+GS  +V AAC IG+AIE EVRI RF+E           S   +G S
Sbjct: 61   MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSAS---SNNPDGGS 117

Query: 2565 --VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIELLMNTAY 2392
              V ++Q  LRKKV+ LMKKQK++Q+  IVKRQDDSKPWGQ A   VGSRLIELL+ TAY
Sbjct: 118  NPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAY 177

Query: 2391 VQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDKTARHMVIP 2212
            +QPP  Q  D PPDIRPAF HT  T  KE +K TRRYGVIECDP++ + L+KTARHMVIP
Sbjct: 178  IQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIP 237

Query: 2211 YVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFEALNTLGNT 2032
            Y+PMLVPP+NWTG+DKGA+L+L SYVMR HGARQQ++AIK+APRK ++  FEALNTLGNT
Sbjct: 238  YMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNT 297

Query: 2031 KWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXXXXXXKENS 1852
            KWR+NK VL V++RIW+SGGRLADLVDRED+PLPE+P+TEDEAEIR          KENS
Sbjct: 298  KWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENS 357

Query: 1851 ERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAE 1672
            ERHSQRCD+ELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEFAE
Sbjct: 358  ERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAE 417

Query: 1671 GRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLEGRRWWLGA 1492
            GRPLGKSGL WLKIHLAN+YAGGVDKLSY+GR+AFTENHLEDI DSADRPLEGRRWWL A
Sbjct: 418  GRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSA 477

Query: 1491 EDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVS 1312
            EDPFQCLA CINL+EA+RSSSP  T+SH+PVHQDGSCNGLQHYAALGRDKLGA AVNLV+
Sbjct: 478  EDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVA 537

Query: 1311 GDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTVMTSVYGVT 1132
            G+KPADVYS IAARV DIMQRDA++DPA  PNALRARLL++QVDRKLVKQTVMTSVYGVT
Sbjct: 538  GEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVT 597

Query: 1131 YVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSWLGDCAKTI 952
            Y+GARDQIK+RLKER  +AD+ E+FSASCYAAKTTLTALG+MFE+AR IMSWLGDCAK I
Sbjct: 598  YIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVI 657

Query: 951  ASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKTAFPPNFVH 772
            AS+NHPVRW TPLGLPVVQPYR LG                 +KVMVKRQ+TAFPPNFVH
Sbjct: 658  ASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVH 717

Query: 771  SLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYETPILENLLE 592
            SLDGSHMM+TA+AC+KAGL FAGVHDSYWTHACDVD++NRILREKFVELY  PILENLLE
Sbjct: 718  SLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLE 777

Query: 591  SFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
             F+KSFP L FPPLPERGDF+L EVL+SPYFFN
Sbjct: 778  GFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 810


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
            X2 [Oryza brachyantha]
          Length = 839

 Score = 1270 bits (3287), Expect = 0.0
 Identities = 611/821 (74%), Positives = 704/821 (85%), Gaps = 1/821 (0%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELL DMCE KLAPNLP++KSL L WFEP RD I AEQ++  +  +++SHA +FN+L
Sbjct: 19   KEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQDLVCERRARASHARYFNML 78

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVR+H+FLE          
Sbjct: 79   PADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKRSKEM 138

Query: 2592 KSEEVEGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLI 2416
             +EE  G S + ++Q  LRKKVT LMKK K+RQ+  IVK+QD+SKPWGQ   A VGSRLI
Sbjct: 139  DNEEEVGCSDIAKEQERLRKKVTDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRLI 198

Query: 2415 ELLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDK 2236
            EL++ TAY+QPP SQSAD PPDIRPAF H   T  KE +K +RRYGVI+CDP++ Q LD+
Sbjct: 199  ELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDR 258

Query: 2235 TARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFE 2056
            TA+HMVIPY+PML+PPI+WTG+DKGAHL+L SYVMRTHGARQQ++A+K+APR+ MQ+VFE
Sbjct: 259  TAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFE 318

Query: 2055 ALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXX 1876
            AL+TLG+TKWRVNK VLS+V+RIWSSGGRLADLVDR D+ LPEKP+TEDEA+++      
Sbjct: 319  ALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRSDVALPEKPDTEDEAKLKKWRWNL 378

Query: 1875 XXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1696
                KENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 379  KAAKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 438

Query: 1695 RGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLE 1516
            RGVLEFAEGRPLGKSGL WLKIHLANLYAGGVDKLSYDGR+AFTENHLEDI DSADRPLE
Sbjct: 439  RGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLE 498

Query: 1515 GRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLG 1336
            G+RWWLGAEDPFQCLAVCINL EA+RS SP   +SHIPVHQDGSCNGLQHYAALGRDKLG
Sbjct: 499  GKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLG 558

Query: 1335 AIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTV 1156
            AIAVNLV+G+KPADVY+ IA RV +IM+ DA +DPA +P+A RAR+LV+QVDRKLVKQTV
Sbjct: 559  AIAVNLVAGEKPADVYTGIATRVLEIMRNDALKDPATDPDAARARMLVDQVDRKLVKQTV 618

Query: 1155 MTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSW 976
            MTSVYGVTYVGAR+QIK+RLKER+++ DD+E+FSASCYAAK TLTALG+MF++AR IM+W
Sbjct: 619  MTSVYGVTYVGAREQIKRRLKERDMIGDDSELFSASCYAAKVTLTALGEMFQAARSIMNW 678

Query: 975  LGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKT 796
            LGDCAK IA +N PV+WTTPLGLPVVQPYR LG                 +KVMVKRQ+T
Sbjct: 679  LGDCAKIIACENEPVKWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRT 738

Query: 795  AFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYET 616
            AFPPNFVHSLDGSHMM+TA+ACK+ GL FAGVHDSYWTHACDVD +N+ILREKFVELY+T
Sbjct: 739  AFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDT 798

Query: 615  PILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            PILENLL SFEKSFP L FPPLPERGDF+L +VL SPYFFN
Sbjct: 799  PILENLLGSFEKSFPELKFPPLPERGDFDLKDVLGSPYFFN 839


>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Brachypodium
            distachyon]
          Length = 992

 Score = 1265 bits (3273), Expect = 0.0
 Identities = 611/821 (74%), Positives = 703/821 (85%), Gaps = 1/821 (0%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELL DMCE KLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHAP+FN+L
Sbjct: 172  KEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHAPYFNML 231

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRIH+FLE          
Sbjct: 232  PADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKNTKEV 291

Query: 2592 KSEEVEGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLI 2416
             +    GDS + ++Q  LRKKVT LMKKQKIRQ+  IVK+QD ++PWGQ A A VGSRLI
Sbjct: 292  DNVVEAGDSDIAKEQQRLRKKVTDLMKKQKIRQVRNIVKKQDSTRPWGQDAHAKVGSRLI 351

Query: 2415 ELLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDK 2236
            ELL+ TA++QPPVSQSAD+ PDIRPAF H   T  +E +K +RRYGVI+CDP+I Q LD+
Sbjct: 352  ELLIETAHIQPPVSQSADSTPDIRPAFTHEMRTVTREQQKSSRRYGVIKCDPLIRQGLDR 411

Query: 2235 TARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFE 2056
            TA+HMVIPY+PML+PPI+WTG+DKGAHL+L SYVMRTHGARQQ++A+KKAP++ MQ +FE
Sbjct: 412  TAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQLIFE 471

Query: 2055 ALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXX 1876
            AL+TLG+TKWR+NK VLS+V+RIWSSGGRLADLVDR D+ LPEKP+TEDE E++      
Sbjct: 472  ALDTLGSTKWRINKKVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDETELKKWRWNL 531

Query: 1875 XXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1696
                KENSERHSQRCDVELKLAVARKMKDE GFYYPHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 532  RSVKKENSERHSQRCDVELKLAVARKMKDEVGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 591

Query: 1695 RGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLE 1516
            RGVLEF+EGRPLG SGL WLKIHLANLYAGGVDKLSYDGR+AFTENHLEDI DSA+RPLE
Sbjct: 592  RGVLEFSEGRPLGDSGLCWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSANRPLE 651

Query: 1515 GRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLG 1336
            G+RWWLGAEDPFQCLAVC++L EA+RSSSP A +SHIPVHQDGSCNGLQHYAALGRDKLG
Sbjct: 652  GKRWWLGAEDPFQCLAVCMDLTEALRSSSPEAMISHIPVHQDGSCNGLQHYAALGRDKLG 711

Query: 1335 AIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTV 1156
            AIAVNLVSG+KPADVYS IA RV +IM+RDA++DPA +P+A RARLLV+QVDRKLVKQTV
Sbjct: 712  AIAVNLVSGEKPADVYSGIATRVVEIMRRDAQKDPALDPDAARARLLVDQVDRKLVKQTV 771

Query: 1155 MTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSW 976
            MTSVYGVTYVGAR+QIK+RLKER ++ DD+E+F+ASCYAAK TLTALG+MFE+AR IM+W
Sbjct: 772  MTSVYGVTYVGAREQIKRRLKERGVIGDDSELFAASCYAAKVTLTALGEMFEAARSIMNW 831

Query: 975  LGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKT 796
            LGDCAK IA +N PVRW TPLGLPVVQPYR LG                 +KVMVKRQ+T
Sbjct: 832  LGDCAKVIACENEPVRWMTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRT 891

Query: 795  AFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYET 616
            AFPPNFVHSLDGSHMM+TA+AC K GL FAGVHDSYWTHACDVD +N+ILREKFVELY+ 
Sbjct: 892  AFPPNFVHSLDGSHMMMTAVACNKQGLYFAGVHDSYWTHACDVDTMNKILREKFVELYDA 951

Query: 615  PILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            PILENLL+SFE SFP L FPPLPERGDF+LN+VL SPYFFN
Sbjct: 952  PILENLLDSFETSFPTLRFPPLPERGDFDLNDVLQSPYFFN 992


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1259 bits (3257), Expect = 0.0
 Identities = 609/822 (74%), Positives = 698/822 (84%), Gaps = 2/822 (0%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEYKELLMDMCEQKLAPNLP++KSL L WFEP RDAI  EQE+C+   +K+++AP+F+ L
Sbjct: 214  KEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQL 273

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMM+VITMHKL+GL+MT   HGS  +V AAC IGDAIEQEVRIH FLE          
Sbjct: 274  PADMMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKD 333

Query: 2592 KSEEVEG-DSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLI 2416
            K+ E  G D V+ +Q  LRKKVT LMKKQK+     IVK  D+SKPWG  A+A VGSRLI
Sbjct: 334  KNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLI 393

Query: 2415 ELLMNTAYVQPPV-SQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLD 2239
            ELLM TAY+QPPV +Q AD PPDIRPAF HT  T  +E KK+ RR+GVIECDP++ + L+
Sbjct: 394  ELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLE 453

Query: 2238 KTARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVF 2059
            +TARHMVIPYVPMLVPP+ WTG+DKGAHL+L SYVMRTHGARQQ++A+K+APR  ++ VF
Sbjct: 454  RTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVF 513

Query: 2058 EALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXX 1879
            EALNTLGNTKWR+NK +  VV+RIW+ GG LADLVDR D+PLPEKP+TEDEA++R     
Sbjct: 514  EALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWK 573

Query: 1878 XXXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 1699
                 K NSERHSQRCD+ELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDL
Sbjct: 574  VKSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDL 633

Query: 1698 CRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPL 1519
            CRG+LEFAEGRPLG SGLHWLKIHLANL+AGGVDKLS++GR+ FTENHL+DI DSADRPL
Sbjct: 634  CRGILEFAEGRPLGSSGLHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPL 693

Query: 1518 EGRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKL 1339
            EG+RWWL AEDPFQ LA CINL+EA+RSSSP  T+SHIPVHQDGSCNGLQHYAALGRD+L
Sbjct: 694  EGKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQL 753

Query: 1338 GAIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQT 1159
            GA AVNLV+G+KPADVYS IAARV DIM+RDAE+DPA  P+ALRAR+L+NQVDRKLVKQT
Sbjct: 754  GATAVNLVAGEKPADVYSGIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQT 813

Query: 1158 VMTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMS 979
            VMTSVYGVTY+GARDQIK+RLKERN +ADD E+F A+CYAAK TLTALG+MF++AR IMS
Sbjct: 814  VMTSVYGVTYIGARDQIKRRLKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMS 873

Query: 978  WLGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQK 799
            WLGDCAK IAS+N PVRWTTPLGLPVVQPYR LG                 E +MVKRQ+
Sbjct: 874  WLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQR 933

Query: 798  TAFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYE 619
            TAFPPNFVHSLDGSHMM+TA+ACKKAGL FAGVHDSYWTHACDVD++NR+LREKFV+LYE
Sbjct: 934  TAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYE 993

Query: 618  TPILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            TPILENLLESF++SFP L FPPLPERGDF+L EVL+SPYFFN
Sbjct: 994  TPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 1035


>tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
          Length = 975

 Score = 1249 bits (3233), Expect = 0.0
 Identities = 603/820 (73%), Positives = 697/820 (85%), Gaps = 1/820 (0%)
 Frame = -1

Query: 2949 EYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLP 2770
            EY+ELL DMCEQKLAPNLP++KSL L WFEP RD IA EQE+     S++SH PFF++LP
Sbjct: 156  EYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRDQIATEQELVADPGSRASHGPFFSMLP 215

Query: 2769 ADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXK 2590
            ADMMAVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRI+RFLE          +
Sbjct: 216  ADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEME 275

Query: 2589 SEEVEGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIE 2413
            +EE  GD+ +  +Q  LRKKVT LMKKQK+RQ+  IVK QD S+PWGQ A A VGSRLI+
Sbjct: 276  NEEEAGDTNIAIEQQRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLID 335

Query: 2412 LLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDKT 2233
            L + TA++QPP SQS+D  PDIRPAFRH   T  KE +K +RRYGVI+CDP++ Q LD+T
Sbjct: 336  LFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRT 395

Query: 2232 ARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFEA 2053
            A+HMVIPY+PML+PPI WTG+DKGAHL+L SYVMRTHGARQQ+ A+K+APR+ MQ VFEA
Sbjct: 396  AKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEA 455

Query: 2052 LNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXXX 1873
            LNTLG+TKWRVNK VLS+V+RIWS+GGRLADLVDR D+P+PEKP+TEDE  ++       
Sbjct: 456  LNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVDRTDVPVPEKPDTEDETLLKNWKWHLR 515

Query: 1872 XXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1693
               K+NSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 516  AAKKKNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 575

Query: 1692 GVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLEG 1513
            GVLEFAEGRPLGKSGL WLKIHLANLYA GVDKLSYDGR+AF ENHLE+I DSADRPLEG
Sbjct: 576  GVLEFAEGRPLGKSGLRWLKIHLANLYAAGVDKLSYDGRIAFAENHLEEIFDSADRPLEG 635

Query: 1512 RRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLGA 1333
            RRWWLGAEDPFQCLAVC+NL EA+RSSSP  T+SHIPVHQDGSCNGLQHYAALG+DKLGA
Sbjct: 636  RRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGKDKLGA 695

Query: 1332 IAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTVM 1153
            IAVNLV+G+KPADVY+ IA RV +IM+ DA++DP+  P+A RARL+V+QVDRKLVKQTVM
Sbjct: 696  IAVNLVAGEKPADVYTGIANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLVKQTVM 755

Query: 1152 TSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSWL 973
            TSVYGVTY+GAR+QI++RLKER ++ +D+E+F ASCYAAK TLTALG+MF++AR IM+WL
Sbjct: 756  TSVYGVTYIGAREQIRRRLKERGVIPNDSELFGASCYAAKVTLTALGEMFQAARSIMNWL 815

Query: 972  GDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKTA 793
            GDCAK IA +N PVRWTTPLGLPVVQPYR LG                 +KVMVKRQ+TA
Sbjct: 816  GDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTA 875

Query: 792  FPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYETP 613
            FPPNFVHSLDGSHMM+TA+ACK+ GL FAGVHDSYWTHA DVD +N+ILREKFVELY+TP
Sbjct: 876  FPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHASDVDTMNKILREKFVELYDTP 935

Query: 612  ILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            ILENLLESFEKSFP L FPPLPERGDF++ EVL+S YFFN
Sbjct: 936  ILENLLESFEKSFPKLKFPPLPERGDFDMKEVLESTYFFN 975


>gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
          Length = 1005

 Score = 1246 bits (3225), Expect = 0.0
 Identities = 600/822 (72%), Positives = 699/822 (85%), Gaps = 2/822 (0%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELL DMCE KLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHAP+FN+L
Sbjct: 186  KEYRELLADMCEHKLAPNLPYVKSLFLSWFEPLRDQIIAEQELVSERGTRASHAPYFNML 245

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT +G GSV ++ AACQIG+A+E EVRIH+FLE          
Sbjct: 246  PADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEV 305

Query: 2592 KS--EEVEGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRL 2419
                E V+ D + ++Q  LRKKVT LMKKQKIRQ+  +VK+QD ++PWGQ A A VGSRL
Sbjct: 306  DKVVEAVDAD-IAKEQERLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRL 364

Query: 2418 IELLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLD 2239
            IEL + TA++QPP SQS D+ P+IRPAF H   T  +E +K +RRYGVI+CDP++ Q LD
Sbjct: 365  IELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVAREQRK-SRRYGVIKCDPLVRQGLD 423

Query: 2238 KTARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVF 2059
            +TA+HMVIPY+PML+PPINWTG+DKGAHL+L SYVMRTHGARQQ++A+KKAP++ MQT+F
Sbjct: 424  RTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIF 483

Query: 2058 EALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXX 1879
            EAL+ LG+TKWRVNK VLS+V+RIWSSGGRLADLVDR D+ LPEKP+TEDEAE++     
Sbjct: 484  EALDNLGSTKWRVNKEVLSIVDRIWSSGGRLADLVDRADVSLPEKPDTEDEAELKKWRWS 543

Query: 1878 XXXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 1699
                 KENSERHSQRCDVELKLAVARKMK+E GFYYPHNLDFRGRAYPMHPYLNHLGSDL
Sbjct: 544  MRSAEKENSERHSQRCDVELKLAVARKMKEEAGFYYPHNLDFRGRAYPMHPYLNHLGSDL 603

Query: 1698 CRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPL 1519
            CRGVLEF+EGRPLG+SGL WLKIHLANLY GGVDKLSYDGR+AFTENHL+DI DSA+RPL
Sbjct: 604  CRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYDGRIAFTENHLDDIFDSANRPL 663

Query: 1518 EGRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKL 1339
            EG+RWWL AEDPFQCLAVC++L EA+RS SP   +SHIPVHQDGSCNGLQHYAALGRDKL
Sbjct: 664  EGKRWWLEAEDPFQCLAVCMDLNEALRSPSPETVISHIPVHQDGSCNGLQHYAALGRDKL 723

Query: 1338 GAIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQT 1159
            GA+AVNLVSG+KPADVYS IAARV +IM+RDA++DPA++ +A RARLLV+QVDRKLVKQT
Sbjct: 724  GAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKDPAKDADAARARLLVDQVDRKLVKQT 783

Query: 1158 VMTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMS 979
            VMTSVYGVTYVGAR+QIK+RLKER ++ADD+E+F ASCYAAK TLTALG+MFE+AR IM+
Sbjct: 784  VMTSVYGVTYVGAREQIKRRLKERGVIADDSELFGASCYAAKVTLTALGEMFEAARSIMT 843

Query: 978  WLGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQK 799
            WLGDCAK IA +N PVRWTTPLGLPVVQPYR LG                 +KVMVKRQ+
Sbjct: 844  WLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQR 903

Query: 798  TAFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYE 619
            TAFPPNFVHSLDGSHMM+TA+ACKK GL FAGVHDSYWTHACDVD +N+ILREKFVELY+
Sbjct: 904  TAFPPNFVHSLDGSHMMMTAVACKKQGLYFAGVHDSYWTHACDVDTMNKILREKFVELYD 963

Query: 618  TPILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
             PILENLLESFE SFP L FPPLPERG+F++ +VL S YFFN
Sbjct: 964  APILENLLESFETSFPKLKFPPLPERGNFDMKDVLQSTYFFN 1005


>gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score = 1246 bits (3224), Expect = 0.0
 Identities = 602/835 (72%), Positives = 695/835 (83%), Gaps = 15/835 (1%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELL DMCEQKLAPNLP+IKSL L WFEP RDAIAA+Q+ CK+ NS+ SHAP+F+ L
Sbjct: 172  KEYQELLADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPYFDHL 231

Query: 2772 PADMMAVITMHKLMGLVMTNTGH-GSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXX 2596
            PAD MAVITMHKLMGL+MTN G  GSV +V AAC IG+AIE EVRIHRFLE         
Sbjct: 232  PADKMAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKKKNTI 291

Query: 2595 XKSEEV--------------EGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKP 2458
             K  E               E + + ++Q  LRKKV  L+K+QK++Q+  IVK Q+D KP
Sbjct: 292  DKKAEADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKP 351

Query: 2457 WGQAAQAMVGSRLIELLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYG 2278
            WGQ A   VG RLI+LLM+TAY+QPPV Q  D PPDIRPAF H   T  ++ +K +RRYG
Sbjct: 352  WGQEAHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYG 411

Query: 2277 VIECDPVILQRLDKTARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQA 2098
            VIECDP++ + ++KTARHMV+PY+PMLVPPINWTG+D+GA+L+L SYVMRTHGA+QQ++ 
Sbjct: 412  VIECDPIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREV 471

Query: 2097 IKKAPRKTMQTVFEALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPN 1918
            +K+ PRK ++ VFEAL+TLG+TKWRVNK VL V++RIW+SGGRLADLVDRED+PLPE+P+
Sbjct: 472  VKRTPRKQLEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPD 531

Query: 1917 TEDEAEIRXXXXXXXXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAY 1738
            TEDEAEIR          KENSERHSQRCD+ELKLA +RKMKDEEGFYYPHNLDFRGRAY
Sbjct: 532  TEDEAEIRKWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAY 591

Query: 1737 PMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTEN 1558
            PMHPYLNHLGSD+CRG+LEF+EGR LGKSGL WLKIHLANLYAGGVDKLS+D R AFTEN
Sbjct: 592  PMHPYLNHLGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAAFTEN 651

Query: 1557 HLEDIIDSADRPLEGRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCN 1378
            H+++I DSADRPLEGRRWWLGAEDPFQCLA CINL EA+RS SP  T+S++PVHQDGSCN
Sbjct: 652  HVDEIFDSADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCN 711

Query: 1377 GLQHYAALGRDKLGAIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARL 1198
            GLQHYAALGRDKLGA AVNLV GDKPADVYS IAARV DIM+ DAE+DPA NPNAL ARL
Sbjct: 712  GLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARL 771

Query: 1197 LVNQVDRKLVKQTVMTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTA 1018
            L+NQVDRKLVKQTVMTSVYGVTYVGARDQIK+RLKER  +ADD  +F+A+CYAA+TTLTA
Sbjct: 772  LINQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTA 831

Query: 1017 LGQMFESARKIMSWLGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXX 838
            LG+MFE+AR IMSWLG+CAK IAS+N PVRW TPLGLPVVQPYR LG             
Sbjct: 832  LGEMFEAARSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTL 891

Query: 837  XXXXEKVMVKRQKTAFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQL 658
                +KVMVKRQ+TAFPPNFVHSLDGSHMM+TA+ACKKAGL FAGVHDSYWTHACD+D++
Sbjct: 892  QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEM 951

Query: 657  NRILREKFVELYETPILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            NRILREKFVELYE PILENLLE F++SFP L FPPLP+RGDF+L +VL+SPYFFN
Sbjct: 952  NRILREKFVELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 597/820 (72%), Positives = 693/820 (84%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELLMDMCEQKLAPNLP++KSL L WFEP RDAIAAEQ++C +  ++ ++APFF+ L
Sbjct: 186  KEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQL 245

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PA+MMAVITMHKLMGL+MT  G GS  +V AA  IG+AIE E RIHRFLE          
Sbjct: 246  PAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSG 305

Query: 2592 KSEEVEGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIE 2413
              EE  GD +M+++  LRKKV  LMKKQK+RQ+  IVK+QDD KPWGQ     VG RLI+
Sbjct: 306  DLEETPGD-MMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQ 364

Query: 2412 LLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDKT 2233
            +LM TAY+QPP  Q  D PPDIRPAF HT  T   E  K +RRYGVI+CDP++ + LDKT
Sbjct: 365  ILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKT 422

Query: 2232 ARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFEA 2053
            ARHMVIPY+PMLVPP +W G+DKG +L+L SY+MRTHGA+QQ++A+K+ P+K ++ VF+A
Sbjct: 423  ARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQA 482

Query: 2052 LNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXXX 1873
            L+TLGNTKWRVN+ VL +V+RIW+SGGRLADLVDRED+PLPE P+TEDEAEIR       
Sbjct: 483  LDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVK 542

Query: 1872 XXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1693
               KEN ERHSQRCD+ELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 543  GVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 602

Query: 1692 GVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLEG 1513
            G+LEFAEGRPLG SGL WLKIHLAN+Y GGVDKLSY+GR+AF+ENHLEDI DSA+RPLEG
Sbjct: 603  GILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEG 662

Query: 1512 RRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLGA 1333
            +RWWLGAEDPFQCLA CIN+AEA+RS SP   +S++P+HQDGSCNGLQHYAALGRDKLGA
Sbjct: 663  KRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGA 722

Query: 1332 IAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTVM 1153
             AVNLV+GDKPADVYS IAARV DIM+RDA +DPA +PN +RARLL+NQVDRKLVKQTVM
Sbjct: 723  AAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVM 782

Query: 1152 TSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSWL 973
            TSVYGVTY+GARDQIKKRLKER ++ DD E+F+A+CYAAKTTLTALG+MFE+AR IMSWL
Sbjct: 783  TSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWL 842

Query: 972  GDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKTA 793
            GDCAK IA +NHPVRWTTPLGLPVVQPYR LG                 +KVMVKRQ+TA
Sbjct: 843  GDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTA 902

Query: 792  FPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYETP 613
            FPPNFVHSLDGSHMM+TA+ACK++GL+FAGVHDSYWTHACDVDQ+N+ILREKFVELY+ P
Sbjct: 903  FPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAP 962

Query: 612  ILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            ILENLLESF++SFP L FPPLPERGDF+L EVL+SPYFFN
Sbjct: 963  ILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
            gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA
            polymerase [Zea mays]
          Length = 975

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 603/820 (73%), Positives = 696/820 (84%), Gaps = 1/820 (0%)
 Frame = -1

Query: 2949 EYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLLP 2770
            EY+ELL DMCEQKLAPNLP++KSL L WFEP RD IA EQE+     S++SH PFF++LP
Sbjct: 156  EYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRDQIATEQELVADPGSRASHGPFFSMLP 215

Query: 2769 ADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXXK 2590
            ADMMAVITMHKLMGL+MT +G GSV ++ AACQIG+AIE EVRI+RFLE          +
Sbjct: 216  ADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEME 275

Query: 2589 SEEVEGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIE 2413
            +EE  GD+ +  +Q  LRKKVT LMKKQK+RQ+  IVK QD S+PWGQ A A VGSRLI+
Sbjct: 276  NEEEAGDTNIAVEQQRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLID 335

Query: 2412 LLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDKT 2233
            L + TA++QPP SQS+D  PDIRPAFRH   T  KE +K +RRYGVI+CDP++ Q LD+T
Sbjct: 336  LFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRT 395

Query: 2232 ARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFEA 2053
            A+HMVIPY+PML+PPI WTG+DKGAHL+L SYVMRTHGARQQ+ A+K+APR+ MQ VFEA
Sbjct: 396  AKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEA 455

Query: 2052 LNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXXX 1873
            LNTLG+TKWRVNK VLS+V+RIWS+GGRLADLVDR D+P+PEKP+TEDE  ++       
Sbjct: 456  LNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVDRTDVPVPEKPDTEDETLLKNWKWHLR 515

Query: 1872 XXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1693
               K+NSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 516  AAKKKNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 575

Query: 1692 GVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLEG 1513
            GVLEFAEGRPLGKSGL WLKIHLANLYA GVDKLSYDGR+AF ENHLE+I DSADRPLEG
Sbjct: 576  GVLEFAEGRPLGKSGLRWLKIHLANLYAAGVDKLSYDGRIAFAENHLEEIFDSADRPLEG 635

Query: 1512 RRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLGA 1333
            RRW LGAEDPFQCLAVC+NL EA+RSSSP  T+SHIPVHQDGSCNGLQHYAALG+DKLGA
Sbjct: 636  RRWRLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGKDKLGA 695

Query: 1332 IAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTVM 1153
            IAVNLV+G+KPADVY+ IA RV +IM+ DA++DP+  P+A RARL+V+QVDRKLVKQTVM
Sbjct: 696  IAVNLVAGEKPADVYTGIANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLVKQTVM 755

Query: 1152 TSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSWL 973
            TSVYGVTY+GAR+QI++RLKER ++ +D+E+F ASCYAAK TLTALG+MF++AR IM+WL
Sbjct: 756  TSVYGVTYIGAREQIRRRLKERGVIPNDSELFGASCYAAKVTLTALGEMFQAARSIMNWL 815

Query: 972  GDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKTA 793
            GDCAK IA +N PVRWTTPLGLPVVQPYR LG                 +KVMVKRQKTA
Sbjct: 816  GDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKTA 875

Query: 792  FPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYETP 613
            FPPNFVHSLDGSHMM+TA+ACK+ GL FAGVHDSYWTHA DVD +N+ILREKFVELY+TP
Sbjct: 876  FPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHASDVDTMNKILREKFVELYDTP 935

Query: 612  ILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            ILENLLESFEKSFP L FPPLPERGDF++ EVL+S YFFN
Sbjct: 936  ILENLLESFEKSFPKLKFPPLPERGDFDMKEVLESTYFFN 975


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score = 1245 bits (3221), Expect = 0.0
 Identities = 597/820 (72%), Positives = 692/820 (84%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELLMDMCEQKLAPNLP++KSL L WFEP RDAIAAEQ++C +  ++ ++APFF+ L
Sbjct: 186  KEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQL 245

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PA+MMAVITMHKLMGL+MT  G GS  +V AA  IG+AIE E RIHRFLE          
Sbjct: 246  PAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSNALSG 305

Query: 2592 KSEEVEGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIE 2413
              EE  GD +M+++  LRKKV  LMKKQK+RQ+  IVK+QDD KPWGQ     VG RLI+
Sbjct: 306  DLEETPGD-MMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQ 364

Query: 2412 LLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDKT 2233
            +LM TAY+QPP  Q  D PPDIRPAF HT  T   E  K +RRYGVI+CDP++ + LDKT
Sbjct: 365  ILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKT 422

Query: 2232 ARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFEA 2053
            ARHMVIPY+PMLVPP +W G+DKG +L+L SY+MRTHGA+QQ++A+K+ P+K ++ VF+A
Sbjct: 423  ARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQA 482

Query: 2052 LNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXXX 1873
            L+TLGNTKWRVN+ VL +V RIW+SGGRLADLVDRED+PLPE P+TEDEAEIR       
Sbjct: 483  LDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVK 542

Query: 1872 XXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1693
               KEN ERHSQRCD+ELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 543  GVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 602

Query: 1692 GVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLEG 1513
            G+LEFAEGRPLG SGL WLKIHLAN+Y GGVDKLSY+GR+AF+ENHLEDI DSA+RPLEG
Sbjct: 603  GILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEG 662

Query: 1512 RRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLGA 1333
            +RWWLGAEDPFQCLA CIN+AEA+RS SP   +S++P+HQDGSCNGLQHYAALGRDKLGA
Sbjct: 663  KRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGA 722

Query: 1332 IAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTVM 1153
             AVNLV+GDKPADVYS IAARV DIM+RDA +DPA +PN +RARLL+NQVDRKLVKQTVM
Sbjct: 723  AAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVM 782

Query: 1152 TSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSWL 973
            TSVYGVTY+GARDQIKKRLKER ++ DD E+F+A+CYAAKTTLTALG+MFE+AR IMSWL
Sbjct: 783  TSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWL 842

Query: 972  GDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKTA 793
            GDCAK IA +NHPVRWTTPLGLPVVQPYR LG                 +KVMVKRQ+TA
Sbjct: 843  GDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTA 902

Query: 792  FPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYETP 613
            FPPNFVHSLDGSHMM+TA+ACK++GL+FAGVHDSYWTHACDVDQ+N+ILREKFVELY+ P
Sbjct: 903  FPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAP 962

Query: 612  ILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            ILENLLESF++SFP L FPPLPERGDF+L EVL+SPYFFN
Sbjct: 963  ILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
          Length = 862

 Score = 1244 bits (3220), Expect = 0.0
 Identities = 599/821 (72%), Positives = 697/821 (84%), Gaps = 1/821 (0%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELL DMCE KLAPNLP++KSL L WFEP RD I AEQE+  +  +++SHAP+FN+L
Sbjct: 44   KEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGTRASHAPYFNML 103

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT +G GSV ++ AACQIG+A+E EVRIH+FLE          
Sbjct: 104  PADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEV 163

Query: 2592 KSEEVEGDS-VMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLI 2416
                  GDS + ++Q  LRKKVT LMKKQKIRQ+  +VK+QD ++PWGQ A A VGSRLI
Sbjct: 164  DKVVEPGDSDIAKEQQLLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLI 223

Query: 2415 ELLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDK 2236
            EL + TA++QPP SQS D+ P+IRPAF H   T  +E K  +RRYGVI+CDP++ Q LD+
Sbjct: 224  ELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVAREQK--SRRYGVIKCDPLVRQGLDR 281

Query: 2235 TARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFE 2056
            TA+HMVIPY+PML+PPINWTG+DKGAHL+L SYVMRTHGARQQ++A+KKAP++ MQT+FE
Sbjct: 282  TAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIFE 341

Query: 2055 ALNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXX 1876
            AL+ LG+TKWRVNK VLS+V+RIWSSGGRLADLVDR D+ LPEKP+TEDEAE++      
Sbjct: 342  ALDNLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRADVSLPEKPDTEDEAELKKWRWSM 401

Query: 1875 XXXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 1696
                KENSERHSQRCDVELKLAVARKMK+E GFY+PHNLDFRGRAYPMHPYLNHLGSDLC
Sbjct: 402  RSAKKENSERHSQRCDVELKLAVARKMKEEVGFYHPHNLDFRGRAYPMHPYLNHLGSDLC 461

Query: 1695 RGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLE 1516
            RGVLEF+EGRPLG+SGL WLKIHLANLY GGVDKLSYDGR+AFTENHLEDI DSA+RPLE
Sbjct: 462  RGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYDGRIAFTENHLEDIFDSANRPLE 521

Query: 1515 GRRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLG 1336
            G+RWWL AEDPFQCLAVC++L EA+RSSSP   +SHIPVHQDGSCNGLQHYAALGRDKLG
Sbjct: 522  GKRWWLEAEDPFQCLAVCMDLNEALRSSSPETVISHIPVHQDGSCNGLQHYAALGRDKLG 581

Query: 1335 AIAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTV 1156
            A+AVNLVSG+KPADVYS IAARV +IM+RDA++DPA++ +A RARLLV+QVDR+LVKQTV
Sbjct: 582  AVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKDPAKDADAARARLLVDQVDRRLVKQTV 641

Query: 1155 MTSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSW 976
            MTSVYGVTYVGAR+QIK+RLKER ++ADD+E+F ASCYAAK TLTALG+MFE+AR IM+W
Sbjct: 642  MTSVYGVTYVGAREQIKRRLKERGVIADDSELFGASCYAAKVTLTALGEMFEAARSIMNW 701

Query: 975  LGDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKT 796
            LGDCAK IA +N PVRW TPLGLPVVQPYR LG                 +KVMVKRQ+T
Sbjct: 702  LGDCAKVIACENEPVRWKTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRT 761

Query: 795  AFPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYET 616
            AFPPNFVHSLDGSHMM+TA+ACKK GL FAGVHDSYWTHACDVD +N+ILREKFVELY+ 
Sbjct: 762  AFPPNFVHSLDGSHMMMTAVACKKQGLYFAGVHDSYWTHACDVDTMNKILREKFVELYDA 821

Query: 615  PILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            PILENLLESFE SFP L FPPLPERG+F++ +VL S YFFN
Sbjct: 822  PILENLLESFETSFPKLKFPPLPERGNFDMKDVLQSTYFFN 862


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score = 1238 bits (3204), Expect = 0.0
 Identities = 594/820 (72%), Positives = 693/820 (84%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELLMDMCEQKLAPNLP+IKSL L WFEP RDAIAAEQ++C +  ++ ++APFF+ L
Sbjct: 178  KEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQL 237

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PA+MMAVITMHKLMGL+MT  G GS  +V AA  IG+AIE E RIHRFLE          
Sbjct: 238  PAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNALDGS 297

Query: 2592 KSEEVEGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIE 2413
              EE  GD +M+++  LRKKV  LMKKQK++Q+  IVK+QDD KPWGQ     VG +LI+
Sbjct: 298  L-EETAGD-IMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQ 355

Query: 2412 LLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDKT 2233
            +L+ TAY+QPP  Q  D PPDIRPAF HT  T   E  K +RRYGVI+CDP++ + LDKT
Sbjct: 356  ILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTV--ETVKGSRRYGVIQCDPLVRKGLDKT 413

Query: 2232 ARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFEA 2053
            ARHMVIPY+PMLVPP NW+G+D+GA+L+L SY+MRTHGA+QQ++A+K+ P+K ++ VF+A
Sbjct: 414  ARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQA 473

Query: 2052 LNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXXX 1873
            L+TLGNTKWRVNK VL +++RIW+SGGRLADLVDRED+PLPE+P+TEDE EI+       
Sbjct: 474  LDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKWKWKVK 533

Query: 1872 XXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1693
               KEN ERHSQRCD+ELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 534  AAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 593

Query: 1692 GVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLEG 1513
            G+LEF+EGRPLGKSGL WLKIHLAN+Y GGVDKLSY+GR AF+ENH+EDI DSADRPLEG
Sbjct: 594  GILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSADRPLEG 653

Query: 1512 RRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLGA 1333
            RRWWLGAEDPFQCLA CIN++EA+RS SP  ++SH+P+HQDGSCNGLQHYAALGRDKLGA
Sbjct: 654  RRWWLGAEDPFQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGA 713

Query: 1332 IAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTVM 1153
             AVNLV+GDKPADVYS IAARV DIM+RDA++DPA +PN +RARLL+NQVDRKLVKQTVM
Sbjct: 714  AAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLVKQTVM 773

Query: 1152 TSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSWL 973
            TSVYGVTY+GARDQIK+RLKER  + DD E+FSA+CYAAKTTLTALG+MFE+AR IMSWL
Sbjct: 774  TSVYGVTYIGARDQIKRRLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARSIMSWL 833

Query: 972  GDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKTA 793
            GDCAK IA +N PVRWTTPLGLPVVQPYR LG                 +KVMVKRQ+TA
Sbjct: 834  GDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTA 893

Query: 792  FPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYETP 613
            FPPNFVHSLDGSHMM+TA+ CK+AGL+FAGVHDSYWTHA DVDQ+N+ILREKFVELY+ P
Sbjct: 894  FPPNFVHSLDGSHMMMTAITCKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAP 953

Query: 612  ILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            ILENLLESF++SFP L FPPLPERGDF+L EVL+SPYFFN
Sbjct: 954  ILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1238 bits (3203), Expect = 0.0
 Identities = 596/820 (72%), Positives = 692/820 (84%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEYKELL DMCEQKLAPNLP++KSL L WFEP RD IA EQE+C +  SK+++A +F  L
Sbjct: 202  KEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQL 261

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT   HG+  +V AA  IGDAIEQEVRIH FLE          
Sbjct: 262  PADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKD 321

Query: 2592 KSEEVEGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIE 2413
            K +E +G+ V ++Q  LRKKVT LMKKQK+R +  IV+RQDDSKPWGQ A+A VGSRLI+
Sbjct: 322  KQKE-DGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLID 380

Query: 2412 LLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDKT 2233
            LL+ TAY+QPP +Q A  PPDIRPAF H+  T  KE K  +RRYG+I+CD ++ + L++T
Sbjct: 381  LLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERT 440

Query: 2232 ARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFEA 2053
            ARHMVIPY+PMLVPP+ WTG+DKG HLYL SYVMRTHGARQQ++A+K+A R  +Q VFEA
Sbjct: 441  ARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEA 500

Query: 2052 LNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXXX 1873
            L+TLGNTKWR+NK VLSVV+RIW+ GGRLADLVDR+D PLPE+P+TEDEA          
Sbjct: 501  LDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVK 560

Query: 1872 XXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1693
               KEN ERHSQRCD+ELKLAVARKMKDEE F+YPHN+DFRGRAYPMHP+LNHLGSD+CR
Sbjct: 561  SVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICR 620

Query: 1692 GVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLEG 1513
            GVLEFAEGRPLG+SGL WLKIHLANL+AGGV+KLS +GR+ FTENH++DI DS+D+PLEG
Sbjct: 621  GVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEG 680

Query: 1512 RRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLGA 1333
            RRWWL AEDPFQCLAVCINL+EAVRSSSP  +VSHIPVHQDGSCNGLQHYAALGRDKLGA
Sbjct: 681  RRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGA 740

Query: 1332 IAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTVM 1153
             AVNLV+G+KPADVYS IAARV DIM+RDA+ DPAE P+A+RAR+LVNQVDRKLVKQTVM
Sbjct: 741  AAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVM 800

Query: 1152 TSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSWL 973
            TSVYGVTY+GARDQIK+RLKER  +ADD+E+F A+CYAAK TLTALG+MFE+AR IM+WL
Sbjct: 801  TSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWL 860

Query: 972  GDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKTA 793
            G+CAK IAS+N PVRWTTPLGLPVVQPYR +G                 EKVMVKRQ+TA
Sbjct: 861  GECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTA 920

Query: 792  FPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYETP 613
            FPPNF+HSLDGSHMM+TA+AC++AGL FAGVHDSYWTHACDVD+LNRILREKFVELYE P
Sbjct: 921  FPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAP 980

Query: 612  ILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            ILE LLESF+ S+P L FPPLPERGDF++ +VL+SPYFFN
Sbjct: 981  ILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 1020


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score = 1237 bits (3201), Expect = 0.0
 Identities = 596/820 (72%), Positives = 692/820 (84%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEYKELL DMCEQKLAPNLP++KSL L WFEP RD IA EQE+C +  SK+++A +   L
Sbjct: 203  KEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQL 262

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PADMMAVITMHKLMGL+MT   HG+  +V AA  IGDAIEQEVRIH FLE          
Sbjct: 263  PADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKD 322

Query: 2592 KSEEVEGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIE 2413
            K +E +G+ V ++Q  LRKKVT LMKKQK+R +  IV+RQDDSKPWGQ A+A VGSRLIE
Sbjct: 323  KQKE-DGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIE 381

Query: 2412 LLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDKT 2233
            LL+ TAY+QPP +Q A  PPDIRPAF H+  T  KE K  +RRYG+I+CD ++ + L++T
Sbjct: 382  LLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERT 441

Query: 2232 ARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFEA 2053
            ARHMVIPY+PMLVPP+ WTG+DKG HLYL SYVMRTHGARQQ++A+K+A R  +Q VFEA
Sbjct: 442  ARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEA 501

Query: 2052 LNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXXX 1873
            L+TLG+TKWR+NK VLSV++RIW+ GGRLADLVDR+D PLPE+P+TEDEA          
Sbjct: 502  LDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVK 561

Query: 1872 XXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1693
               KEN ERHSQRCD+ELKLAVARKMKDEEGF+YPHN+DFRGRAYPMHP+LNHLGSD+CR
Sbjct: 562  SVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICR 621

Query: 1692 GVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLEG 1513
            GVL FAEGRPLG+SGL WLKIHLANL+AGGV+KLS +GR+AFTENH++DI DSAD+PLEG
Sbjct: 622  GVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEG 681

Query: 1512 RRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLGA 1333
            RRWWL AEDPFQCLAVCINL+EAVRSSSP  ++SHIPVHQDGSCNGLQHYAALGRD+LGA
Sbjct: 682  RRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGA 741

Query: 1332 IAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTVM 1153
             AVNLV+G+KPADVYS IAARV DIM+RDA+ DPAE P+A+RAR LVNQVDRKLVKQTVM
Sbjct: 742  AAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVM 801

Query: 1152 TSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSWL 973
            TSVYGVTY+GARDQIK+RLKER  +ADD+E+F A+CYAAK TLTALG+MFE+AR IM+WL
Sbjct: 802  TSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWL 861

Query: 972  GDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKTA 793
            G+CAK IAS+N PVRWTTPLGLPVVQPYR +G                 EKVMVKRQ+TA
Sbjct: 862  GECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTA 921

Query: 792  FPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYETP 613
            FPPNF+HSLDGSHMM+TA+AC++AGL FAGVHDSYWTHACDVD+LNRILREKFVELYETP
Sbjct: 922  FPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYETP 981

Query: 612  ILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            ILE LLESF+ S+P L FPPLPERGDF+L +VL+SPYFFN
Sbjct: 982  ILEKLLESFQTSYPTLLFPPLPERGDFDLRDVLESPYFFN 1021


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1236 bits (3198), Expect = 0.0
 Identities = 590/820 (71%), Positives = 693/820 (84%)
 Frame = -1

Query: 2952 KEYKELLMDMCEQKLAPNLPFIKSLLLDWFEPFRDAIAAEQEICKKNNSKSSHAPFFNLL 2773
            KEY+ELLMDMCEQKLAPNLP++KSL L WFEP RDAIAAEQ++C +  ++ ++APFF+ L
Sbjct: 186  KEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQL 245

Query: 2772 PADMMAVITMHKLMGLVMTNTGHGSVHLVHAACQIGDAIEQEVRIHRFLEXXXXXXXXXX 2593
            PA+MMAVITMHKLMGL+MT  G GS  +V AA  IG+AIE E RIHRFLE          
Sbjct: 246  PAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKSNALSG 305

Query: 2592 KSEEVEGDSVMEDQTFLRKKVTTLMKKQKIRQLNMIVKRQDDSKPWGQAAQAMVGSRLIE 2413
              E+  GD +M+++  LRKKV  LMKKQK++Q+  IVK+QDD KPWGQ     VG RLI+
Sbjct: 306  DLEDTPGD-IMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQ 364

Query: 2412 LLMNTAYVQPPVSQSADAPPDIRPAFRHTRSTAGKEPKKLTRRYGVIECDPVILQRLDKT 2233
            +LM TAY+QPP  Q  D PPDIRPAF HT  T   E  K +RRYGVI+CDP++ + LDKT
Sbjct: 365  ILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKT 422

Query: 2232 ARHMVIPYVPMLVPPINWTGFDKGAHLYLRSYVMRTHGARQQKQAIKKAPRKTMQTVFEA 2053
            ARHMVIPY+PMLVPP +W G+DKGA+L+L SY+MRTHGA+QQ++A+K+ P+K ++ VF+A
Sbjct: 423  ARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQA 482

Query: 2052 LNTLGNTKWRVNKSVLSVVERIWSSGGRLADLVDREDIPLPEKPNTEDEAEIRXXXXXXX 1873
            L+TLGNTKWR+N+ VL +V+RIW+SGGRLADLVDRED+PLPE+P+ EDEA+IR       
Sbjct: 483  LDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVK 542

Query: 1872 XXXKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1693
               KEN ERHSQRCD+ELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCR
Sbjct: 543  GVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 602

Query: 1692 GVLEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRLAFTENHLEDIIDSADRPLEG 1513
            G+LEFAEGRPLGKSGL WLKIHLAN+Y GGVDKLSY+GR+AF+ENH+EDI DSA+RPLEG
Sbjct: 603  GILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEG 662

Query: 1512 RRWWLGAEDPFQCLAVCINLAEAVRSSSPNATVSHIPVHQDGSCNGLQHYAALGRDKLGA 1333
            +RWWLGAEDPFQCLA CIN+AEA+RS SP   +S++P+HQDGSCNGLQHYAALGRD LGA
Sbjct: 663  KRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGA 722

Query: 1332 IAVNLVSGDKPADVYSEIAARVRDIMQRDAEEDPAENPNALRARLLVNQVDRKLVKQTVM 1153
             AVNLV+GDKPADVYS IAARV DIM+RDA +DPA +PN +RARLL+NQVDRKLVKQTVM
Sbjct: 723  AAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVM 782

Query: 1152 TSVYGVTYVGARDQIKKRLKERNLVADDAEIFSASCYAAKTTLTALGQMFESARKIMSWL 973
            TSVYGVTY+GARDQIK+RLKER ++ DD E+F+A+CYAAKTTLTALG+MFE+AR IMSWL
Sbjct: 783  TSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWL 842

Query: 972  GDCAKTIASQNHPVRWTTPLGLPVVQPYRALGXXXXXXXXXXXXXXXXXEKVMVKRQKTA 793
            GDCAK IA +NHPVRWTTPLGLPVVQPYR LG                 +KVMVKRQ+TA
Sbjct: 843  GDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTA 902

Query: 792  FPPNFVHSLDGSHMMLTALACKKAGLAFAGVHDSYWTHACDVDQLNRILREKFVELYETP 613
            FPPNFVHSLDGSHMM+TA+ACK++GL+FAGVHDSYWTHA DVDQ+N+ILREKFVELY+ P
Sbjct: 903  FPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAP 962

Query: 612  ILENLLESFEKSFPGLCFPPLPERGDFNLNEVLDSPYFFN 493
            ILENLLESF++SFP L FPPLPERGDF+L EVL+SPYFFN
Sbjct: 963  ILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002