BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00005316
         (1721 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   582   e-163
gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]             574   e-161
gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus pe...   570   e-160
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   569   e-159
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   567   e-159
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   563   e-158
ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [A...   560   e-157
ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Popu...   557   e-156
ref|XP_004307835.1| PREDICTED: RNA polymerase sigma factor sigA-...   556   e-155
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   553   e-155
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   553   e-155
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      550   e-154
gb|ESW03465.1| hypothetical protein PHAVU_011G016400g [Phaseolus...   547   e-153
ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr...   546   e-153
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-...   545   e-152
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-...   544   e-152
gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thali...   543   e-152
ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha...   543   e-151
dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   541   e-151
gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]             541   e-151

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  582 bits (1499), Expect = e-163
 Identities = 312/508 (61%), Positives = 397/508 (78%), Gaps = 13/508 (2%)
 Frame = -2

Query: 1567 MATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGPN 1388
            MATAAVIGLS GKRL +S+F  +DL EKL  A ++ +  + ++STK  IV++KSS++GP+
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 1387 VPPT-RYIRSIKAMKEQANTLT-PSTSATW--------SESPDXXXXXXXXXXLQKSMLE 1238
             P + R  +SIKA+KE  +T + PST+AT          ES D          LQKSMLE
Sbjct: 61   FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120

Query: 1237 KQLELPFMDTTPNYVP-RVSQIPV-ISRSGISARERRIACRRKCFARNNDTEPTST-KPL 1067
            KQ  L F  T  +  P R SQ  + ++ SG+SAR+RRI  RRK  +++  T   +  K L
Sbjct: 121  KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180

Query: 1066 HFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEPT 887
              +VSPEL+++ + GYV+G V+E LL+HAEVV LS+ IKAG+ LE+H+S+LK +LG +P+
Sbjct: 181  KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240

Query: 886  DKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGLI 707
            D+Q+A+SL+IS  ELQ +    SLAREKLAMSNVRLVMSIAQ+YDNMG  MADL Q GLI
Sbjct: 241  DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 706  GLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVRL 527
            GLLRGIEKFDSSKGF+ISTYVYWWIRQGV+RAL +NS+TLRLP HLHERL  I++AK+RL
Sbjct: 301  GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360

Query: 526  EEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADTK 347
            EEKG+ PSID+IAESLN+SQKKVRNATEAV+KV SLDR+AFPSLNG+PGET HSY+AD  
Sbjct: 361  EEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNC 420

Query: 346  LDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRER 167
            L+N PWHG ++W+LKDEVNKL+N TL +RE++IIRLY+G+D+E  TWE+I K++GLSRER
Sbjct: 421  LENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRER 480

Query: 166  VRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            VRQVGLVA+EKLKH AR+++LEAML+ H
Sbjct: 481  VRQVGLVALEKLKHAARKKKLEAMLVKH 508


>gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]
          Length = 508

 Score =  574 bits (1480), Expect = e-161
 Identities = 307/508 (60%), Positives = 383/508 (75%), Gaps = 12/508 (2%)
 Frame = -2

Query: 1570 VMATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGP 1391
            +MATAAVIGL+TGKRL +SSF  +D+ EKL  A DY       SSTK  IV++KSS+   
Sbjct: 1    MMATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTSSTKSLIVAKKSSNCSQ 60

Query: 1390 NVPPT-RYIRSIKAMKEQ---------ANTLTPSTSATWSESPDXXXXXXXXXXLQKSML 1241
            ++P + R  +SIKA+KE          A  L   ++    ES D          LQKSML
Sbjct: 61   SLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSML 120

Query: 1240 EKQLELPFMDTTPNYVP--RVSQIPVISRSGISARERRIACRRKCFARNNDTEPTSTKPL 1067
            EKQ  L F  T     P  ++ +   ++ SG+SAR+RR   +RK   +N      + K L
Sbjct: 121  EKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILIQNKSIIQPNAKQL 180

Query: 1066 HFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEPT 887
               +SPEL++S + GYV+G V++ LL+HAEVV LSKKIKAG+ LEEHR +LK +LG EP+
Sbjct: 181  RSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERLGCEPS 240

Query: 886  DKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGLI 707
            D+QLA+SL+IS  EL+ ++ E SLAREKLAMSNVRLVMSIAQ+YDNMG  M+DL Q GLI
Sbjct: 241  DEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGLI 300

Query: 706  GLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVRL 527
            GLLRGIEKFDSSKG+KISTYVYWWIRQGV+RAL +NS+TLRLP HLHERL  I++AK+RL
Sbjct: 301  GLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIRL 360

Query: 526  EEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADTK 347
            EEKGI P+ID+IAESLNMSQKKVRNATEAV+KV SLDR AFPSLNG+PGET HSY+AD  
Sbjct: 361  EEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADNH 420

Query: 346  LDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRER 167
            ++NIPWHG +EW+LKDEVN+L+  TL +RER+IIRLY+G+D E  TWE+I K++GLSRER
Sbjct: 421  VENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWEDISKRIGLSRER 480

Query: 166  VRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            VRQVGLVA+EKLKH AR++++EAML+ H
Sbjct: 481  VRQVGLVALEKLKHAARKKKMEAMLVKH 508


>gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  570 bits (1470), Expect = e-160
 Identities = 310/515 (60%), Positives = 390/515 (75%), Gaps = 19/515 (3%)
 Frame = -2

Query: 1570 VMATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYN-MLPFSVSSTKCTIVSQKSSHFG 1394
            +MATAAVIGLSTGKRL  SSF  +D+ EKLF   D++  L    SSTK  + ++K S+  
Sbjct: 1    MMATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCS 60

Query: 1393 PNVPPT-RYIRSIKAMKEQANTLTPSTSAT--W--------SESPDXXXXXXXXXXLQKS 1247
               P + R  +SI+A+KE   T +  +SAT  W         ES D          LQKS
Sbjct: 61   SRFPSSNRPQQSIRALKEHVQTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKS 120

Query: 1246 MLEKQLELPF-----MDTTPNYVPRVSQIPVISRSGISARERRI-ACRRKCFARNNDT-E 1088
            MLEKQ  L F      D+T     +  +IPV   SG+SAR+RR+ + +RK F ++     
Sbjct: 121  MLEKQWNLSFEKKVLRDSTSKTTDK--KIPVTC-SGVSARQRRMTSTKRKTFNKSTCVMH 177

Query: 1087 PTSTKPLHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKV 908
            P++ KPL   VSPEL+++ V GYV+G ++E+LLTH EVV LSKKIK G+ +EEH+S+LK 
Sbjct: 178  PSTNKPLRAIVSPELLQNHVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLKE 237

Query: 907  KLGVEPTDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMAD 728
            +LG EP+D+QLA+SLRIS  +LQ ++ E  LAREKLAMSNVRLVMSIAQ+YDNMG  MAD
Sbjct: 238  RLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMAD 297

Query: 727  LTQAGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSI 548
            L Q GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGV+RAL +NS+TLRLP HLHERL  I
Sbjct: 298  LIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLI 357

Query: 547  KHAKVRLEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLH 368
            ++AK+RLEEKGI PSID+IAESLNMS+KKVRNATEA++KV SLDR AFPSLNG+PGET H
Sbjct: 358  RNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHH 417

Query: 367  SYVADTKLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQ 188
            SY+AD +L+NIPWHG + W+LK+EV+KL+N  L +RE++II+LY+G+++EC TWE+I K+
Sbjct: 418  SYIADNRLENIPWHGVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWEDISKR 477

Query: 187  LGLSRERVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            +GLSRERVRQVGLVA+EKLKH AR+R +EAML+ H
Sbjct: 478  IGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 512


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  569 bits (1466), Expect = e-159
 Identities = 301/509 (59%), Positives = 380/509 (74%), Gaps = 13/509 (2%)
 Frame = -2

Query: 1570 VMATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGP 1391
            +MATAAVIGLS GKRL +SSF  +D++EK     D       V STK  + ++KSS++ P
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 1390 NVPPT-RYIRSIKAMKEQANTLTPSTSATWSESP--------DXXXXXXXXXXLQKSMLE 1238
            + P + R  + IKA+KE  +T   ST+  W+E P        +          LQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1237 KQLELPFMDTTPNYVPRVS---QIPVISRSGISARERRIACRRKCFARNNDT-EPTSTKP 1070
            KQ  L F  T     P      ++PV   SG+SAR+RR+  ++K  ++N    +   +K 
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTC-SGVSARQRRLNSKKKILSQNKSVPQQNGSKQ 179

Query: 1069 LHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEP 890
            L   +SPELI++ + GYV+G V+E LLTHAEVV LSKKIK G+ L++H+ +LK +LG EP
Sbjct: 180  LRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239

Query: 889  TDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGL 710
            + +QLA+SLRIS  ELQ  + E SLAREKL MSNVRLVMSIAQ+YDNMG  MADL Q GL
Sbjct: 240  SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 299

Query: 709  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVR 530
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGV+RAL +NS+TLRLP HLHERL  I++AK+R
Sbjct: 300  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 359

Query: 529  LEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADT 350
            LEEKG+ PS+D+IAE LNMSQKKVRNATEA+ KV SLDR+AFPSLNG+PGET HSY+AD 
Sbjct: 360  LEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADN 419

Query: 349  KLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRE 170
            +++N PWHG ++W+LKDEVNKL+  TL +RER+IIRLY+G+D EC TWE+I K++GLSRE
Sbjct: 420  RVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRE 479

Query: 169  RVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            RVRQVGLVA+EKLKH AR++++EAML+ H
Sbjct: 480  RVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  567 bits (1462), Expect = e-159
 Identities = 300/509 (58%), Positives = 380/509 (74%), Gaps = 13/509 (2%)
 Frame = -2

Query: 1570 VMATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGP 1391
            +MATAAVIGLS GKRL +SSF  +D++EK     D       V STK  + ++KSS++ P
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 1390 NVPPT-RYIRSIKAMKEQANTLTPSTSATWSESP--------DXXXXXXXXXXLQKSMLE 1238
            + P + R  + IKA+KE  +T   ST+  W+E P        +          LQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1237 KQLELPFMDTTPNYVPRVS---QIPVISRSGISARERRIACRRKCFARNNDT-EPTSTKP 1070
            KQ  L F  T     P      ++PV   SG+SAR+RR+  ++K  ++N    +   +K 
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTC-SGVSARQRRLNSKKKILSQNKSVLQQNGSKQ 179

Query: 1069 LHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEP 890
            L   +SPELI++ + GYV+G V+E LLTHAEVV LSKKIK G+ L++H+ +LK +LG EP
Sbjct: 180  LRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEP 239

Query: 889  TDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGL 710
            + +QLA+SLRIS  ELQ  + E SLAREKL MSNVRLVMSIAQ+YDNMG  MADL Q GL
Sbjct: 240  SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLIQGGL 299

Query: 709  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVR 530
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGV+RAL +NS+TLRLP HLHERL  I++AK+R
Sbjct: 300  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 359

Query: 529  LEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADT 350
            LEEKG+ P++D+IAE LNMSQKKVRNATEA+ KV SLDR+AFPSLNG+PGET HSY+AD 
Sbjct: 360  LEEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADN 419

Query: 349  KLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRE 170
            +++N PWHG ++W+LKDEVNKL+  TL +RER+IIRLY+G+D EC TWE+I K++GLSRE
Sbjct: 420  RVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRE 479

Query: 169  RVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            RVRQVGLVA+EKLKH AR++++EAML+ H
Sbjct: 480  RVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
            1 family protein [Populus trichocarpa]
          Length = 509

 Score =  563 bits (1452), Expect = e-158
 Identities = 303/510 (59%), Positives = 385/510 (75%), Gaps = 14/510 (2%)
 Frame = -2

Query: 1570 VMATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGP 1391
            +MATAAVIGLS+GKRL +SSF  +DL EKL    D+ +  +  ++TK  IV++KSS++GP
Sbjct: 1    MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60

Query: 1390 NVPPT-RYIRSIKAMKEQANTLTPSTS-ATW--------SESPDXXXXXXXXXXLQKSML 1241
            + P + R   SIKA+KE  +T + S++ ATW         ES            LQKSML
Sbjct: 61   SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 1240 EKQLELPFMDTTPN---YVPRVSQIPVISRSGISARERRIACRRKCFARNNDTEPTST-K 1073
            EKQ  L F  T  +         +IPV   SG+SAR+RR+  RRK   ++     +S  K
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTC-SGVSARQRRVNNRRKNQNQSKFMSQSSDFK 179

Query: 1072 PLHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVE 893
             L    SP+L+++ + GYV+G V++ +L H EVV LS+ I+AG+  E+H+S+LK +LG E
Sbjct: 180  FLRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCE 239

Query: 892  PTDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAG 713
            P+D+Q+A SLRIS  +LQ ++ + SLAREKLAMSNVRLVMSIAQKYDNMG  MADL Q G
Sbjct: 240  PSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGG 299

Query: 712  LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKV 533
            LIGLLRGIEKFDSSKGFKISTYVYWWIRQGV+RAL  NS+TLRLP HLHERL  I++AK+
Sbjct: 300  LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKI 359

Query: 532  RLEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVAD 353
            RLEEKG+ PSID+IAESLNMSQ+KVRNATEA++KV SLDR+AFPSLNG+PGET HSY+AD
Sbjct: 360  RLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 419

Query: 352  TKLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSR 173
             + +N PWHG +EW+LK+EVNKL+++TL +RE++IIRLYHG+D EC TWE+I K++GLSR
Sbjct: 420  NRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSR 479

Query: 172  ERVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            ERVRQVGLVA+EKLKH AR+R  EAML+ H
Sbjct: 480  ERVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [Amborella trichopoda]
            gi|548832002|gb|ERM94804.1| hypothetical protein
            AMTR_s00011p00266100 [Amborella trichopoda]
          Length = 497

 Score =  560 bits (1442), Expect = e-157
 Identities = 300/499 (60%), Positives = 376/499 (75%), Gaps = 4/499 (0%)
 Frame = -2

Query: 1567 MATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGPN 1388
            MATAAVIG+STGKRL  SSF  +D+ E++ P  D+    F   S K  IVS+KS  FGPN
Sbjct: 1    MATAAVIGISTGKRLLRSSFLASDI-ERVIPIYDFGATQFPAVSHKSFIVSKKSPGFGPN 59

Query: 1387 VPPTRYIRSIKAMKEQANTLTPSTSATWSES-PDXXXXXXXXXXLQKSMLEKQLELPFMD 1211
             P  R  + I A+KE  N  + S+S++ +E+ PD          LQKSMLEKQ  L F  
Sbjct: 60   SPSNRQTQYINAIKEHVNAPSSSSSSSTTEANPDFESSLEALILLQKSMLEKQWNLSFDQ 119

Query: 1210 ---TTPNYVPRVSQIPVISRSGISARERRIACRRKCFARNNDTEPTSTKPLHFSVSPELI 1040
               +T        ++ VIS SG SAR+RR + RR    R         K     VSPEL+
Sbjct: 120  AGTSTDLCEESCKKLGVIS-SGASARQRRNSLRRPLNQRAGTVLVRRKKQATPIVSPELL 178

Query: 1039 KSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEPTDKQLASSLR 860
            +    GYV+G  N++LL+HAEVV+LS KI+AG+ LEEH+S+LK KLG +P+D+ LASSL+
Sbjct: 179  QGHFRGYVKGISNDSLLSHAEVVHLSWKIRAGLSLEEHKSRLKEKLGFDPSDELLASSLK 238

Query: 859  ISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGLIGLLRGIEKF 680
            IS  EL  ++ E SLA+EKLAMSN+RLVMSIAQKYDNMG  MADL Q GLIGLLRGIEKF
Sbjct: 239  ISRSELHSKLIECSLAKEKLAMSNIRLVMSIAQKYDNMGIEMADLIQGGLIGLLRGIEKF 298

Query: 679  DSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVRLEEKGIAPSI 500
            DSSKGFKISTYVYWWIRQGV+RA+ +NS+TLRLP HLHERL+ I++AK+RL+E+G+ PSI
Sbjct: 299  DSSKGFKISTYVYWWIRQGVSRAMVENSRTLRLPTHLHERLSLIRNAKIRLKEQGLTPSI 358

Query: 499  DKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADTKLDNIPWHGF 320
             +IA+SLNMS+KKV+NATEA+ KV SLDR+AFP+LNG+PGETLHSY+AD  L N PWHG 
Sbjct: 359  HRIAKSLNMSKKKVKNATEAMTKVFSLDREAFPTLNGLPGETLHSYIADNNLMNNPWHGV 418

Query: 319  NEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRERVRQVGLVAM 140
            +EW LK EVNKL+++TL++RE+DIIRLY+G+D ECHTWE+I +++GLSRERVRQVGLVA+
Sbjct: 419  DEWLLKAEVNKLISSTLAEREQDIIRLYYGLDKECHTWEDISRKIGLSRERVRQVGLVAL 478

Query: 139  EKLKHVARRRRLEAMLMNH 83
            EKLK+ AR +RLEAML+ H
Sbjct: 479  EKLKNAARNKRLEAMLVKH 497


>ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Populus trichocarpa]
            gi|550325184|gb|EEE95160.2| hypothetical protein
            POPTR_0013s07290g [Populus trichocarpa]
          Length = 499

 Score =  557 bits (1435), Expect = e-156
 Identities = 297/508 (58%), Positives = 386/508 (75%), Gaps = 12/508 (2%)
 Frame = -2

Query: 1570 VMATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGP 1391
            +MATA+ IGL+TGKRL +SSF  +DL EKL    D+ +  + +++TK  IV++KSS +GP
Sbjct: 1    MMATASFIGLTTGKRLLSSSFYFSDLTEKLSNVNDHGVAHYQITTTKSVIVAKKSSKYGP 60

Query: 1390 NVPPT-RYIRSIKAMKEQANTLTPS-TSATW--------SESPDXXXXXXXXXXLQKSML 1241
            + P + R   S KA+KE  +T + S T ATW         ES            LQKSML
Sbjct: 61   SFPSSYRNPHSNKALKELIDTASASSTVATWFKTLDDFEEESSVLDYSVEALILLQKSML 120

Query: 1240 EKQLELPF--MDTTPNYVPRVSQIPVISRSGISARERRIACRRKCFARNNDTEPTSTKPL 1067
            EKQ  L F  ++++ + + + ++   ++ SG+SAR+RR+  +RK     N ++  S    
Sbjct: 121  EKQWNLSFESINSSDSKIKKSNKKIPVTCSGVSARQRRLNNKRK---NQNQSKFMS---- 173

Query: 1066 HFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEPT 887
               +SP+L+ + + GYV+G V++ +L H EVV LS+ I+AG+ LE+H+S LK +LG EP+
Sbjct: 174  --DISPDLLLNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSLEDHKSSLKERLGCEPS 231

Query: 886  DKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGLI 707
            D+QLA SLRIS  +LQ ++ + SLAREKLAMSNVRLVMSIAQK DNMG  MADL QAGLI
Sbjct: 232  DEQLADSLRISRADLQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMGAEMADLVQAGLI 291

Query: 706  GLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVRL 527
            GLLRGIEKFDSSKGFKISTYVYWWIRQGV+RAL +N +TLRLP HLHERL  I++AK+RL
Sbjct: 292  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENPRTLRLPNHLHERLGLIRNAKIRL 351

Query: 526  EEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADTK 347
            EEKG+ PSID+IAESLNMSQ+KVRNATEA++KV SLDR+AFPSLNG+PGET HSY+AD +
Sbjct: 352  EEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 411

Query: 346  LDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRER 167
            L+N PWHG +EW+LK+EVNKL+++ L +RER+IIRLYHG+D EC TWE+I K++GLSRER
Sbjct: 412  LENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLYHGLDKECLTWEDISKRMGLSRER 471

Query: 166  VRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            VRQVGLVA+EKLKH AR+ +LEAML+ H
Sbjct: 472  VRQVGLVALEKLKHAARKGKLEAMLVKH 499


>ref|XP_004307835.1| PREDICTED: RNA polymerase sigma factor sigA-like [Fragaria vesca
            subsp. vesca]
          Length = 511

 Score =  556 bits (1432), Expect = e-155
 Identities = 301/512 (58%), Positives = 385/512 (75%), Gaps = 17/512 (3%)
 Frame = -2

Query: 1567 MATAA-VIGLS-TGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSS--H 1400
            MATAA V+GLS TGKRL +SS   +D+ +KLF   D+  +   +SSTK  + ++KSS  +
Sbjct: 1    MATAAAVVGLSSTGKRLLSSSLSYSDITDKLFYLNDHGFVNCQLSSTKNVVTARKSSSKY 60

Query: 1399 FGPNVPPTR--YIRSIKAMKEQANTLTPSTSATWS----------ESPDXXXXXXXXXXL 1256
                 P +   + +SI+A++E A+T +  +S T            ES D          L
Sbjct: 61   SNSRFPSSNRHHEQSIRALQEHADTASAPSSTTHQLLEEYTDLEEESSDLEYSVEALLLL 120

Query: 1255 QKSMLEKQLELPFMDTTPNYVPRVSQIPVISRSGISARERRIACRRKCFARN-NDTEPTS 1079
            QKS+LEKQ  L F           ++IPV   SG+SAR+RR++ +RK F++N ++ +P++
Sbjct: 121  QKSLLEKQWNLSFEKKLSTRKITDNKIPVTC-SGVSARQRRMSTKRKAFSKNTSELQPST 179

Query: 1078 TKPLHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLG 899
             K    ++SP L+++  SGYV+G  +++LLTH EVV LSKKIK G+ +EEH+S+LK KLG
Sbjct: 180  NKYCRATISPSLLQNRTSGYVKGVTSDHLLTHTEVVRLSKKIKIGLSVEEHKSRLKEKLG 239

Query: 898  VEPTDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQ 719
             EP+ +QLA+SLRIS  ELQ ++ + SLAREKL MSNVRLVMSIAQ+YDNMG  MADL Q
Sbjct: 240  CEPSVEQLATSLRISRTELQSKLIQCSLAREKLTMSNVRLVMSIAQRYDNMGAEMADLIQ 299

Query: 718  AGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHA 539
             GLIGLLRGIEKFD+SKGFKISTYVYWWIRQGV+RAL +NS+TLRLP HLHERL  I++A
Sbjct: 300  GGLIGLLRGIEKFDASKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 359

Query: 538  KVRLEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYV 359
            KVRLEEKGI PSID IAESLNMS+KKVRNATEA++KV SLDR AFPSLNG+PGET HSY+
Sbjct: 360  KVRLEEKGITPSIDSIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYI 419

Query: 358  ADTKLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGL 179
            AD + +NIPWHG +E +LKDEVNKL+N  L +RER+IIRLY+G+D+EC TWE+I K++GL
Sbjct: 420  ADNRHENIPWHGLDELALKDEVNKLINLMLGEREREIIRLYYGLDNECLTWEDISKRIGL 479

Query: 178  SRERVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            SRERVRQVGLVA+EKLKH AR++ LEAML+ H
Sbjct: 480  SRERVRQVGLVALEKLKHGARKKELEAMLVQH 511


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
            gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
            polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  553 bits (1426), Expect = e-155
 Identities = 294/509 (57%), Positives = 377/509 (74%), Gaps = 13/509 (2%)
 Frame = -2

Query: 1570 VMATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGP 1391
            +MATAA+IGL   KRL  SS   +D  EK+  A DY +    VSS+K  ++++ S++F P
Sbjct: 1    MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60

Query: 1390 NVPPTRYI--RSIKAMKEQANTLTPSTSATW-------SESPDXXXXXXXXXXLQKSMLE 1238
              P +     + IKA+KE   T +   +  W        E  +          LQKSMLE
Sbjct: 61   RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWHNTTSWEDEETELKYTVEALLLLQKSMLE 120

Query: 1237 KQLELPFMDTTPNYVPR---VSQIPVISRSGISARERRIACRRKCFARNND-TEPTSTKP 1070
            KQ  L F  T     P+   + ++PV   SG+SAR+RR++ +RK  +++    +P  +K 
Sbjct: 121  KQWSLSFEQTVSTDTPKEKTLKKVPVTC-SGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 179

Query: 1069 LHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEP 890
            L  ++SPEL+++ + GYV+G ++E LL+HAEVV LSKKIK G+ LEE +++LK +LG EP
Sbjct: 180  LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEP 239

Query: 889  TDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGL 710
            ++ QLA SL+IS  EL+ R+ ESSLAREKLAMSNVRLVMSIAQ+YDNMG  MADL Q GL
Sbjct: 240  SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 299

Query: 709  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVR 530
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGV+RAL +NS+TLRLP HLHERL  I++AKV+
Sbjct: 300  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 359

Query: 529  LEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADT 350
            L+EKGI PS+D+IAESLNMS+KKV+NATEA++KV SLDR+AFPSLNG+PGET HSY+AD 
Sbjct: 360  LQEKGITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 419

Query: 349  KLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRE 170
             L+N PWHG + W LK EVN+L+N TL  RER+IIRLYHG+D+EC TWEEI K++GLSRE
Sbjct: 420  CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 479

Query: 169  RVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            RVRQVGLVA+EKLK  A+ R++EAML+ H
Sbjct: 480  RVRQVGLVALEKLKKAAKTRKMEAMLLKH 508


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  553 bits (1426), Expect = e-155
 Identities = 294/509 (57%), Positives = 382/509 (75%), Gaps = 14/509 (2%)
 Frame = -2

Query: 1567 MATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGPN 1388
            MATAAVIGLS GKRL +SS+  +D+ EKL   +D+    + +  TK  IV++KSS++ P 
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60

Query: 1387 VPPT-RYIRSIKAMKEQANTLTPSTSATWS----------ESPDXXXXXXXXXXLQKSML 1241
             P + +  +SIKA+KE  +   P+ +  W           ES +          LQKSML
Sbjct: 61   FPASNQQNQSIKALKEHVDD-APTIADPWFQSYNSNDLEVESSEMGYSVEALLLLQKSML 119

Query: 1240 EKQLELPF---MDTTPNYVPRVSQIPVISRSGISARERRIACRRKCFARNNDTEPTSTKP 1070
            EKQ  L F   + T  +   +  +   ++ SG+SAR+RR+  +RK   +        +K 
Sbjct: 120  EKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRKTAIKTCGAMQLKSK- 178

Query: 1069 LHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEP 890
                +SPEL++  + GYV+G V+E LL+HAEVVNLS+KIK G+ LEEH+S+LK KLG EP
Sbjct: 179  ----ISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEP 234

Query: 889  TDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGL 710
            +D Q+A+SL+IS  EL+ R+ E SLAREKLAMSNVRLVMSIAQKYDN+G  M DL Q GL
Sbjct: 235  SDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGL 294

Query: 709  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVR 530
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGV+RAL +NS+TLRLP HLHERL+ I++AK R
Sbjct: 295  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFR 354

Query: 529  LEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADT 350
            LEE+GI P+ID+IA+ LNMSQKKVRNATEA++K++SLDR+AFPSLNG+ GET HSY+AD 
Sbjct: 355  LEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGETHHSYIADN 414

Query: 349  KLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRE 170
            +++NIPW+G +EW+LKDEVN+L+N TL +RER+IIRLY+G++ EC TWE+I K++GLSRE
Sbjct: 415  RVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGLEKECLTWEDISKRIGLSRE 474

Query: 169  RVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            RVRQVGLVA+EKLKH AR+R++EAML+ H
Sbjct: 475  RVRQVGLVALEKLKHAARKRQMEAMLLKH 503


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  550 bits (1418), Expect = e-154
 Identities = 295/507 (58%), Positives = 379/507 (74%), Gaps = 13/507 (2%)
 Frame = -2

Query: 1570 VMATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGP 1391
            +M+TAAVIGLS GKRL +SSF  +DL EKL   +D+++    V S K  I ++KSS + P
Sbjct: 1    MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60

Query: 1390 NVPPTRYIRSIKAMKEQAN-TLTPSTSATW--------SESPDXXXXXXXXXXLQKSMLE 1238
            +   +R  +S K++KE  + T  PS   +W        +ES D          LQKSMLE
Sbjct: 61   SCVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLE 120

Query: 1237 KQLELPFMDT---TPNYVPRVSQIPVISRSGISARERRIACRRKCFARNNDTEPTST-KP 1070
            KQ  L    T   +P +  +  ++  I+ SG SAR RR+  R++   R++   PTS  KP
Sbjct: 121  KQWNLSLEQTLTASPQHEKKSKKMH-ITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKP 179

Query: 1069 LHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEP 890
            L   + PEL+++ + GYV+G V+E LLTHAEV+ LSKKI+ G+ LEE +S+LK +LG EP
Sbjct: 180  LRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEP 239

Query: 889  TDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGL 710
            +D QLA SL++S  +LQ  + E SLARE+LAMSNVRLVMSIAQ+YDN+G  MADL Q GL
Sbjct: 240  SDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGL 299

Query: 709  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVR 530
            IGLLRGIEKFD SKG+KISTYVYWWIRQGV+RAL +NS+TLRLP +LHERL+ I++AK R
Sbjct: 300  IGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKAR 359

Query: 529  LEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADT 350
            LEEKGI PS++ IA SLNMSQKKVRNATEA +K+ SLDR+AFPSLNG+PGETLHSY+AD 
Sbjct: 360  LEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADN 419

Query: 349  KLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRE 170
             L+N PWHG + W+LKDEVN L+++TL  RER+IIRLY+G+D+EC TWE+I K++GLSRE
Sbjct: 420  HLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGLSRE 479

Query: 169  RVRQVGLVAMEKLKHVARRRRLEAMLM 89
            RVRQVGLVA+EKLKH AR+R+L+AML+
Sbjct: 480  RVRQVGLVALEKLKHAARKRQLDAMLI 506


>gb|ESW03465.1| hypothetical protein PHAVU_011G016400g [Phaseolus vulgaris]
          Length = 504

 Score =  547 bits (1409), Expect = e-153
 Identities = 285/509 (55%), Positives = 377/509 (74%), Gaps = 14/509 (2%)
 Frame = -2

Query: 1567 MATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGPN 1388
            MA+AAVIGLS GKRL +SS+  +D+ EKL   +D+    + + STK  IV++KSS++ P 
Sbjct: 1    MASAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVSTKSVIVAKKSSNYTPT 60

Query: 1387 VP-PTRYIRSIKAMKEQANTLTPSTSATWS---------ESPDXXXXXXXXXXLQKSMLE 1238
             P P R  +SIK +KE  +       A +          ES +          LQKSMLE
Sbjct: 61   FPAPNRQNQSIKVLKEIVDDAATVADAWFQSLSSNDLEVESSEMGYSVEALLLLQKSMLE 120

Query: 1237 KQLELPF----MDTTPNYVPRVSQIPVISRSGISARERRIACRRKCFARNNDTEPTSTKP 1070
            KQ  L F    +    +      ++  ++ SG+SAR+RR+  +RK   +        +K 
Sbjct: 121  KQWSLSFEGEGVTEHSSKEKNCRKVAAVTCSGVSARQRRMNAKRKTAVKTGGAVQLKSK- 179

Query: 1069 LHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEP 890
                +SPEL+++ + GYV+G V+E LL+HA+VV+LS+KIK G+ LEEH+S++K +LG EP
Sbjct: 180  ----ISPELLQNRLKGYVKGVVSEELLSHAQVVSLSEKIKVGLSLEEHKSRMKERLGCEP 235

Query: 889  TDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGL 710
            +D ++A+SL+IS  EL++++ E SLAREKLAMSNVRLVMSIAQ+Y+N GT M DL Q GL
Sbjct: 236  SDDEIATSLKISSTELREKMLECSLAREKLAMSNVRLVMSIAQRYENAGTEMGDLVQGGL 295

Query: 709  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVR 530
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGV++AL +NS+TLRLP HLHERL+ I++AK+R
Sbjct: 296  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALIENSRTLRLPAHLHERLSLIRNAKLR 355

Query: 529  LEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADT 350
            LEE+GI P+ID+IA+ LNMSQKKVRNATEA++K +SLDR+AFPSLNG+ G+T HSY+AD 
Sbjct: 356  LEERGITPTIDRIAQHLNMSQKKVRNATEAISKTISLDREAFPSLNGLRGDTHHSYIADN 415

Query: 349  KLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRE 170
            +++NIPW G +EW+LKDEVN+L+N TL +RER+IIRLY+G+  EC TWE+I K++GLSRE
Sbjct: 416  RVENIPWEGVDEWALKDEVNRLINVTLKEREREIIRLYYGLGKECLTWEDISKRMGLSRE 475

Query: 169  RVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            RVRQVGLVA+EKLKH AR R LEAML+ H
Sbjct: 476  RVRQVGLVALEKLKHGARNRELEAMLLKH 504


>ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum]
            gi|557097090|gb|ESQ37598.1| hypothetical protein
            EUTSA_v10002486mg [Eutrema salsugineum]
          Length = 519

 Score =  546 bits (1408), Expect = e-153
 Identities = 295/520 (56%), Positives = 384/520 (73%), Gaps = 24/520 (4%)
 Frame = -2

Query: 1570 VMATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQK----SS 1403
            +MATAAVIGL+ GKRL +SSF  +D+ EK     D+    + ++ST+  I ++K    SS
Sbjct: 1    MMATAAVIGLNAGKRLLSSSFYYSDVTEKFLSVNDHCSSQYHIASTRSGITAKKTPSSSS 60

Query: 1402 HFGPNVPPT-RYIRSIKAMKEQANTLTPSTSATW------------SESPDXXXXXXXXX 1262
            ++ P++P + R+ +S KA+KE  + +  S    W            S   D         
Sbjct: 61   NYSPSLPSSSRHTQSAKALKETVDVVASSVQP-WLPPGSDKEMEGESYEDDLGHSVEALL 119

Query: 1261 XLQKSMLEKQLELPFMDTTPNYVPRVSQIP----VISRSGISARERRIACRRKCFARNND 1094
             LQKSMLEKQ  L F     +  P   ++      ++ SGISAR+RRI  ++K    +  
Sbjct: 120  LLQKSMLEKQWNLSFEKAATSESPSKKRMTRKKNPVTCSGISARQRRIGAKKKTNMSHVK 179

Query: 1093 --TEPTSTKPLHFSVSPELIKSG-VSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHR 923
              +E +S K +   ++ EL ++  V GYVRG V+E++L+HAEVV LSKKIK+G+RL++H+
Sbjct: 180  VVSEVSSGKQVKSVINSELFQNNRVKGYVRGVVSEDVLSHAEVVRLSKKIKSGLRLDDHK 239

Query: 922  SKLKVKLGVEPTDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMG 743
            S+LK +LG EP+D+QLA SL+IS  ELQ  + E  LAREKLAMSNVRLVMSIAQ+YDNMG
Sbjct: 240  SRLKDRLGCEPSDEQLAISLKISRGELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMG 299

Query: 742  TSMADLTQAGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHE 563
              M+DL Q GLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGV+RAL  NS+TLRLP HLHE
Sbjct: 300  AEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHE 359

Query: 562  RLTSIKHAKVRLEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIP 383
            RL  I++AK+RL+EKGI PSID+IAESLNMSQKKVRNATEAV+K+ SLDR AFPSLNG+P
Sbjct: 360  RLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLP 419

Query: 382  GETLHSYVADTKLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWE 203
            GET HSY+AD +L+N PWHG++EW+LKDEV+KL++ TL +RER+IIRLY+G+D EC TWE
Sbjct: 420  GETHHSYIADNRLENNPWHGYDEWALKDEVSKLISATLGEREREIIRLYYGLDKECLTWE 479

Query: 202  EIGKQLGLSRERVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            +I K++GLSRERVRQVGLVA+EKLKH AR+R++EAM++ +
Sbjct: 480  DISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 519


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Glycine
            max] gi|571478813|ref|XP_006587676.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Glycine
            max]
          Length = 503

 Score =  545 bits (1404), Expect = e-152
 Identities = 292/509 (57%), Positives = 379/509 (74%), Gaps = 14/509 (2%)
 Frame = -2

Query: 1567 MATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGPN 1388
            MATAAVIGLS GKRL +SS+  +D+ EKL   +D+    + +  TK  I ++KSS++ P 
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPT 60

Query: 1387 VPPT-RYIRSIKAMKEQANTLTPSTSATWS----------ESPDXXXXXXXXXXLQKSML 1241
             P + +  +SIKA+KE  +   P+ + +W           ES +          LQKSML
Sbjct: 61   FPASNQQNQSIKALKEHVDD-APTIADSWFQSCNSNDLEVESSEMGYSVEALLLLQKSML 119

Query: 1240 EKQLELPF---MDTTPNYVPRVSQIPVISRSGISARERRIACRRKCFARNNDTEPTSTKP 1070
            EKQ  L F   + T  +   +  +   ++ SG+SAR+RR+  +RK   +        +K 
Sbjct: 120  EKQWNLSFEREVLTEHSSKGKKCKKVAVTCSGVSARQRRMNTKRKTAIKTCGAMQLKSK- 178

Query: 1069 LHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEP 890
                +SPEL++  + GYV+G V+E LL+HAEVVNLS++IK G+ LEEH+S+LK +LG EP
Sbjct: 179  ----ISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCEP 234

Query: 889  TDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGL 710
            +D Q+A SL+IS  EL+ R+ E +LAREKLAMSNVRLVMSIAQKYDN+G  M DL Q GL
Sbjct: 235  SDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGL 294

Query: 709  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVR 530
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGV+RAL +NS+TLRLP HLHERL+ I++AK R
Sbjct: 295  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFR 354

Query: 529  LEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADT 350
            LEE+GI P+ID+IA+ LNMSQKKVRNATEA++K +SLDR+AFPSLNGI GET HSY+AD 
Sbjct: 355  LEERGITPTIDRIAKYLNMSQKKVRNATEAISKTISLDREAFPSLNGIQGETHHSYIADD 414

Query: 349  KLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRE 170
            +++NIPW+G +EW+LKDEVNKL+N TL +RER+IIRLY+G+D E  TWE+I K++GLSRE
Sbjct: 415  RVENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKEGLTWEDISKRIGLSRE 474

Query: 169  RVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            RVRQVGLVA+EKLKH AR+R++EAML+ H
Sbjct: 475  RVRQVGLVALEKLKHAARKRQMEAMLLKH 503


>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
            lycopersicum]
          Length = 509

 Score =  544 bits (1402), Expect = e-152
 Identities = 291/507 (57%), Positives = 372/507 (73%), Gaps = 13/507 (2%)
 Frame = -2

Query: 1570 VMATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGP 1391
            +MAT AVIGLS GKRL +SSF  +DL EKL  ++D+++    V + K  I ++KSS + P
Sbjct: 1    MMATTAVIGLSAGKRLLSSSFYYSDLNEKLSCSSDHSLPCHQVPTVKNVISAKKSSDYSP 60

Query: 1390 NVPPTRYIRSIKAMKEQANTLT-PSTSATWSE---------SPDXXXXXXXXXXLQKSML 1241
            +   +R ++S+KA+KE  +  + PS   +W E           +          LQKSML
Sbjct: 61   SCVSSRKLQSVKALKEHVDIASDPSDVQSWFERFEQLQNESDDEEDDSVEVLLLLQKSML 120

Query: 1240 EKQLELPFMDTTPNYVPRVSQIPV--ISRSGISARERRIACRRKCFARNNDTEPTS-TKP 1070
            EKQ  L   +T      R        I+ SG SAR RR+  R++  A+ +   P S TKP
Sbjct: 121  EKQWNLSAEETLTASTQRKKNCKKMHIACSGTSARRRRMDSRQRVLAQKSSATPISATKP 180

Query: 1069 LHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKVKLGVEP 890
            L   + P+L+++ + GYV+G V+E LLTH EV+ LSKKIK G+ +EE +S+LK +LG EP
Sbjct: 181  LRSILGPDLLQNRLKGYVKGIVSEELLTHTEVLQLSKKIKVGLHVEEQKSRLKERLGCEP 240

Query: 889  TDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMADLTQAGL 710
            +D QLA SL++S  +LQ  + E SLARE+L+MSNVRLVMSIAQ+YDNMG  MADL Q GL
Sbjct: 241  SDDQLAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 709  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSIKHAKVR 530
            IGLLRGIEKFD SKG+KISTYVYWWIRQGV+R L +NS+TLRLP HLHERL  I++AK+R
Sbjct: 301  IGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMR 360

Query: 529  LEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLHSYVADT 350
            LEEKGI PS++ IA SLNMSQKKVRNATEA +KV SLDR+ FPSLNG+PG TLHSY+AD 
Sbjct: 361  LEEKGINPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGTTLHSYIADN 420

Query: 349  KLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQLGLSRE 170
             L+N PWHG + W+LKDEVN L+++TL +RER+IIRLY+G+DSEC TWE+I K++GLSRE
Sbjct: 421  HLENNPWHGVDVWALKDEVNNLISSTLREREREIIRLYYGLDSECLTWEDISKRIGLSRE 480

Query: 169  RVRQVGLVAMEKLKHVARRRRLEAMLM 89
            RVRQVGLVA+EKLKH AR+RRL+AML+
Sbjct: 481  RVRQVGLVALEKLKHAARKRRLDAMLI 507


>gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
          Length = 502

 Score =  543 bits (1400), Expect = e-152
 Identities = 294/515 (57%), Positives = 377/515 (73%), Gaps = 20/515 (3%)
 Frame = -2

Query: 1567 MATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGPN 1388
            MATAAVIGL+TGKRL +SSF  +D+ EK     D+    + ++STK  I ++K+S++ P+
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYRPS 60

Query: 1387 VPPT-RYIRSIKAMKEQANTLTPSTSATW--------------SESPDXXXXXXXXXXLQ 1253
             P + R+ +S KA+KE  +    ST   W               +             LQ
Sbjct: 61   FPSSNRHTQSAKALKESVDVA--STEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 118

Query: 1252 KSMLEKQLELPFMDTTPNYVP-----RVSQIPVISRSGISARERRIACRRKCFARNNDTE 1088
            KSMLEK   L F     +  P     R  +IPVI+ SGISAR+RRI  ++K       T 
Sbjct: 119  KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKK-------TN 171

Query: 1087 PTSTKPLHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKV 908
             T  K    +VS       V GYV+G ++E++L+HAEVV LSKKIK+G+RL++H+S+LK 
Sbjct: 172  MTHVK----AVSDVSSGKQVRGYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKSRLKD 227

Query: 907  KLGVEPTDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMAD 728
            +LG EP+D+QLA SL+IS  ELQ  + E  LAREKLAMSNVRLVMSIAQ+YDN+G  M+D
Sbjct: 228  RLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSD 287

Query: 727  LTQAGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSI 548
            L Q GLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGV+RAL  NS+TLRLP HLHERL  I
Sbjct: 288  LVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI 347

Query: 547  KHAKVRLEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLH 368
            ++AK+RL+EKGI PSID+IAESLNMSQKKVRNATEAV+KV SLDR AFPSLNG+PGET H
Sbjct: 348  RNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHH 407

Query: 367  SYVADTKLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQ 188
            SY+ADT+L+N PWHG+++ +LK+EV+KL++ TL +RE++IIRLY+G+D EC TWE+I K+
Sbjct: 408  SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 467

Query: 187  LGLSRERVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            +GLSRERVRQVGLVA+EKLKH AR+R++EAM++ +
Sbjct: 468  IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502


>ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA
            polymerase sigma factor sigA; Short=Sigma factor A;
            Short=Sigma-A; AltName: Full=RNA polymerase sigma factor
            sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
            Full=RNA polymerase sigma factor sig2; Short=Atsig2;
            Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
            factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags:
            Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA
            polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis
            thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis
            thaliana] gi|2558514|emb|CAA74640.1| plastid RNA
            polymerase sigma factor [Arabidopsis thaliana]
            gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis
            thaliana] gi|17064900|gb|AAL32604.1| RNA polymerase sigma
            subunit 1 [Arabidopsis thaliana]
            gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1
            [Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1|
            AT1G64860 [Arabidopsis thaliana]
            gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit
            1 [Arabidopsis thaliana]
          Length = 502

 Score =  543 bits (1398), Expect = e-151
 Identities = 293/515 (56%), Positives = 376/515 (73%), Gaps = 20/515 (3%)
 Frame = -2

Query: 1567 MATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGPN 1388
            MATAAVIGL+TGKRL +SSF  +D+ EK     D+    + ++STK  I ++K+S++ P+
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 1387 VPPT-RYIRSIKAMKEQANTLTPSTSATW--------------SESPDXXXXXXXXXXLQ 1253
             P + R+ +S KA+KE  +    ST   W               +             LQ
Sbjct: 61   FPSSNRHTQSAKALKESVDVA--STEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 118

Query: 1252 KSMLEKQLELPFMDTTPNYVP-----RVSQIPVISRSGISARERRIACRRKCFARNNDTE 1088
            KSMLEK   L F     +  P     R  +IPVI+ SGISAR+RRI  ++K       T 
Sbjct: 119  KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKK-------TN 171

Query: 1087 PTSTKPLHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKV 908
             T  K    +VS       V GYV+G ++E++L+H EVV LSKKIK+G+RL++H+S+LK 
Sbjct: 172  MTHVK----AVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKD 227

Query: 907  KLGVEPTDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMAD 728
            +LG EP+D+QLA SL+IS  ELQ  + E  LAREKLAMSNVRLVMSIAQ+YDN+G  M+D
Sbjct: 228  RLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSD 287

Query: 727  LTQAGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSI 548
            L Q GLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGV+RAL  NS+TLRLP HLHERL  I
Sbjct: 288  LVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI 347

Query: 547  KHAKVRLEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLH 368
            ++AK+RL+EKGI PSID+IAESLNMSQKKVRNATEAV+KV SLDR AFPSLNG+PGET H
Sbjct: 348  RNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHH 407

Query: 367  SYVADTKLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQ 188
            SY+ADT+L+N PWHG+++ +LK+EV+KL++ TL +RE++IIRLY+G+D EC TWE+I K+
Sbjct: 408  SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 467

Query: 187  LGLSRERVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            +GLSRERVRQVGLVA+EKLKH AR+R++EAM++ +
Sbjct: 468  IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502


>dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 502

 Score =  541 bits (1395), Expect = e-151
 Identities = 293/515 (56%), Positives = 375/515 (72%), Gaps = 20/515 (3%)
 Frame = -2

Query: 1567 MATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGPN 1388
            MATAAVIGL+TGKRL +SSF  +D+ EK     D+    + ++STK  I ++K+S++ P+
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 1387 VPPT-RYIRSIKAMKEQANTLTPSTSATW--------------SESPDXXXXXXXXXXLQ 1253
             P + R+ +S KA+KE  +    ST   W               +             LQ
Sbjct: 61   FPSSNRHTQSAKALKESVDVA--STEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 118

Query: 1252 KSMLEKQLELPFMDTTPNYVP-----RVSQIPVISRSGISARERRIACRRKCFARNNDTE 1088
            KSMLEK   L F     +  P     R  +IPVI+ SGISAR RRI  ++K       T 
Sbjct: 119  KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARPRRIGAKKK-------TN 171

Query: 1087 PTSTKPLHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKV 908
             T  K    +VS       V GYV+G ++E++L+H EVV LSKKIK+G+RL++H+S+LK 
Sbjct: 172  MTHVK----AVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKD 227

Query: 907  KLGVEPTDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMAD 728
            +LG EP+D+QLA SL+IS  ELQ  + E  LAREKLAMSNVRLVMSIAQ+YDN+G  M+D
Sbjct: 228  RLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSD 287

Query: 727  LTQAGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSI 548
            L Q GLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGV+RAL  NS+TLRLP HLHERL  I
Sbjct: 288  LVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI 347

Query: 547  KHAKVRLEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLH 368
            ++AK+RL+EKGI PSID+IAESLNMSQKKVRNATEAV+KV SLDR AFPSLNG+PGET H
Sbjct: 348  RNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHH 407

Query: 367  SYVADTKLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQ 188
            SY+ADT+L+N PWHG+++ +LK+EV+KL++ TL +RE++IIRLY+G+D EC TWE+I K+
Sbjct: 408  SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 467

Query: 187  LGLSRERVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            +GLSRERVRQVGLVA+EKLKH AR+R++EAM++ +
Sbjct: 468  IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502


>gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
          Length = 502

 Score =  541 bits (1393), Expect = e-151
 Identities = 292/515 (56%), Positives = 376/515 (73%), Gaps = 20/515 (3%)
 Frame = -2

Query: 1567 MATAAVIGLSTGKRLSTSSFCPTDLAEKLFPAADYNMLPFSVSSTKCTIVSQKSSHFGPN 1388
            MATAAVIGL+TGKRL +SSF  +D+ EK     D+    + ++STK  I ++K+S++ P+
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 1387 VPPT-RYIRSIKAMKEQANTLTPSTSATW--------------SESPDXXXXXXXXXXLQ 1253
             P + R+ +S KA+KE  +    ST   W               +             LQ
Sbjct: 61   FPSSNRHTQSAKALKESVDVA--STEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 118

Query: 1252 KSMLEKQLELPFMDTTPNYVP-----RVSQIPVISRSGISARERRIACRRKCFARNNDTE 1088
            KSMLEK   L F     +  P     R  +IPVI+ SGISAR+RRI  ++K       T 
Sbjct: 119  KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKK-------TN 171

Query: 1087 PTSTKPLHFSVSPELIKSGVSGYVRGTVNENLLTHAEVVNLSKKIKAGVRLEEHRSKLKV 908
             T  K    +VS       V GYV+G ++E++L+H EVV LSKKIK+G+RL++H+S+LK 
Sbjct: 172  MTHVK----AVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKD 227

Query: 907  KLGVEPTDKQLASSLRISPFELQKRIFESSLAREKLAMSNVRLVMSIAQKYDNMGTSMAD 728
            +LG EP+D+QLA SL+IS  ELQ  + E  LAREKLAMSNVRLVMSIAQ+Y+N+G  M+D
Sbjct: 228  RLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYNNLGAEMSD 287

Query: 727  LTQAGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVTRALFKNSKTLRLPIHLHERLTSI 548
            L Q GLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGV+RAL  NS+TLRLP HLHERL  I
Sbjct: 288  LVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLI 347

Query: 547  KHAKVRLEEKGIAPSIDKIAESLNMSQKKVRNATEAVNKVLSLDRQAFPSLNGIPGETLH 368
            ++AK+RL+EKGI PSID+IAESLNMSQKKVRNATEAV+KV SLDR AFPSLNG+PGET H
Sbjct: 348  RNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHH 407

Query: 367  SYVADTKLDNIPWHGFNEWSLKDEVNKLLNTTLSKRERDIIRLYHGIDSECHTWEEIGKQ 188
            SY+ADT+L+N PWHG+++ +LK+EV+KL++ TL +RE++IIRLY+G+D EC TWE+I K+
Sbjct: 408  SYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKR 467

Query: 187  LGLSRERVRQVGLVAMEKLKHVARRRRLEAMLMNH 83
            +GLSRERVRQVGLVA+EKLKH AR+R++EAM++ +
Sbjct: 468  IGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502