BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00004092
         (1592 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|54035746...   324   8e-92
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|...   318   4e-84
ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus] g...   288   6e-83
gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus]             285   5e-82
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   300   1e-78
emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]               291   7e-76
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]               289   2e-75
emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]               288   3e-75
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]               288   5e-75
emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao s...   287   8e-75
gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]                286   1e-74
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|3478...   285   3e-74
ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16...   285   3e-74
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               283   1e-73
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]               280   9e-73
gb|ACH86211.1| unknown [Citrus yellow mosaic virus]                   280   1e-72
gb|AHG94942.1| ORF3, partial [Dioscorea bacilliform virus]            278   6e-72
gb|AER00544.1| ORF III [Citrus yellow mosaic virus]                   278   6e-72
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]               277   8e-72
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               276   2e-71

>ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|540357465|gb|AGV08293.1| ORF3
            [Piper yellow mottle virus]
          Length = 1925

 Score =  324 bits (831), Expect(2) = 8e-92
 Identities = 196/492 (39%), Positives = 281/492 (57%), Gaps = 7/492 (1%)
 Frame = -2

Query: 1456 AWTLGLDIGASVIDSDYRGEIKIMIFNHSN*QVIVQQEMTVAQIIFEKIIHPDIYEVPRL 1277
            AW LG+ +GA VID+D++GEIK++IFN SN  V ++    VAQ++ E+I  P +  V R+
Sbjct: 399  AWQLGIVVGAGVIDADFQGEIKVLIFNLSNSPVEIEAGDAVAQLVLERISTPSL-SVWRV 457

Query: 1276 --SATVRGESGFGXXXXXXXXXTPEPHSTRHKSNWDIFLPKEKQII--SAFAEEETLIRH 1109
                TVRG +             P P   + + +    L +    +  + + EEE +   
Sbjct: 458  FTEETVRGTAS------PLDEDLPYPQLRQQQDDTSPLLAETGGHLPNTNYEEEEAI--- 508

Query: 1108 LQEDLGLDYAGDTSPGATVLQPIDLALENLIEEDDDFSYIQYLATLFNPKSTIWDEYDDE 929
                         SP  T  + I         +DD +   Q+     N +  +WD  ++E
Sbjct: 509  -------------SPAVTTPEDI---------QDDLY---QHDLAAINTEGPVWDNSEEE 543

Query: 928  GDLS*KWTNPISTTPAP*QLIAVGQEMEYPILRQLLATKLPEPVQQQVYSISTVASPYQP 749
             +                + I    +MEYP +R L          Q+V+S  +  S Y+P
Sbjct: 544  EE---------GYAAEEEEEI---DDMEYPHVRALRLK------MQEVFSAQSEISQYRP 585

Query: 748  PQDTTMGPPSYPSAIRDPGTPQLVQPTFHQENPKLRGGSNNEL---WNLPSALQQGGAIF 578
            PQDT MGP SYP A+         +P F   N       + +L   W LPSA QQ GA+F
Sbjct: 586  PQDTAMGPSSYPPAVNITNEAGPSRPMFEGYNKSGVRFKHKDLADNWTLPSAQQQQGAVF 645

Query: 577  AIPKQLSLFHDVFFGWESIILNHVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPT 398
             IP QL LF  VF  WESI  N VAAQGFT+P +K++++E+LLGE EKLTWIQWR TY  
Sbjct: 646  VIPTQLGLFDSVFARWESITKNLVAAQGFTDPADKVDFIENLLGEAEKLTWIQWRSTYQA 705

Query: 397  EYEALIQAADGRRGTQNIISQMRRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQY 218
            EY+ ++ +ADGR GT+NI+SQ+RR+F+ ED + GST IQDEAY  LE+L+  N+K++V +
Sbjct: 706  EYQQMMNSADGRAGTENILSQVRRIFALEDPSTGSTKIQDEAYRDLEQLTCSNIKDLVPF 765

Query: 217  MNDYM*LASKTGRLYTGSELSKKI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYK 38
            +NDY+ LA+KTGR++ G+ELS+K+  K+P +LG +IK AF+ KY     GVIPR+LF +K
Sbjct: 766  LNDYLRLAAKTGRMFLGTELSEKLWMKLPGNLGRRIKEAFDNKYKGNEAGVIPRILFTHK 825

Query: 37   FLE*ECKDAAFK 2
            +LE +CK+AAF+
Sbjct: 826  YLEDQCKEAAFQ 837



 Score = 42.0 bits (97), Expect(2) = 8e-92
 Identities = 21/53 (39%), Positives = 33/53 (62%)
 Frame = -3

Query: 1587 AAGFDLAANITVVIEPRGQALITTGLSLEIPWGTYGRLATRSS*PGHLA*ILG 1429
            AAG++L     +VI+P  + L  TG+++ +P G YGR+A RSS    L  ++G
Sbjct: 355  AAGYNLFGTERLVIQPGERQLQRTGIAIRVPEGHYGRIAARSSAAWQLGIVVG 407


>ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|gb|AEF56561.1|
            polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  318 bits (815), Expect = 4e-84
 Identities = 161/288 (55%), Positives = 202/288 (70%), Gaps = 3/288 (1%)
 Frame = -2

Query: 856  QEMEYPILRQLLATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYPSAIRDPG---TP 686
            +EM+YP   + +         +++ S S V SPY+PP+D  MG PSYP A   PG   + 
Sbjct: 479  EEMDYPQRMKKI---------EKLLSTSEVTSPYRPPEDAAMGRPSYPPARTIPGGGASS 529

Query: 685  QLVQPTFHQENPKLRGGSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESIILNHV 506
                P F     + +GG N+E+W LPSA Q+ GA+F IP+QL LF+D F  WES+  NHV
Sbjct: 530  SAEPPRFDAARTRFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWESVTKNHV 589

Query: 505  AAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQMRR 326
            A QGFT+  +KI+YME+LLGEIEKL WIQWRMTY TEYEAL+   +GR GTQNI+SQMRR
Sbjct: 590  ATQGFTDTRDKIKYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILSQMRR 649

Query: 325  VFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELSKKI 146
            VFS ED  +GST IQDEAY  LE++S  +VK I+ ++N+YM LA+KTGRL+ G ELS+KI
Sbjct: 650  VFSLEDPAQGSTVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKI 709

Query: 145  *FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
              KMP DL   IK  F+ KY  +  GV+PRVLFAYKFLE EC+DAAFK
Sbjct: 710  WMKMPGDLRKTIKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFK 757


>ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus]
            gi|113901272|gb|ABI47983.1| ORF3 protein [Dioscorea
            bacilliform virus]
          Length = 1887

 Score =  288 bits (737), Expect(2) = 6e-83
 Identities = 185/503 (36%), Positives = 268/503 (53%), Gaps = 24/503 (4%)
 Frame = -2

Query: 1444 GLDIGASVIDSDYRGEIKIMIFNHSN*QVIVQQEMTVAQIIFEKIIHPDIYEVPRLSATV 1265
            GL I   V+D DYRGE++I++ N++   V + +   VAQI+  ++  P + E   L+ TV
Sbjct: 398  GLQITGGVVDPDYRGELQIILINNTFTCVPILKGTFVAQIVLHQVATPAVQETTTLTPTV 457

Query: 1264 RGESGFGXXXXXXXXXTPEPHSTRHKSNWDIFLPKEKQIISAFAEEETLIRHLQEDLGL- 1088
            RG  GFG               T   SN    +  E++ ++        +    ED    
Sbjct: 458  RGTRGFGTL-------------TAEASNMITKVRVEERPVNPVPTPTDHMEEDDEDAEAY 504

Query: 1087 -DYAGDTSPGATVLQPIDLALENLIEEDDD------------------FSYIQYLATLF- 968
             DY    S  +   +  + + E   E DDD                  FS    +AT+  
Sbjct: 505  GDYLSYLSSRSFSREGGEKSREVEAEADDDEDLYFRPSPARVTFSDDPFSEDPTIATIRE 564

Query: 967  --NPKSTIWDEYDDEGDLS*KWTNPISTTPAP*QLIAVGQEMEYPILRQLLATKLPEPVQ 794
              +    I+DE DD  D                +L+++  + +YP LRQL         +
Sbjct: 565  SGDASQPIFDESDDNEDHE-----------LIQELVSLEADFDYPQLRQL---------E 604

Query: 793  QQVYSISTVASPYQPPQDTTMGPPSYPSAIRDPGTPQLVQPTFH-QENPKLRGGSNNELW 617
              V + S+  S Y PP+DTTM PP+YP A  D   P    P++      + +  + +   
Sbjct: 605  DCVIAASSAVSNYTPPEDTTMNPPTYPPARIDQAGPSHSGPSYSVPSGTRFKPMNYSANL 664

Query: 616  NLPSALQQGGAIFAIPKQLSLFHDVFFGWESIILNHVAAQGFTNPNEKIEYMESLLGEIE 437
             LPSA Q  GA+F +P +L  F +VF  WESI  N  +   F +  EK +++E+LLGE E
Sbjct: 665  QLPSAQQTTGAMFYMPLELDKFDEVFSRWESITKNITSQHSFISGREKADFIENLLGETE 724

Query: 436  KLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQMRRVFSSEDATRGSTAIQDEAYHSLE 257
            KLTWIQWR T+  E+++LI AADGR GTQNIISQ+R +FS ED  RGST IQ++AY  LE
Sbjct: 725  KLTWIQWRTTFNAEFDSLIAAADGREGTQNIISQIRTIFSLEDPFRGSTKIQEDAYRDLE 784

Query: 256  KLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELSKKI*FKMPSDLGNKIKAAFEEKYFDL 77
            ++S  +V++I+ +MN+YM +A+KTGRL+  SELS+K   K+P DLG  IK +F++ Y   
Sbjct: 785  RISCKDVQDIIPFMNEYMRIAAKTGRLFISSELSEKFWMKLPGDLGKTIKDSFDKTYVGN 844

Query: 76   TIGVIPRVLFAYKFLE*ECKDAA 8
            T+GV PR+LF YK+L+ ECK AA
Sbjct: 845  TVGVHPRILFTYKYLQEECKKAA 867



 Score = 48.5 bits (114), Expect(2) = 6e-83
 Identities = 22/44 (50%), Positives = 32/44 (72%)
 Frame = -3

Query: 1590 GAAGFDLAANITVVIEPRGQALITTGLSLEIPWGTYGRLATRSS 1459
            G+ G+DLAA   VVI+PR   L+ TG+++E+P GTY +L  +SS
Sbjct: 349  GSVGYDLAACEDVVIQPRRPTLVKTGIAIEVPAGTYAQLYLKSS 392


>gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus]
          Length = 1295

 Score =  285 bits (729), Expect(2) = 5e-82
 Identities = 181/502 (36%), Positives = 261/502 (51%), Gaps = 23/502 (4%)
 Frame = -2

Query: 1444 GLDIGASVIDSDYRGEIKIMIFNHSN*QVIVQQEMTVAQIIFEKIIHPDIYEVPRLSATV 1265
            GL I   V+D DYRGE++I++ N++   V + +   VAQ++  ++  P + E   L+ T 
Sbjct: 398  GLQITGGVVDPDYRGELQIILINNTFTCVPILKGTFVAQVVLHQVATPAVQETTTLTPTA 457

Query: 1264 RGESGFGXXXXXXXXXT-----------PEPHSTRH--------KSNWDIFLPKEKQIIS 1142
            RG  GFG                     P P  T H        ++  D       +  S
Sbjct: 458  RGTRGFGTLTAEASNMITKVRVEGRPVNPVPTPTDHMEEDDEDAEAYGDYLSYLSSRSFS 517

Query: 1141 AFAEEETLIRHLQEDLGLDYAGDTSPGATVLQPIDLALENLIEEDDDFSYIQYLATLF-- 968
                E++     + D   D     SP                  DD FS    +AT+   
Sbjct: 518  REGGEKSREVEAEADEDEDLYFRPSPARVTFS------------DDPFSEDPTIATIRES 565

Query: 967  -NPKSTIWDEYDDEGDLS*KWTNPISTTPAP*QLIAVGQEMEYPILRQLLATKLPEPVQQ 791
             +    I+DE DD  D                +L+++  + +YP LRQL         + 
Sbjct: 566  GDASQPIFDESDDNEDHE-----------LIQELVSLEADFDYPQLRQL---------ED 605

Query: 790  QVYSISTVASPYQPPQDTTMGPPSYPSAIRDPGTPQLVQPTFH-QENPKLRGGSNNELWN 614
             V + S+  S Y PP+DTTM PP+YP A  D   P    P++      + +  + +    
Sbjct: 606  CVIAASSAVSNYTPPEDTTMNPPTYPPARIDQAGPSYSGPSYSVPSGTRFKPMNYSANLQ 665

Query: 613  LPSALQQGGAIFAIPKQLSLFHDVFFGWESIILNHVAAQGFTNPNEKIEYMESLLGEIEK 434
            LPSA Q  GA+F +P +L  F +VF  WESI  N  +   F +  EK +++E+LLGE EK
Sbjct: 666  LPSAQQTTGAMFYMPLELDKFDEVFSRWESITKNITSQHSFISGREKADFIENLLGETEK 725

Query: 433  LTWIQWRMTYPTEYEALIQAADGRRGTQNIISQMRRVFSSEDATRGSTAIQDEAYHSLEK 254
            LTWIQWR T+  E+++LI AADGR GTQNIISQ+R +FS ED  RGS  IQ++AY  LE+
Sbjct: 726  LTWIQWRTTFNAEFDSLIAAADGREGTQNIISQIRTIFSLEDPFRGSAKIQEDAYRDLER 785

Query: 253  LSYDNVKNIVQYMNDYM*LASKTGRLYTGSELSKKI*FKMPSDLGNKIKAAFEEKYFDLT 74
            +S  +V++I+ +MN+YM +A+KTGRL+  SELS+K   K+P DLG  IK +F++ Y   T
Sbjct: 786  ISCKDVQDIIPFMNEYMRIAAKTGRLFISSELSEKFWMKLPGDLGKTIKDSFDKTYVGNT 845

Query: 73   IGVIPRVLFAYKFLE*ECKDAA 8
            +GV PR+LF YK+L+ ECK AA
Sbjct: 846  VGVHPRILFTYKYLQEECKKAA 867



 Score = 48.5 bits (114), Expect(2) = 5e-82
 Identities = 22/44 (50%), Positives = 32/44 (72%)
 Frame = -3

Query: 1590 GAAGFDLAANITVVIEPRGQALITTGLSLEIPWGTYGRLATRSS 1459
            G+ G+DLAA   VVI+PR   L+ TG+++E+P GTY +L  +SS
Sbjct: 349  GSVGYDLAACEDVVIQPRRPTLVKTGIAIEVPAGTYAQLYLKSS 392


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
            gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
            bacilliform virus GD1]
          Length = 1892

 Score =  300 bits (768), Expect = 1e-78
 Identities = 170/385 (44%), Positives = 226/385 (58%), Gaps = 36/385 (9%)
 Frame = -2

Query: 1048 QPIDLALENLIEEDDDFSYIQYLATLFNPKSTIWDEYDDEGDLS*KWTNPIST------- 890
            Q +  + E   +EDD  S  Q+LA      +T       +   S  W NP +        
Sbjct: 409  QLLSCSQEESDDEDDWVSRFQFLAQFDEEPAT-----QPQSPQSPTWYNPFAEGGGSDEN 463

Query: 889  --TPAP*QLIAVGQEM-----------------------EYPILRQLLATKLPEPVQQQV 785
               P P +   +G EM                        YP LR+LL        +++V
Sbjct: 464  DENPDPEESEEMGNEMGYETEVEEQEEKVAMIQEDPDLLPYPHLRELLKN------EEKV 517

Query: 784  YSIS-TVASPYQPPQDTTMGPPSYPSAIRDPGTPQLVQPTFH---QENPKLRGGSNNELW 617
            +S   +  S Y+PPQDT M P  Y  A R   +    QP F       P+ +   + E W
Sbjct: 518  FSTQQSEVSSYRPPQDTAMTPAGYAPA-RGEASSSTHQPMFEGYMPRRPQFKQDRSTEYW 576

Query: 616  NLPSALQQGGAIFAIPKQLSLFHDVFFGWESIILNHVAAQGFTNPNEKIEYMESLLGEIE 437
              P+A  Q GA+F IP+Q+ LFHD F  WESI  N+VA+QGFT+  +K E+ME+LLGE E
Sbjct: 577  QFPTAQGQTGAMFVIPRQIGLFHDAFNRWESITKNYVASQGFTDSKDKAEFMENLLGETE 636

Query: 436  KLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQMRRVFSSEDATRGSTAIQDEAYHSLE 257
            KLTW+QWRM +PTEY+ ++ AADGR GTQNI+SQMRRVF+ ED T GSTA+QDEAY  LE
Sbjct: 637  KLTWVQWRMNFPTEYQEMVNAADGREGTQNILSQMRRVFTLEDPTTGSTAVQDEAYRDLE 696

Query: 256  KLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELSKKI*FKMPSDLGNKIKAAFEEKYFDL 77
            +LS  N+K+IV ++NDY  LA+K+GR++   ELS+K+  KMP DLGNKI+ A+E K+   
Sbjct: 697  RLSCTNIKDIVSFLNDYARLAAKSGRMFISPELSEKLWLKMPYDLGNKIRTAYEAKHEGN 756

Query: 76   TIGVIPRVLFAYKFLE*ECKDAAFK 2
            TIGV PR+LF YK+LE ECK+AAF+
Sbjct: 757  TIGVFPRILFTYKYLEQECKEAAFR 781


>emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]
          Length = 1770

 Score =  291 bits (744), Expect = 7e-76
 Identities = 151/290 (52%), Positives = 191/290 (65%), Gaps = 6/290 (2%)
 Frame = -2

Query: 853  EMEYPILRQLLATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYP------SAIRDPG 692
            EMEYP  R    T   E V             Y PP DT M P  YP      S +  P 
Sbjct: 382  EMEYPRRRPQTETVFSETVD------------YTPPGDTLMTPVGYPPASSSRSTVTTPS 429

Query: 691  TPQLVQPTFHQENPKLRGGSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESIILN 512
             P L +         L+     E W LPS+    GA+F +PKQ+ LFHDVF  WESI  N
Sbjct: 430  RPPLFEGRVTHVPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQMGLFHDVFSRWESITKN 489

Query: 511  HVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQM 332
            +VAAQGFT+P EK+E+ME+LLGE EKLTWIQWRM Y  EY+ L+  ADGR+GTQNI+SQ+
Sbjct: 490  YVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQI 549

Query: 331  RRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELSK 152
            +RVFS ED   GST IQD AY  LE+L+  N+K+IVQ++NDY  LA+K+GRL+ G+ELS+
Sbjct: 550  KRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSE 609

Query: 151  KI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            K+  KMP +LGN++K AF+++Y    +GV PR+LFAY++LE ECKDAAFK
Sbjct: 610  KLWMKMPPELGNRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFK 659


>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
          Length = 1816

 Score =  289 bits (740), Expect = 2e-75
 Identities = 150/290 (51%), Positives = 191/290 (65%), Gaps = 6/290 (2%)
 Frame = -2

Query: 853  EMEYPILRQLLATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYP------SAIRDPG 692
            EMEYP  R    T   E V             Y PP DT M P  YP      S +  P 
Sbjct: 458  EMEYPRRRPRTETVFSETVD------------YTPPGDTLMTPVGYPPASSSRSTVTTPS 505

Query: 691  TPQLVQPTFHQENPKLRGGSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESIILN 512
             P L +         L+     E W LPS+    GA+F +PKQ+ LFH+VF  WESI  N
Sbjct: 506  RPPLFEGRVTHVPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITKN 565

Query: 511  HVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQM 332
            +VAAQGFT+P EK+E+ME+LLGE EKLTWIQWRM Y  EY+ L+  ADGR+GTQNI+SQ+
Sbjct: 566  YVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQI 625

Query: 331  RRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELSK 152
            +RVFS ED   GST IQD AY  LE+L+  N+K+IVQ++NDY  LA+K+GRL+ G+ELS+
Sbjct: 626  KRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSE 685

Query: 151  KI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            K+  KMP +LGN++K AF+++Y    +GV PR+LFAY++LE ECKDAAFK
Sbjct: 686  KLWMKMPPELGNRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFK 735


>emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  288 bits (738), Expect = 3e-75
 Identities = 150/290 (51%), Positives = 190/290 (65%), Gaps = 6/290 (2%)
 Frame = -2

Query: 853  EMEYPILRQLLATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYP------SAIRDPG 692
            EMEYP  R    T   E V             Y PP DT M P  YP      S +  P 
Sbjct: 459  EMEYPRRRPQTETVFSETVD------------YTPPGDTLMTPVGYPPASSSRSTVTTPS 506

Query: 691  TPQLVQPTFHQENPKLRGGSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESIILN 512
             P L +         L+     E W LPS+    GA+F +PKQ+ LFHDVF  WESI  N
Sbjct: 507  RPPLFEGRVTHVPRFLKRDDYTEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESITKN 566

Query: 511  HVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQM 332
            +VAAQ FT+P EK+E+ME+LLGE EKLTWIQWRM Y  EY+ L+  ADGR+GTQNI+SQ+
Sbjct: 567  YVAAQSFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQI 626

Query: 331  RRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELSK 152
            +RVFS ED   GST IQD AY  LE+L+  N+K+IVQ++NDY  LA+K+GRL+ G+ELS+
Sbjct: 627  KRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSE 686

Query: 151  KI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            K+  KMP +LGN++K AF+++Y    +GV PR+LFAY++LE ECKDAAFK
Sbjct: 687  KLWMKMPPELGNRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFK 736


>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
          Length = 1839

 Score =  288 bits (737), Expect = 5e-75
 Identities = 149/291 (51%), Positives = 192/291 (65%), Gaps = 6/291 (2%)
 Frame = -2

Query: 856  QEMEYPILRQLLATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYP------SAIRDP 695
            +EMEYP  R    T   E V             Y PP DT M P  YP      S +  P
Sbjct: 453  EEMEYPKRRPQTETAFSETVD------------YTPPGDTMMTPVGYPPASSSRSTVTTP 500

Query: 694  GTPQLVQPTFHQENPKLRGGSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESIIL 515
              P L +         L+     E W LPS+    GA+F +PKQ+ LFH+VF  WESI  
Sbjct: 501  SRPPLFEGRTTHVPRFLKRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITK 560

Query: 514  NHVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQ 335
            N+VAAQGFT+P EK+E+ME+LLGE EKLTWIQWRM Y  EY+ L+  ADGR+GTQNI+SQ
Sbjct: 561  NYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQ 620

Query: 334  MRRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELS 155
            ++RVFS ED   GST IQD AY  LE+L+  N+K+IVQ++NDY  LA+K+GRL+ G+ELS
Sbjct: 621  IKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELS 680

Query: 154  KKI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            +K+  KMP +LG+++K AF+++Y    +GV PR+LFAY++LE ECKDAAFK
Sbjct: 681  EKLWMKMPPELGHRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFK 731


>emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao swollen shoot virus]
          Length = 1868

 Score =  287 bits (735), Expect = 8e-75
 Identities = 148/296 (50%), Positives = 199/296 (67%), Gaps = 6/296 (2%)
 Frame = -2

Query: 871  LIAVGQEMEYPILRQLLATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYP------S 710
            +  +  EMEYP  R       P+  +  VYS +   + Y PP DT M P  YP      S
Sbjct: 477  IAGINSEMEYPQRR-------PQQTETVVYSET---ADYTPPGDTVMTPVGYPPASSSRS 526

Query: 709  AIRDPGTPQLVQPTFHQENPKLRGGSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGW 530
             +  P  P L +         L+     E W LPS+    GA+F +P+Q+ LFH+VF  W
Sbjct: 527  TVTAPTRPPLYEGRMPHAPRFLKRDDYTEWWQLPSSQGTTGALFVMPRQVGLFHEVFSRW 586

Query: 529  ESIILNHVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQ 350
            ESI  N+VAAQGFT+P EK+E++E+LLGE EKLTWIQWRM Y TEY+ L+  ADGR+GTQ
Sbjct: 587  ESITKNYVAAQGFTDPVEKMEFIENLLGETEKLTWIQWRMNYETEYQTLLTLADGRQGTQ 646

Query: 349  NIISQMRRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYT 170
            NI+SQ++RVFS ED   GST IQD AY  LE+L+ +N+K+IVQ++N Y  LA+K+GRL+ 
Sbjct: 647  NILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCNNIKDIVQFLNGYGRLAAKSGRLFL 706

Query: 169  GSELSKKI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            G+ELS+K+  KMP +LG+++K AF+++Y    +GV PR+LFAY++LE ECKDAAFK
Sbjct: 707  GAELSEKLWMKMPPELGHRMKEAFQKEYAGNEVGVFPRILFAYRYLEQECKDAAFK 762


>gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]
          Length = 1872

 Score =  286 bits (733), Expect = 1e-74
 Identities = 158/344 (45%), Positives = 214/344 (62%), Gaps = 6/344 (1%)
 Frame = -2

Query: 1015 EEDDDFSYIQYLATLFNPKSTIWDEYDDEGDLS*KWTNPISTTPAP*QLIAVGQEMEYPI 836
            EE+D++    Y+A L         E DD       WT  I++         +  EMEYP 
Sbjct: 455  EEEDEYDPNTYMAYLQK-------EEDD-------WTEIIAS---------LNPEMEYPQ 491

Query: 835  LRQLLATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYP------SAIRDPGTPQLVQ 674
             R    T++ E V  ++         Y PP DT M P  YP      S +  P  P L +
Sbjct: 492  RR----TEVAETVFSEIVD-------YTPPGDTLMTPVGYPPASSSRSTVTTPSRPPLYE 540

Query: 673  PTFHQENPKLRGGSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESIILNHVAAQG 494
                  +  LR     E W LPS+    GA+F +PKQ+ LFHDVF  WESI  N+V+AQG
Sbjct: 541  GRIPSASRVLRRDDYTEWWQLPSSQGTTGALFVMPKQIGLFHDVFSRWESITKNYVSAQG 600

Query: 493  FTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQMRRVFSS 314
             T+P EK+E++E+LLGE EKLTWIQWRM Y  EY+ L+  A+GR+GTQNI+SQ++RVFS 
Sbjct: 601  ITDPTEKMEFIENLLGETEKLTWIQWRMRYEAEYQQLLTLAEGRQGTQNILSQIKRVFSL 660

Query: 313  EDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELSKKI*FKM 134
            ED   GST IQD AY  LE+L+  N+K+IVQ++NDY  LA+K+GRL+ G+ELS+K+  KM
Sbjct: 661  EDPASGSTRIQDSAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFIGTELSEKLWMKM 720

Query: 133  PSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            P +LG++++ AF+++Y    +GV PR+LFAY++LE ECKDAAFK
Sbjct: 721  PPELGHRMREAFQKEYEGNEVGVFPRILFAYRYLEQECKDAAFK 764


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|347871|gb|AAA03171.1|
            polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score =  285 bits (730), Expect = 3e-74
 Identities = 147/291 (50%), Positives = 191/291 (65%), Gaps = 6/291 (2%)
 Frame = -2

Query: 856  QEMEYPILRQLLATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYP------SAIRDP 695
            +EMEYP  R        E V             Y PP DT M P  YP      S +  P
Sbjct: 453  EEMEYPKRRPQTEMAFSETVD------------YTPPGDTMMTPVGYPPASSSRSTVTTP 500

Query: 694  GTPQLVQPTFHQENPKLRGGSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESIIL 515
              P L +         L+     E W LPS+    GA+F +PKQ+ LFH+VF  WESI  
Sbjct: 501  SRPPLFEGRTTHVPRFLKRDEYTEWWQLPSSQGTTGALFVMPKQMGLFHEVFSRWESITK 560

Query: 514  NHVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQ 335
            N+VAAQGFT+P EK+E+ME+LLGE EKLTWIQWRM Y  EY+ L+  ADGR+GTQNI+SQ
Sbjct: 561  NYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILSQ 620

Query: 334  MRRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELS 155
            ++R+FS ED   GST IQD AY  LE+L+  N+K+IVQ++NDY  LA+K+GRL+ G+ELS
Sbjct: 621  IKRIFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELS 680

Query: 154  KKI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            +K+  KMP +LG+++K AF+++Y    +GV PR+LFAY++LE ECKDAAFK
Sbjct: 681  EKLWMKMPPELGHRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFK 731


>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
            gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
            yellow mosaic virus]
          Length = 1983

 Score =  285 bits (730), Expect = 3e-74
 Identities = 150/292 (51%), Positives = 198/292 (67%), Gaps = 8/292 (2%)
 Frame = -2

Query: 853  EMEYPILRQLLATK---LPEPVQQQVYSISTVASPYQPPQDTTMGPPSYPSA--IRDPG- 692
            E +YP   +L A +    P+P  ++V  +S+  S Y PP DT M P +YP A  I  P  
Sbjct: 581  EFDYPAFARLQAHEESGRPKPKTEKV--LSSAISSYTPPTDTAMTPVAYPPAQNIASPSY 638

Query: 691  TPQLVQPTFHQENPKLRG--GSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESII 518
             P    P F    PK       N+   +LPSA Q  GA+F +P+Q+ LFH+VF  WE+I 
Sbjct: 639  NPSPQMPMFEGYYPKRPNFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAIT 698

Query: 517  LNHVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIIS 338
              +VA QG T+P +K E++E++LG  EK+ W QWRM Y  EYE L+  ADGR GTQNI+S
Sbjct: 699  KAYVAQQGITDPRDKAEFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILS 758

Query: 337  QMRRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSEL 158
            QMRRVFS ED T GSTA+QDEAY  LE+L+ D+VK+IVQY+ND+M +A+KTGR++ G EL
Sbjct: 759  QMRRVFSLEDPTTGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPEL 818

Query: 157  SKKI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            S+K+  KMP DLG ++K A+EEK+    +GV PR+LFAYK+LE ECKDAAF+
Sbjct: 819  SEKLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFR 870


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  283 bits (724), Expect = 1e-73
 Identities = 148/292 (50%), Positives = 197/292 (67%), Gaps = 8/292 (2%)
 Frame = -2

Query: 853  EMEYPILRQLLATK---LPEPVQQQVYSISTVASPYQPPQDTTMGPPSYPSAIRDPG--- 692
            E +YP   +L A +    P+P  ++V  +S+  S Y PP+DT M P +YP A    G   
Sbjct: 566  EFDYPAFARLQAHEESGQPKPKTEKV--LSSAISSYTPPRDTAMTPVAYPPAQNVAGPSY 623

Query: 691  TPQLVQPTFHQENPKLRG--GSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESII 518
             P    P F    PK       N+   +LPSA Q  GA+F +P+Q+ LFH+VF  WE+I 
Sbjct: 624  NPSPQMPMFEGYYPKRPNFKRDNHAFISLPSAHQSTGALFLMPQQIGLFHEVFTSWEAIT 683

Query: 517  LNHVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIIS 338
              +VA QG T+P +K +++E++LG  EK+ W QWRM Y  EYE L+  ADGR GTQNI+S
Sbjct: 684  KAYVAQQGITDPKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILS 743

Query: 337  QMRRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSEL 158
            QMRRVFS ED   GSTA+QDEAY  LE+L+ D+VK+IVQY+ND+M +A+KTGR++ G EL
Sbjct: 744  QMRRVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPEL 803

Query: 157  SKKI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            S+K+  KMP DLG ++K A+EEK+    IGV PR+LFAYK+LE ECKDAAF+
Sbjct: 804  SEKLWLKMPGDLGQRMKKAYEEKHPGNIIGVCPRILFAYKYLEGECKDAAFR 855


>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1979

 Score =  280 bits (717), Expect = 9e-73
 Identities = 148/294 (50%), Positives = 199/294 (67%), Gaps = 10/294 (3%)
 Frame = -2

Query: 853  EMEYPILRQLL---ATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYPSA--IRDPG- 692
            E +YP   +L        P+P  ++V  +S+  S Y PP DT M P +YP A  I  P  
Sbjct: 573  EFDYPAFAKLQDHEKCSRPKPKTEKV--LSSAISSYTPPSDTAMTPVAYPPAQNIASPSY 630

Query: 691  --TPQLVQPTFHQENPKLRG--GSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWES 524
              +PQ+  P F   +PK       N+   +LPSA Q  GA+F +P+Q+ LFH+VF  WE+
Sbjct: 631  NPSPQI--PMFEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEA 688

Query: 523  IILNHVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNI 344
            I   +VA QG T+P +K +++E++LG  EK+ W QWRM Y  EYE L+  ADGR GTQNI
Sbjct: 689  ITKAYVAQQGITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNI 748

Query: 343  ISQMRRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGS 164
            +SQMRRVFS ED   GSTA+QDEAY  LE+L+ D+VK+IVQY+ND+M +A+KTGR++ G 
Sbjct: 749  LSQMRRVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGP 808

Query: 163  ELSKKI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            ELS+K+  KMP DLG ++K A+EEK+    +GV PR+LFAYK+LE ECKDAAF+
Sbjct: 809  ELSEKLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFR 862


>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
          Length = 1490

 Score =  280 bits (716), Expect = 1e-72
 Identities = 144/290 (49%), Positives = 195/290 (67%), Gaps = 6/290 (2%)
 Frame = -2

Query: 853 EMEYPILRQLLATKLPEPVQQQVYSI-STVASPYQPPQDTTMGPPSYPSA--IRDPG-TP 686
           E +YP   +L A +    ++ +   + S+  S Y PP+DT M P +YP A  +  P   P
Sbjct: 89  EFDYPAFAKLQAHEESGQLKPKTEKVLSSAISSYNPPRDTAMTPVAYPPAQNVASPSYNP 148

Query: 685 QLVQPTFHQENPKLRG--GSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESIILN 512
               P F    PK       N+   +LPSA Q  GA+F +P+Q+ LFH+VF  WE+I   
Sbjct: 149 SPQMPMFEGYYPKRPNFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKA 208

Query: 511 HVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQM 332
           +VA QG T+P +K +++E++LG  EK+ W QWRM Y  EYE L+  ADGR GTQNI+SQM
Sbjct: 209 YVAQQGITDPKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQM 268

Query: 331 RRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELSK 152
           RRVFS ED   GSTA+QDEAY  LE+L+ D+VK+IVQY+ND+M +A+KTGR++ G ELS+
Sbjct: 269 RRVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSE 328

Query: 151 KI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
           K+  KMP DLG ++K A+EEK+    +GV PR+LFAYK+LE ECKDAAF+
Sbjct: 329 KLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFR 378


>gb|AHG94942.1| ORF3, partial [Dioscorea bacilliform virus]
          Length = 1395

 Score =  278 bits (710), Expect = 6e-72
 Identities = 156/351 (44%), Positives = 217/351 (61%), Gaps = 16/351 (4%)
 Frame = -2

Query: 1009 DDDFSYIQYLATLFNPKSTIWDEYDDEGDLS*KWTNPISTTPAP*QLIAVGQEMEYPILR 830
            D++  YI YL   +NP + ++D+Y + G+        ++T  +         +++YP L+
Sbjct: 21   DEEMEYISYL---YNPDAPVYDDYPEGGEED---VFNLATLDS-------SLDLDYPTLQ 67

Query: 829  QLLATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYPSA---------IRDPGTPQLV 677
            +L AT             S+  S Y+PP+DTTM PP+YP A            P T    
Sbjct: 68   RLEAT-----------IASSAISEYRPPEDTTMNPPTYPPARISGQASTSTGQPSTSYSG 116

Query: 676  QPT--FHQENP-----KLRGGSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESII 518
            QPT  + Q  P     + R  SNN  W+LPSA Q  GA+F +P +L  F +VF  WESI 
Sbjct: 117  QPTSSYSQRVPTGVHFRARDYSNN--WSLPSAQQNTGAMFYLPLELVKFDEVFSRWESIT 174

Query: 517  LNHVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIIS 338
             N V+ Q F    EK E++E+LLGE EKLTWIQWR  +PTEYE L+ +ADGR GTQNI+S
Sbjct: 175  KNLVSQQSFITGKEKAEFIENLLGETEKLTWIQWRTAFPTEYETLLASADGREGTQNILS 234

Query: 337  QMRRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSEL 158
             +R +F+ ED  RGST +Q++AY  LE++S  +VK+++ ++N+YM LA+KTGRL+  +EL
Sbjct: 235  HIRTIFTLEDPYRGSTKVQEQAYLDLERISCRDVKDLIPFLNEYMRLAAKTGRLFISAEL 294

Query: 157  SKKI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAF 5
            S KI  K+P DLG +IK  F+E+Y   TIGV PR++F YKFLE ECK+AAF
Sbjct: 295  SDKIWMKLPGDLGKRIKTKFDEQYAGNTIGVHPRIMFIYKFLEEECKNAAF 345


>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
          Length = 1976

 Score =  278 bits (710), Expect = 6e-72
 Identities = 148/294 (50%), Positives = 197/294 (67%), Gaps = 10/294 (3%)
 Frame = -2

Query: 853  EMEYPILRQLL---ATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYPSA--IRDPG- 692
            E +YP   +L        P+P  ++V  +S+  S Y PP DT M P +YP A  I  P  
Sbjct: 573  EFDYPAFAKLQDYEKRSRPKPKTEKV--LSSAISSYTPPSDTAMTPVAYPPAQNIASPSY 630

Query: 691  --TPQLVQPTFHQENPKLRG--GSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWES 524
              +PQ+  P F   +PK       N+   +LPSA Q  GA+F +P+Q+ LFH+VF  WE+
Sbjct: 631  NPSPQI--PMFEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEA 688

Query: 523  IILNHVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNI 344
            I   +VA QG T+P +K E++E++ G  EK+ W QWRM Y  EYE L+  ADGR GTQNI
Sbjct: 689  ITKAYVAQQGITDPRDKAEFIENMSGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNI 748

Query: 343  ISQMRRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGS 164
            +SQMRRVFS ED   GSTA+QDEAY  LE+L+ D VK+IVQY+ND+M +A+KTGR++ G 
Sbjct: 749  LSQMRRVFSLEDPATGSTAVQDEAYRDLERLTCDLVKHIVQYLNDFMRIAAKTGRMFIGP 808

Query: 163  ELSKKI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            ELS+K+  KMP DLG ++K A+EEK+    +GV PR+LFAYK+LE ECKDAAF+
Sbjct: 809  ELSEKLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFR 862


>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1976

 Score =  277 bits (709), Expect = 8e-72
 Identities = 146/292 (50%), Positives = 195/292 (66%), Gaps = 8/292 (2%)
 Frame = -2

Query: 853  EMEYPILRQLL---ATKLPEPVQQQVYSISTVASPYQPPQDTTMGPPSYPSA--IRDPG- 692
            E +YP   +L        P+P  ++V  +S+  S Y PP DT M P +YP A  I  P  
Sbjct: 573  EFDYPAFAKLQDHEKCSRPKPKTEKV--LSSAISSYTPPSDTAMTPVAYPPAQNIASPSY 630

Query: 691  TPQLVQPTFHQENPKLRG--GSNNELWNLPSALQQGGAIFAIPKQLSLFHDVFFGWESII 518
             P    P F   +PK       N+   +LPSA Q  GA+F +P+Q+ L H+VF  WE+I 
Sbjct: 631  NPSPQVPMFEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLSHEVFTSWEAIT 690

Query: 517  LNHVAAQGFTNPNEKIEYMESLLGEIEKLTWIQWRMTYPTEYEALIQAADGRRGTQNIIS 338
              +VA QG T+P +K +++E++LG  EK+ W QWRM Y  EYE L+  ADGR GTQNI+S
Sbjct: 691  KAYVAQQGITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILS 750

Query: 337  QMRRVFSSEDATRGSTAIQDEAYHSLEKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSEL 158
            QMRRVFS ED   GSTA+QDEAY  LE+L+ D+VK+IVQY+ND+M +A+KTGR++ G EL
Sbjct: 751  QMRRVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPEL 810

Query: 157  SKKI*FKMPSDLGNKIKAAFEEKYFDLTIGVIPRVLFAYKFLE*ECKDAAFK 2
            S+K+  KMP DLG ++K A+EEK+    +GV PR+LFAYK+LE ECKDAAF+
Sbjct: 811  SEKLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFR 862


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  276 bits (706), Expect = 2e-71
 Identities = 140/266 (52%), Positives = 187/266 (70%), Gaps = 7/266 (2%)
 Frame = -2

Query: 778  ISTVASPYQPPQDTTMGPPSYPSA--IRDPG---TPQLVQPTFHQENPKLRG--GSNNEL 620
            +S+  S Y PP+DT M P +YP A  +  P    +PQ+  P F   +PK       N+  
Sbjct: 591  LSSAISSYTPPRDTAMTPVAYPPAQNVASPSYNLSPQM--PMFEGYSPKRPNFKRDNHTF 648

Query: 619  WNLPSALQQGGAIFAIPKQLSLFHDVFFGWESIILNHVAAQGFTNPNEKIEYMESLLGEI 440
             +LPSA Q  GA+F +P+Q+ LFH+VF  WE+I   +VA QG T+P +K +++E++LG  
Sbjct: 649  ISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQGITDPKDKADFIENMLGPT 708

Query: 439  EKLTWIQWRMTYPTEYEALIQAADGRRGTQNIISQMRRVFSSEDATRGSTAIQDEAYHSL 260
            EK+ W QWRM Y  EYE L+  ADGR GTQNI+SQMRRVFS ED   GSTA+QDEAY  L
Sbjct: 709  EKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMRRVFSLEDPATGSTAVQDEAYRDL 768

Query: 259  EKLSYDNVKNIVQYMNDYM*LASKTGRLYTGSELSKKI*FKMPSDLGNKIKAAFEEKYFD 80
            E+L+ D+VK+IVQY+ND+M +A+KTGR + G ELS+K+  KMP DLG ++K A+EEK+  
Sbjct: 769  ERLTCDSVKHIVQYLNDFMRIAAKTGRTFIGPELSEKLWLKMPGDLGQRMKKAYEEKHPG 828

Query: 79   LTIGVIPRVLFAYKFLE*ECKDAAFK 2
              +GV PR+LFAYK+LE ECKDAAF+
Sbjct: 829  NIVGVCPRILFAYKYLEGECKDAAFR 854