BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00004040
         (3199 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1262   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1250   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1250   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1247   0.0  
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro...  1240   0.0  
ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polyme...  1231   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1229   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]      1227   0.0  
gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]      1222   0.0  
gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare su...  1220   0.0  
ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [S...  1219   0.0  
gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops...  1202   0.0  
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...  1202   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1202   0.0  
ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea m...  1199   0.0  
gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare su...  1195   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1192   0.0  
gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]      1191   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1190   0.0  
ref|XP_006647856.1| PREDICTED: probable RNA-dependent RNA polyme...  1189   0.0  

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1262 bits (3265), Expect = 0.0
 Identities = 631/980 (64%), Positives = 768/980 (78%), Gaps = 8/980 (0%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPIY 3015
            LS+    Y+LEL Y++IWEI+LH    Q +++L+ Q++ AP+++++  ++   +Y  P++
Sbjct: 139  LSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVF 198

Query: 3014 NYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVEN 2835
            N+FK+VPDDQWVRT DF+PS+ IGQS  LC+ELPYR +LPD  + F +YKE + R+ +E 
Sbjct: 199  NFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLET 258

Query: 2834 GFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRPN 2655
            G +YSR+LDLVPIV PP GI + YEILFKIN +VQNG + G  LD  FY LV P  +  +
Sbjct: 259  GSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVS 318

Query: 2654 -AYIERALEMMSVMDYSCFAPAKWLIEQYAKF--SRSKHINSPTISLDSDSGLVYVHRVQ 2484
             + IE AL+ +  +   C+ P++WL +QY K+  SRSK  +SP ISLD   GLVYVHRVQ
Sbjct: 319  ISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKP-SSPAISLDD--GLVYVHRVQ 375

Query: 2483 VTPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERR 2304
            VTPS+V+F GPEINVSNRVLRH+   +D+FLRISF+DED +K+HS  +  R  S     R
Sbjct: 376  VTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR 435

Query: 2303 TALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRR 2124
            T +Y RILS L+NGI IG +KFEFLAFSSSQLRE+SAWMFAS     A  IREWMG+FR 
Sbjct: 436  TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 495

Query: 2123 IRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE----QSGYVFSDGIGKISAEFAKK 1956
            IRNVAKYAARLGQSFSSS ETLSV   E ++IPD++    ++ YVFSDGIGK+SAEFA+K
Sbjct: 496  IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 555

Query: 1955 VAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKY 1776
            VA+KC LK + PSAFQIRY GYKGVVA DPTSS KLSLR SM K+ES+ TKLDVLA+SKY
Sbjct: 556  VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKY 615

Query: 1775 QPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANML 1596
            QPCFLNRQLI+LLSTLGI D IFEKK  EAV  LD ILTDP +A EA++LM PGE  N+L
Sbjct: 616  QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNIL 675

Query: 1595 RELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQV 1416
            +ELL+CGYKPDAEPF+SM+LQ FRAS+LLELRTK RIF+P GR+M+GCLDE+R+L YGQV
Sbjct: 676  KELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 735

Query: 1415 FVQVSCFENSRFHN-NGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHH 1239
            FVQ+S     + H  + LF  +R     +++G ++VAKNPCLHPGDVR+L+AVNVP LHH
Sbjct: 736  FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 795

Query: 1238 MVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDV 1059
            MVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL+P +   PM+Y PA +M+LDHDV
Sbjct: 796  MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDV 855

Query: 1058 TIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVP 879
             IE+V EYFTNYIVNDSLGIIANAHTVFAD+   KA    CL+LA+ FSIAVDFPKTGVP
Sbjct: 856  QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVP 915

Query: 878  AEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYD 699
            AEIPP L VKEYPDFMEK D+ TYES+ +IGKL+RA+K+  P    I+ FTK+VA +SYD
Sbjct: 916  AEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYD 975

Query: 698  ADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAE 519
             DMEVDGFE+H++DA + KG YD+KLGNLMD+YGIKTEAEI++G+IMKMSK FTK RDAE
Sbjct: 976  PDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAE 1035

Query: 518  AIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHF 339
            AIG AV+ LRKEAR+WFK+K            AKASAWY+VTYH  YWGCYN G+ R HF
Sbjct: 1036 AIGMAVRALRKEARAWFKEKSG--SDTEDDAYAKASAWYHVTYHPDYWGCYNHGMNRDHF 1093

Query: 338  LSFPWCVYDKLTQIKQKKIS 279
            LSFPWCVYD+L +IK+ K S
Sbjct: 1094 LSFPWCVYDRLVEIKKDKTS 1113


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1250 bits (3235), Expect = 0.0
 Identities = 621/1003 (61%), Positives = 769/1003 (76%), Gaps = 10/1003 (0%)
 Frame = -3

Query: 3197 YLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPI 3018
            +LS+    YKL L +++IW+I+LHR   Q  ++L+ Q+  AP++Y+    ++ +++ DP+
Sbjct: 136  FLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFEDPL 195

Query: 3017 YNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVE 2838
             NYF+DVPD+QWVRT DF+PS  IG S +LCLELP    LP+ ++ FF+YKE +  + +E
Sbjct: 196  LNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFVLE 255

Query: 2837 NGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRP 2658
            +G ++SRN DLVPIV P SG+ + Y ILF++N +VQNG L G  LD  FY LV P    P
Sbjct: 256  SGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDP-NRMP 314

Query: 2657 NAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHI-NSPTISLDSDSGLVYVHRVQV 2481
               IE ALE +  +   C+ P+KW  EQY K+  S +   SP +SLD+  GLVYV++VQ+
Sbjct: 315  VRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDA--GLVYVYKVQI 372

Query: 2480 TPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRT 2301
            TP KVFF GPE+NVSNRVLR Y   +D+FLR+SFVDE+ EK+HS  +  R  S    RRT
Sbjct: 373  TPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRT 432

Query: 2300 ALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRI 2121
            A+Y RILS L+NGI IG KKFEFLAFSSSQLRENS WMFAS     A  IR WMG F +I
Sbjct: 433  AIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKI 492

Query: 2120 RNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQSG----YVFSDGIGKISAEFAKKV 1953
            RNVA+YAARLGQSF SSTETLSV SHE ++IPDIE S     Y+FSDGIGKISAEFA+KV
Sbjct: 493  RNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKV 552

Query: 1952 AAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQ 1773
            A KC  KG  PSAFQIRYAGYKGVVAVDPTSS KLSLR+SM K+ES+NTKLDVLA+SKYQ
Sbjct: 553  AIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQ 612

Query: 1772 PCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLR 1593
            PCFLNRQLITLLSTLG+ D  FE+K  EAV  LD +LTDP RA EA++LM PGE  N+L+
Sbjct: 613  PCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILK 672

Query: 1592 ELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVF 1413
            E+LLCGY+PDAEPF+SM+LQ FRAS+LLELRTK RIF+P GR+M+GCLDE+R+L++GQVF
Sbjct: 673  EMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVF 732

Query: 1412 VQVSCFENSRFHN----NGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHL 1245
            V+   F  SRF N    + +F         +++G ++VAKNPCLHPGD+RIL+AV+VP L
Sbjct: 733  VK---FSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPAL 789

Query: 1244 HHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDH 1065
            HHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPEL+P++   PM+Y P P ++LDH
Sbjct: 790  HHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDH 849

Query: 1064 DVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTG 885
            DVTIEEV EYFTNYIVNDSLG+IANAHT  ADK  LKA    C++LA+ FSIAVDFPKTG
Sbjct: 850  DVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTG 909

Query: 884  VPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQS 705
            VPAEIP  L+ +EYPDFMEK D+ +YES+ +IGKL+R +K+  P    I++FT  VA Q 
Sbjct: 910  VPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQC 969

Query: 704  YDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRD 525
            YD DMEVDGFE++++DAF++K  YD+KLGNLM++YGIKTEAE++SG+ MKMSK FTK RD
Sbjct: 970  YDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRD 1029

Query: 524  AEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRP 345
            AEAIG AV+ L+KEARSWF +K S         +AKASAWY+VTYHH+YWGCYNEG+ R 
Sbjct: 1030 AEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRD 1089

Query: 344  HFLSFPWCVYDKLTQIKQKKISQ-RKTASQVSLLQNRMRGLQI 219
            HFLSFPWCVYDKL QIK++  ++ R++    S+ +   RGL +
Sbjct: 1090 HFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1250 bits (3234), Expect = 0.0
 Identities = 630/997 (63%), Positives = 759/997 (76%), Gaps = 5/997 (0%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPIY 3015
            LSY S  YKLEL Y++IW+I+L   +SQ S+ L+ Q+  AP++Y++    +  ++ DP+ 
Sbjct: 136  LSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLL 195

Query: 3014 NYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVEN 2835
            NYFKD+PDDQWVRT DF+ S+ IGQS  LCLELP+   LP+  + F +YKE + R  +E+
Sbjct: 196  NYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLES 255

Query: 2834 GFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRPN 2655
            G SYS NL LVPIV P   I++ +EILFK+N +VQNG + G  LD  FY LV PC     
Sbjct: 256  GSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMH-K 314

Query: 2654 AYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRS-KHINSPTISLDSDSGLVYVHRVQVT 2478
             YI+ ALE +  +   C+ P++WL E+Y  FSRS K+  SPTISLD   GLVYV RVQ+T
Sbjct: 315  VYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDE--GLVYVRRVQIT 372

Query: 2477 PSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRTA 2298
            PS+V+F GPEINVSNRVLR +   +D+FLRISFVDE+ EK+HS ++  R       RRT 
Sbjct: 373  PSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQARG------RRTG 426

Query: 2297 LYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRIR 2118
            +Y RILS L+NGI IG+K+FEFLAFSSSQLRENSAWMFAS     A  IR WMG+F +IR
Sbjct: 427  IYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIR 486

Query: 2117 NVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE--QSG--YVFSDGIGKISAEFAKKVA 1950
            NVAKYAARLGQSFSSSTETLSV   E  LIPDIE  + G  YVF DGIGKISAEFAKKVA
Sbjct: 487  NVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVA 546

Query: 1949 AKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQP 1770
            AKCRLKG  PSAFQIR  G+KGVVA+DPTSS KLSLRKSM K+ES+NTKLDVLA+SKYQP
Sbjct: 547  AKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQP 606

Query: 1769 CFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLRE 1590
            CFLNRQLITLLSTLG+ D  FEKK  E V  L+ +LTDP  A EA++LM PGE  N+L+E
Sbjct: 607  CFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKE 666

Query: 1589 LLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFV 1410
            +LLCGYKPDAEPF+SM+L+ FRAS+LLELRTKARIFV KGR+M+GCLDE+R+L YGQVFV
Sbjct: 667  MLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFV 726

Query: 1409 QVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVD 1230
            Q              F  +R     +++GK+IVAKNPCLHPGDVR+L AVNVP LHHMVD
Sbjct: 727  Q--------------FSGSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVD 772

Query: 1229 CVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIE 1050
            CVVFPQKG RPHPNECSGSDLDGD+YFV WDPEL+P +  +PM+Y+PA T +LDH+VTIE
Sbjct: 773  CVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIE 832

Query: 1049 EVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEI 870
            E+ EYFTNYIVNDSLGII+NAHT FAD+   KA    CL+LAKLFSIAVDFPKTGVPAEI
Sbjct: 833  EIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEI 892

Query: 869  PPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADM 690
            P  L+VKE+PDFMEK D+ +Y+S  +IGKL+R +K   P+   IK  T++   + YD DM
Sbjct: 893  PQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDM 952

Query: 689  EVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIG 510
            EV+GF ++++DAFF+K +YD+KLGNLMD+YG+KTEAEI+SG IMKMS+ FTK RDAE+I 
Sbjct: 953  EVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAESIS 1012

Query: 509  RAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHFLSF 330
             AV+ LRKEARSWF +K S          AKASAWYYVTYHHSYWG YNEG+ R HFLSF
Sbjct: 1013 MAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNEGMNRDHFLSF 1072

Query: 329  PWCVYDKLTQIKQKKISQRKTASQVSLLQNRMRGLQI 219
            PWCVYDKL QIK++K + R+     SL     RG  +
Sbjct: 1073 PWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1247 bits (3227), Expect = 0.0
 Identities = 632/997 (63%), Positives = 758/997 (76%), Gaps = 5/997 (0%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPIY 3015
            LSY S  YKLEL Y++IW+I+L   +SQ S+ L+ Q+  AP++Y++    +  ++ DP+ 
Sbjct: 136  LSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLL 195

Query: 3014 NYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVEN 2835
            NYFKD+PDDQWVRT DF+ S+ IGQS  L LELP+   LP+  + F +YKE + R  +E+
Sbjct: 196  NYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLES 255

Query: 2834 GFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRPN 2655
            G SYS NL LVPIV P   I++ +EILFK+N +VQNG + G  LD  FY LV PC     
Sbjct: 256  GSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMH-K 314

Query: 2654 AYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRS-KHINSPTISLDSDSGLVYVHRVQVT 2478
             YI+ ALE +  +   C+ P++WL E+Y  FSRS K+  SPTISLD   GLVYV RVQ+T
Sbjct: 315  VYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDE--GLVYVRRVQIT 372

Query: 2477 PSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRTA 2298
            PS+V+F GPEINVSNRVLR +   +D+FLRISFVDE+ EK+HS ++  R       RRT 
Sbjct: 373  PSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQARG------RRTG 426

Query: 2297 LYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRIR 2118
            +Y RILS L+NGI IG+K+FEFLAFSSSQLRENSAWMFAS     A  IR WMG+F +IR
Sbjct: 427  IYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIR 486

Query: 2117 NVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE--QSG--YVFSDGIGKISAEFAKKVA 1950
            NVAKYAARLGQSFSSSTETLSV   E  LIPDIE  + G  YVFSDGIGKISAEFAKKVA
Sbjct: 487  NVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVA 546

Query: 1949 AKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQP 1770
            AKCRLKG  PSAFQIR  G+KGVVA+DPTSS KLSLRKSM K+ES+NTKLDVLA+SKYQP
Sbjct: 547  AKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQP 606

Query: 1769 CFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLRE 1590
            CFLNRQLITLLSTLG+ D  FEKK  E V  L+ +LTDP  A EA++LM PGE  N+L+E
Sbjct: 607  CFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKE 666

Query: 1589 LLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFV 1410
            +LLCGYKPDAEPF+SM+L+ FRAS+LLELRTKARIFV KGR+M+GCLDE+R+L YGQVFV
Sbjct: 667  MLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFV 726

Query: 1409 QVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVD 1230
            Q              F  +R     +++GK+IVAKNPCLHPGDVR+L AVNVP LHHMVD
Sbjct: 727  Q--------------FSGSRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVD 772

Query: 1229 CVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIE 1050
            CVVFPQKG RPHPNECSGSDLDGD+YFV WDPEL+P +  +PM+Y+PA T +LDH+VTIE
Sbjct: 773  CVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIE 832

Query: 1049 EVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEI 870
            E+ EYFTNYIVNDSLGII+NAHT FAD+   KA    CL+LAKLFSIAVDFPKTGVPAEI
Sbjct: 833  EIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEI 892

Query: 869  PPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADM 690
            P  L+VKEYPDFMEK D+ +Y+S  +IGKL+R +K   P+   IK  T++   + YD DM
Sbjct: 893  PQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDM 952

Query: 689  EVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIG 510
            EV+GFE++++DAFF K +YD+KLGNLMD+YG+KTEAEI+ G IMKMS+ FTK RDAEAI 
Sbjct: 953  EVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRDAEAIS 1012

Query: 509  RAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHFLSF 330
             AV+ LRKEARSWF +K S          AKASAWYYVTYH SYWG YNEG+ R HFLSF
Sbjct: 1013 MAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSF 1072

Query: 329  PWCVYDKLTQIKQKKISQRKTASQVSLLQNRMRGLQI 219
            PWCVYDKL QIK++K + R+     SL     RGL +
Sbjct: 1073 PWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109


>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao]
          Length = 1109

 Score = 1240 bits (3209), Expect = 0.0
 Identities = 629/997 (63%), Positives = 763/997 (76%), Gaps = 5/997 (0%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPIY 3015
            LS+    Y+L+L Y++IW+I+LHR  +Q S++L+ Q+  AP++Y++  +++  ++ +P+ 
Sbjct: 136  LSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIYEKDVRSSGLVFENPLL 195

Query: 3014 NYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVEN 2835
            NYF DVPDDQWVRT DF+ SS IGQS  LCLELPY   LP+  + F +YKE + ++ +E+
Sbjct: 196  NYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRENFAYYKESEGKFVLES 255

Query: 2834 GFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRPN 2655
            G SYSRNL+LVPIV P  GI++ YEILFKIN +VQNG + G  LD  FY LV PC     
Sbjct: 256  GSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPALDANFYRLVNPCRI-DK 314

Query: 2654 AYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSK-HINSPTISLDSDSGLVYVHRVQVT 2478
             YI+ ALE +  +   CF P+KWL+EQY  +  SK +  SP ISLD   GLV V RVQ+T
Sbjct: 315  VYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISLDD--GLVNVRRVQIT 372

Query: 2477 PSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRTA 2298
            PS+V+F GPEINVSNRVLRH+   +D+FLRI+FVDE+ EK+HS  +L R       R T 
Sbjct: 373  PSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLLTR------NRITE 426

Query: 2297 LYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRIR 2118
            +Y RILS LKNGI IG K+FEFLAFSSSQLRENSAWMFAS     A  IR WMG+F +IR
Sbjct: 427  IYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAADIRTWMGEFSKIR 486

Query: 2117 NVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQS----GYVFSDGIGKISAEFAKKVA 1950
            NVAKYAARLGQSFSSSTETLSV   E ++I D+E       YVFSDGIGKISA+FAKKVA
Sbjct: 487  NVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSDGIGKISAKFAKKVA 546

Query: 1949 AKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQP 1770
            AKCRL G  PSAFQIR  G+KGVVAVDPTSS KLSLR SMSK+ES+NTKLDVLA+SKYQP
Sbjct: 547  AKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESENTKLDVLAWSKYQP 606

Query: 1769 CFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLRE 1590
            CFLNRQLITLLSTLG+ D  FE+K  E V  L+ ILTDP +A EA++LM PGE  N+L+E
Sbjct: 607  CFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKE 666

Query: 1589 LLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFV 1410
            +LLCGY+PDAEPF+SM+LQ FRAS+LLELRTK+RIFV  GR+M+GCLDE+R+L YGQVFV
Sbjct: 667  MLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFV 726

Query: 1409 QVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVD 1230
            QVS               +R     +++GK++VAKNPCLHPGDVR+L AVNVP LHHMVD
Sbjct: 727  QVSG--------------SRSEQRFIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVD 772

Query: 1229 CVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIE 1050
            CVVFPQKG RPHPNECSGSDLDGDIYFV WDPEL+P++   PM+Y+PAPT  L+H+VTIE
Sbjct: 773  CVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSPAPTKPLEHEVTIE 832

Query: 1049 EVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEI 870
            EV EYFTNYIVNDSLGIIANAHTVFAD+   KA   EC  LAKLFSIAVDFPKTGVPAEI
Sbjct: 833  EVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSIAVDFPKTGVPAEI 892

Query: 869  PPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADM 690
            P  L+VKEYPDFMEK D+ TY+S  +IGKL+R +K+  P+   I++ T++   + YD DM
Sbjct: 893  PQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSLTRERLERFYDPDM 952

Query: 689  EVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIG 510
            EVDG+E++++DAF+ K  YD+KLGNLM++YGIKTEAEI+SG IMKMS+ FTK RDAEAIG
Sbjct: 953  EVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKMSRSFTKQRDAEAIG 1012

Query: 509  RAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHFLSF 330
             AV+ LRKEARSWF +K +          AKASAWY+VTYH SYWG YNEG+ R HFLSF
Sbjct: 1013 VAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYWGLYNEGMNRNHFLSF 1072

Query: 329  PWCVYDKLTQIKQKKISQRKTASQVSLLQNRMRGLQI 219
            PWCVYDKL  IK KK++ R+ +   SL     RGL++
Sbjct: 1073 PWCVYDKLILIK-KKVTSRRNSRLSSLESLFARGLRL 1108


>ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polymerase 1-like [Setaria
            italica]
          Length = 1123

 Score = 1231 bits (3185), Expect = 0.0
 Identities = 621/995 (62%), Positives = 758/995 (76%), Gaps = 7/995 (0%)
 Frame = -3

Query: 3197 YLSYGSCSYKLELAYDSIWEIQLHR--SYSQRSQFLVFQVVAAPKLYKESSQNARSIYGD 3024
            YLSY    YKLEL+Y+SIWE+QLHR  +Y  +++FL+FQV AAPK+Y+   + +  +Y D
Sbjct: 139  YLSYNLIKYKLELSYESIWEMQLHRPPAYLSQTKFLLFQVQAAPKIYELLPRRSGLMYED 198

Query: 3023 PIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYA 2844
            P +N+F+D  D+QW RTIDF+PS+SIGQS  LCLE+P + +LP+I  YF +YKE +  + 
Sbjct: 199  PFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEVPQQCELPNIADYFVYYKEHNLDFE 258

Query: 2843 VENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPS 2664
             + G+SYS     VPIV+ P  IEV YEILFKIN++VQNG L G TLD  F+ LV P   
Sbjct: 259  CQKGYSYSCGNSFVPIVKSPDYIEVPYEILFKINHLVQNGTLSGPTLDDNFFCLVSP-KH 317

Query: 2663 RPNAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHINSPTISLDSDSGLVYVHRVQ 2484
             P  +I+RAL  MS +  +C  P  WL  QY+K  +S++    +  +  D GLVYVHRVQ
Sbjct: 318  VPIDHIKRALLKMSYLKSTCLNPTNWLALQYSKIRKSRYALQRSSGISLDDGLVYVHRVQ 377

Query: 2483 VTPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERR 2304
            VTP+KV+FYGPEINVSNRV+RH+   +D+FLRISFVDED EK+ S  +  R+ S    RR
Sbjct: 378  VTPAKVYFYGPEINVSNRVVRHFSADLDNFLRISFVDEDCEKLRSVDLSPRSASGNDARR 437

Query: 2303 TALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRR 2124
            TALY R+LS+L NGI+IG K FEFLAFSSSQLR+NSAWMFAS     A  IR+WMGDFR 
Sbjct: 438  TALYNRVLSVLSNGISIGGKHFEFLAFSSSQLRDNSAWMFASRPGLTASDIRKWMGDFRN 497

Query: 2123 IRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDI----EQSGYVFSDGIGKISAEFAKK 1956
            IRNVAKYAARLGQSFSSSTETL V  +E + IPDI    + + Y+FSDGIGKISA FA +
Sbjct: 498  IRNVAKYAARLGQSFSSSTETLKVPRYEVEEIPDITDITDGTEYIFSDGIGKISANFALE 557

Query: 1955 VAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKY 1776
            VA KC+LK   PS FQIRY GYKGVVA+DP S+ KLSLRKSMSKF+S+N  LDVLAYSKY
Sbjct: 558  VAMKCKLKRFAPSVFQIRYGGYKGVVAIDPASNRKLSLRKSMSKFQSENITLDVLAYSKY 617

Query: 1775 QPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANML 1596
            QPCFLNRQLITLLSTLG+   +FE K EEAV  L+ ++T+P+ A EA++LM  GE  N++
Sbjct: 618  QPCFLNRQLITLLSTLGVSGTVFELKQEEAVRQLNRMVTEPQAASEAIELMPMGEVTNVV 677

Query: 1595 RELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQV 1416
            +ELL CGY+PD EP++SMLLQ FRAS+LLEL+TK+RIF+P+GRAM+GCLDE+R+LKYGQV
Sbjct: 678  KELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFIPQGRAMMGCLDETRTLKYGQV 737

Query: 1415 FVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHM 1236
            F+Q S             +   +H   V+ GK++VAKNPCLHPGD+R+L AV+VP+LHHM
Sbjct: 738  FIQAS-------------YCADDHRKFVVTGKVVVAKNPCLHPGDIRVLHAVDVPYLHHM 784

Query: 1235 VDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVT 1056
             DCVVFPQ+G RPHPNECSGSDLDGDIYFVSWD  L+P+RM EPM+Y PAP   LDHDVT
Sbjct: 785  FDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDQTLIPSRMVEPMDYTPAPADILDHDVT 844

Query: 1055 IEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPA 876
            IEE+ EYFTNYIVN+SLGIIANAH VFADK +LKAE   C+KLAKLFS+AVDFPKTGVPA
Sbjct: 845  IEEIQEYFTNYIVNESLGIIANAHVVFADKERLKAESLPCIKLAKLFSVAVDFPKTGVPA 904

Query: 875  EIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDA 696
             IPP L VKEYPDFMEK D+VTY+S G+IG+LYR IK+H P    IK FT+ VA QSYD 
Sbjct: 905  LIPPELHVKEYPDFMEKLDKVTYKSSGVIGRLYREIKKHTP---HIKHFTRDVARQSYDT 961

Query: 695  DMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEA 516
            D+ VDG+E+++++A  FK EYDFKLGNLMDHYGIK+EAEIISG I+KM+K FTK+ DA+A
Sbjct: 962  DLIVDGYEDYISEAVEFKEEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKSSDADA 1021

Query: 515  IGRAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHF 339
            I  AV+ LRKEARSWF +  +           AKASAWY+VTYH  YWG YNEG  RPH 
Sbjct: 1022 IRMAVRSLRKEARSWFNEMSTGEDGIGQDAIEAKASAWYHVTYHPQYWGSYNEGYDRPHL 1081

Query: 338  LSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRM 234
            +SFPWCVYD+L  IKQ++   RK    ++ L N M
Sbjct: 1082 ISFPWCVYDRLLCIKQRRNFLRKMEPDLTSLLNNM 1116


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1229 bits (3181), Expect = 0.0
 Identities = 630/1002 (62%), Positives = 758/1002 (75%), Gaps = 8/1002 (0%)
 Frame = -3

Query: 3197 YLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPI 3018
            +LS+GS  YKLEL+Y++IW+IQL     Q ++FL+ Q++ AP++Y++           P+
Sbjct: 136  FLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIYEKDV---------PV 186

Query: 3017 YNY-FKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAV 2841
             +Y FK+ PDDQWVR IDF+PS  IGQS ALCLELPY   LP+  + F +YKE D ++ +
Sbjct: 187  LSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFIL 246

Query: 2840 ENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSR 2661
            E+G SYS NL LVPI+ PP G  + ++ILFKIN +VQNG L G TLD  F+ LV P    
Sbjct: 247  ESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDP-ERF 305

Query: 2660 PNAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHINSPTISLDSDSGLVYVHRVQV 2481
            P ++IE ALE +  +   C+ P +WL EQY  + +     SP ISLD+  GLVYV RVQ+
Sbjct: 306  PISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPAISLDT--GLVYVRRVQI 363

Query: 2480 TPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRT 2301
            TP KV+F GPE+NVSNRVLR+Y   +D+FLR+SF+DE+ EK+HS  I  R    G  RRT
Sbjct: 364  TPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKEG--RRT 421

Query: 2300 ALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRI 2121
             +Y RILSIL+NGI IG KKF+FLAFSSSQLR+NSAWMFAS     A  IR WMGDF +I
Sbjct: 422  GVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQI 481

Query: 2120 RNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE----QSGYVFSDGIGKISAEFAKKV 1953
            RNVAKYAARLGQSFSSS ETL V   E + IPDIE    ++ YVFSDGIGKIS + A +V
Sbjct: 482  RNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRV 541

Query: 1952 AAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQ 1773
            A KC  K S PSAFQIRY GYKGVVAVDPTSS KLSLRKSM K+ES NT LDVLA+SKYQ
Sbjct: 542  AIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQ 601

Query: 1772 PCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLR 1593
            P FLNRQLITLLSTLG+ D +FEKK   AV  LD IL DP  A EA++LM PGE  N+L+
Sbjct: 602  PSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLK 661

Query: 1592 ELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVF 1413
            E+L+CGYKPDAEPF+SM+LQ FRA++LLELRTK RIFVP GR+M+GCLDE+R+L+YG+VF
Sbjct: 662  EMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVF 721

Query: 1412 VQVSCFENSRFHNNGLFF--FNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHH 1239
            VQ+S     +   + L F      H   +LEGKI+VAKNPCLHPGDVR+L AVNVP LHH
Sbjct: 722  VQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHH 781

Query: 1238 MVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDV 1059
            MVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD +L+P +   PM+Y PAPT  LDHDV
Sbjct: 782  MVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDV 841

Query: 1058 TIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVP 879
             IEEV EYFTNYIVNDSLGIIANAHTVFADK   KA C  C +LAKLFSIAVDFPKTGVP
Sbjct: 842  MIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVP 901

Query: 878  AEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYD 699
            AEIP  L+VKEYPDFMEK D+ TYES+ +IGKL+R +K+  P    I++FT+ VA QSYD
Sbjct: 902  AEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYD 961

Query: 698  ADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAE 519
             DMEV GFE++++DAF++K EYD+KLGNLMD+YGIKTE+EI+SG+IM+MSK F + +DAE
Sbjct: 962  PDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAE 1021

Query: 518  AIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHF 339
            AIG AVK LRKEAR+WF    S          AKASAWY+VTYH  YWGCYNEG+ R HF
Sbjct: 1022 AIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHF 1081

Query: 338  LSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRM-RGLQIG 216
            LSFPWCVYDKL   K+KK+S R  +  +S L+ R+ +GL++G
Sbjct: 1082 LSFPWCVYDKLIHTKRKKMSGR--SLHLSSLERRLSQGLRLG 1121


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score = 1227 bits (3175), Expect = 0.0
 Identities = 619/1000 (61%), Positives = 757/1000 (75%), Gaps = 6/1000 (0%)
 Frame = -3

Query: 3197 YLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPI 3018
            YL+YG   Y+L+L Y+++W+I+LHR   Q +++L+ Q++ AP++Y++  + +  I  +P+
Sbjct: 136  YLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRVYEKEVRISFDILENPL 195

Query: 3017 YNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVE 2838
            +NYFKD PDDQWVR  DF+ S  IG S AL LELPY  DLPD+ + F +YKE + R+ +E
Sbjct: 196  FNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLRENFVYYKESEERFILE 255

Query: 2837 NGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRP 2658
            +G S+SRNLDLVPIV PPSGI + +E +FKIN ++QNG L G TLD +FY LV P   R 
Sbjct: 256  SGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPTLDVDFYRLVDPQRIRN 315

Query: 2657 NAYIERALEMMSVMDYSCFAPAKWLIEQYAKF-SRSKHINSPTISLDSDSGLVYVHRVQV 2481
               I  ALE +  +    + PA WL EQY K+ +  +    P I+LDS  GLVYV RVQV
Sbjct: 316  VDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAIALDS--GLVYVRRVQV 373

Query: 2480 TPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRT 2301
            TPSKV+F GPEINVSNRVLR Y   +D FLR+SFVDE+ EK+ S  +  R  +   +RRT
Sbjct: 374  TPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTDLSPRTSNANEDRRT 433

Query: 2300 ALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRI 2121
             +Y RILS+L+NGI IG +KFEFLAFSSSQLR+NS WMFA+ +   A +IR+W+GDFR I
Sbjct: 434  GIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHSADTIRQWIGDFRSI 493

Query: 2120 RNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE-QSG---YVFSDGIGKISAEFAKKV 1953
            RNVAKYAARLGQSF SSTETL+V+  E ++I DIE + G   YVFSDGIGKIS+ FAK+V
Sbjct: 494  RNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVFSDGIGKISSTFAKRV 553

Query: 1952 AAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQ 1773
            A KC LK  VPSAFQIRY GYKGVVAVDPTSS KLSLRKSM K+ES+  KLDVLAYSK Q
Sbjct: 554  AKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYESELHKLDVLAYSKLQ 613

Query: 1772 PCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLR 1593
             C+LNRQLITLLSTLG+ D +FEKK  EAV  L+ IL DP RA EA+ LM  GET N+L+
Sbjct: 614  HCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREALDLMSAGETTNILK 673

Query: 1592 ELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVF 1413
            ELL CGY+P+AEPF+SM+LQAFRAS+L ELRTK RI +P GRAM+GCLDE R+L+YG+VF
Sbjct: 674  ELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMGCLDEMRTLEYGEVF 733

Query: 1412 VQVSCFENSRFHNNGLFFFNR-EHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHM 1236
            VQ S   +  F  +             ++ G+++VAKNPCLHPGDVR+L AVNVP LHHM
Sbjct: 734  VQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPGDVRVLRAVNVPALHHM 793

Query: 1235 VDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVT 1056
            VDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL+P +  EPM+Y+PAPT  LDHDV 
Sbjct: 794  VDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMDYSPAPTTRLDHDVR 853

Query: 1055 IEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPA 876
            IEEV EYFTNYIVNDSLGIIANAHT FADK   KA    C++LA+LFSIAVDFPKTGVPA
Sbjct: 854  IEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELARLFSIAVDFPKTGVPA 913

Query: 875  EIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDA 696
             IP  L VKEYPDFMEK ++ TYES+ +IGKL+R +K+  P+   +  FTK+VA +SYD 
Sbjct: 914  VIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSLHFFTKEVASRSYDP 973

Query: 695  DMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEA 516
            DME DGFE++++DAF++K  YD+KLGNL+D+YGIK+EAEII G+IM+MSK FTK RDAE+
Sbjct: 974  DMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIMRMSKSFTKRRDAES 1033

Query: 515  IGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHFL 336
            I  AV+ LRKEAR+WF +K S          AKASAWYYVTYHHSYWGCYNEG+ R H+L
Sbjct: 1034 INMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHSYWGCYNEGMNRDHYL 1093

Query: 335  SFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMRGLQIG 216
            SFPWCVYDKL QIK+ K S R++    SL +   R L +G
Sbjct: 1094 SFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHLG 1133


>gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
          Length = 1115

 Score = 1222 bits (3162), Expect = 0.0
 Identities = 625/991 (63%), Positives = 755/991 (76%), Gaps = 3/991 (0%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPIY 3015
            L Y S  YKLEL+Y+SIWEIQLHR    + +FL+ QV AAPK+Y+++ + + S+Y DP++
Sbjct: 141  LIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAAPKIYEQNIRLSGSMYDDPLF 200

Query: 3014 NYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVEN 2835
            NYF+D  DDQW RT DF+PS+SIGQS  LCLELP+   LP+I +YF +Y+  +  + ++ 
Sbjct: 201  NYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYLPNIREYFVYYEVHNDIFNLQP 260

Query: 2834 GFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRPN 2655
            G+SYS N   VP+V+     +V YEILFKIN++VQNG L G TLD  FY LV P   R +
Sbjct: 261  GYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYERID 320

Query: 2654 AYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHINSPTISLDSDSGLVYVHRVQVTP 2475
              I+RALE MS +  +C  P  WL EQY K  RS+ + SP I+LD D GLVYV+RVQ+TP
Sbjct: 321  R-IKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSRVLTSPNITLDDD-GLVYVYRVQITP 378

Query: 2474 SKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRTAL 2295
            +KV+FYGPEINVSNRV+R+Y   +D+FLRISFVDED EK+ S  + +R+    + RRTAL
Sbjct: 379  AKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRSTDLSQRSAPGNNTRRTAL 438

Query: 2294 YWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRIRN 2115
            Y R+LS+L NGITIG K F+FLAFSSSQLR+NSAWMFAS     A  IREWMG+FR IRN
Sbjct: 439  YNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASRPGLSASDIREWMGNFRNIRN 498

Query: 2114 VAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGYVFSDGIGKISAEFAKKVAAKCR 1938
            VAKYAARLGQSFSSSTETL V  +E +  PD+   + YVFSDGIG ISA+FA +V+ KC 
Sbjct: 499  VAKYAARLGQSFSSSTETLKVHKYEVKEAPDVTNGTEYVFSDGIGTISADFADEVSKKCN 558

Query: 1937 LKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQPCFLN 1758
            L    PSAFQIRY GYKGVVA+DPTS  KLSLRKSMSKF+S N  LDVLAYSKYQPCFLN
Sbjct: 559  LTRFTPSAFQIRYGGYKGVVAIDPTSQWKLSLRKSMSKFQSDNITLDVLAYSKYQPCFLN 618

Query: 1757 RQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLRELLLC 1578
            RQLITLLSTLG+ID IFE K +EAV  L+ ++ +P+ A++A++LM  GE  N+++ELLLC
Sbjct: 619  RQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAIDAIELMPMGEITNIVKELLLC 678

Query: 1577 GYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFVQVSC 1398
            GY+PD EP+VSMLLQ FRAS+LLEL+T++RIFVPKGRAM+GCLDE+R+LKYGQVF+Q S 
Sbjct: 679  GYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMMGCLDETRTLKYGQVFIQASN 738

Query: 1397 FENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVDCVVF 1218
              + R  +             V+ GK+IVAKNPC+HPGD+RIL+AV+ P L HMV+CVVF
Sbjct: 739  SADDRGKS-------------VVTGKVIVAKNPCIHPGDIRILQAVHSPLLGHMVNCVVF 785

Query: 1217 PQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIEEVME 1038
            PQ G RPHPNECSGSDLDGDIYFVSWDP+L+P RM  PM+Y PAPT  LDHDV IEEV E
Sbjct: 786  PQLGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHE 845

Query: 1037 YFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEIPPTL 858
            YFTNYIVN+SLGIIANAH VFAD+  LKAE  +C+KLA+LFSIAVD+PKTGVPA+IP  L
Sbjct: 846  YFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAELFSIAVDYPKTGVPAQIPHEL 905

Query: 857  QVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADMEVDG 678
             VKEYPDFMEK DR TY S+G+IGKLYR IK+  P    I+ FTK VA  SYD D+ VDG
Sbjct: 906  HVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNP---HIRHFTKDVATLSYDTDLIVDG 962

Query: 677  FEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIGRAVK 498
            +++++ +A +FK EYDFKLGNLM+HYGI +EAEIISG I+KM+K FTK  DA+AI  AVK
Sbjct: 963  YQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSDADAIRLAVK 1022

Query: 497  VLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGL-KRPHFLSFPW 324
             LRKEARSWF +  S           AKASAWY+VTYH  YWGCYN+G   RPH +SFPW
Sbjct: 1023 SLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHPQYWGCYNKGYDHRPHLISFPW 1082

Query: 323  CVYDKLTQIKQKKISQRKTASQVSLLQNRMR 231
            CVYDKL  IKQKK   RK       LQNRMR
Sbjct: 1083 CVYDKLILIKQKKNIARKMLD----LQNRMR 1109


>gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score = 1220 bits (3156), Expect = 0.0
 Identities = 625/991 (63%), Positives = 754/991 (76%), Gaps = 3/991 (0%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPIY 3015
            L Y S  YKLEL+Y+SIWEIQLHR    + +FL+ QV AAPK+Y+++ + + S+Y DP++
Sbjct: 141  LIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQAAPKIYEQNIRLSGSMYDDPLF 200

Query: 3014 NYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVEN 2835
            NYF+D  DDQW RT DF+PS+SIGQS  L LELP+   LP+I +YF +Y+  +  + ++ 
Sbjct: 201  NYFRDDTDDQWTRTTDFTPSASIGQSYILSLELPHICYLPNIREYFVYYEVHNDIFNLQP 260

Query: 2834 GFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRPN 2655
            G+SYS N   VP+V+     +V YEILFKIN++VQNG L G TLD  FY LV P   R +
Sbjct: 261  GYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYERID 320

Query: 2654 AYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHINSPTISLDSDSGLVYVHRVQVTP 2475
              I+RALE MS +  +C  P  WL EQY K  RS+ + SP I+LD D GLVYV+RVQ+TP
Sbjct: 321  R-IKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSRVLTSPNITLDDD-GLVYVYRVQITP 378

Query: 2474 SKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRTAL 2295
            +KV+FYGPEINVSNRV+R+Y   +D+FLRISFVDED EK+ S  + +R+    + RRTAL
Sbjct: 379  AKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEKLRSTDLSQRSAPGNNTRRTAL 438

Query: 2294 YWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRIRN 2115
            Y R+LS+L NGITIG K F+FLAFSSSQLR+NSAWMFAS     A  IREWMG+FR IRN
Sbjct: 439  YNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASRPGLSASDIREWMGNFRNIRN 498

Query: 2114 VAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGYVFSDGIGKISAEFAKKVAAKCR 1938
            VAKYAARLGQSFSSSTETL V  +E +  PD+   + YVFSDGIG ISA+FA +V+ KC 
Sbjct: 499  VAKYAARLGQSFSSSTETLKVHKYEVKEAPDVTNGTEYVFSDGIGTISADFADEVSKKCN 558

Query: 1937 LKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQPCFLN 1758
            L    PSAFQIRY GYKGVVA+DPTS  KLSLRKSMSKF+S N  LDVLAYSKYQPCFLN
Sbjct: 559  LTRFTPSAFQIRYGGYKGVVAIDPTSQWKLSLRKSMSKFQSDNITLDVLAYSKYQPCFLN 618

Query: 1757 RQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLRELLLC 1578
            RQLITLLSTLG+ID IFE K +EAV  L+ ++ +P+ A++A++LM  GE  N+++ELLLC
Sbjct: 619  RQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAIDAIELMPMGEITNIVKELLLC 678

Query: 1577 GYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFVQVSC 1398
            GY+PD EP+VSMLLQ FRAS+LLEL+T++RIFVPKGRAM+GCLDE+R+LKYGQVF+Q S 
Sbjct: 679  GYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMMGCLDETRTLKYGQVFIQASN 738

Query: 1397 FENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVDCVVF 1218
              + R  +             V+ GK+IVAKNPC+HPGD+RIL+AV+ P L HMV+CVVF
Sbjct: 739  SADDRGKS-------------VVTGKVIVAKNPCIHPGDIRILQAVHSPLLGHMVNCVVF 785

Query: 1217 PQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIEEVME 1038
            PQ G RPHPNECSGSDLDGDIYFVSWDP+L+P RM  PM+Y PAPT  LDHDV IEEV E
Sbjct: 786  PQLGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHE 845

Query: 1037 YFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEIPPTL 858
            YFTNYIVN+SLGIIANAH VFAD+  LKAE  +C+KLA+LFSIAVD+PKTGVPA+IP  L
Sbjct: 846  YFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAELFSIAVDYPKTGVPAQIPHEL 905

Query: 857  QVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADMEVDG 678
             VKEYPDFMEK DR TY S+G+IGKLYR IK+  P    I+ FTK VA  SYD D+ VDG
Sbjct: 906  HVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNP---HIRHFTKDVATLSYDTDLIVDG 962

Query: 677  FEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIGRAVK 498
            +++++ +A +FK EYDFKLGNLM+HYGI +EAEIISG I+KM+K FTK  DA+AI  AVK
Sbjct: 963  YQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCILKMAKNFTKKSDADAIRLAVK 1022

Query: 497  VLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGL-KRPHFLSFPW 324
             LRKEARSWF +  S           AKASAWY+VTYH  YWGCYNEG   RPH +SFPW
Sbjct: 1023 SLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHPQYWGCYNEGYDHRPHLISFPW 1082

Query: 323  CVYDKLTQIKQKKISQRKTASQVSLLQNRMR 231
            CVYDKL  IKQKK   RK       LQNRMR
Sbjct: 1083 CVYDKLILIKQKKNIARKMLD----LQNRMR 1109


>ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
            gi|241934151|gb|EES07296.1| hypothetical protein
            SORBIDRAFT_04g028630 [Sorghum bicolor]
          Length = 1114

 Score = 1219 bits (3155), Expect = 0.0
 Identities = 611/974 (62%), Positives = 745/974 (76%), Gaps = 3/974 (0%)
 Frame = -3

Query: 3197 YLSYGSCSYKLELAYDSIWEIQLHR--SYSQRSQFLVFQVVAAPKLYKESSQNARSIYGD 3024
            YLSY    YKLEL+Y+SIWEIQLHR  +Y  R++FL+ QV AAPK+Y+   +    +Y D
Sbjct: 140  YLSYNFIKYKLELSYESIWEIQLHRPPAYRSRTKFLLIQVQAAPKIYELLPRRPGLMYED 199

Query: 3023 PIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYA 2844
            P +N+F D  D+QW RTIDF+PS SIGQS   CLE+P + +LP I  YF +YKE +  + 
Sbjct: 200  PFFNWFMDDTDEQWTRTIDFTPSVSIGQSSIFCLEVPQQCELPRIGDYFVYYKERNLDFE 259

Query: 2843 VENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPS 2664
              NG+SYS    LVPIV+ P  IEV YEILFKIN++VQNG L G T+D  F+  V P   
Sbjct: 260  CRNGYSYSCGNCLVPIVKSPDYIEVPYEILFKINHLVQNGTLSGPTVDHSFFCHVSP-EF 318

Query: 2663 RPNAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHINSPTISLDSDSGLVYVHRVQ 2484
             P  +I+RAL  MS +  +C  P  WL  QY++  RS+H +  + ++  D GLVYVHRVQ
Sbjct: 319  EPIDHIKRALLKMSYLKSTCLNPTNWLSVQYSRIRRSRHASQRSSNISLDDGLVYVHRVQ 378

Query: 2483 VTPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERR 2304
            VTP+KV+FYGPEINVSNRV+R++   +D+FLRISFVDED EK+ S  +  R+ S    RR
Sbjct: 379  VTPAKVYFYGPEINVSNRVVRNFSADIDNFLRISFVDEDCEKLRSLDLSPRSTSGNDARR 438

Query: 2303 TALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRR 2124
            TALY R+LS+L NGI IG K FEFLAFSSSQLR+NSAWMFAS     A  IR+WMGDFR 
Sbjct: 439  TALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWMGDFRD 498

Query: 2123 IRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGYVFSDGIGKISAEFAKKVAA 1947
            IRNVAKYAARLGQSFSSSTETL V  HE + IPDI+  + Y+FSDG+GKISA FAK+VA 
Sbjct: 499  IRNVAKYAARLGQSFSSSTETLIVRKHEVEQIPDIKNGTNYIFSDGVGKISANFAKEVAM 558

Query: 1946 KCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQPC 1767
            KC+L+   PS FQIRY GYKGVVAVDP S+ KLSLR+SM KF+S+N  LDVLAYSKYQPC
Sbjct: 559  KCKLRRFAPSVFQIRYGGYKGVVAVDPRSNRKLSLRRSMLKFQSENITLDVLAYSKYQPC 618

Query: 1766 FLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLREL 1587
            FLNRQLITLLSTLG+ D +FE K +EA+  L+ ++T+P+ A EAV+LM  GE  N+++EL
Sbjct: 619  FLNRQLITLLSTLGVGDNVFELKQKEAIKQLNRMVTEPQAAREAVELMPMGEVTNVVKEL 678

Query: 1586 LLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFVQ 1407
            L CGY+PD EP++SMLLQ FRAS+LLEL+TK+RIF+ +GRAM+GCLDE+R+LKYGQVF+Q
Sbjct: 679  LSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETRTLKYGQVFIQ 738

Query: 1406 VSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVDC 1227
             S             +   +H  +V+ GK++VAKNPCLHPGD+R+L+AV+VP LHHM DC
Sbjct: 739  AS-------------YCADDHHKIVVTGKVVVAKNPCLHPGDIRVLQAVDVPSLHHMFDC 785

Query: 1226 VVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIEE 1047
            VVFPQ+G RPHPNECSGSDLDGDIYFVSWDP+L+P+ M +PM+Y PAP   LDHDVTIEE
Sbjct: 786  VVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPSHMEDPMDYTPAPAETLDHDVTIEE 845

Query: 1046 VMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEIP 867
            + EYFTNYIVN+SLGIIANAH V+ADK  LKA+   CL+LAKLFSIAVDFPKTGVPA IP
Sbjct: 846  IQEYFTNYIVNESLGIIANAHVVYADKEDLKAKSRPCLELAKLFSIAVDFPKTGVPALIP 905

Query: 866  PTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADME 687
            P L VKEYPDFMEK D+ TYESKG+IGKLYR IK+H P    I+ FT++VA +SYD D+ 
Sbjct: 906  PELHVKEYPDFMEKLDKATYESKGVIGKLYREIKKHTP---HIRHFTREVAKRSYDTDLI 962

Query: 686  VDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIGR 507
            VDG+E+++ +A  FK EYDF+LGNLMDHYGIK+EAEIISG  +KM+K FTK+ DA+AI  
Sbjct: 963  VDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCFLKMAKNFTKSSDADAIRM 1022

Query: 506  AVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHFLSFP 327
            AV+ LRKEARSWF +  S          AKASAWY+VTY   YWG YNEG  RPH +SFP
Sbjct: 1023 AVRSLRKEARSWFNEM-STSEDDQDATEAKASAWYHVTYDPQYWGNYNEGYDRPHLISFP 1081

Query: 326  WCVYDKLTQIKQKK 285
            WCVYDKL  IKQ++
Sbjct: 1082 WCVYDKLVIIKQRR 1095


>gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops tauschii]
          Length = 1144

 Score = 1202 bits (3110), Expect = 0.0
 Identities = 627/1020 (61%), Positives = 756/1020 (74%), Gaps = 32/1020 (3%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFL----------------VFQVVAAPKLY 3063
            L Y S  YKLEL+Y+SIWEIQLHR    + +FL                V QV AAPK+Y
Sbjct: 141  LIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQLRDFDNLSWRNVSVSQVQAAPKIY 200

Query: 3062 KESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHK 2883
            +++ + + S+Y DP++NYF+D  DDQW RT DF+PS+SIGQS  LCLELP+   LP+I +
Sbjct: 201  EQNIRRSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYLPNIRE 260

Query: 2882 YFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTL 2703
            YF +Y+  D  + ++ G SYS N   VP+V+     +V YEILFKIN++VQNG L G TL
Sbjct: 261  YFVYYEVHDDVFHLQRGHSYSSNTCFVPVVKSHHFTDVPYEILFKINHLVQNGTLSGPTL 320

Query: 2702 DREFYNLVCPCPSRPNAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKH-INSPTIS 2526
            D  FY LV P     + +I+RALE MS +  +C  P KWL EQY K  RS++ +  P I+
Sbjct: 321  DDNFYRLVSPGYECID-HIKRALEKMSYLKKTCLNPTKWLSEQYKKKRRSRYMLKLPNIT 379

Query: 2525 LDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSN 2346
            LD D GLVYV+RVQ+TP+KV+FYGPEINVSNRV+RHY   +D+FLRISFVDED EK+ S 
Sbjct: 380  LDDD-GLVYVYRVQITPAKVYFYGPEINVSNRVVRHYAADLDNFLRISFVDEDCEKLRST 438

Query: 2345 HILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMF 2166
             + +R+    + RRTALY R+LS+L NGITIG K F+FLAFSSSQLR+NSAWMFAS    
Sbjct: 439  DLSQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFASRPGL 498

Query: 2165 CAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGYVFSDG 1989
             A  IREWMGDFR IRNVAKYAARLGQSFSSSTETL V  +E +  PD+   + YVFSDG
Sbjct: 499  SASDIREWMGDFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVKEAPDVTNGTKYVFSDG 558

Query: 1988 IGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKN 1809
            IG ISA+FA +V+ KC L    PSAFQIRY GYKGVVA+DPTS  KLSLRKSMSKF+S+N
Sbjct: 559  IGTISADFADEVSKKCNLTRFTPSAFQIRYGGYKGVVAIDPTSRWKLSLRKSMSKFQSEN 618

Query: 1808 TKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQ 1629
              LDVLAYSKYQPCFLNRQLITLLSTLG+ D IFE K +EAV  L+ ++ +P+ A++A++
Sbjct: 619  ITLDVLAYSKYQPCFLNRQLITLLSTLGVRDSIFELKQQEAVKQLNRMVAEPQAAIDAIE 678

Query: 1628 LMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCL 1449
            LM  GE  N+++ELLLCGY+PD EP+VSMLLQ FRAS+LLEL+T++RIFVPKGRAM+GCL
Sbjct: 679  LMPMGEVTNVVKELLLCGYQPDLEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAMMGCL 738

Query: 1448 DESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRIL 1269
            DE+R+LKYGQVF+Q S   + R  +             ++ GK++VAKNPC+HPGD+RIL
Sbjct: 739  DETRTLKYGQVFIQASNSADDRGKS-------------IVTGKVVVAKNPCIHPGDIRIL 785

Query: 1268 EAVNVPHLHHMVDCVVFPQKGKR------------PHPNECSGSDLDGDIYFVSWDPELM 1125
            +AV  P L HMV+CVVFPQ G R            PHPNECSGSDLDGDIYFVSWDP+L+
Sbjct: 786  QAVQSPLLGHMVNCVVFPQLGPRQVFSNAFFYVFQPHPNECSGSDLDGDIYFVSWDPDLI 845

Query: 1124 PARMAEPMEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAEC 945
            P RM  PM+Y PAPT  LDHDV IEEV EYFTNYIVN+SLGIIANAH VFAD+  LKAE 
Sbjct: 846  PTRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNYIVNESLGIIANAHVVFADREILKAES 905

Query: 944  HECLKLAKLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIK 765
              C+KLA+LFSIAVD+PKTGVPA+IPP L VKEYPDFMEK DR TY S+GIIGKLYR IK
Sbjct: 906  TPCIKLAELFSIAVDYPKTGVPAQIPPELHVKEYPDFMEKLDRATYVSEGIIGKLYREIK 965

Query: 764  EHKPDCVQIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTE 585
            +  P    I  FTK VA +SYD D+ VDG+++++ +A +FK +YDFKLGNLM+HYGI +E
Sbjct: 966  KQNP---HIGHFTKDVARRSYDTDLIVDGYQDYITEAVWFKEQYDFKLGNLMEHYGINSE 1022

Query: 584  AEIISGNIMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASA 408
            AEIISG I+KM+  FTK  DA+AI  AVK LRKEARSWF +  S          +AKASA
Sbjct: 1023 AEIISGCILKMANNFTKKNDADAIRLAVKSLRKEARSWFSEMGSDESGDGHEASDAKASA 1082

Query: 407  WYYVTYHHSYWGCYNEGL-KRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMR 231
            WY+VTYH  YWGCYNEG   RPHF+SFPWCVYDKL QIK+KK   RK       LQNRMR
Sbjct: 1083 WYHVTYHPEYWGCYNEGYDHRPHFISFPWCVYDKLIQIKRKKNFVRKMLD----LQNRMR 1138


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score = 1202 bits (3109), Expect = 0.0
 Identities = 595/1002 (59%), Positives = 741/1002 (73%), Gaps = 9/1002 (0%)
 Frame = -3

Query: 3197 YLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPI 3018
            YL++    YKL+L Y++IW+IQL R  ++ +++LV Q+  AP+++++    +  IY  P+
Sbjct: 212  YLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIFQKPLSFSSDIYDSPL 271

Query: 3017 YNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVE 2838
            +NY+KD PD+QWVR+IDF+PS SIGQS +LCL LP    +P+I + F +YKE+   + ++
Sbjct: 272  FNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLK 331

Query: 2837 NGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRP 2658
             G S+S +L LVPIV PP  I++ Y+ILF++N +VQNG L+G TLD EFYNL+   PS  
Sbjct: 332  TGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPTLDTEFYNLLNGLPS-- 389

Query: 2657 NAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHINSPTISLDSDSGLVYVHRVQVT 2478
              ++ER+LE +S +   C  PAKWL EQY K+       SP  ++  + GLVYVHRVQVT
Sbjct: 390  -PFVERSLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPSPA-AISLEPGLVYVHRVQVT 447

Query: 2477 PSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRTA 2298
            PSKV+FYGPE+NVSNRVLR +   +D+FLRISF+DED   + S  + +R  S   E+ T 
Sbjct: 448  PSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRSTDLSKRMASGAEEKHTT 507

Query: 2297 LYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRIR 2118
            +Y R+LS LKNGI IG KKFEFLAFSSSQLR+NSAWMF+  +   A +IR+WMGDF  IR
Sbjct: 508  VYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPIDGITAANIRQWMGDFSGIR 567

Query: 2117 NVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQSGYVFSDGIGKISAEFAKKVAAKCR 1938
            NVAK AAR+GQSF SSTETL+V+  E + I DI+   YVFSDGIGKIS EFAKKVA KC 
Sbjct: 568  NVAKCAARMGQSFGSSTETLNVKPEEVERISDIKNGKYVFSDGIGKISLEFAKKVALKCG 627

Query: 1937 LKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQPCFLN 1758
                 PSAFQIRY GYKGVVAVDPTS  KLSLR SM K+ S NTKLDVLAYSK+QPCFLN
Sbjct: 628  CSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRKYSSNNTKLDVLAYSKFQPCFLN 687

Query: 1757 RQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLRELLLC 1578
            RQ+ITLLSTLG+ D +FE K ++AV  LD IL DPE A EA++LM PGE  N+L+E+L C
Sbjct: 688  RQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPESAFEALELMSPGENVNVLKEMLFC 747

Query: 1577 GYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFVQVSC 1398
            GY PD+EPF+SM+LQ FR  +L EL+TK RIF+P GR+M+GCLDE+  L+YGQVFVQ S 
Sbjct: 748  GYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGRSMMGCLDETGILEYGQVFVQFSA 807

Query: 1397 FENSRFHNNGLFFFNR---EHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVDC 1227
              N R H  GL   N    +    V+ GK+IVAKNPCLHPGDVRIL A++VP LHHMV+C
Sbjct: 808  IGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNPCLHPGDVRILTAIDVPALHHMVNC 867

Query: 1226 VVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIEE 1047
            VVFPQKGKRPHPNECSGSDLDGDIYFVSWDP L+P     PMEY PAP  +LDH+VTIEE
Sbjct: 868  VVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPCHQGTPMEYEPAPNNDLDHEVTIEE 927

Query: 1046 VMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEIP 867
            + EYFTNY++NDSLGIIANAHTVFADK  +KA+   C+ LA LFS+AVDFPKTGVPA+IP
Sbjct: 928  IEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTPCVDLANLFSVAVDFPKTGVPADIP 987

Query: 866  PTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADME 687
              L VKEYPDFM+K D+ TY+S+ +IGKL+R +K+  P    I +FTK VA++SYD DME
Sbjct: 988  QHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKDLPPHTSAITSFTKSVALKSYDLDME 1047

Query: 686  VDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIGR 507
            VDGFE +L+DA ++K EYDFKL  LMDHYGIKTEAEI+SGNI+ ++K FTK RDAEAI  
Sbjct: 1048 VDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEAEIVSGNILSLAKSFTKRRDAEAIAL 1107

Query: 506  AVKVLRKEARSWFKDKHS----XXXXXXXXXNAKASAWYYVTYHHSYWGCY--NEGLKRP 345
            A++ LRKE R WFK+K S              AKASAWY++TYH  YWG Y   +G  R 
Sbjct: 1108 AMRSLRKEVRGWFKEKRSVVDEGDYSLDDDVYAKASAWYHITYHPEYWGSYFEEDGRNRA 1167

Query: 344  HFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMRGLQI 219
            HF+SFPWC+YDKL  IK+ +I + + +   SL     R L +
Sbjct: 1168 HFISFPWCIYDKLIHIKRHRIGRGRNSRSSSLASTMERTLML 1209


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1202 bits (3109), Expect = 0.0
 Identities = 614/982 (62%), Positives = 743/982 (75%), Gaps = 7/982 (0%)
 Frame = -3

Query: 3197 YLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPI 3018
            +LS+GS  YKLEL+ ++IW+IQL     Q ++FL+ Q++ AP++Y++             
Sbjct: 135  FLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIYEKDVS---------A 185

Query: 3017 YNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVE 2838
             +YFK+ PDDQWVR IDF+PS SIGQS ALCLELP+   LP+  + F  YKE D ++ +E
Sbjct: 186  LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKENDRKFILE 245

Query: 2837 NGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRP 2658
            +G S+S NL LVPIV PP G  + ++ILFKIN +VQNG L G TLD  F+  V P   R 
Sbjct: 246  SGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDP--QRI 303

Query: 2657 N-AYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHINSPTISLDSDSGLVYVHRVQV 2481
            N ++IE ALE +  ++  C+ P +WL EQY  +   +   SP ISLD+  GLVYV RVQ+
Sbjct: 304  NISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISKQVAGSPAISLDT--GLVYVRRVQI 361

Query: 2480 TPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRT 2301
            TP KV+F GPE+NVSNRVLR+Y   +D+FLR+SF+DE+ EK+HS  I  R  + G  RRT
Sbjct: 362  TPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMSNEG--RRT 419

Query: 2300 ALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRI 2121
             +Y RILSIL+NGI IG KKF+FLA SSSQLR+NSAWMFAS     A  IR  MGDF +I
Sbjct: 420  GVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQI 479

Query: 2120 RNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ----SGYVFSDGIGKISAEFAKKV 1953
            RNVAKYAARLGQSFSSS ETL V  HE ++IPDIE     + YVFSDGIGKISAE A +V
Sbjct: 480  RNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRV 539

Query: 1952 AAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQ 1773
            A KC  K S PSAFQIRY GYKGVVAVDPTSS KLSLRKSM K+ES+NT LDVL++SKY+
Sbjct: 540  AIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYR 599

Query: 1772 PCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLR 1593
            PCFLNRQLITLLSTLG+ D +FEKK  EAV  LD IL DP RA EA++LM PGE  N+L+
Sbjct: 600  PCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILK 659

Query: 1592 ELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVF 1413
            E+L+CGYKPDAEPF+SM+LQ FRA++LLELRTK RIFVP GR+M+GCLDE+R+L+YG+VF
Sbjct: 660  EMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVF 719

Query: 1412 VQVSCFENSRFHNNGLFFFNR--EHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHH 1239
            VQ+S     +   + L F+     H   +LEGK++VAKNPCLHPGDVRIL AV+VP LHH
Sbjct: 720  VQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHH 779

Query: 1238 MVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDV 1059
            MVDCVVFPQKG RPHP+ECSGSDLDGDIYFV WD +L+P R   PM+Y PAPT  LDHDV
Sbjct: 780  MVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDV 839

Query: 1058 TIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVP 879
             IEEV EYFTNYI ND LGIIANAHTVFADK   KA C  C +LAKLFSIA++FPKTGVP
Sbjct: 840  MIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVP 899

Query: 878  AEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYD 699
            AEIP  L VKEYPDFMEK ++ TYES+ +IGKL+R +K+  P    +++FT+ VA+QSYD
Sbjct: 900  AEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYD 959

Query: 698  ADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAE 519
            ADMEVDGFE+++ DAF++K +YDFKLG+LMD  GI+TE+EI+SG+IMKMSK F K +DAE
Sbjct: 960  ADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAE 1019

Query: 518  AIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHF 339
            AI  AV+ LRKEAR+WF    S          A ASAWY+VTYH  YWGCYNEG+   HF
Sbjct: 1020 AIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHF 1079

Query: 338  LSFPWCVYDKLTQIKQKKISQR 273
            LSFPWCVYDKL QIK+ K+S R
Sbjct: 1080 LSFPWCVYDKLIQIKRDKMSIR 1101


>ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
            gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA
            polymerase [Zea mays]
          Length = 1108

 Score = 1199 bits (3101), Expect = 0.0
 Identities = 604/972 (62%), Positives = 734/972 (75%), Gaps = 3/972 (0%)
 Frame = -3

Query: 3197 YLSYGSCSYKLELAYDSIWEIQLHR--SYSQRSQFLVFQVVAAPKLYKESSQNARSIYGD 3024
            YLSY    +KLEL+Y+SIWE+QLHR  +Y  R+QFL+ QV AAPK+YK        ++ D
Sbjct: 140  YLSYNFTKFKLELSYESIWEMQLHRPPAYRSRTQFLLIQVQAAPKIYKLLPGRPGLMFED 199

Query: 3023 PIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYA 2844
            P +N+F+D  D+QW RTIDF+PS+SIGQS         + +LP I  YF +YKE +  + 
Sbjct: 200  PFFNWFRDEKDEQWTRTIDFTPSASIGQSSIYVWRCQQQCELPRIGDYFVYYKEQNLDFE 259

Query: 2843 VENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPS 2664
              NG+SYS    LVPIV+ P  IEV YEILFKIN++VQNG L G T+D  F+  V P   
Sbjct: 260  CRNGYSYSCGSSLVPIVKSPDYIEVPYEILFKINHLVQNGTLSGSTVDHSFFRHVSP-KF 318

Query: 2663 RPNAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHINSPTISLDSDSGLVYVHRVQ 2484
             P  +I+RAL  M+ +  +C  P  WL  QY++  +S+H +    ++  D GLVYVHRVQ
Sbjct: 319  EPIDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRKSRHASQKLSNISLDDGLVYVHRVQ 378

Query: 2483 VTPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERR 2304
            VTP+KV+FYGPEINVSNRV+RH+   +D+FLRISFVDED EK+ S  +  R+ S    RR
Sbjct: 379  VTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVDEDCEKLRSADLSPRSTSGNDARR 438

Query: 2303 TALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRR 2124
            TALY R+LS+L NGI IG K FEFLAFSSSQLR+NSAWMFAS     A  IR+WMGDFR 
Sbjct: 439  TALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFASRQGLTASDIRKWMGDFRD 498

Query: 2123 IRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGYVFSDGIGKISAEFAKKVAA 1947
            IRNVAKYAA LGQSFSSSTETL V   E + IPDI   + Y+FSDG+GKISA FA +VA 
Sbjct: 499  IRNVAKYAAILGQSFSSSTETLKVHKSEVERIPDITNGTKYIFSDGVGKISANFAVEVAM 558

Query: 1946 KCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQPC 1767
            KC+LK   PS FQIRY GYKGVVAVD  S+ KLSLRKSMSKF+S+N  LDVLAYSKYQPC
Sbjct: 559  KCKLKRFAPSVFQIRYGGYKGVVAVDTRSNHKLSLRKSMSKFQSENITLDVLAYSKYQPC 618

Query: 1766 FLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLREL 1587
            FLNRQLITLLSTLG+ D +FE K +EA+  L+ ++T+P+ A EAV+LM  GE  N+++EL
Sbjct: 619  FLNRQLITLLSTLGVSDNVFELKQKEALRQLNRMVTEPQAAREAVELMPMGEVTNVVKEL 678

Query: 1586 LLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFVQ 1407
            L CGY+PD EP++SMLLQ FRAS+LLEL+TK+RIF+ +GRAM+GCLDE+ +LKYGQVFVQ
Sbjct: 679  LSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRAMMGCLDETCTLKYGQVFVQ 738

Query: 1406 VSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVDC 1227
             S             +   +H  VV+ GK++VAKNPCLHPGD+R+L+AV+VP LHH+ DC
Sbjct: 739  AS-------------YSADDHRKVVVTGKVVVAKNPCLHPGDIRVLQAVDVPALHHLFDC 785

Query: 1226 VVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIEE 1047
            VVFPQ+G RPHPNECSGSDLDGDIYFVSWDP L+P+R+ +PM+Y PA    LDHDVTIEE
Sbjct: 786  VVFPQQGPRPHPNECSGSDLDGDIYFVSWDPHLIPSRLVDPMDYTPASAETLDHDVTIEE 845

Query: 1046 VMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEIP 867
            + EYFTNYIVN+SLGIIANAH VF D+ ++KAE   C++LAKLFSIAVDFPKTGVPA IP
Sbjct: 846  IQEYFTNYIVNESLGIIANAHVVFTDQERMKAESPPCVQLAKLFSIAVDFPKTGVPALIP 905

Query: 866  PTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADME 687
              L VKEYPDFMEK D+VTYESKG+IGKLYR IK+H P    IK FT++VA +SYD D+ 
Sbjct: 906  HELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDLI 962

Query: 686  VDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIGR 507
            VDG+E+++ +A  FK EYDF+LGNLMDHYGIK+EAEIISG I+KM+K FTK+ DA+AI  
Sbjct: 963  VDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCILKMAKNFTKSSDADAIRM 1022

Query: 506  AVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHFLSFP 327
            AV+ LRKEARSWF +  S          AKASAWY+VTYH  YWG YNEG  RPH +SFP
Sbjct: 1023 AVRSLRKEARSWFNEM-STGEDGQDAMEAKASAWYHVTYHQQYWGSYNEGYDRPHLISFP 1081

Query: 326  WCVYDKLTQIKQ 291
            WCVYDKL  IKQ
Sbjct: 1082 WCVYDKLVAIKQ 1093


>gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score = 1195 bits (3091), Expect = 0.0
 Identities = 611/994 (61%), Positives = 748/994 (75%), Gaps = 6/994 (0%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPIY 3015
            L+Y    YKLEL+Y+SIWEIQL+     + +FL+ QV+AAPK+Y+++  ++ S+Y DP++
Sbjct: 141  LTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPLF 200

Query: 3014 NYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVEN 2835
            NYF+D  DDQW RT DF+P +SIGQS  LCLELP    LP+I +YF +YK  +  +    
Sbjct: 201  NYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLPNIREYFVYYKNHNHDFHCMR 260

Query: 2834 GFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCP---CPS 2664
            G SYS N   VPIV+     +V YEILFKIN +VQNGIL G TLD  FY+LV P   C  
Sbjct: 261  GHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILSGPTLDDNFYSLVSPGYVCID 320

Query: 2663 RPNAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKH-INSPTISLDSDSGLVYVHRV 2487
                +I+ ALE MS +  +C  P  WL E+Y +   S+H + SP I+LD D GL YV+RV
Sbjct: 321  ----HIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSPNIALDDD-GLAYVYRV 375

Query: 2486 QVTPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSER 2307
            Q+TP+KV+FYGPEINVSNRV+R+Y   +++FLRISFVDED EK+ S  +  R+    +  
Sbjct: 376  QITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLRSTDLSPRSAPGNNAS 435

Query: 2306 RTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFR 2127
            RTALY RILS+L NGITIG+K FEFLAFSSSQLR+NSAWMFAS     A  IREWMG+FR
Sbjct: 436  RTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWMFASRTGLSASDIREWMGNFR 495

Query: 2126 RIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGYVFSDGIGKISAEFAKKVA 1950
             IRNVAKYAARLGQSFS+STETL V  +E Q +P++   + YVFSDGIG ISA+FA +V+
Sbjct: 496  NIRNVAKYAARLGQSFSASTETLKVHKYEVQALPEVTNGTKYVFSDGIGTISADFADEVS 555

Query: 1949 AKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQP 1770
             KC+L    PSAFQIRY GYKGVVA+DP S  KLSLR SMSKF S+N  LDVLAYSKYQP
Sbjct: 556  RKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSLRSSMSKFPSENITLDVLAYSKYQP 615

Query: 1769 CFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLRE 1590
            CFLNRQLITLLSTLG+ D IFE K + AV  L+ ++T+P+ A++A++LM  GE  N+++E
Sbjct: 616  CFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKE 675

Query: 1589 LLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFV 1410
            LLLCGY+PD EP++SM+LQ FRAS+LLEL+TK+RIF+P+GRAM+GCLDE+R+LKYG+VF+
Sbjct: 676  LLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMGCLDETRTLKYGEVFI 735

Query: 1409 QVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVD 1230
            Q S   N             E    V+ GK++VAKNPCLHPGD+RILEAV  P L HMV+
Sbjct: 736  QASNSAN-------------ESDKFVVTGKVVVAKNPCLHPGDIRILEAVYTPVLDHMVN 782

Query: 1229 CVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIE 1050
            CVVFPQ+G RPHPNECSGSDLDGDIYFVSWDP+L+P RM  PM+Y PAPT  LDHDV IE
Sbjct: 783  CVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVVIE 842

Query: 1049 EVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEI 870
            EV EYF NYIVN+SLGIIANAH VFADK  LKAE  +C+KLA+LFSIAVD+PKTGVPA+I
Sbjct: 843  EVHEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQI 902

Query: 869  PPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADM 690
            P  L V+EYPDFMEK DR TY SKG+IGKLYR IK+  P    I  FTK VA +SYD D+
Sbjct: 903  PSKLHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSP---HIGHFTKDVARRSYDTDL 959

Query: 689  EVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIG 510
             VDG+++++ +A +FKGEYDFKLGNLM+HYGIK+EAEIISG I+KM+K FTK+ DA+AI 
Sbjct: 960  IVDGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDADAIR 1019

Query: 509  RAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHFLS 333
             AVK LRKEARSWF D  +           AKASAWY+VTYH  Y+GCYN+  +RPH +S
Sbjct: 1020 LAVKSLRKEARSWFSDMSADESGDVHEASYAKASAWYHVTYHPEYYGCYNKIYERPHLIS 1079

Query: 332  FPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMR 231
            FPWCVYDKL  IKQ+K  +R+       LQN MR
Sbjct: 1080 FPWCVYDKLLHIKQRKSLRRRLLD----LQNGMR 1109


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score = 1192 bits (3085), Expect = 0.0
 Identities = 609/994 (61%), Positives = 755/994 (75%), Gaps = 6/994 (0%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYK-ESSQNARSIYGDPI 3018
            L Y    Y+L+L+Y++IW+I+LH    + +++LV Q+   P++Y+ E   +  + Y D  
Sbjct: 135  LLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIYQQEVCSSGGNGYED-- 192

Query: 3017 YNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVE 2838
             NYF+D PDD WVRT DF+P S IGQS +LCL L    +LPD  + F +YK+ D ++ +E
Sbjct: 193  MNYFRD-PDD-WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILE 250

Query: 2837 NGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCP-SR 2661
            NG ++SRN DLVPIV  P+GI++ Y+ILFKIN +VQ G L G TLD  FY LV P   SR
Sbjct: 251  NGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRISR 310

Query: 2660 PNAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHINSPTISLDSDSGLVYVHRVQV 2481
            P   IE AL+ +S +  SC+ PA WL E+Y K+  SK    P + +  DSGLVYV RVQ+
Sbjct: 311  P--CIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPAL-ISLDSGLVYVRRVQI 367

Query: 2480 TPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRT 2301
            TPSKV+F GPE+NVSNR+LR Y   +D+FLR+SFVDE+ EK++S  +  R     S R+T
Sbjct: 368  TPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLSPRT----STRKT 423

Query: 2300 ALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRI 2121
             +Y R+LS+L++GI +G KKFEFLAFSSSQLRENS WMFA ++   A +IR  MGDFR+I
Sbjct: 424  RIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDSADTIRAGMGDFRQI 483

Query: 2120 RNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQSG----YVFSDGIGKISAEFAKKV 1953
            RNVAKYAARLGQSF SSTETLSV  +E ++IPD+  +     YVFSDGIGKISA+FA++V
Sbjct: 484  RNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDGIGKISADFAERV 543

Query: 1952 AAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQ 1773
            A KC  K   PSAFQIRY GYKGVVAVDPTSS+KLSLRKSMSK+ES+NTKLDVLA SKYQ
Sbjct: 544  AKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYESENTKLDVLACSKYQ 603

Query: 1772 PCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLR 1593
            PCFLNRQLITLLSTL + D +F KK   AV  L+ ILTDP +A EA+ LM  GE+ N+L+
Sbjct: 604  PCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALDLMSAGESTNVLK 663

Query: 1592 ELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVF 1413
            ELL+CGYKP+ EPF+SM+LQ FRAS+LLELRTK RIF+P GRAM+GCLDE+R+L+YGQVF
Sbjct: 664  ELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCLDETRTLEYGQVF 723

Query: 1412 VQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMV 1233
            VQ S     +  ++ +   +      ++EGK++VAKNPCLHPGDVR+L AVNVP LHHMV
Sbjct: 724  VQFSGKRRRQLFDD-ICIHSSLDSCFIIEGKVVVAKNPCLHPGDVRVLRAVNVPDLHHMV 782

Query: 1232 DCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTI 1053
            DCVVFPQKG RPHPNECSGSDLDGDIYFV WDPEL+P +  +PM+Y PAP +E+D DVTI
Sbjct: 783  DCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDYTPAPPIEMDQDVTI 842

Query: 1052 EEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAE 873
            EEV EYF NYIVNDSLGIIANAHTVFAD    KA  H CL+LAKLFSIAVDFPKTGVPAE
Sbjct: 843  EEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLFSIAVDFPKTGVPAE 902

Query: 872  IPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDAD 693
            IPP L  KEYPDFMEK D+ TY S  +IG+L+R +K+  P    I +FT+QVA + YD D
Sbjct: 903  IPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIASFTRQVATKCYDPD 962

Query: 692  MEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAI 513
            MEVDGFE++L DAF+ KG YD+KLGN++D+YGIKTEAEI+SG+IM +SK FTK RDA+AI
Sbjct: 963  MEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMTLSKSFTKRRDADAI 1022

Query: 512  GRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHFLS 333
              AVK LRKEAR+WF +K +          AKASAWY+VTYH +Y+G YNEG+ R HF+S
Sbjct: 1023 NVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYFGLYNEGMNRAHFIS 1082

Query: 332  FPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMR 231
            FPWCV+DKL  IK++K++Q   A  +S L+NR+R
Sbjct: 1083 FPWCVFDKLGHIKKEKVNQ---ARLISSLENRLR 1113


>gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
          Length = 1114

 Score = 1191 bits (3082), Expect = 0.0
 Identities = 610/994 (61%), Positives = 746/994 (75%), Gaps = 6/994 (0%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPIY 3015
            L+Y    YKLEL+Y+SIWEIQL+     + +FL+ QV+AAPK+Y+++  ++ S+Y DP++
Sbjct: 141  LTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAAPKIYEQNLWHSGSMYDDPLF 200

Query: 3014 NYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVEN 2835
            NYF+D  DDQW RT DF+P +SIGQS  LCLELP    LP+I +YF +YK  +  +    
Sbjct: 201  NYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLPNIREYFAYYKNHNHDFHCMR 260

Query: 2834 GFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCP---CPS 2664
            G SYS N   VPIV+     +V YEILFKIN +VQNGIL G TLD  FY LV P   C  
Sbjct: 261  GHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILSGPTLDDNFYRLVSPGYVCID 320

Query: 2663 RPNAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKH-INSPTISLDSDSGLVYVHRV 2487
                +I+ ALE MS +  +C  P  WL E+Y +   S+H + SP I+LD D GL YV+RV
Sbjct: 321  ----HIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHMLTSPNIALDDD-GLAYVYRV 375

Query: 2486 QVTPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSER 2307
            Q+TP+KV+FYGPEINVSNRV+R+Y   +++FLRISFVDED EK+ S  +  R     +  
Sbjct: 376  QITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDEDCEKLRSTDLSPRYAPGNNAS 435

Query: 2306 RTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFR 2127
            RTALY RILS+L NGITIG+K FEFLAFSSSQLR+NSAWMFAS     A  IREWMG+FR
Sbjct: 436  RTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWMFASRTGLSASDIREWMGNFR 495

Query: 2126 RIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGYVFSDGIGKISAEFAKKVA 1950
             IRNVAKYAARLGQSFS+STETL V  +E Q +P++   + YVFSDGIG ISA+FA +V+
Sbjct: 496  NIRNVAKYAARLGQSFSASTETLKVHKYEVQALPEVTNGTKYVFSDGIGTISADFADEVS 555

Query: 1949 AKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQP 1770
             KC+L    PSAFQIRY GYKGVVA+DP S  KLSLR SMSKF S+N  LDVLAYSKYQP
Sbjct: 556  RKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSLRSSMSKFPSENITLDVLAYSKYQP 615

Query: 1769 CFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLRE 1590
            CFLNRQLITLLSTLG+ D IFE K + AV  L+ ++T+P+ A++A++LM  GE  N+++E
Sbjct: 616  CFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKE 675

Query: 1589 LLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFV 1410
            LLLCGY+PD EP++SM+LQ FRAS+LLEL+TK+RIF+P+GRAM+GCLDE+R+LKYG+VF+
Sbjct: 676  LLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEGRAMMGCLDETRTLKYGEVFI 735

Query: 1409 QVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVD 1230
            Q S   N             E    V+ GK++VAKNPCLHPGD+RIL+AV  P L HMV+
Sbjct: 736  QASNSAN-------------ESDKFVVTGKVVVAKNPCLHPGDIRILKAVYTPVLDHMVN 782

Query: 1229 CVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIE 1050
            CVVFPQ+G RPHPNECSGSDLDGDIYFVSWDP+L+P RM  PM+Y PAPT  LDHDV IE
Sbjct: 783  CVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVVIE 842

Query: 1049 EVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEI 870
            EV EYF NYIVN+SLGIIANAH VFADK  LKAE  +C+KLA+LFSIAVD+PKTGVPA+I
Sbjct: 843  EVHEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQI 902

Query: 869  PPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADM 690
            P  L V+EYPDFMEK DR TY SKG+IGKLYR IK+  P    I  FTK VA +SYD D+
Sbjct: 903  PSELHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSP---HIGHFTKDVARRSYDTDL 959

Query: 689  EVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIG 510
             VDG+++++ +A +FKGEYDFKLGNLM+HYGIK+EAEIISG I+KM+K FTK+ DA+AI 
Sbjct: 960  IVDGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDADAIR 1019

Query: 509  RAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHFLS 333
             AVK LRKEARSWF D  +           AKASAWY+VTYH  Y+GCYN+  +RPH +S
Sbjct: 1020 LAVKSLRKEARSWFSDMSADESGDVHEASYAKASAWYHVTYHPEYYGCYNKIYERPHLIS 1079

Query: 332  FPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMR 231
            FPWCVYDKL  IKQ+K  +R+       LQN MR
Sbjct: 1080 FPWCVYDKLLHIKQRKSLRRRLLD----LQNGMR 1109


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score = 1190 bits (3078), Expect = 0.0
 Identities = 598/989 (60%), Positives = 749/989 (75%), Gaps = 9/989 (0%)
 Frame = -3

Query: 3191 SYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPIYN 3012
            S+ +  YKLEL+Y++IW+I+LHR  ++ +++L+ Q++ AP++++     + +I+ DP++N
Sbjct: 141  SHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGAPRVFENDVPTSTNIFDDPLFN 200

Query: 3011 YFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVENG 2832
            +FKD PD+QW+R IDF+P S IGQS A+CLELP    LP+  + F +Y+E + +Y ++ G
Sbjct: 201  FFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLPNFRENFAYYEESERQYTLQTG 260

Query: 2831 FSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRPNA 2652
              +S+N  LVPIV PP G+++SY+ILFK+N +VQ+  L G  LD +FY LV P    P  
Sbjct: 261  VPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLAGPALDGDFYRLVDP-RRMPRE 319

Query: 2651 YIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSK-HINSPTISLDSDSGLVYVHRVQVTP 2475
            +IE ALE +      C+ P KWL +QY  +  SK H  SP ISLD+  GLVYV RVQ+TP
Sbjct: 320  FIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPAISLDT--GLVYVRRVQITP 377

Query: 2474 SKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRTAL 2295
             KV+F GPE+NVSNRVLRH+   +D+FLR+SFVDE+ +K+ S  +  R+      ++T +
Sbjct: 378  CKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFSTDLSSRS----QNKKTEI 433

Query: 2294 YWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFC-AGSIREWMGDFRRIR 2118
            Y RILSILKNGI +G KKFEFLAFSSSQLRENS WMFA +   C A  IR+WMG+F +IR
Sbjct: 434  YTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTETGCTAAYIRKWMGNFSQIR 493

Query: 2117 NVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-----SGYVFSDGIGKISAEFAKKV 1953
            NVAKYAARLGQSF SSTETLSV   E ++IPD+++     + YVFSDGIGKIS EFA+KV
Sbjct: 494  NVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGNEYVFSDGIGKISLEFAQKV 553

Query: 1952 AAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQ 1773
            A KC      PSAFQIRY GYKGVVAVDP S  KLSLRKSM K++S NTKLDVLA SK+Q
Sbjct: 554  AKKCGYD-CTPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSMRKYDSDNTKLDVLARSKFQ 612

Query: 1772 PCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLR 1593
            PC+LNRQLI+LLSTLGI D +FEKK  E V  L+ ILTD  +A E + LM  GE  N+L+
Sbjct: 613  PCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLKAQEVLDLMSAGEITNVLK 672

Query: 1592 ELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVF 1413
            E+L+CGYKP+ EPF+SM+LQ FRAS+LLELR K+RIF+PKGRAM+GCLDE+R+L+YGQVF
Sbjct: 673  EMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGRAMMGCLDETRTLEYGQVF 732

Query: 1412 VQVSCFENSRFHNNGLFFFNREHPA-VVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHM 1236
            VQ   F N+R  N    FF+ + P   +++GK++VAKNPCLHPGDVR+L+AV+VP L+HM
Sbjct: 733  VQ---FSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHM 789

Query: 1235 VDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVT 1056
            VDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL+P+R  +PM+Y    T+ELDHDV 
Sbjct: 790  VDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPIDPMDYTAPATVELDHDVM 849

Query: 1055 IEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPA 876
            IEEV EYF NYIVNDSLGIIANAHTVFADK  LKA   +C+KLA+LFS AVDFPKTGVPA
Sbjct: 850  IEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVKLARLFSTAVDFPKTGVPA 909

Query: 875  EIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDA 696
             IPP L VKEYPDFMEK D+ TY+S  +IGKL+R +KE       I +FTK VA  SYD 
Sbjct: 910  VIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFTKLVARDSYDH 969

Query: 695  DMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEA 516
            +MEVDGF ++++DAF+ K  YD+KLGNLMD+YGIKTEAEI+ GNIMKMSK F K RDAEA
Sbjct: 970  EMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFNKRRDAEA 1029

Query: 515  IGRAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHF 339
            I  AV+ LRKEAR+WF +  S           AKASAWY+VTYH SYWGCYNEG+ R H+
Sbjct: 1030 INMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYHVTYHPSYWGCYNEGMNRDHY 1089

Query: 338  LSFPWCVYDKLTQIKQKKISQRKTASQVS 252
            LSF WCVY  L QIK++K+S R+++ + S
Sbjct: 1090 LSFSWCVYPLLVQIKKEKLSIRRSSLEYS 1118


>ref|XP_006647856.1| PREDICTED: probable RNA-dependent RNA polymerase 1-like [Oryza
            brachyantha]
          Length = 1113

 Score = 1189 bits (3075), Expect = 0.0
 Identities = 607/979 (62%), Positives = 746/979 (76%), Gaps = 4/979 (0%)
 Frame = -3

Query: 3194 LSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKESSQNARSIYGDPIY 3015
            L  GS  +KLEL+Y+SIWEI+LHR    +++FL+ QV AAPK+Y+ + + +  ++ DP +
Sbjct: 143  LPSGSTEFKLELSYESIWEIELHRPPRSQTKFLLIQVEAAPKIYEPTPRRSGVMFEDPSF 202

Query: 3014 NYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVEN 2835
            NYF+D  DDQW RT DF+ SS IGQS  LCLE+P   DLP+  +YFF+YKE +  +  + 
Sbjct: 203  NYFRDSTDDQWTRTTDFTASSCIGQSYILCLEVPCCRDLPNFREYFFYYKEYNHDFECQR 262

Query: 2834 G-FSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRP 2658
            G   YS +   VPIV+ P    V YEILFKIN++VQNG L G T+D  F+ +V P    P
Sbjct: 263  GGHPYSNDTRFVPIVKSPG--YVPYEILFKINHLVQNGSLSGPTVDGSFFRMVNPA-FFP 319

Query: 2657 NAYIERALEMMSVMDYSCFAPAKWLIEQYAKFSRSKHIN-SPTISLDSDSGLVYVHRVQV 2481
              +I+RALEMMS +  +C  P  WL EQY+K  RS+++  SP+I LD   GLVYV+RVQV
Sbjct: 320  IDHIKRALEMMSYLKKTCLNPTSWLSEQYSKLRRSRYVQASPSILLDD--GLVYVYRVQV 377

Query: 2480 TPSKVFFYGPEINVSNRVLRHYDGVVDDFLRISFVDEDREKMHSNHILERAVSVGSERRT 2301
            TP+KV+FYGPEINVSNRV+R++   +++FLRISFVDED  K+ +  +  R++   + ++T
Sbjct: 378  TPAKVYFYGPEINVSNRVVRNFSADIENFLRISFVDEDCGKLRATDLSPRSLGPDA-KKT 436

Query: 2300 ALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRI 2121
            AL+ R+LS+L NGITIG K FEFLAFSSSQLR+NSAWMFAS     A  IR+WMGDFR I
Sbjct: 437  ALHNRVLSVLSNGITIGDKNFEFLAFSSSQLRDNSAWMFASRQGLTASGIRKWMGDFRNI 496

Query: 2120 RNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGYVFSDGIGKISAEFAKKVAAK 1944
            RNVAKYAARLGQSFSSSTETL V  HE + I DI   + +VFSDGIGKIS+ FA +VA K
Sbjct: 497  RNVAKYAARLGQSFSSSTETLKVYKHEVEEISDITNGTKHVFSDGIGKISSAFAIEVAMK 556

Query: 1943 CRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQPCF 1764
            C LK   PSAFQIRY GYKGVVAVDPTS  KLSLRKSM KF+S NT +DVLAYSKYQP F
Sbjct: 557  CNLKRFAPSAFQIRYGGYKGVVAVDPTSCWKLSLRKSMLKFQSDNTTVDVLAYSKYQPGF 616

Query: 1763 LNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQLMHPGETANMLRELL 1584
            LNRQLITLLSTLG+ D +FE K +EAV  L+ ++T+P+ A+EA++LM  GE  N ++E+L
Sbjct: 617  LNRQLITLLSTLGVRDSVFELKQKEAVNQLNRMVTEPQAAIEAIELMPMGEITNAVKEML 676

Query: 1583 LCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLDESRSLKYGQVFVQV 1404
            LCGYKPD EP++SMLLQ FRAS+LLEL+TK+RIF+PKGRAM+GCLDE+R+LKY QVF+Q 
Sbjct: 677  LCGYKPDDEPYLSMLLQTFRASKLLELKTKSRIFIPKGRAMMGCLDETRTLKYEQVFIQA 736

Query: 1403 SCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVDCV 1224
            +   N             ++   ++ GK+++AKNPCLHPGD+RIL+AV++P LHHMV+CV
Sbjct: 737  TSSAN-------------DNDKFIVTGKVVIAKNPCLHPGDIRILQAVDLPVLHHMVNCV 783

Query: 1223 VFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIEEV 1044
            VFPQ+G RPHPNECSGSDLDGDIYFVSWD  L+P RM  PM+Y PAPT  LDHDVTIEEV
Sbjct: 784  VFPQQGPRPHPNECSGSDLDGDIYFVSWDSTLIPPRMVAPMDYTPAPTETLDHDVTIEEV 843

Query: 1043 MEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEIPP 864
             EYFTNYIVN+SLGIIANAH VFADK  LKAE   C++LAKLFSIAVDFPKTGVPA+I P
Sbjct: 844  EEYFTNYIVNESLGIIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPAQIRP 903

Query: 863  TLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADMEV 684
             L VKEYPDFMEK D+ TYESKG+IGKLYR IK+H P    IK FT  VA +SYD D+ V
Sbjct: 904  ELHVKEYPDFMEKLDKATYESKGVIGKLYREIKKHTP---HIKHFTIDVARRSYDTDLIV 960

Query: 683  DGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIGRA 504
            DG+E+++ +A   K EYDFKL NLMDHYGIK+EAEIISG I+KM+K FTKN DA+A+  A
Sbjct: 961  DGYEDYITEAMALKEEYDFKLCNLMDHYGIKSEAEIISGCILKMAKNFTKNSDADAVRLA 1020

Query: 503  VKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGLKRPHFLSFP 327
            V+ LRKEARSWF +  S           AKASAWY+VTYH  YWGCYNEG +RPH +SFP
Sbjct: 1021 VRSLRKEARSWFSEMSSDDNGYDYDASEAKASAWYHVTYHPEYWGCYNEGYERPHLISFP 1080

Query: 326  WCVYDKLTQIKQKKISQRK 270
            WC+Y+KL +IKQ++   RK
Sbjct: 1081 WCMYEKLLRIKQRRKFVRK 1099