BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00003716
         (875 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004978645.1| PREDICTED: DNA-directed RNA polymerases I, I...   261   2e-67
ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836...   259   1e-66
ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group] g...   256   6e-66
gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing...   256   6e-66
ref|NP_001065723.1| Os11g0143400 [Oryza sativa Japonica Group] g...   254   3e-65
ref|XP_006664324.1| PREDICTED: DNA-directed RNA polymerase V sub...   253   5e-65
ref|XP_006663193.1| PREDICTED: DNA-directed RNA polymerase V sub...   252   1e-64
gb|EAY79909.1| hypothetical protein OsI_35073 [Oryza sativa Indi...   251   2e-64
ref|XP_002450250.1| hypothetical protein SORBIDRAFT_05g002600 [S...   246   1e-62
emb|CBX25377.1| hypothetical_protein [Oryza brachyantha]              245   1e-62
emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]               244   3e-62
dbj|BAJ92858.1| predicted protein [Hordeum vulgare subsp. vulgar...   244   4e-62
tpg|DAA39210.1| TPA: DNA-directed RNA polymerase II polypeptide ...   242   1e-61
gb|ACG37268.1| DNA-directed RNA polymerase II 23 kDa polypeptide...   242   1e-61
ref|NP_001141853.1| uncharacterized protein LOC100273995 [Zea ma...   242   1e-61
emb|CBI30093.3| unnamed protein product [Vitis vinifera]              230   6e-58
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I...   230   6e-58
ref|XP_003577067.1| PREDICTED: DNA-directed RNA polymerases I, I...   229   1e-57
gb|EOY19924.1| RNA polymerase II fifth largest subunit, putative...   228   2e-57
gb|EOY09046.1| Eukaryotic rpb5 RNA polymerase subunit family pro...   228   2e-57

>ref|XP_004978645.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Setaria italica]
          Length = 240

 Score =  261 bits (668), Expect = 2e-67
 Identities = 131/215 (60%), Positives = 169/215 (78%), Gaps = 1/215 (0%)
 Frame = +1

Query: 55  VPECLSSFVDRG-SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKL 231
           VP C+SS +DRG SVESHR FLARRT LEM+RDRG+ VP+ ELA TLP FR+ + ++P+L
Sbjct: 27  VPACISSMIDRGGSVESHRLFLARRTALEMLRDRGYSVPEAELARTLPEFRAWWAEKPEL 86

Query: 232 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 411
           + L  S ++    S   K+ V+F   EP K++ +RE+Y  V++ENL+ LIL+LQSK+TSK
Sbjct: 87  ERLAFSTALAADQS--SKVKVVFCPPEPVKIAVIREIYSRVQEENLSRLILILQSKITSK 144

Query: 412 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 591
           +R+ +KEI   KV+ FQITELLVNITKHVL PKHE+LT +EK  LLK+YNV +SQ PRML
Sbjct: 145 SRESIKEIFPFKVDTFQITELLVNITKHVLKPKHEVLTAEEKAKLLKEYNVVDSQLPRML 204

Query: 592 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           E+D V+RYHGL KG +VKVTY+ ELTG+HVTYRC+
Sbjct: 205 ETDAVARYHGLGKGTVVKVTYDSELTGNHVTYRCI 239


>ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836489 [Brachypodium
           distachyon]
          Length = 468

 Score =  259 bits (661), Expect = 1e-66
 Identities = 125/214 (58%), Positives = 167/214 (78%)
 Frame = +1

Query: 55  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKLD 234
           V  C+SS +D G  ESHR FLARRT LEM+RDR + VP+ +LA TLP FR+ + ++P++D
Sbjct: 256 VARCVSSMIDSGDPESHRLFLARRTALEMLRDRRYAVPEADLARTLPEFRAWWAERPEID 315

Query: 235 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKA 414
             R+S S      P  K+ ++F   EPFK++ +RE+YG VK ENL+ LILVLQSK+TS+A
Sbjct: 316 --RLSFSTTLASDPSNKVQLVFCPPEPFKIAAIREVYGRVKDENLSCLILVLQSKITSRA 373

Query: 415 RDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLE 594
           +D +KEI K KV++FQI ELLVN+TKHVL P+HE+LT +EK  LLKKYNV +SQ PRMLE
Sbjct: 374 KDAIKEIFKYKVDVFQIAELLVNVTKHVLKPEHEVLTPEEKAHLLKKYNVVDSQLPRMLE 433

Query: 595 SDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           +D ++RY+GL KG +++VTY+GELTG+HVTYRC+
Sbjct: 434 TDAIARYYGLGKGTVLRVTYDGELTGNHVTYRCI 467


>ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group]
           gi|113648626|dbj|BAF29138.1| Os12g0139500 [Oryza sativa
           Japonica Group] gi|125535725|gb|EAY82213.1| hypothetical
           protein OsI_37416 [Oryza sativa Indica Group]
           gi|125578454|gb|EAZ19600.1| hypothetical protein
           OsJ_35178 [Oryza sativa Japonica Group]
           gi|346703760|emb|CBX24428.1| hypothetical_protein [Oryza
           glaberrima]
          Length = 227

 Score =  256 bits (655), Expect = 6e-66
 Identities = 122/214 (57%), Positives = 167/214 (78%)
 Frame = +1

Query: 55  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKLD 234
           VPEC++S +DRGSVESHR FLARRT +EM+RDRG+ VP+ E+A TLP FR+ + ++P ++
Sbjct: 15  VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 74

Query: 235 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKA 414
             R++ +      P KK+ ++F   EP K++T+RE+Y   K+ENL+ L+L+LQSK+ S+A
Sbjct: 75  --RLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRA 132

Query: 415 RDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLE 594
           R+ +KEI K KV++FQ T+LLVNITKHVL PKHE+L+ D+K  LLK+YNV +SQ PRMLE
Sbjct: 133 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLE 192

Query: 595 SDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           +D V+RY+G  KG +VKVTY+GELTG  V YRCV
Sbjct: 193 TDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCV 226


>gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing protein,
           expressed [Oryza sativa Japonica Group]
          Length = 335

 Score =  256 bits (655), Expect = 6e-66
 Identities = 122/214 (57%), Positives = 167/214 (78%)
 Frame = +1

Query: 55  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKLD 234
           VPEC++S +DRGSVESHR FLARRT +EM+RDRG+ VP+ E+A TLP FR+ + ++P ++
Sbjct: 123 VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 182

Query: 235 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKA 414
             R++ +      P KK+ ++F   EP K++T+RE+Y   K+ENL+ L+L+LQSK+ S+A
Sbjct: 183 --RLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRA 240

Query: 415 RDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLE 594
           R+ +KEI K KV++FQ T+LLVNITKHVL PKHE+L+ D+K  LLK+YNV +SQ PRMLE
Sbjct: 241 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLE 300

Query: 595 SDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           +D V+RY+G  KG +VKVTY+GELTG  V YRCV
Sbjct: 301 TDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCV 334


>ref|NP_001065723.1| Os11g0143400 [Oryza sativa Japonica Group]
           gi|77548620|gb|ABA91417.1| RNA polymerase Rpb5,
           N-terminal domain containing protein, expressed [Oryza
           sativa Japonica Group] gi|113644427|dbj|BAF27568.1|
           Os11g0143400 [Oryza sativa Japonica Group]
           gi|125576186|gb|EAZ17408.1| hypothetical protein
           OsJ_32930 [Oryza sativa Japonica Group]
          Length = 227

 Score =  254 bits (649), Expect = 3e-65
 Identities = 121/214 (56%), Positives = 166/214 (77%)
 Frame = +1

Query: 55  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKLD 234
           VPEC++S +DRGSVESHR FLARRT +EM+RDRG+ VP+ E+A TLP FR+ + ++P ++
Sbjct: 15  VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 74

Query: 235 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKA 414
             R++ +      P KK+ ++F   EP K++T+RE+Y   K+ENL+ L+L+LQSK+ S+A
Sbjct: 75  --RLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRA 132

Query: 415 RDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLE 594
           R+ +KEI K KV++FQ T+LLVNITKHVL PKHE+L+ D+K  LLK+YNV +SQ PRMLE
Sbjct: 133 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLE 192

Query: 595 SDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           +D V+RY+G  KG +VKV Y+GELTG  V YRCV
Sbjct: 193 TDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCV 226


>ref|XP_006664324.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Oryza
           brachyantha]
          Length = 283

 Score =  253 bits (647), Expect = 5e-65
 Identities = 123/215 (57%), Positives = 170/215 (79%), Gaps = 1/215 (0%)
 Frame = +1

Query: 55  VPECLSSFVDR-GSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKL 231
           VP+C++S VDR GSVES R FLARRT LEM+RDRG+ VPD+E+A TLP FR+ +G++ ++
Sbjct: 70  VPDCIASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPDEEIARTLPEFRAWWGEKSEI 129

Query: 232 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 411
           +  R++ +      P KK+ ++F   EP K++T+RE+Y   + ENL+ LIL+LQS++ S+
Sbjct: 130 E--RLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQTEGENLSRLILILQSRILSR 187

Query: 412 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 591
           AR+ +KEI K+KV++FQ+TELLVNITKHVL PKHE+L+  +K  LLK+YNV +SQ PRML
Sbjct: 188 ARESIKEIFKLKVDIFQVTELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQLPRML 247

Query: 592 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           E+DPV+RY+GL KG +VKV Y+ ELTG+HV YRCV
Sbjct: 248 ETDPVARYYGLDKGTVVKVIYDSELTGNHVAYRCV 282


>ref|XP_006663193.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Oryza
           brachyantha] gi|346703190|emb|CBX25289.1|
           hypothetical_protein [Oryza brachyantha]
          Length = 288

 Score =  252 bits (643), Expect = 1e-64
 Identities = 122/215 (56%), Positives = 170/215 (79%), Gaps = 1/215 (0%)
 Frame = +1

Query: 55  VPECLSSFVDR-GSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKL 231
           VP+C++S VDR GSVES R FLARRT LEM+RDRG+ VP++E+A TLP FR+ +G++ ++
Sbjct: 75  VPDCIASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPEEEIARTLPEFRAWWGEKSEI 134

Query: 232 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 411
           +  R++ +      P KK+ ++F   EP K++T+RE+Y   + ENL+ LIL+LQS++ S+
Sbjct: 135 E--RLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQTEGENLSRLILILQSRILSR 192

Query: 412 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 591
           AR+ +KEI K+KV++FQ+TELLVNITKHVL PKHE+L+  +K  LLK+YNV +SQ PRML
Sbjct: 193 ARESIKEIFKLKVDIFQVTELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQLPRML 252

Query: 592 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           E+DPV+RY+GL KG +VKV Y+ ELTG+HV YRCV
Sbjct: 253 ETDPVARYYGLDKGTVVKVIYDSELTGNHVAYRCV 287


>gb|EAY79909.1| hypothetical protein OsI_35073 [Oryza sativa Indica Group]
          Length = 227

 Score =  251 bits (642), Expect = 2e-64
 Identities = 120/214 (56%), Positives = 165/214 (77%)
 Frame = +1

Query: 55  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKLD 234
           VPEC++S +DRGSVESHR FLARRT +EM+RDRG+ VP+ E+A T P FR+ + ++P ++
Sbjct: 15  VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGIE 74

Query: 235 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKA 414
             R++ +      P KK+ ++F   EP K++T+RE+Y   K+ENL+ L+L+LQSK+ S+A
Sbjct: 75  --RLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRA 132

Query: 415 RDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLE 594
           R+ +KEI K KV++FQ T+LLVNITKHVL PKHE+L+ D+K  LLK+YNV +SQ PRMLE
Sbjct: 133 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLE 192

Query: 595 SDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           +D V+RY+G  KG +VKV Y+GELTG  V YRCV
Sbjct: 193 TDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCV 226


>ref|XP_002450250.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
           gi|241936093|gb|EES09238.1| hypothetical protein
           SORBIDRAFT_05g002600 [Sorghum bicolor]
          Length = 263

 Score =  246 bits (627), Expect = 1e-62
 Identities = 127/227 (55%), Positives = 166/227 (73%), Gaps = 4/227 (1%)
 Frame = +1

Query: 28  DTESGEGSAVPE---CLSSFVDRG-SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLP 195
           D    +  AVPE   C+S+ +D G SVES R FLARRT LEM+RDRG+ VP+DELA TLP
Sbjct: 38  DDYDDDDDAVPEVAACISAMLDLGGSVESKRLFLARRTALEMLRDRGYAVPEDELARTLP 97

Query: 196 AFRSKFGDQPKLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTN 375
            FR+ + D+P+L+  R++ S      P  K+ V+F   EP K++ +R +Y  VK ENL+ 
Sbjct: 98  EFRAWWEDKPELE--RLAFSTTLASDPSSKVKVVFCPPEPVKIAAIRVVYTGVKDENLSR 155

Query: 376 LILVLQSKMTSKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKK 555
           LIL+LQ ++ SKAR+ +KEI   KV+ FQITELLVNITKH L PKH++LT +EK  LLK+
Sbjct: 156 LILILQGRIMSKAREAIKEIFPYKVDTFQITELLVNITKHALKPKHQVLTAEEKAKLLKE 215

Query: 556 YNVGESQFPRMLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           YNV +SQ PRMLE+D V+RY+GL KG +VKV Y+ ELTG+HVTYRC+
Sbjct: 216 YNVVDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 262


>emb|CBX25377.1| hypothetical_protein [Oryza brachyantha]
          Length = 226

 Score =  245 bits (626), Expect = 1e-62
 Identities = 122/215 (56%), Positives = 168/215 (78%), Gaps = 1/215 (0%)
 Frame = +1

Query: 55  VPECLSSFVDR-GSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKL 231
           VP+C++S VDR GSVES R FLARRT LEM+RDRG+ VPD+E+A TLP FR+ +G++ ++
Sbjct: 15  VPDCIASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPDEEIARTLPEFRAWWGEKSEI 74

Query: 232 DDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSK 411
           +  R++ +      P KK+ ++F   EP K++T+RE+Y   + ENL+ LIL+LQS++ S+
Sbjct: 75  E--RLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQTEGENLSRLILILQSRILSR 132

Query: 412 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 591
           AR+ +KEI K+KV++FQ  ELLVNITKHVL PKHE+L+  +K  LLK+YNV +SQ PRML
Sbjct: 133 ARESIKEIFKLKVDIFQ--ELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQLPRML 190

Query: 592 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           E+DPV+RY+GL KG +VKV Y+ ELTG+HV YRCV
Sbjct: 191 ETDPVARYYGLDKGTVVKVIYDSELTGNHVAYRCV 225


>emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]
          Length = 206

 Score =  244 bits (623), Expect = 3e-62
 Identities = 117/206 (56%), Positives = 160/206 (77%)
 Frame = +1

Query: 79  VDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKLDDLRISLSI 258
           +DRGSVESHR FLARRT +EM+RDRG+ VP+ E+A TLP FR+ + ++P ++  R++ + 
Sbjct: 2   IDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE--RLAFTT 59

Query: 259 PCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMTSKARDGVKEIS 438
                P KK+ ++F   EP K++T+RE+Y   K+ENL+ L+L+LQSK+ S+AR+ +KEI 
Sbjct: 60  TLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF 119

Query: 439 KIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRMLESDPVSRYH 618
           K KV++FQ T+LLVNITKHVL PKHE+L+ D+K  LLK+YNV +SQ PRMLE+D V+RY+
Sbjct: 120 KFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYY 179

Query: 619 GLKKGQIVKVTYEGELTGSHVTYRCV 696
           G  KG +VKVTY+GELTG  V YRCV
Sbjct: 180 GFDKGTVVKVTYDGELTGKRVAYRCV 205


>dbj|BAJ92858.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326531658|dbj|BAJ97833.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 251

 Score =  244 bits (622), Expect = 4e-62
 Identities = 123/217 (56%), Positives = 163/217 (75%), Gaps = 3/217 (1%)
 Frame = +1

Query: 55  VPECLSSFVDRGS---VESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQP 225
           V  C+SS VD G    VES R FLARRT LEM+RDRG+ VP+DELA TLP FR+ + + P
Sbjct: 36  VAGCISSMVDLGGAAGVESQRLFLARRTALEMLRDRGYSVPEDELARTLPEFRAWWSETP 95

Query: 226 KLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMT 405
           +++  R+S S      P  K+ ++F   EP K++ +RE++  +K+ENL+ LIL+LQSK+T
Sbjct: 96  EIE--RLSFSTTLASDPSSKVRIVFCPPEPVKIAAIREVHLRIKEENLSCLILILQSKIT 153

Query: 406 SKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPR 585
           ++AR+ +KEI K KV++FQITELLVNITKHVL P HE+LT +EK  LLK+YNV +SQ PR
Sbjct: 154 ARARESIKEIFKFKVDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPR 213

Query: 586 MLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           MLE+D V+RY+GL KG +VK TY+ ELT  HVTYRC+
Sbjct: 214 MLETDAVARYYGLGKGTVVKFTYDNELTVDHVTYRCI 250


>tpg|DAA39210.1| TPA: DNA-directed RNA polymerase II polypeptide [Zea mays]
          Length = 263

 Score =  242 bits (617), Expect = 1e-61
 Identities = 124/224 (55%), Positives = 163/224 (72%), Gaps = 1/224 (0%)
 Frame = +1

Query: 28  DTESGEGSAVPECLSSFVDRG-SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFR 204
           D E  +   V  C+S+ +DRG SVESHR FLARRT LEM+RDRG+ VP++ELA TLP FR
Sbjct: 41  DDEDDDVPEVAACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFR 100

Query: 205 SKFGDQPKLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLIL 384
           + +  +P+L+  R++ S      P  K+ V+F    P K++ +R +Y  VK ENL+ LIL
Sbjct: 101 AWWEYRPELE--RLAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLIL 158

Query: 385 VLQSKMTSKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNV 564
           +LQ K+ S  R+ +KEI + KV+ FQITELLVNITKHVL PKHE+LT + K  LLK+YNV
Sbjct: 159 ILQGKIMSTTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNV 218

Query: 565 GESQFPRMLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
            +SQ PRMLE+D V+RY+GL KG +VKV Y+ ELTG+HVTYRC+
Sbjct: 219 VDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 262


>gb|ACG37268.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
          Length = 264

 Score =  242 bits (617), Expect = 1e-61
 Identities = 124/224 (55%), Positives = 163/224 (72%), Gaps = 1/224 (0%)
 Frame = +1

Query: 28  DTESGEGSAVPECLSSFVDRG-SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFR 204
           D E  +   V  C+S+ +DRG SVESHR FLARRT LEM+RDRG+ VP++ELA TLP FR
Sbjct: 42  DDEDDDVPEVAACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFR 101

Query: 205 SKFGDQPKLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLIL 384
           + +  +P+L+  R++ S      P  K+ V+F    P K++ +R +Y  VK ENL+ LIL
Sbjct: 102 AWWEYRPELE--RLAFSTTLASDPSSKVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLIL 159

Query: 385 VLQSKMTSKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNV 564
           +LQ K+ S  R+ +KEI + KV+ FQITELLVNITKHVL PKHE+LT + K  LLK+YNV
Sbjct: 160 ILQGKIMSTTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNV 219

Query: 565 GESQFPRMLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
            +SQ PRMLE+D V+RY+GL KG +VKV Y+ ELTG+HVTYRC+
Sbjct: 220 VDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 263


>ref|NP_001141853.1| uncharacterized protein LOC100273995 [Zea mays]
           gi|194706176|gb|ACF87172.1| unknown [Zea mays]
          Length = 248

 Score =  242 bits (617), Expect = 1e-61
 Identities = 124/224 (55%), Positives = 163/224 (72%), Gaps = 1/224 (0%)
 Frame = +1

Query: 28  DTESGEGSAVPECLSSFVDRG-SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFR 204
           D E  +   V  C+S+ +DRG SVESHR FLARRT LEM+RDRG+ VP++ELA TLP FR
Sbjct: 26  DDEDDDVPEVAACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFR 85

Query: 205 SKFGDQPKLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLIL 384
           + +  +P+L+  R++ S      P  K+ V+F    P K++ +R +Y  VK ENL+ LIL
Sbjct: 86  AWWEYRPELE--RLAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLIL 143

Query: 385 VLQSKMTSKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNV 564
           +LQ K+ S  R+ +KEI + KV+ FQITELLVNITKHVL PKHE+LT + K  LLK+YNV
Sbjct: 144 ILQGKIMSTTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNV 203

Query: 565 GESQFPRMLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
            +SQ PRMLE+D V+RY+GL KG +VKV Y+ ELTG+HVTYRC+
Sbjct: 204 VDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 247


>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
          Length = 330

 Score =  230 bits (586), Expect = 6e-58
 Identities = 118/215 (54%), Positives = 159/215 (73%), Gaps = 1/215 (0%)
 Frame = +1

Query: 55  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKLD 234
           V  CLSSFVD G +ESHRY+LARRTLLEM+RDRG+ +P  ++ ++L  FRS +  +P  D
Sbjct: 118 VKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPD 177

Query: 235 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGA-VKQENLTNLILVLQSKMTSK 411
            LRIS ++  +  P KK+LVIF G +  K++ +R +    V +++L+ LILVLQ+ +TS+
Sbjct: 178 RLRISAAL--RSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQ 235

Query: 412 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 591
           A   V ++   +VE FQIT+LLVNITKHVL PKH +LT  EK  LLKKY++ E Q PRML
Sbjct: 236 ALKAV-DLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRML 294

Query: 592 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           + D ++RY+GL+KGQ+VKV Y GE+TGSHVTYRCV
Sbjct: 295 QQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCV 329


>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Vitis vinifera]
          Length = 229

 Score =  230 bits (586), Expect = 6e-58
 Identities = 118/215 (54%), Positives = 159/215 (73%), Gaps = 1/215 (0%)
 Frame = +1

Query: 55  VPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQPKLD 234
           V  CLSSFVD G +ESHRY+LARRTLLEM+RDRG+ +P  ++ ++L  FRS +  +P  D
Sbjct: 17  VKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPD 76

Query: 235 DLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGA-VKQENLTNLILVLQSKMTSK 411
            LRIS ++  +  P KK+LVIF G +  K++ +R +    V +++L+ LILVLQ+ +TS+
Sbjct: 77  RLRISAAL--RSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQ 134

Query: 412 ARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPRML 591
           A   V ++   +VE FQIT+LLVNITKHVL PKH +LT  EK  LLKKY++ E Q PRML
Sbjct: 135 ALKAV-DLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRML 193

Query: 592 ESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           + D ++RY+GL+KGQ+VKV Y GE+TGSHVTYRCV
Sbjct: 194 QQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCV 228


>ref|XP_003577067.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Brachypodium distachyon]
          Length = 270

 Score =  229 bits (584), Expect = 1e-57
 Identities = 117/217 (53%), Positives = 159/217 (73%), Gaps = 3/217 (1%)
 Frame = +1

Query: 55  VPECLSSFVDRG---SVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGDQP 225
           V E ++S VDRG   S E H  FLARRT LEM+RDRG+ VP+ ELA TL  FR+ + ++P
Sbjct: 55  VVEWMASMVDRGGRASHEVHSLFLARRTALEMLRDRGYSVPEPELARTLTEFRAWWAEKP 114

Query: 226 KLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSKMT 405
           ++   R+S S         K+  +F   +P  ++T+RE+Y  +++ENL+ LIL+LQ  +T
Sbjct: 115 EMR--RLSFSATFASDHSNKVQFVFCPPKPVNITTIREVYSQIEEENLSRLILILQGDIT 172

Query: 406 SKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQFPR 585
           SKARD +KEI   KV++FQ+TELLVNI+KH L PKHE+LT +EK +LLKKYN+ +S+ P 
Sbjct: 173 SKARDCIKEIFPFKVDIFQVTELLVNISKHELKPKHEVLTAEEKAELLKKYNLEDSRLPC 232

Query: 586 MLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
           MLE+D V+RY+GL KG IVK+TY+GELTG HVTYRC+
Sbjct: 233 MLENDAVARYYGLGKGTIVKITYDGELTGHHVTYRCI 269


>gb|EOY19924.1| RNA polymerase II fifth largest subunit, putative isoform 2
           [Theobroma cacao]
          Length = 235

 Score =  228 bits (581), Expect = 2e-57
 Identities = 114/220 (51%), Positives = 157/220 (71%)
 Frame = +1

Query: 40  GEGSAVPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKFGD 219
           G       C+ S VD+GSVESHR++LAR+T+ EM++DRG+ V D EL  ++  FRS FGD
Sbjct: 19  GGAEGAQPCIKSMVDQGSVESHRFYLARKTVWEMLKDRGYNVADSELTPSITEFRSVFGD 78

Query: 220 QPKLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVKQENLTNLILVLQSK 399
           QP L+ LRIS+S+  + +P KK+LV+F GT   + +T+  + G +  E+L+ LIL+LQSK
Sbjct: 79  QPDLELLRISVSL--RSNPSKKILVVFMGTNDIRKATVCALKGQILNESLSGLILILQSK 136

Query: 400 MTSKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGESQF 579
           M S A   +K     KVE+F+I +L VNITKH LMPKHE+LT +EKQ LLKKY + + Q 
Sbjct: 137 MNSFALKELKNFP-FKVELFKIADLYVNITKHFLMPKHEVLTAEEKQKLLKKYQLEDKQL 195

Query: 580 PRMLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCVL 699
           P+ML++DP++RY+GL+KGQ+VKVTY  E    H  YRCV+
Sbjct: 196 PQMLQTDPIARYYGLEKGQVVKVTYSEEFVQFHEQYRCVV 235


>gb|EOY09046.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao]
          Length = 228

 Score =  228 bits (581), Expect = 2e-57
 Identities = 115/222 (51%), Positives = 163/222 (73%), Gaps = 1/222 (0%)
 Frame = +1

Query: 34  ESGEGSAVPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDELALTLPAFRSKF 213
           +   G A+ +CLS  VD GS ESHRY+L+RRT+LEM+RDRG+ VP  E+ L+L  FR+ +
Sbjct: 9   DGSNGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQEFRAIY 68

Query: 214 GDQPKLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAV-KQENLTNLILVL 390
           G  P  D LR+S +   K  P K++LV+F+G    K+S +R + G +  +E+LT LILVL
Sbjct: 69  GQSPDFDRLRLSATH--KTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLILVL 126

Query: 391 QSKMTSKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEKQDLLKKYNVGE 570
           Q+ +T++A   + ++   KVE+FQIT+LLVNITKHVL PKH++LT  EKQ LL+KY++ E
Sbjct: 127 QNHITNQALKAL-DLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSIEE 185

Query: 571 SQFPRMLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCV 696
            Q PR+L+ D ++RY+G ++GQ+VKV Y+GE+T SHVTYRCV
Sbjct: 186 KQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCV 227