BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00003655
         (5231 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  2854   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2845   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  2844   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  2842   0.0  
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S...  2821   0.0  
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...  2818   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  2817   0.0  
gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...  2813   0.0  
gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...  2808   0.0  
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]   2806   0.0  
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su...  2796   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  2784   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  2784   0.0  
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe...  2778   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  2776   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...  2775   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  2774   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  2774   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  2774   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...  2774   0.0  

>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 2854 bits (7398), Expect = 0.0
 Identities = 1412/1537 (91%), Positives = 1475/1537 (95%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKV+ VQFGILSPDEIRQMSVVQ+EH ETMERGKPKP GLSDPR+GTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRK+KCETCMA MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADEDD K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRLKRIYDACKSKK CA             DEP+K+ R GCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNIT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            +DGMKMVAE+KAPKKK+D+QEQLPEP ERKQILSAERVL+VLKRI+D+DCLLLGLNPKFA
Sbjct: 180  VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            +EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            REDGQRLDLRY+KKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGK+PAPAILKPRP+WTGKQVFNLIIPK I
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NLIRFSAWH+E+E G ITPGDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETIS AKN+VKELIK A +K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDKH 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LEAEPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK EF  VF+YELDD+NW P+YM PEHVEDLKTIREFRNVF+AEVQKLEADR+
Sbjct: 900  KLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRF 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEIATTGD T PMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV
Sbjct: 960  QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDP+ TIIEEDV+FV+SYYEMPDED
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNADKLILR+RI
Sbjct: 1200 VDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
             ND+APKGE+QDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+F++++GFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
             D EWMLDTEGVNLLAV+CHEDVDATRTTSNHLIEVIE+LGIEAVRR+LLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSY++ GLDFGMTPARSPISG
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2845 bits (7374), Expect = 0.0
 Identities = 1407/1537 (91%), Positives = 1469/1537 (95%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKVR VQFGILSPDEIRQMSVVQ+EH ET ERGKPKP GLSDPR+GTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQA KIRNPKNRLK+I DACK+K KC               EP+KK+R GCGAQQP +T
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSD-EPVKKSRGGCGAQQPKLT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            I+GMKM+AEYK  +KK+D+ EQLPEP ERKQ LSAERVL+VLKRI+D+DC+LLGLNPK+A
Sbjct: 180  IEGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            SEFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            REDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NL+R SAWH+ESE G ITPGDT VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETISKAKN+VKELI+ AQE+Q
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQ 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LEAEPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIP+GF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK EF  VFKYE+DD+NWNPSYM PEHVEDLKTIREFRNVFDAEVQKLEADR+
Sbjct: 900  KLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRF 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEIATTGD + PMPVNLKRLIWNAQKTFK+DLRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 960  QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD +SMEAQKNATL FNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KP+V+K KE AKNVQCALEYTTLRSVT ATE+WYDPDPMSTIIEEDVDFVKSYYEMPDE+
Sbjct: 1140 KPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            +APEKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1200 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
            MND+APKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGK+N+FDESEGFK
Sbjct: 1260 MNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
             +VEWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
             LRGVTENIMLGQLAPIGTG CALYLNDQMLQ AIELQLPSYM+ GLDFGMTP+RSPI+G
Sbjct: 1440 FLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYME-GLDFGMTPSRSPITG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYH+GMMSP+YLLSPN+R SPITDAQFSPYVGGMAF
Sbjct: 1499 TPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score = 2844 bits (7372), Expect = 0.0
 Identities = 1410/1538 (91%), Positives = 1472/1538 (95%), Gaps = 1/1538 (0%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKV+ VQFGILSPDEIRQMSV+Q+EH ETMERGKPKP GLSDPR+GTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRK+KCETCMA MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADEDD K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRLKRIYDACKSKK CA             DEP+KK R GCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNIT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            +DGMKMVAE+KAPKKK+D+Q+QLPEP ERKQILSAERVL+VLKRI+D+DCLLLGLNPKFA
Sbjct: 180  VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            +EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            REDGQRLDLRY+KKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDT IEKDVFMN LMWW+DFDGKIPAPAILKPRP+WTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNTLMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NLIRFSAWH+E+E G ITPGDT+VRIEKGELLSGTLCKK+LGT +GSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQ  FSIGIGDTIADAATMEKINETISKAKN+VKELIK AQ+K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAQDKH 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LEAEPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK EF +VF+YELDD+NW P+YM PEHV+DLKTIREFRNVF+AEVQKLEADR+
Sbjct: 900  KLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRF 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEI TTGD + PMPVNLKRLIWNAQKTFKID RRPSDMHPMEIVEAIDKLQERLKVV
Sbjct: 960  QLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDP+ TIIEEDV+FV+SYYEMPDED
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            I P+KISPWLLRIELNREMM+DKKLSMADIAEKINREFDDDL+CIFNDDNADKLILRIRI
Sbjct: 1200 IDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
             NDDAPKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+FD+SEGFK
Sbjct: 1260 TNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
            +D EWMLDTEGVNLLAV+CHEDVDATRTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1320 ADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AEAD
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEAD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
             LRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSY++ GLDFGMTPARSPISG
Sbjct: 1440 LLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPI-TDAQFSPYVGGMAF 434
            TPYHEGMMSPSYLLSPNIRASPI TDA FSPYVG MAF
Sbjct: 1499 TPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 2842 bits (7367), Expect = 0.0
 Identities = 1409/1538 (91%), Positives = 1471/1538 (95%), Gaps = 1/1538 (0%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKV+ VQFGILSPDEIRQMSV+Q+EH ETMERGKPKP GLSDPR+GTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRK+KCETCMA MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADEDD K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRLKRIYDACKSKK CA             DEP+KK R GCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNIT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            +DGMKMVAE+KAPKKK+D+Q+QLPEP ERKQILSAERVL+VLKRI+D+DCLLLGLNPKFA
Sbjct: 180  VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            +EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            REDGQRLDLRY+KKSSD HL+LGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLDLGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDT IEKDVFMNILMWW+DFDGKIPAPAILKPRP+WTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NLIRFSAWH+E+E G ITPGDT+VRIEKGELLSGTLCKK+LGT +GSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQ  FSIGIGDTIADAATMEKINETISKAKN+VKELIK A E  
Sbjct: 660  ARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIKQAHENH 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LEAEPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK EF +VF+YELDD+NW P+YM PEHV+DLKTIREFRNVF+AEVQKLEADR+
Sbjct: 900  KLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRF 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEI TTGD + PMPVNLKRLIWNAQKTFKID RRPSDMHPMEIVEAIDKLQERLKVV
Sbjct: 960  QLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDP+ TIIEEDV+FV+SYYEMPDED
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            I P+KISPWLLRIELNREMM+DKKLSMADIAEKINREFDDDL+CIFNDDNADKLILRIRI
Sbjct: 1200 IDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
             NDDAPKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+FD+SEGFK
Sbjct: 1260 TNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNKFDQSEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
            +D EWMLDTEGVNLLAV+CHEDVDATRTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1320 ADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AEAD
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEAD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
             LRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSY++ GLDFGMTPARSPISG
Sbjct: 1440 LLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPI-TDAQFSPYVGGMAF 434
            TPYHEGMMSPSYLLSPNIRASPI TDA FSPYVG MAF
Sbjct: 1499 TPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
            gi|241940227|gb|EES13372.1| hypothetical protein
            SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score = 2821 bits (7314), Expect = 0.0
 Identities = 1399/1538 (90%), Positives = 1466/1538 (95%), Gaps = 1/1538 (0%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKV  VQFGILSPDEIRQMSVVQ+EH ETMERGKPKP GLSDPR+GTI
Sbjct: 1    MDARFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRK+KCETCMA MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADED+ K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRLKRIYDACKSKK CA              EP+KK R GCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTD-EPVKK-RGGCGAQQPNIT 178

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            +DGMKMVAE+KAPKKKSD+Q+QLPEP ERKQILSAERVL+VLKRI+D+DCLLLGLNPK+A
Sbjct: 179  VDGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 238

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 239  RPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 298

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            +EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 299  TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 358

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 359  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 418

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            REDGQRLDLRY+KKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 419  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 478

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 479  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 538

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDT IEKDVFMNILMWW+DFDGKIPAPAILKPRP+WTGKQVFNLIIPKQI
Sbjct: 539  TLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQI 598

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NLIRFSAWH+E E G ITPGDT+VRIEKGELLSGTLCKK+LGT TGSLIH+IWEEVGPDA
Sbjct: 599  NLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDA 658

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TM+ IN+TI KAK++VKELIK A EKQ
Sbjct: 659  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQ 718

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LEAEPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 719  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 778

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 779  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 838

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 839  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 898

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK EF ++F+YELDD+NW P+YM PEHV+DLKTIREFRNVF+AEVQKLEADRY
Sbjct: 899  KLDSLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRY 958

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEIATTGD + PMPVNLKRLIWNAQKTF+ID RRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 959  QLGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVV 1018

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAP
Sbjct: 1019 PGDDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1078

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1079 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1138

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPEVN+KKELAKNVQCALEYTTLRSVTHATEIWYDPDP+ TIIEED +FV+SYYEMPDED
Sbjct: 1139 KPEVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDED 1198

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            I P+KISPWLLRIELNREMMVDKKLSMADIA+KINREFDDDL+CIFNDDNADKLILRIRI
Sbjct: 1199 IDPDKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNADKLILRIRI 1258

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N F + EGFK
Sbjct: 1259 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFK 1318

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
            +  EWMLDTEGVNLLAV+CHEDVDATRTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1319 AANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1378

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D
Sbjct: 1379 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1438

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            HLRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSY++ GLDFGMTPARSPISG
Sbjct: 1439 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISG 1497

Query: 544  TPYHEGMMSPSYLLSPNIRASPI-TDAQFSPYVGGMAF 434
            TPYHEGMMSPSYLLSPNIRASPI TDA FSPYVG MAF
Sbjct: 1498 TPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score = 2818 bits (7306), Expect = 0.0
 Identities = 1399/1538 (90%), Positives = 1463/1538 (95%), Gaps = 1/1538 (0%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKV  VQFGILSPDEIRQMSV+Q+EH ETMERGKPKP GLSDPR+GTI
Sbjct: 1    MDARFPYSPAEVAKVEFVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRK+KCETCMA MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADED+ K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRLKRIYDACKSKK CA              EPIKK R GCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTD-EPIKK-RGGCGAQQPNIT 178

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            +DGMKMVAE+KAPKKK+D+Q+QLPEP ERKQILSAERVL+VLKRI+D+DCLLLGLNPK+A
Sbjct: 179  VDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 238

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 239  RPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 298

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            +EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 299  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 358

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 359  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 418

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            REDGQRLDLRY+KKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 419  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 478

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 479  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 538

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDT IEKDVFMNILMWW+DFDGKIPAP ILKPRP+WTGKQVFNLIIPKQI
Sbjct: 539  TLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQI 598

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NLIRFSAWH+E E G ITPGDT+VRIEKGELLSGTLCKK+LGT +GSLIHVIWEEVGPDA
Sbjct: 599  NLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDA 658

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN+TISKAKN VKELIK A EKQ
Sbjct: 659  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQ 718

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LEAEPGRTMMESFEN+VNQVLNKARDDAGSSAQ SLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 719  LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQM 778

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 779  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 838

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 839  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 898

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK EF +VF+YELDD+NW P+YM PEHV+DLKTIREFRNVF+AEVQKLEADRY
Sbjct: 899  KLDSLKMKKPEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRY 958

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLG+EI TTGD + PMPVNLKRLIWNAQKTFKID RRPSDMHPMEIVEAIDKLQERLKVV
Sbjct: 959  QLGSEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVV 1018

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESRFLQSLVAP
Sbjct: 1019 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1078

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1079 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1138

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KP+VN+KKELAKNVQCALEYTTLRSVTHATEIWYDPDP+ TIIEED +FV+SYYEMPDED
Sbjct: 1139 KPQVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDTEFVQSYYEMPDED 1198

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            I P+KISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDL+CIFNDDNADKLILRIRI
Sbjct: 1199 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRI 1258

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N F + +GFK
Sbjct: 1259 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDDGFK 1318

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
            +  EWMLDTEGVNLLAV+CHEDVDATRTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1319 AANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1378

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D
Sbjct: 1379 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1438

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            HLRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSY++ GLDFGMTPARSPI+G
Sbjct: 1439 HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPITG 1497

Query: 544  TPYHEGMMSPSYLLSPNIRASPI-TDAQFSPYVGGMAF 434
            TPYHEGMMSPSYLLSPNIRASPI TDA FSPYVG MAF
Sbjct: 1498 TPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 2817 bits (7303), Expect = 0.0
 Identities = 1392/1539 (90%), Positives = 1473/1539 (95%), Gaps = 2/1539 (0%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKVR VQFGILSP+EIR MSVV+++H ETMERGKPKP+GLSDPR+GTI
Sbjct: 1    MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRKMKC+TC ANMAECPGHFGHLELAKPMFHIGFLKTVL+IMRCVCFNCS+ILADE+D +
Sbjct: 61   DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNG-CGAQQPNI 4508
            FKQALKIRNPK RLK++ D CK+K KC              +E +KK R+G CGAQQP I
Sbjct: 121  FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180

Query: 4507 TIDGMKMVAEYKAPKKKSDEQEQ-LPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPK 4331
            TI+GMKMVAEYK P+KK+DEQEQ LPEP ERKQ L+AE+VL+VLKRITD+DC LLGLNPK
Sbjct: 181  TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240

Query: 4330 FARPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAH 4151
            +ARPDWMILQV+        PSVMMDTSSRSEDDLTHQLAM+IRHNENL+RQE+NGAPAH
Sbjct: 241  YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300

Query: 4150 IISEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 3971
            IISEFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 301  IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360

Query: 3970 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 3791
            SARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY
Sbjct: 361  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 420

Query: 3790 IIREDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMP 3611
            IIREDGQRLDLRYLKKS DHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 421  IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 480

Query: 3610 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIV 3431
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIV
Sbjct: 481  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 540

Query: 3430 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 3251
            QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK
Sbjct: 541  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 600

Query: 3250 QINLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 3071
            QINLIR+SAWH+ESE G ITPGDT VRIE+GELLSGTLCKKTLGTS+GSLIHVIWEEVGP
Sbjct: 601  QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 660

Query: 3070 DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQE 2891
            DAARKFLGHTQWLVNYWLLQ AFSIGIGDTIADAATMEKINETISKAKN+VKELIK AQE
Sbjct: 661  DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE 720

Query: 2890 KQLEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 2711
            KQLEAEPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 721  KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 780

Query: 2710 QMTACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMG 2531
            QMTACVGQQNVEGKRIPFGFN+RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 781  QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 840

Query: 2530 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2351
            GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 841  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 900

Query: 2350 SQKLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEAD 2171
            SQKLDSLKMK+AEF +V+KYE+D +NW+PSYM PEHVEDLKTIREF+NVFDAEVQKLEAD
Sbjct: 901  SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD 960

Query: 2170 RYQLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLK 1991
            R+QLGTEI TTGD + PMPVNLKRLIWNAQK FK+DLRRPSDMHPMEIVEA+DKLQERLK
Sbjct: 961  RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK 1020

Query: 1990 VVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLV 1811
            VVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLTREAF+WVIGEIESRFLQSLV
Sbjct: 1021 VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1080

Query: 1810 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1631
            APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1140

Query: 1630 YLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPD 1451
            YLK EVNK KE AKNVQCALEYTTLRSVT ATE+WYDPDPMSTIIEEDVDFV+SYYEMPD
Sbjct: 1141 YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD 1200

Query: 1450 EDIAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRI 1271
            E++APEKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNA+KLILRI
Sbjct: 1201 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1260

Query: 1270 RIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEG 1091
            RIMND+APKGELQDES+EDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKIN+FDE+EG
Sbjct: 1261 RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG 1320

Query: 1090 FKSDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVIS 911
            FK ++EWMLDTEGVNLLAV+C+E+VDATRTTSNHLIEVI++LGIEAVRR+LLDELRVVIS
Sbjct: 1321 FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS 1380

Query: 910  FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 731
            FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE
Sbjct: 1381 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1440

Query: 730  ADHLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPI 551
            ADHLRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSYM+ G+DFGMTP+RSP+
Sbjct: 1441 ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYME-GMDFGMTPSRSPM 1499

Query: 550  SGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            +GTPYHEGMMSP YLLSPN+R+SPITDAQFSPYVGGMAF
Sbjct: 1500 TGTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537


>gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 2040

 Score = 2813 bits (7293), Expect = 0.0
 Identities = 1398/1538 (90%), Positives = 1464/1538 (95%), Gaps = 1/1538 (0%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKV+ VQFGILSPDEIRQMSVV +EH ETMERGK KP GLSDPR+GTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRK+KC+TCMA MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADEDD K
Sbjct: 61   DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRL+RIYDACKSKK CA             DEP+KK R GCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLRRIYDACKSKKICAGGDELEVQDQQDADEPVKK-RGGCGAQQPNIT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            +DGMKMVAE+KA KKKSD+Q+QLPEP ERKQILSAERVL+VLKRI+D+DCLLLGLNPKFA
Sbjct: 180  VDGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            +EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            REDGQRLDLRY+KKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGK+PAPAIL+PRP+WTGKQVFNLIIPK I
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NLIRFSAWHAE+E G ITPGDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETI  AKN+VKELIK AQEK 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKN 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKKAEF +VF+YELDD+NW P+YM P+HV+DLKTIREFRNVF+AEVQKLEADR 
Sbjct: 900  KLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRL 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEI TTGD T PMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV
Sbjct: 960  QLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+E+FEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPEV+KKKELAKNVQCALEYTTLRSVTHATEIWYDPDP+ TIIEEDV+FV+SYYEMPDED
Sbjct: 1140 KPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            I P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNADKLILR+RI
Sbjct: 1200 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+FDESEGFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNKFDESEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
             D EWMLDTEGVNLLAV+CHEDVD+TRTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG C LYLNDQMLQQAIELQLPSY++ GLD+GMTPARSP+S 
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVE-GLDYGMTPARSPMSA 1498

Query: 544  TPYHE-GMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPY + GMMSP  +LSPN RASPITDAQFSPYVGGMAF
Sbjct: 1499 TPYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534


>gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1861

 Score = 2808 bits (7279), Expect = 0.0
 Identities = 1395/1538 (90%), Positives = 1463/1538 (95%), Gaps = 1/1538 (0%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            M  RFPYSPA+VAKV+ VQFGILSPDEIRQMSVV +EH ETMERGK KP GLSDPR+GTI
Sbjct: 1    MAARFPYSPAEVAKVKLVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRK+KC+TCMA MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE+D K
Sbjct: 61   DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEEDTK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRL+RIYDACKSKK CA             DEP+KK R GCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNRLRRIYDACKSKKICAGGDELEVQDQQDADEPVKK-RGGCGAQQPNIT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            +DGMKMVAE+KA KKKSD+Q+QLPEP ERKQILSAERVL+VLKRI+D+DCLLLGLNPK+A
Sbjct: 180  VDGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            +EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            REDGQRLDLRY+KKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGK+PAPAIL+PRP+WTGKQVFNLIIPK I
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NLIRFSAWHAE+E G ITPGDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETI  AKN+VKELIK AQEK 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKN 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKKAEF +VF+YELDD+NW P+YM P+HV+DLKTIREFRNVF+AEVQKLEADR 
Sbjct: 900  KLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRL 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEI TTGD T PMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV
Sbjct: 960  QLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+E+FEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPEV+KKKELAKNVQCALEYTTLRSVTHATEIWYDPDP+ TIIEEDV+FV+SYYEMPDED
Sbjct: 1140 KPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            I P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNADKLILR+RI
Sbjct: 1200 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+FDESEGFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNKFDESEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
             D EWMLDTEGVNLLAV+CHEDVD+TRTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG C LYLNDQMLQQAIELQLPSY++ GLD+GMTPARSP+S 
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVE-GLDYGMTPARSPMSA 1498

Query: 544  TPYHE-GMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPY + GMMSP  +LSPN RASPITDAQFSPYVGGMAF
Sbjct: 1499 TPYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534


>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score = 2806 bits (7275), Expect = 0.0
 Identities = 1393/1538 (90%), Positives = 1465/1538 (95%), Gaps = 1/1538 (0%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKV+ VQFGILSPDEIRQMSVV +EH ETMERGK KP GLSDPR+GTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRK+KC+TCMA MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE++ K
Sbjct: 61   DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEEETK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPK+RL+RIYDACKSKK CA             DEP+KK R+GCGAQQPNIT
Sbjct: 121  FKQALKIRNPKHRLRRIYDACKSKKICAGGDELDVQDQQDTDEPVKK-RSGCGAQQPNIT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            +DGMKMVAE+KA KKKSD+Q+QLPEP ERKQILSAERVL+VLKRI+D+DCLLLGLNPK+A
Sbjct: 180  VDGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLR+QERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            +EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            REDGQRLDLRY+KKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGK+PAPAIL+PRP+WTGKQVFNLIIPK I
Sbjct: 540  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILRPRPIWTGKQVFNLIIPKLI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NLIRFSAWHAE+E G ITPGDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKINETI  AKN+VKELIK AQEK 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETIGTAKNEVKELIKQAQEKN 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKKAEF +VF+YELDD+NW P+YM P+HV+DLKTIREFRNVF+AEVQKLEADR 
Sbjct: 900  KLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEVQKLEADRL 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEI TTGD T PMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV
Sbjct: 960  QLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+E+FEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPEV+KKKELAKNVQCALEYTTLRSVTHATEIWYDPDP+ TIIEEDV+FV+SYYEMPDED
Sbjct: 1140 KPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            I P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNADKLILR+RI
Sbjct: 1200 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+FDESEGFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNKFDESEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
             D EWMLDTEGVNLLAV+CHEDVD+TRTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG C LYLNDQMLQQAIELQLPSY++ GLD+GMTPARSP+S 
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVE-GLDYGMTPARSPMSA 1498

Query: 544  TPYHE-GMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPY + GMMSP  +LSPN RASPITDAQFSPYVGGMAF
Sbjct: 1499 TPYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534


>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Brachypodium distachyon]
          Length = 1862

 Score = 2796 bits (7249), Expect = 0.0
 Identities = 1386/1538 (90%), Positives = 1461/1538 (94%), Gaps = 1/1538 (0%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKV+ VQFGILSPDEIRQMSVV +E+ ETME+GK KP GLSDPR+GTI
Sbjct: 1    MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEYAETMEKGKAKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRK+KC+TCMA MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADEDDAK
Sbjct: 61   DRKVKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDAK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKN+L+RIYDACKSKK CA             DEP+KK R GCGAQQPNIT
Sbjct: 121  FKQALKIRNPKNKLRRIYDACKSKKICAGGDDLEVEDQQDTDEPVKKKRGGCGAQQPNIT 180

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            +DGMKMVAE+K  KKK+D+Q+QLPEP ERKQILSAERVL+VLKRI+D+DCLLLGLNPKFA
Sbjct: 181  VDGMKMVAEFKQTKKKNDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 240

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 300

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            +EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  TEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            REDGQRLDLRY+KKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 421  REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQ+NRPVMGIVQD
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDT IEKDVFMNILMWWEDFDGK+PAPAILKPRP+WTGKQVFNLIIPK I
Sbjct: 541  TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKLI 600

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NLIRFSAWHAESE G ITPGDT+VRIEKGELLSGTLCKKTLGT TGSLIHVIWEEVGPDA
Sbjct: 601  NLIRFSAWHAESESGFITPGDTMVRIEKGELLSGTLCKKTLGTGTGSLIHVIWEEVGPDA 660

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKINETISKAK++V ELIK AQ+K 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKSEVTELIKQAQDKL 720

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMMESFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 721  LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTK+D+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFVDRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 900

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKKAEF +V++YELDD+NW P+YM PEHV+DLKTIREFRNVF+AEVQKLEADR 
Sbjct: 901  KLDSLKMKKAEFDNVYRYELDDENWRPTYMLPEHVDDLKTIREFRNVFEAEVQKLEADRL 960

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEI TTGD + PMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV
Sbjct: 961  QLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1020

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+E+FEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 1080

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1140

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPEV+KKKELAKNVQCALEYTTLRSVTHATEIWYDPDP+ TIIEED+DFVKSYYEMPDED
Sbjct: 1141 KPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDMDFVKSYYEMPDED 1200

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            I P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNADKLILR+RI
Sbjct: 1201 IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1260

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
             ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKIN+FDE++GFK
Sbjct: 1261 TNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKINKFDENDGFK 1320

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
             D EWMLDTEGVNLLAV+CHEDVDATRTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1321 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+D
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1440

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG C LYLNDQMLQQAIELQLPSY++G    GMTPAR+  SG
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLEYIGMTPARASPSG 1500

Query: 544  TPYHE-GMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYH+ GMMSP  +LSPN R+SPI+DAQFSPYVGGMAF
Sbjct: 1501 TPYHDGGMMSP--MLSPNFRSSPISDAQFSPYVGGMAF 1536


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 2784 bits (7218), Expect = 0.0
 Identities = 1382/1537 (89%), Positives = 1448/1537 (94%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKVR VQFGILSPDEIRQMSVVQ+EHGET ERGKPK AGLSDPR+GTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL IMR VCFNCSKIL DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQAL+I+NPKNRL++I DACK+K KC               +P+KK+R GCGAQQP I+
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSD-QPVKKSRGGCGAQQPKIS 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            I+GMKM AEYKA +KK+D+ EQLPEP ERKQ L+AERVL +LKRITD+DC LLGLNPK+A
Sbjct: 180  IEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            SEFAQLLQFHIATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            R+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDTFI KDVFMN LMWWEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NL R SAWH+ESE G ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKN+VK LIK AQE+ 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK EF  +F+YE +D+NW P+YM PEHVEDLKTIREFRNVF+AEVQKLEADRY
Sbjct: 900  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEIATTG+ + PMPVNLKRLI NAQKTFKID RR SDMHPMEIVEAIDKLQERLKVV
Sbjct: 960  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PG+D LS+EAQKNATL FNILLRSTFASKRVL EYRLTREAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPE NK KE AK VQCALEYTTLRSVT ATE+WYDPDPMSTIIEED+DFVKSYYEMPDE+
Sbjct: 1140 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            IAPEKISPWLLRIELNREMMVDKKLSMA+IAEKIN EFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+FDE+EGFK
Sbjct: 1260 MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
             ++EWMLDTEGVNLLAV+ HEDVDA RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            HLRGVTENIMLGQLAPIGTG CALYLND+ML+ AIELQLPSY+D GLDFGMTP+RSPISG
Sbjct: 1440 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYHEGMMSP+YLLSPN+R SPI+DAQFSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 2784 bits (7218), Expect = 0.0
 Identities = 1382/1537 (89%), Positives = 1448/1537 (94%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFPYSPA+VAKVR VQFGILSPDEIRQMSVVQ+EHGET ERGKPK AGLSDPR+GTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL IMR VCFNCSKIL DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQAL+I+NPKNRL++I DACK+K KC               +P+KK+R GCGAQQP I+
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSD-QPVKKSRGGCGAQQPKIS 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            I+GMKM AEYKA +KK+D+ EQLPEP ERKQ L+AERVL +LKRITD+DC LLGLNPK+A
Sbjct: 180  IEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            SEFAQLLQFHIATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            R+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDTFI KDVFMN LMWWEDFDGKIPAPAILKP+PLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NL R SAWH+ESE G ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKN+VK LIK AQE+ 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK EF  +F+YE +D+NW P+YM PEHVEDLKTIREFRNVF+AEVQKLEADRY
Sbjct: 900  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEIATTG+ + PMPVNLKRLI NAQKTFKID RR SDMHPMEIVEAIDKLQERLKVV
Sbjct: 960  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PG+D LS+EAQKNATL FNILLRSTFASKRVL EYRLTREAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPE NK KE AK VQCALEYTTLRSVT ATE+WYDPDPMSTIIEED+DFVKSYYEMPDE+
Sbjct: 1140 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            IAPEKISPWLLRIELNREMMVDKKLSMA+IAEKIN EFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+FDE+EGFK
Sbjct: 1260 MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
             ++EWMLDTEGVNLLAV+ HEDVDA RTTSNHLIEVIE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1320 PEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            HLRGVTENIMLGQLAPIGTG CALYLND+ML+ AIELQLPSY+D GLDFGMTP+RSPISG
Sbjct: 1440 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYHEGMMSP+YLLSPN+R SPI+DAQFSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 2778 bits (7200), Expect = 0.0
 Identities = 1379/1537 (89%), Positives = 1448/1537 (94%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFP+SPA+VAKVR VQFGILSPDEIRQMSVVQ+EH ETM  GKPK AGLSDPR+GTI
Sbjct: 1    MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKIL DEDD K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQAL+I++PKNRLK+I DACK+K KC              +EP+KK+R GCGAQQP ++
Sbjct: 121  FKQALRIKSPKNRLKKILDACKNKTKC-DGGDEIDVQGQESEEPVKKSRGGCGAQQPKLS 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            I+GMKM AEYKA +KKSD+QEQLPEP ERKQ L+AERVLSVLKRI+D+D  LLGLNPK+A
Sbjct: 180  IEGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            SEFAQLLQFHIATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            R+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NL R SAWH+E+E G+ITPGDT VRIEKGELL+GTLCKK LGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKN+VK+LI  AQ KQ
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQ 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LEAEPGRTMM+SFENKVNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIP+GF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK+EF   F YELDD+NWNP YM  EHVEDLKTIREFRNVFDAEVQKLE DR 
Sbjct: 900  KLDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRL 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEIA TGD + P+PVNLKRLIWNAQKTFKID RR SDMHPMEIVEAIDKLQERLKVV
Sbjct: 960  QLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD LS+EAQKNATL F+ILLRSTFASKRVL EYRLTREAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPE NK KE AKNVQCALEYTTLRSVT ATE+WYDPDPMSTIIEEDVDFV SYYEMPDE+
Sbjct: 1140 KPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEE 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1200 VNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
            MN +APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+FD +EGFK
Sbjct: 1260 MNAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
            ++ EWMLDTEGVNLLAV+CH+DVDA RTTSNHLIE++EILGIEAVRRSLLDELRVVISFD
Sbjct: 1320 AEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG CALYLND+ML+ AIELQLPSYMD GLDFGMTP+RSP+SG
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMD-GLDFGMTPSRSPVSG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYHEGMMSP+YLLSPN+R SPI+DAQFSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 2776 bits (7195), Expect = 0.0
 Identities = 1373/1537 (89%), Positives = 1444/1537 (93%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFP+SP +VAKVR VQFGILSPDEIRQMSVVQ+EH ETM  GKPK AGLSDPR+GTI
Sbjct: 1    MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKIL DEDD K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FK AL+I+NPKNRLK+I DACK+K KC               EP+KK+R GCGAQQP +T
Sbjct: 121  FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQDTD---EPLKKSRGGCGAQQPKLT 177

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            IDGMKMVAEYKA +KKSD+QEQLPEP ERKQ L+AERVLSVLKRI+D+DC LLGLNPK+A
Sbjct: 178  IDGMKMVAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYA 237

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHII
Sbjct: 238  RPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 297

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            SEFAQLLQFHIATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 298  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 357

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 358  RTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 417

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            R+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 418  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 477

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 478  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 537

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQI
Sbjct: 538  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 597

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NL R SAWH+ESE G+ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDA
Sbjct: 598  NLQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDA 657

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKN+VKELI  AQ K 
Sbjct: 658  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSKS 717

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMM+SFENKVNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 718  LEPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 777

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIP+GF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 778  TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 837

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 838  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 897

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK EF   F Y  DD+NWNP YM PEHVEDLKTIREFRNVFDAEV KLE DR 
Sbjct: 898  KLDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETDRL 957

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QLGTEIA TGD + P+PVNLKRLIWNAQKTFKID RR SDMHPMEIVEAIDKLQERL+VV
Sbjct: 958  QLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVV 1017

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PGDD LS+EAQKNATL FNILLRSTFASKRVL+EYRLTREAFEWVIGEIESRFLQSLVAP
Sbjct: 1018 PGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAP 1077

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1078 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1137

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KPE NK KE AKNVQCALEYTTLRSVT ATE+WYDPDPMST+IEED+DFV+SYYEMPDE+
Sbjct: 1138 KPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEE 1197

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            + P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFD DLTCIFNDDNA+KLILRIRI
Sbjct: 1198 VNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRIRI 1257

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
            MN++ PKG+ QDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+FD++EGFK
Sbjct: 1258 MNEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFK 1317

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
            ++ EWMLDTEGVNLLAV+CH+DVDA RTTSNHLIE+IE+LGIEAVRRSLLDELRVVISFD
Sbjct: 1318 AEQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFD 1377

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA+VFAE D
Sbjct: 1378 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAETD 1437

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            HLRGVTENIMLGQLAPIGTG CALYLND+ML+ AIELQLPSY+D GLDFGMTP+RSP+SG
Sbjct: 1438 HLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVD-GLDFGMTPSRSPVSG 1496

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TP+ +GMMSP+YLLSPN+R SPI+DAQFSPYVGGMAF
Sbjct: 1497 TPFRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score = 2775 bits (7193), Expect = 0.0
 Identities = 1371/1537 (89%), Positives = 1452/1537 (94%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MD RFP+SPA+VAKVR VQFGILSPDEIRQMSVVQ+EHGET ERGKPK  GLSDPR+GTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRK+KCETC A+MAECPGHFGHLELAKPMFHIGFLKTVL IMRCVCFNCSKILADE+D K
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQAL+IRNPKNRLK+I DACK+K KC               EP+KK+R GCGAQQP IT
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTD-EPVKKSRGGCGAQQPKIT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            I+GMKM+AEYKA +KKSD+QEQLPEP ERKQ LSAERVL VLKRI+D+DC LLGLNPK+A
Sbjct: 180  IEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            SEFAQLLQFHIATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            R+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDTFI KDVFMNILMWWEDFDGK+PAPAILKP PLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NLIR+S+WH+ESE GSITPGDT+VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA+TME IN+TIS AK  VK+LI+ AQEK+
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKK 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LEAEPGRTMM+SFEN+VNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIP+GF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
            KLDSLKMKK EF  VF+YE DD+NW P+YM  E VEDLKTIREFRNVF+AEVQKLEADRY
Sbjct: 900  KLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRY 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QL TEIATTGD ++P+PVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEAIDKLQERLKVV
Sbjct: 960  QLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PG+D LS EAQKNATLLFNILLRSTFASKRVL+EYRL+REAFEWV+GEIESRFLQSLVA 
Sbjct: 1020 PGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVAS 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            + +V K KE AK+VQCALEYTTLRSVT ATE+WYDPDPMSTIIEED DFVKSYYEMPDE+
Sbjct: 1140 RSDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEE 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            +A EKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1200 VALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
            MND+APKGE+QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ K+ +FDE++GFK
Sbjct: 1260 MNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
             + EWMLDTEGVNLLAV+CHEDVDATRTTSNHLIEVIE+LGIEAVRR+LLDELRVVISFD
Sbjct: 1320 PNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG CALYLND+ML+ AIELQLPSYMD GLDFGMTPARSPISG
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD-GLDFGMTPARSPISG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYHEG+MSPSYLLSPN+R SP +DAQFSPYVGGMAF
Sbjct: 1499 TPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 2774 bits (7192), Expect = 0.0
 Identities = 1368/1537 (89%), Positives = 1450/1537 (94%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MDTRFPYSPA+VAKVR VQFGILSPDEIRQMSVVQ+EHGET ERGKPKP GLSDPR+GTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKILADEDD K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRLK+I DACK+K KC               EP+KK + GCGAQQP +T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKKNKGGCGAQQPKLT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            I+GMKM+AEYKA +KK+D+QEQLPEP ERKQ L+AERVL VLKRI+D+DC LLGLNPK+A
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            SEFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            R+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NL R +AWHA+++ G +T GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TISKAKN+VK LIK AQ+K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMMESFENKVNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
             LDSLKMKK+EF   F++E+D++NWNP+YM  E+++DLKTI+E R+VFDAEVQKLEADRY
Sbjct: 900  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QL TEIAT+GD + P+PVNLKRLIWNAQKTFK+D RRPSDMHPME+VEA+DKLQERLKVV
Sbjct: 960  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PG+D LS+EAQKNATL FNILLRSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KP VN  KE AKNVQCALEYTTLRSVT ATE+WYDPDPM TIIEEDV+FVKSYYEMPDED
Sbjct: 1140 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            IAPEKISPWLLRIELNREMMVDKKLSMA +AEKIN+EFDDDLTCIFNDDNADKLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK  ++D++EGFK
Sbjct: 1260 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
            S+ EWMLDTEGVNLLAV+CHEDVDA RTTSNHLIE+IE+LGIEAVRR+LLDELRVVISFD
Sbjct: 1320 SEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYM+ GL+FGMTPARSP+SG
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYH+GMMSP YL SPN+R SP+TDAQFSPYVGGMAF
Sbjct: 1499 TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 2774 bits (7192), Expect = 0.0
 Identities = 1368/1537 (89%), Positives = 1450/1537 (94%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MDTRFPYSPA+VAKVR VQFGILSPDEIRQMSVVQ+EHGET ERGKPKP GLSDPR+GTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKILADEDD K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRLK+I DACK+K KC               EP+KK + GCGAQQP +T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKKNKGGCGAQQPKLT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            I+GMKM+AEYKA +KK+D+QEQLPEP ERKQ L+AERVL VLKRI+D+DC LLGLNPK+A
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            SEFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            R+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NL R +AWHA+++ G +T GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TISKAKN+VK LIK AQ+K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMMESFENKVNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
             LDSLKMKK+EF   F++E+D++NWNP+YM  E+++DLKTI+E R+VFDAEVQKLEADRY
Sbjct: 900  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QL TEIAT+GD + P+PVNLKRLIWNAQKTFK+D RRPSDMHPME+VEA+DKLQERLKVV
Sbjct: 960  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PG+D LS+EAQKNATL FNILLRSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KP VN  KE AKNVQCALEYTTLRSVT ATE+WYDPDPM TIIEEDV+FVKSYYEMPDED
Sbjct: 1140 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            IAPEKISPWLLRIELNREMMVDKKLSMA +AEKIN+EFDDDLTCIFNDDNADKLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK  ++D++EGFK
Sbjct: 1260 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
            S+ EWMLDTEGVNLLAV+CHEDVDA RTTSNHLIE+IE+LGIEAVRR+LLDELRVVISFD
Sbjct: 1320 SEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYM+ GL+FGMTPARSP+SG
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYH+GMMSP YL SPN+R SP+TDAQFSPYVGGMAF
Sbjct: 1499 TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 2774 bits (7192), Expect = 0.0
 Identities = 1368/1537 (89%), Positives = 1450/1537 (94%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MDTRFPYSPA+VAKVR VQFGILSPDEIRQMSVVQ+EHGET ERGKPKP GLSDPR+GTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKILADEDD K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRLK+I DACK+K KC               EP+KK + GCGAQQP +T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKKNKGGCGAQQPKLT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            I+GMKM+AEYKA +KK+D+QEQLPEP ERKQ L+AERVL VLKRI+D+DC LLGLNPK+A
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            SEFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            R+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NL R +AWHA+++ G +T GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TISKAKN+VK LIK AQ+K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMMESFENKVNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
             LDSLKMKK+EF   F++E+D++NWNP+YM  E+++DLKTI+E R+VFDAEVQKLEADRY
Sbjct: 900  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QL TEIAT+GD + P+PVNLKRLIWNAQKTFK+D RRPSDMHPME+VEA+DKLQERLKVV
Sbjct: 960  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PG+D LS+EAQKNATL FNILLRSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KP VN  KE AKNVQCALEYTTLRSVT ATE+WYDPDPM TIIEEDV+FVKSYYEMPDED
Sbjct: 1140 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            IAPEKISPWLLRIELNREMMVDKKLSMA +AEKIN+EFDDDLTCIFNDDNADKLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK  ++D++EGFK
Sbjct: 1260 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
            S+ EWMLDTEGVNLLAV+CHEDVDA RTTSNHLIE+IE+LGIEAVRR+LLDELRVVISFD
Sbjct: 1320 SEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYM+ GL+FGMTPARSP+SG
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYH+GMMSP YL SPN+R SP+TDAQFSPYVGGMAF
Sbjct: 1499 TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score = 2774 bits (7192), Expect = 0.0
 Identities = 1368/1537 (89%), Positives = 1450/1537 (94%)
 Frame = -2

Query: 5044 MDTRFPYSPADVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKPAGLSDPRMGTI 4865
            MDTRFPYSPA+VAKVR VQFGILSPDEIRQMSVVQ+EHGET ERGKPKP GLSDPR+GTI
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60

Query: 4864 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEDDAK 4685
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKILADEDD K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120

Query: 4684 FKQALKIRNPKNRLKRIYDACKSKKKCAXXXXXXXXXXXXXDEPIKKTRNGCGAQQPNIT 4505
            FKQALKIRNPKNRLK+I DACK+K KC               EP+KK + GCGAQQP +T
Sbjct: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKKNKGGCGAQQPKLT 179

Query: 4504 IDGMKMVAEYKAPKKKSDEQEQLPEPAERKQILSAERVLSVLKRITDDDCLLLGLNPKFA 4325
            I+GMKM+AEYKA +KK+D+QEQLPEP ERKQ L+AERVL VLKRI+D+DC LLGLNPK+A
Sbjct: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239

Query: 4324 RPDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 4145
            RPDWMILQVL        PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 240  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299

Query: 4144 SEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 3965
            SEFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359

Query: 3964 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 3785
            RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
Sbjct: 360  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419

Query: 3784 REDGQRLDLRYLKKSSDHHLELGYKVERHLCDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 3605
            R+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479

Query: 3604 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQD 3425
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539

Query: 3424 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI 3245
            TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQI
Sbjct: 540  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 599

Query: 3244 NLIRFSAWHAESEVGSITPGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 3065
            NL R +AWHA+++ G +T GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
Sbjct: 600  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659

Query: 3064 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKELIKLAQEKQ 2885
            ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TISKAKN+VK LIK AQ+K 
Sbjct: 660  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 719

Query: 2884 LEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2705
            LE EPGRTMMESFENKVNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779

Query: 2704 TACVGQQNVEGKRIPFGFNERTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 2525
            TACVGQQNVEGKRIPFGF +RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839

Query: 2524 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2345
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 899

Query: 2344 KLDSLKMKKAEFVHVFKYELDDDNWNPSYMQPEHVEDLKTIREFRNVFDAEVQKLEADRY 2165
             LDSLKMKK+EF   F++E+D++NWNP+YM  E+++DLKTI+E R+VFDAEVQKLEADRY
Sbjct: 900  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 959

Query: 2164 QLGTEIATTGDVTMPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1985
            QL TEIAT+GD + P+PVNLKRLIWNAQKTFK+D RRPSDMHPME+VEA+DKLQERLKVV
Sbjct: 960  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1019

Query: 1984 PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP 1805
            PG+D LS+EAQKNATL FNILLRSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAP
Sbjct: 1020 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1079

Query: 1804 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1625
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1139

Query: 1624 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVDFVKSYYEMPDED 1445
            KP VN  KE AKNVQCALEYTTLRSVT ATE+WYDPDPM TIIEEDV+FVKSYYEMPDED
Sbjct: 1140 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1199

Query: 1444 IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLTCIFNDDNADKLILRIRI 1265
            IAPEKISPWLLRIELNREMMVDKKLSMA +AEKIN+EFDDDLTCIFNDDNADKLILRIRI
Sbjct: 1200 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1259

Query: 1264 MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINRFDESEGFK 1085
            MND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK  ++D++EGFK
Sbjct: 1260 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFK 1319

Query: 1084 SDVEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEILGIEAVRRSLLDELRVVISFD 905
            S+ EWMLDTEGVNLLAV+CHEDVDA RTTSNHLIE+IE+LGIEAVRR+LLDELRVVISFD
Sbjct: 1320 SEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1379

Query: 904  GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAEAD 725
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1439

Query: 724  HLRGVTENIMLGQLAPIGTGSCALYLNDQMLQQAIELQLPSYMDGGLDFGMTPARSPISG 545
            +LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYM+ GL+FGMTPARSP+SG
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSG 1498

Query: 544  TPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 434
            TPYH+GMMSP YL SPN+R SP+TDAQFSPYVGGMAF
Sbjct: 1499 TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535