BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00003030
         (2930 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006838849.1| hypothetical protein AMTR_s00002p00265220 [A...   879   0.0  
gb|EMJ28219.1| hypothetical protein PRUPE_ppa001134mg [Prunus pe...   875   0.0  
ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...   870   0.0  
emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]   867   0.0  
gb|EOY05900.1| CRM family member 3A isoform 1 [Theobroma cacao]       866   0.0  
ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Popu...   856   0.0  
ref|XP_004495335.1| PREDICTED: chloroplastic group IIA intron sp...   850   0.0  
ref|XP_002517017.1| conserved hypothetical protein [Ricinus comm...   849   0.0  
ref|XP_004291748.1| PREDICTED: chloroplastic group IIA intron sp...   837   0.0  
ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron sp...   836   0.0  
ref|XP_004247646.1| PREDICTED: chloroplastic group IIA intron sp...   834   0.0  
ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron sp...   832   0.0  
ref|XP_006352117.1| PREDICTED: chloroplastic group IIA intron sp...   831   0.0  
ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citr...   831   0.0  
ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citr...   831   0.0  
gb|EOY05902.1| CRM family member 3A isoform 3 [Theobroma cacao]       830   0.0  
ref|XP_003590782.1| Chloroplastic group IIA intron splicing faci...   829   0.0  
ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron sp...   825   0.0  
gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [O...   821   0.0  
tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]                   820   0.0  

>ref|XP_006838849.1| hypothetical protein AMTR_s00002p00265220 [Amborella trichopoda]
            gi|548841355|gb|ERN01418.1| hypothetical protein
            AMTR_s00002p00265220 [Amborella trichopoda]
          Length = 882

 Score =  879 bits (2270), Expect = 0.0
 Identities = 465/806 (57%), Positives = 581/806 (72%), Gaps = 36/806 (4%)
 Frame = +2

Query: 68   LHPCALLDSLHASFSRLRSPRFLVVR-RFSAVSPSLRSLRERSDRPKAHRFPEND----- 229
            L+P ALLDSLH+++SR    R  + R + + VS  L ++    D     +   N      
Sbjct: 9    LYPTALLDSLHSTWSRFNGSRLQITRLQRTHVSSYLNTITNSKDLESPEKISPNPHCNGV 68

Query: 230  ------LQRPPWINGWRGPSFRPFPKWPPSAVDYR-HGLSSD--------DEEFXXXXXX 364
                    +  WI+ W G   R  PK P + +DYR +G+SSD        D+E       
Sbjct: 69   IAEKTTQVQGHWIHKWTGSQCRNLPKRPKAVLDYRDNGVSSDEQEDINSKDDELGFEEEA 128

Query: 365  XXXXXXXIVEKLKKFGYIDDSEE-VKESPLPEKGSVEDIFYAEDGILPDSRGGLSFDL-- 535
                   IV+KLK+FG++D+ +  +     PE+GSVED+FYAE G+LP+SRGGLS D   
Sbjct: 129  EKSTMDQIVDKLKRFGFMDERKTGLDMERRPERGSVEDVFYAEPGVLPNSRGGLSLDSPN 188

Query: 536  ------NEEIRFPWEKPSEADNVAPARKKRTKTSLAELTLPEGELRRLRHMAIRTKSRTK 697
                  N E+RFPW++          RK R++TSLAELTLP  E+RRL ++A+R K RTK
Sbjct: 189  GVLERENGEVRFPWQRE------VSVRKTRSRTSLAELTLPASEIRRLTNLALRMKGRTK 242

Query: 698  IKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSIS 877
            IKGAGVT+ IVD IH+KWK+EE+VR+KCEG P LNMKR HEILERKTGGLVIWRSG+SI 
Sbjct: 243  IKGAGVTQAIVDSIHKKWKSEEIVRIKCEGAPTLNMKRSHEILERKTGGLVIWRSGSSIV 302

Query: 878  LYRGVTYEIP--QPVKIRYQSPERAGLNSFKRDTYSLAQASEFSRGNHMEDFHECVSAEV 1051
            LYRG+ Y++   +P K + Q       N    D  +    SE      ++ F E     +
Sbjct: 303  LYRGINYDVSDEKPAKKQTQVNRNFNRNGSAIDEVN-GSFSESVSSRDLQRFPEEKGVNI 361

Query: 1052 DKRKDLQLPPESHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILP 1231
            + + + + P + +Y+KE+D+LL+ LGPRY DW G  P PVDADLLPGVVPGY+PPFR+LP
Sbjct: 362  ENKTETEPPNKVNYEKEVDQLLEGLGPRYNDWAGCDPLPVDADLLPGVVPGYKPPFRLLP 421

Query: 1232 YGVKRTLGLKEGTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQ 1411
            YG++ +LG  E T LRRL+RVLPPHFALGRSR+HQGLA A+VK+WEKSSI KI+LKRGVQ
Sbjct: 422  YGMRFSLGRTEMTTLRRLARVLPPHFALGRSRQHQGLAVAMVKVWEKSSIVKIALKRGVQ 481

Query: 1412 LTSSERMAEEIKKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQ 1591
             T  ERMAE+IK LTGG +LSRNKD++V YRGKDFLSPE+TEALLERERLAK LQDEEE 
Sbjct: 482  NTCGERMAEQIKSLTGGTLLSRNKDFMVFYRGKDFLSPEVTEALLERERLAKALQDEEEN 541

Query: 1592 ARLRASSSVALNDMSVI----EPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEMTRH 1759
            ARL A++S+ ++D+S      EP  +GTL ETLEA ARWG ++D +   KM++AAE TRH
Sbjct: 542  ARLYATASI-ISDVSTTTAKEEPRFSGTLSETLEASARWGKNLDSEEKEKMIKAAEATRH 600

Query: 1760 ANIVRKLERNLLIAEQKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGLRMK 1939
            A +VRKLER L +A+QK  +A + LAKVEE LKP +  +D E IT+EERFMFRKLGLRMK
Sbjct: 601  AGLVRKLERKLDLAQQKAMRAEKALAKVEEFLKPTDQSRDQESITDEERFMFRKLGLRMK 660

Query: 1940 AFLLLGRRGVFDGTIENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVSVDK 2119
            A+LLLG+RGVFDGT+ENMHLHWKYREL+KII+KAK F  VKN+AL+LEAESGG+LVSVDK
Sbjct: 661  AYLLLGKRGVFDGTVENMHLHWKYRELIKIILKAKNFGHVKNIALSLEAESGGILVSVDK 720

Query: 2120 VSKGFAIVVYRGRDYHRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVDQLR 2299
            +SKG+AI+VYRG+ Y RP  LRP+NLLTKRKALARSIELQRREALN HISNLQK+V  L+
Sbjct: 721  ISKGYAIIVYRGKGYKRPRLLRPQNLLTKRKALARSIELQRREALNNHISNLQKRVQTLK 780

Query: 2300 SELAQMDLAKDQGDEELYAKLDSAYC 2377
            SELAQM+  K++GDE+LYAKLDS YC
Sbjct: 781  SELAQMESIKEKGDEDLYAKLDSVYC 806


>gb|EMJ28219.1| hypothetical protein PRUPE_ppa001134mg [Prunus persica]
          Length = 899

 Score =  875 bits (2261), Expect = 0.0
 Identities = 474/839 (56%), Positives = 594/839 (70%), Gaps = 46/839 (5%)
 Frame = +2

Query: 65   QLHPCALLDSLHASFSRLRSPRFLVVRRFSAV------------------SPSLRSLRE- 187
            QL+P +L DS  +SFS+   P   + R  S++                  +P    LR+ 
Sbjct: 8    QLYPTSLFDSFQSSFSKFHGPHIHLFRCGSSIPFKKHTFYATHYTISSTLNPEQNPLRKS 67

Query: 188  ---RSDRPKAHRFPENDLQRPPWINGWRGPSFRPFPKWPPSAVDYRHGLSSD-------D 337
               R ++P +   P+ +     WI+ W        PK P + +DY+   S +       +
Sbjct: 68   NFVRKNQPISQYKPKKNFSSSSWIDKWNESHKHNRPKPPRAVLDYQSSESGNLSGSGYAE 127

Query: 338  EEFXXXXXXXXXXXXXIVEKLKKFGYIDDSEEVK---ESPLPEKGSVEDIFYAEDGILPD 508
             +              IVEKLKKFGY+DDS E K      + EKGSVEDIFY E+G+LP+
Sbjct: 128  GDGGGGRNSSGSTMEKIVEKLKKFGYVDDSNENKGEVRDSVIEKGSVEDIFYIEEGMLPN 187

Query: 509  SRGGLS----------FDLNEEIRFPWEKPSEADNVAPAR-KKRTKTSLAELTLPEGELR 655
            SRGG S          F  + ++RFPWEKP E +       +++++TSLAELTLPE ELR
Sbjct: 188  SRGGFSEESPLGIENVFGGDGKVRFPWEKPKEEEKQEEGSVRRKSRTSLAELTLPESELR 247

Query: 656  RLRHMAIRTKSRTKIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILERK 835
            RL ++  + K +T+I G GVT+ +V++IHE+WKT E+VRLK EGPPALNMKRMHEILERK
Sbjct: 248  RLTNLTFQKKHKTRIGGGGVTQAVVEMIHERWKTSEIVRLKIEGPPALNMKRMHEILERK 307

Query: 836  TGGLVIWRSGTSISLYRGVTYEIPQPVKIRYQSPERAGLNSFKRDTY---SLAQASEFSR 1006
            TGGLVIWRSGTS+SLYRGV+YE+P  VK+  +  ++  ++S    T    S+   +E + 
Sbjct: 308  TGGLVIWRSGTSLSLYRGVSYEVPS-VKLNKRIYKKNDISSAPLPTVADKSVGDFAELAS 366

Query: 1007 GNHMEDFHECVSAEVDKRKDLQLPPESHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLL 1186
             ++++   E       +++D +   E  Y+ E+DKLLD LGPR+ DWPG  P PVDAD+L
Sbjct: 367  YSNVKTPQEKSENTSQEKEDTEQLAEVKYEDEVDKLLDSLGPRFKDWPGCDPLPVDADML 426

Query: 1187 PGVVPGYEPPFRILPYGVKRTLGLKEGTALRRLSRVLPPHFALGRSRRHQGLASAIVKLW 1366
            PG+VPGY+PPFR+LPYGV+ TLGLKE T+LRRL+RVLPPHFALGRSR+ QGLA A+ KLW
Sbjct: 427  PGIVPGYQPPFRVLPYGVRSTLGLKEATSLRRLARVLPPHFALGRSRQLQGLAVAMAKLW 486

Query: 1367 EKSSIAKISLKRGVQLTSSERMAEEIKKLTGGAILSRNKDYIVIYRGKDFLSPEITEALL 1546
            EKS IAKI+LKRGVQLT+SERMAE+IK+LTGG +LSRNKD++V YRGK+FLSP++TEALL
Sbjct: 487  EKSLIAKIALKRGVQLTTSERMAEDIKRLTGGVMLSRNKDFLVFYRGKNFLSPDVTEALL 546

Query: 1547 ERERLAKTLQDEEEQARLRASSSVALNDMSVIEPGIAGTLGETLEAHARWGNDIDDDHAN 1726
            ERERLAK+LQDEEEQARLRAS+    N       G AGTLGETL+A A+WG  +D +   
Sbjct: 547  ERERLAKSLQDEEEQARLRASAMFIPNVEVAQHFGTAGTLGETLDADAKWGKRLDKE--- 603

Query: 1727 KMVRAAEMTRHANIVRKLERNLLIAEQKVDKAGRVLAKVEESLKPAEHVKDPEPITEEER 1906
            K++R A++ RHA++VRKLER L  AE+K+ +A + L+KVEESLKP++   DPE IT+EER
Sbjct: 604  KVMREADILRHAHLVRKLERKLSFAERKLMRAEQALSKVEESLKPSKQQADPESITDEER 663

Query: 1907 FMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIIKAKTFSQVKNVALALEA 2086
            FMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVKI++ AKTF QVKN+ALALEA
Sbjct: 664  FMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKTFEQVKNIALALEA 723

Query: 2087 ESGGVLVSVDKVSKGFAIVVYRGRDYHRPPTLRPKNLLTKRKALARSIELQRREALNRHI 2266
            ESGGVLVSVDKVSK FAI+VYRG+DYHRP TLRPKNLLTKRKALARSIELQR+EAL +HI
Sbjct: 724  ESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIELQRQEALLKHI 783

Query: 2267 SNLQKKVDQLRSELAQMDLAKDQGDEELYAKLDSAYCXXXXXXXXXXXXXAYLNTLNSD 2443
            S +Q KVD LRSE+ QMD  KDQGDE LY KLDS+Y              AYL T N +
Sbjct: 784  SAVQSKVDTLRSEIEQMDSVKDQGDEALYNKLDSSY---PTDDEDSEEVDAYLETYNRE 839


>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Vitis vinifera]
            gi|297737163|emb|CBI26364.3| unnamed protein product
            [Vitis vinifera]
          Length = 902

 Score =  870 bits (2249), Expect = 0.0
 Identities = 458/730 (62%), Positives = 549/730 (75%), Gaps = 20/730 (2%)
 Frame = +2

Query: 245  WINGWRGPSFRPFPKWPPSAVDYRHGLSSDDEEFXXXXXXXXXXXXXIVEKLKKFGYIDD 424
            WI+ W GP  +  PK     ++YR+   S+                 IVEKLKKFGY+DD
Sbjct: 83   WIDKWNGPHQKSHPKESRPVMNYRN---SETVSRSDGGSGGGSTMEKIVEKLKKFGYMDD 139

Query: 425  SEEVKESP---LPEKGSVEDIFYAEDGILPDSRGGLSFDL----------NEEIRFPWEK 565
             +E KE+    + EKGS+EDIFY E+GILP+ +GG S D           N E+RFPWE+
Sbjct: 140  VKETKENVQERIIEKGSIEDIFYIEEGILPNPQGGFSLDSPLGVENKGDGNGEVRFPWER 199

Query: 566  PSEADNVAPARKKRTKTSLAELTLPEGELRRLRHMAIRTKSRTKIKGAGVTKEIVDLIHE 745
            P   +      + +++TSLAELTLPE ELRRLR++ +RTK++TKI G GVT+ +VD+I E
Sbjct: 200  PKVEEGSV---RIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIRE 256

Query: 746  KWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSISLYRGVTYEIPQPVKIR 925
            KWKT E+V+LKCEG  ALNM+R+HEILERKTGGLVIWRSGTS+SLYRGV+YE+P  +  R
Sbjct: 257  KWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPVQLNKR 316

Query: 926  YQSPERAGLNSFKRDT-YSLAQASEFSRGN-----HMEDFHEC-VSAEVDKRKDLQLPPE 1084
                     +SF   T  S A +S  + GN       ++ H    +  +   ++     E
Sbjct: 317  VYKKNETSHSSFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQATLNITDGENKDTESE 376

Query: 1085 SHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVKRTLGLKE 1264
              Y+ EIDKLLD LGPRYTDWPG  P P+DADLLPG + GY+PPFRILPYGV+ +LGLKE
Sbjct: 377  VKYEDEIDKLLDGLGPRYTDWPGCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKE 436

Query: 1265 GTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSSERMAEEI 1444
             TALRRL+RVLPPHFALGRSR+ +GLA A++KLWE+SSIAK++LKRGVQLT+SERMAE+I
Sbjct: 437  ATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDI 496

Query: 1445 KKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLRASSSVAL 1624
            KKLTGG +LSRNKD++V YRGK+FLS ++TEALLERERLAK LQDEEEQARLRAS+ +  
Sbjct: 497  KKLTGGVLLSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTLITP 556

Query: 1625 NDMSVIEPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLERNLLIAE 1804
                  + G AGTLGETLEA ARWG  +DD    KM++ AE+ RHAN+VRKLER L +AE
Sbjct: 557  TVGITEQVGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAE 616

Query: 1805 QKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRRGVFDGTI 1984
            +K+ KA   L+KVEE LKPA    DPE IT+EERFMFRKLGLRMKAFLLLGRRGVF GT+
Sbjct: 617  RKLMKAENALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTV 676

Query: 1985 ENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIVVYRGRDY 2164
            ENMHLHWKYRELVKII+KAKTF QVK  ALALE+ESGGVLVSVDKVSKGFAIVV+RG+DY
Sbjct: 677  ENMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDY 736

Query: 2165 HRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDLAKDQGDE 2344
             RP TLRPKNLLTKRKALARSIELQRREAL  HIS LQ+ V++LRSE+ QMD+ KD GDE
Sbjct: 737  QRPSTLRPKNLLTKRKALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDE 796

Query: 2345 ELYAKLDSAY 2374
            ELY KLDSAY
Sbjct: 797  ELYDKLDSAY 806


>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score =  867 bits (2241), Expect = 0.0
 Identities = 457/730 (62%), Positives = 548/730 (75%), Gaps = 20/730 (2%)
 Frame = +2

Query: 245  WINGWRGPSFRPFPKWPPSAVDYRHGLSSDDEEFXXXXXXXXXXXXXIVEKLKKFGYIDD 424
            WI+ W GP  +  PK     ++YR+   S+                 IVEKLKKFGY+DD
Sbjct: 83   WIDKWNGPHQKSHPKEXRPVMNYRN---SETVSRSDGGSGGGSTMEKIVEKLKKFGYMDD 139

Query: 425  SEEVKESP---LPEKGSVEDIFYAEDGILPDSRGGLSFDL----------NEEIRFPWEK 565
             +E KE+    + EKGS+EDIFY E+GILP+ +GG S D           N E+RFPWE+
Sbjct: 140  VKETKENVQERIIEKGSIEDIFYIEEGILPNPQGGFSLDSPLGVENKGDGNGEVRFPWER 199

Query: 566  PSEADNVAPARKKRTKTSLAELTLPEGELRRLRHMAIRTKSRTKIKGAGVTKEIVDLIHE 745
            P   +      + +++TSLAELTLPE ELRRLR++ +RTK++TKI G GVT+ +VD+I E
Sbjct: 200  PKVEEGSV---RIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIRE 256

Query: 746  KWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSISLYRGVTYEIPQPVKIR 925
            KWKT E+V+LKCEG  ALNM+R+HEILERKTGGLVIWRSGTS+SLYRGV+YE+P  +  R
Sbjct: 257  KWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPVQLNKR 316

Query: 926  YQSPERAGLNSFKRDT-YSLAQASEFSRGN-----HMEDFHEC-VSAEVDKRKDLQLPPE 1084
                     +SF   T  S A +S  + GN       ++ H    +  +   ++     E
Sbjct: 317  VYKKNETSHSSFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQATLXITDGENKDTESE 376

Query: 1085 SHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVKRTLGLKE 1264
              Y+ EIDKLLD LGPRYTDWP   P P+DADLLPG + GY+PPFRILPYGV+ +LGLKE
Sbjct: 377  VKYEDEIDKLLDGLGPRYTDWPXCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKE 436

Query: 1265 GTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSSERMAEEI 1444
             TALRRL+RVLPPHFALGRSR+ +GLA A++KLWE+SSIAK++LKRGVQLT+SERMAE+I
Sbjct: 437  ATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDI 496

Query: 1445 KKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLRASSSVAL 1624
            KKLTGG +LSRNKD++V YRGK+FLS ++TEALLERERLAK LQDEEEQARLRAS+ +  
Sbjct: 497  KKLTGGVLLSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTLITP 556

Query: 1625 NDMSVIEPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLERNLLIAE 1804
                  + G AGTLGETLEA ARWG  +DD    KM++ AE+ RHAN+VRKLER L +AE
Sbjct: 557  TVGITEQVGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAE 616

Query: 1805 QKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRRGVFDGTI 1984
            +K+ KA   L+KVEE LKPA    DPE IT+EERFMFRKLGLRMKAFLLLGRRGVF GT+
Sbjct: 617  RKLMKAENALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTV 676

Query: 1985 ENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIVVYRGRDY 2164
            ENMHLHWKYRELVKII+KAKTF QVK  ALALE+ESGGVLVSVDKVSKGFAIVV+RG+DY
Sbjct: 677  ENMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDY 736

Query: 2165 HRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDLAKDQGDE 2344
             RP TLRPKNLLTKRKALARSIELQRREAL  HIS LQ+ V++LRSE+ QMD+ KD GDE
Sbjct: 737  QRPSTLRPKNLLTKRKALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDE 796

Query: 2345 ELYAKLDSAY 2374
            ELY KLDSAY
Sbjct: 797  ELYDKLDSAY 806


>gb|EOY05900.1| CRM family member 3A isoform 1 [Theobroma cacao]
          Length = 876

 Score =  866 bits (2237), Expect = 0.0
 Identities = 466/792 (58%), Positives = 572/792 (72%), Gaps = 31/792 (3%)
 Frame = +2

Query: 176  SLRERSDRPKAHRFPENDLQ-RPPWINGWRGPSFRPFPKWPPSAVDYRHG---LSSDDEE 343
            SL  +  + K   FP  D   R  W++ W        PK P +  +YR      S    +
Sbjct: 63   SLFHQYPKSKTKAFPTKDPTFRSNWLDSWNKTHKGFGPKPPKTVFNYRKKGDVWSLSYSQ 122

Query: 344  FXXXXXXXXXXXXXIVEKLKKFGYIDDSEEVKESP------LPEKGSVEDIFYAEDGILP 505
                          IVEKLKKFGYI +  E KE        + E+GS+EDIFY E+G+LP
Sbjct: 123  SDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEKGEEEPKRVIERGSIEDIFYVEEGMLP 182

Query: 506  DSRGGLS----------FDLNEEIRFPWEKPSEADNVAPARKKR-TKTSLAELTLPEGEL 652
            ++RGG S          F  + E+RFPWEK  E +       +R +KTSLAELTLPE EL
Sbjct: 183  NNRGGFSKESPLGMENVFGSDGEVRFPWEKRKEDEEEGGWTARRDSKTSLAELTLPESEL 242

Query: 653  RRLRHMAIRTKSRTKIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILER 832
            RRLR++  RTKS+ +IKGAGVT+E+VD IHEKWKTEE+VRLK EG PALNMKRMHEILER
Sbjct: 243  RRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVRLKIEGAPALNMKRMHEILER 302

Query: 833  KTGGLVIWRSGTSISLYRGVTYEIPQPVKIRYQSPERAGLNSFKRD---TYSLAQASEFS 1003
            KTGGLVIWRSGTS+SLYRGV+YE+P                 +KR+   TY+L   S+ +
Sbjct: 303  KTGGLVIWRSGTSVSLYRGVSYEVPSV---------HLSKRIYKRNETFTYALPSVSDKT 353

Query: 1004 R-----GNHMEDFHECVSAEV--DKRKDLQLPPESHYDKEIDKLLDDLGPRYTDWPGNGP 1162
            +     G+H +      ++E   +  KD +  PE  Y+ E+DKLL+ LGPRYTDWPG  P
Sbjct: 354  KDLSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLGPRYTDWPGCNP 413

Query: 1163 PPVDADLLPGVVPGYEPPFRILPYGVKRTLGLKEGTALRRLSRVLPPHFALGRSRRHQGL 1342
             PVDADLLPG+V GY+PPFR+LPYGV+ +LGLKE T+LRRL+RVLPPHFA+GRSR+ QGL
Sbjct: 414  LPVDADLLPGIVAGYQPPFRVLPYGVRSSLGLKEATSLRRLARVLPPHFAIGRSRQLQGL 473

Query: 1343 ASAIVKLWEKSSIAKISLKRGVQLTSSERMAEEIKKLTGGAILSRNKDYIVIYRGKDFLS 1522
            A A++KLWEKSSIAKI+LKRGVQLT+SERMAE+IKKLTGG +LSRNKD++V YRGK+FLS
Sbjct: 474  AVAMIKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGMLLSRNKDFLVFYRGKNFLS 533

Query: 1523 PEITEALLERERLAKTLQDEEEQARLRASSSVALNDMSVIEPGIAGTLGETLEAHARWGN 1702
             ++ EAL+ERERLAK+LQDEEEQARLRAS+ +  +     + G AGTLGETL+A ARWG 
Sbjct: 534  ADVAEALVERERLAKSLQDEEEQARLRASAFLVPSTEVAEQSGAAGTLGETLDADARWGK 593

Query: 1703 DIDDDHANKMVRAAEMTRHANIVRKLERNLLIAEQKVDKAGRVLAKVEESLKPAEHVKDP 1882
             +D+ H  K+++ AE+ RHAN+VRKL++NL  A++K+ KA R L KVE+ LKPA+   DP
Sbjct: 594  RLDNHHKEKVMKEAEILRHANLVRKLDKNLAFADRKLLKAERALTKVEDYLKPADRQADP 653

Query: 1883 EPITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIIKAKTFSQVK 2062
            E IT+EERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKII+KAKTF QVK
Sbjct: 654  ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIMKAKTFDQVK 713

Query: 2063 NVALALEAESGGVLVSVDKVSKGFAIVVYRGRDYHRPPTLRPKNLLTKRKALARSIELQR 2242
             VALALEAESGGVLVSVD++SKG+AI+VYRG+DY RP T+RPKNLLTKR+ALARSIELQR
Sbjct: 714  KVALALEAESGGVLVSVDRISKGYAIIVYRGKDYQRPSTIRPKNLLTKRRALARSIELQR 773

Query: 2243 REALNRHISNLQKKVDQLRSELAQMDLAKDQGDEELYAKLDSAYCXXXXXXXXXXXXXAY 2422
            REAL +H+S LQ KVD++RSE+ QM   ++QGDEE Y +LDS+Y              AY
Sbjct: 774  REALVKHVSALQAKVDKIRSEIDQMHSMEEQGDEEFYDRLDSSY-PTDDDDTEEEGDEAY 832

Query: 2423 LNTLNSDVAVDE 2458
            L T  S+   +E
Sbjct: 833  LETYESENDAEE 844


>ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Populus trichocarpa]
            gi|222864769|gb|EEF01900.1| hypothetical protein
            POPTR_0010s08770g [Populus trichocarpa]
          Length = 894

 Score =  856 bits (2211), Expect = 0.0
 Identities = 462/821 (56%), Positives = 578/821 (70%), Gaps = 31/821 (3%)
 Frame = +2

Query: 86   LDSLHASFSRLRSPRFLVVRRFSAV-----SPSLRSLRERSDRPKAHRFPENDLQR---- 238
            +DS  +SFS+         R  S+      S    S+ +++   K+  FP +  +     
Sbjct: 11   IDSFQSSFSKFHGTPLQFFRYSSSFPLRSHSGYACSITDKNPSTKSTSFPTDKSKTLNLS 70

Query: 239  --PPWINGWRGPSFRPFPKWPPSAVDYRHGLSSDDEEFXXXXXXXXXXXXXIVEKLKKFG 412
                W   W  P+ +  P+ P +  DYR   S+                  IVEKLKK G
Sbjct: 71   TGSSWFFNWNKPNKQNLPRTPQAVFDYRSNNSNSSGS--------GSTMEKIVEKLKKHG 122

Query: 413  YID----DSEEVKESPLPEKGSVEDIFYAEDGILPDSRGGLS----------FDLNEEIR 550
            Y+D    +++E  +  + EKGSVEDIFY E+G+LP++RGG S          F  + E+R
Sbjct: 123  YMDGDVNENKERMQERVIEKGSVEDIFYVEEGMLPNARGGFSKESPLGVEDVFRSDGEVR 182

Query: 551  FPWEKPS-EADNVAPARKKRTKTSLAELTLPEGELRRLRHMAIRTKSRTKIKGAGVTKEI 727
            FPWEKP  E D      + +++TSLAELTLPE ELRRLR++   TKS+T++ G GVT+E+
Sbjct: 183  FPWEKPKKEEDEGKWTARSKSRTSLAELTLPESELRRLRNLTYGTKSKTRVGGRGVTQEV 242

Query: 728  VDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSISLYRGVTYEIP 907
            VD IH+KWKT E+ R+K EG PALNMKRMHEILE KTGGLVIWRSG ++SLYRGV+YE P
Sbjct: 243  VDAIHDKWKTSEIARVKVEGAPALNMKRMHEILENKTGGLVIWRSGATVSLYRGVSYEDP 302

Query: 908  Q-PVKIRYQSPERAGLNSFKRDT-YSLAQASEFSRGN--HMEDFHECVSAEVDKRKDLQL 1075
                K R    +    NS    T  ++   S+ S  N  H       ++ E   +K+ + 
Sbjct: 303  ALKWKKRIFKKKETSSNSLPAATSITIGSQSKNSPDNEIHAPRPKTEINVEAANQKETKT 362

Query: 1076 PPESHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVKRTLG 1255
              +  Y+ E+DKLLD LGPRYTDWPG  P PVDAD+LPGV+PGY+PPFRILPYGV+ TLG
Sbjct: 363  QTDVKYEDEVDKLLDGLGPRYTDWPGLDPLPVDADMLPGVIPGYQPPFRILPYGVRPTLG 422

Query: 1256 LKEGTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSSERMA 1435
             ++ T+LRRL+RVLPPHFA+GRSR+ QGLA A++KLWEKSSI K++LKRGVQLT+SERMA
Sbjct: 423  RQDSTSLRRLARVLPPHFAVGRSRQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTSERMA 482

Query: 1436 EEIKKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLRASSS 1615
            E+IKKLTGG +LSRNKD++V YRGKDFLSPE++EALLERERLAK+LQDEEEQARLRAS+ 
Sbjct: 483  EDIKKLTGGLLLSRNKDFLVFYRGKDFLSPEVSEALLERERLAKSLQDEEEQARLRASAL 542

Query: 1616 VALNDMSVIEPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLERNLL 1795
            V  +D  + E GIAG+L ETL+A A+WG  +DD H  K++R AE+ RHA+IVR+LE+ L 
Sbjct: 543  VIPSDEIMEESGIAGSLEETLDADAKWGKRLDDCHKEKIIREAEIVRHASIVRRLEKKLA 602

Query: 1796 IAEQKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRRGVFD 1975
             A++K+ +A R L KVE  LKP+E   DPE IT+EERFMFRKLGLRMKAFLLLGRRGVFD
Sbjct: 603  FAQRKLRRAERTLNKVEGFLKPSERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFD 662

Query: 1976 GTIENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIVVYRG 2155
            GT+ENMHLHWKYRELVKII+KAK+F QVK +ALALEAESGGVLVSVDK+SKG+AI+VYRG
Sbjct: 663  GTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAESGGVLVSVDKISKGYAIIVYRG 722

Query: 2156 RDYHRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDLAKDQ 2335
            +DY RP  LRPKNLLTKRKALARSIE+QR EAL  H+S L+ KV+++RSE+ QM   KD+
Sbjct: 723  KDYQRPSMLRPKNLLTKRKALARSIEIQRSEALQNHVSALEIKVEKIRSEIEQMGFVKDK 782

Query: 2336 GDEELYAKLDSAY-CXXXXXXXXXXXXXAYLNTLNSDVAVD 2455
            GDEELY +LDSAY               AYL T NS+  VD
Sbjct: 783  GDEELYDRLDSAYLTDDDADDSEDEGDEAYLETYNSENDVD 823


>ref|XP_004495335.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cicer arietinum]
          Length = 838

 Score =  850 bits (2197), Expect = 0.0
 Identities = 464/808 (57%), Positives = 571/808 (70%), Gaps = 36/808 (4%)
 Frame = +2

Query: 59   TLQLHPCALLDSLHASFSRLRSPRFLVVRRFSAVSPSLRSLRERSDRPKAHRFPENDLQR 238
            T QLHP   +DS H S     S RF      +  +PS     +     K    P N    
Sbjct: 6    TRQLHP--FIDSFHTSSPSFNSLRFFTYNLTTYKTPSTNFTFK-----KYPILPRNTFST 58

Query: 239  PPWINGWRGPSFRPFPKWPPSAV-DYR----------HGLSSDDEEFXXXXXXXXXXXXX 385
              W+  W  PS +     PP AV +YR          H  SSDDE+              
Sbjct: 59   HTWLKHWNQPSSKHNRPKPPRAVLNYRNSGNGHSSKSHFSSSDDED-----NNGGSTMDR 113

Query: 386  IVEKLKKFGYIDDSEEVKESP-----LPEKGSVEDIFYAEDGILPDSRGGLSFDL----- 535
            IVEKLKKFGY DD ++ K+       + EKGSVEDIFY E+GILP+++GG S +      
Sbjct: 114  IVEKLKKFGYDDDDDDEKKDHNTKERVIEKGSVEDIFYVEEGILPNTKGGFSSESPFGVG 173

Query: 536  -----NEEIRFPWEKPSEADNVAP----ARKKRTKTSLAELTLPEGELRRLRHMAIRTKS 688
                   E+RFPWEK +  D+         +K++KTSLAELTLPE EL+RL  +    K 
Sbjct: 174  RFGSDGGEVRFPWEKKTVVDDEEEEDRKGLRKKSKTSLAELTLPESELKRLLKLTFEKKH 233

Query: 689  RTKIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGT 868
            +T+I G GVT+ +VD IHE+WKT E+VRLK EG  ALNMKRMHEILERKTGGLVIWRSG 
Sbjct: 234  KTRIGGGGVTQAVVDKIHERWKTSEIVRLKFEGDAALNMKRMHEILERKTGGLVIWRSGN 293

Query: 869  SISLYRGVTYEIP--QPVKIRYQSPERAGLNSFKRDTYSLAQASEFSRGNHMEDFHECVS 1042
            S+SLYRGV+Y+ P  Q  K  Y+  E +     K       + SE +  +      E + 
Sbjct: 294  SVSLYRGVSYKDPSIQHNKQLYRKSENSSKFLSKPSNNFAVKPSELTSNSETNTSLEKLE 353

Query: 1043 AEVDKRKDLQLPPESHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFR 1222
            +  D+++   LP  + Y+ E+DKLLD LGPRYTDWPG  P PVDAD+LP  VPGY+PPFR
Sbjct: 354  STNDQKEKDNLPKLT-YEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFR 412

Query: 1223 ILPYGVKRTLGLKEGTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKR 1402
            +LP+GV+ TLGLKE T+LRR++R LPPHFALGR+R+ QGLA+A++KLWEKSSIAK++LKR
Sbjct: 413  VLPFGVRPTLGLKEATSLRRIARGLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVALKR 472

Query: 1403 GVQLTSSERMAEEIKKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDE 1582
            GVQLT+SERMAEEIKKLTGG ILSRNKD++V +RGK FLS ++TEALLERER+AK +QDE
Sbjct: 473  GVQLTTSERMAEEIKKLTGGTILSRNKDFLVFFRGKSFLSSDVTEALLERERMAKAMQDE 532

Query: 1583 EEQARLRASS----SVALNDMSVIEPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEM 1750
            EEQARLRASS    ++  +++SV E   AGTLGETL+A A+WG  +D+ H  K++R  E 
Sbjct: 533  EEQARLRASSLLIPAINTSELSVAE---AGTLGETLDADAKWGKTLDERHKQKVMREVEQ 589

Query: 1751 TRHANIVRKLERNLLIAEQKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGL 1930
             RHAN+VRKLE+ L +AE+K+ +A + L KVEESLKP+E+  DPE IT+EERFMFRKLGL
Sbjct: 590  LRHANLVRKLEQKLSLAERKIMRAEKALMKVEESLKPSENTADPESITDEERFMFRKLGL 649

Query: 1931 RMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVS 2110
            RMKAFLLLGRRGVFDGT+ENMHLHWKYREL+KII+KAK F QVK +ALALEAESGGVLVS
Sbjct: 650  RMKAFLLLGRRGVFDGTVENMHLHWKYRELIKIIVKAKNFEQVKKIALALEAESGGVLVS 709

Query: 2111 VDKVSKGFAIVVYRGRDYHRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVD 2290
            VDKVSKG++I+VYRG+DY RP TLRPKNLLTKRKALARSIELQR EAL+ HIS LQ  ++
Sbjct: 710  VDKVSKGYSILVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRHEALSTHISTLQSNME 769

Query: 2291 QLRSELAQMDLAKDQGDEELYAKLDSAY 2374
            +LRSE+ QM+  K++GDE LY KLDSAY
Sbjct: 770  KLRSEIEQMEKVKEEGDEALYNKLDSAY 797


>ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
            gi|223543652|gb|EEF45180.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 773

 Score =  849 bits (2194), Expect = 0.0
 Identities = 443/686 (64%), Positives = 541/686 (78%), Gaps = 23/686 (3%)
 Frame = +2

Query: 386  IVEKLKKFGYIDDS--EEVKESPLP---EKGSVEDIFYAEDGILPDSRGGLS-------- 526
            IVEKLKK GYID +  E+ KE  L    +KGSVEDIFY E+G LP+SRGG S        
Sbjct: 4    IVEKLKKHGYIDGNVDEKKKEKTLERVIQKGSVEDIFYVEEGNLPNSRGGFSKESPLGVE 63

Query: 527  --FDLNEEIRFPWEKPS----EADNVAPARKKRTKTSLAELTLPEGELRRLRHMAIRTKS 688
              F  N E+RFPWEKP     E +    AR K ++T LAELTLPE ELRRLR++  + KS
Sbjct: 64   DVFKSNGEVRFPWEKPKREELEHEKKWTARSK-SRTQLAELTLPESELRRLRNLTYQIKS 122

Query: 689  RTKIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGT 868
            + ++KGAGVT+E+VD IH++WKT E+VR+K EG PALNM+RMHEILERKTGGLVIWRSGT
Sbjct: 123  KVRVKGAGVTQEVVDSIHDRWKTSEIVRVKVEGAPALNMRRMHEILERKTGGLVIWRSGT 182

Query: 869  SISLYRGVTYEIPQPVKIRYQSPERAGL--NSFKRDTYSLAQASEFSRGN--HMEDFHEC 1036
            S+SLYRGV+YE P  V++  Q  +R  L  NS    T  +   S+ +  +  +M   +  
Sbjct: 183  SVSLYRGVSYEDPS-VQLNKQILKRNELSNNSLSTATGIIRSPSKSAASSDLNMPHLNSD 241

Query: 1037 VSAEVDKRKDLQLPPESHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPP 1216
             +AE +++K++++  E  Y+ E+DKLL+ LGPRYTDW G  P PVDAD+LPG++PGY+PP
Sbjct: 242  STAEGEEKKEIEMETEVKYEDEVDKLLEGLGPRYTDWAGLDPLPVDADMLPGIIPGYQPP 301

Query: 1217 FRILPYGVKRTLGLKEGTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISL 1396
            FRILPYGV+ +LG KE T+LRRL+R+LPPHFALGRSR+ QGLA A++KLWEKSSIAKISL
Sbjct: 302  FRILPYGVRSSLGQKEATSLRRLARILPPHFALGRSRQLQGLADAMIKLWEKSSIAKISL 361

Query: 1397 KRGVQLTSSERMAEEIKKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQ 1576
            KRGVQLT+SERMAE+IKKLTGG +LSRNKD++V YRGKDFLSPE+TEAL+ERERLA++LQ
Sbjct: 362  KRGVQLTTSERMAEDIKKLTGGMLLSRNKDFLVFYRGKDFLSPEVTEALVERERLAQSLQ 421

Query: 1577 DEEEQARLRASSSVALNDMSVIEPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEMTR 1756
            D+EEQARLRAS+       ++ +PG AGTL ETL+A ARWG  +D +H  K++R AE+ R
Sbjct: 422  DKEEQARLRASALFVQTAETLEQPGTAGTLEETLDADARWGKCLDQNHREKIMREAEIAR 481

Query: 1757 HANIVRKLERNLLIAEQKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGLRM 1936
            HAN+VRKLE  L  AE+K+ KA R L+KVE  LKPAE   DPE IT+EERFMFRKLGLRM
Sbjct: 482  HANLVRKLESKLAFAEKKLMKAERALSKVEVFLKPAERQADPESITDEERFMFRKLGLRM 541

Query: 1937 KAFLLLGRRGVFDGTIENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVSVD 2116
            KAFLLLGRRGVFDGT+ENMHLHWKYRELVKII+KAK   QVK +ALALEAESGG+LVSVD
Sbjct: 542  KAFLLLGRRGVFDGTVENMHLHWKYRELVKIILKAKNIEQVKKIALALEAESGGILVSVD 601

Query: 2117 KVSKGFAIVVYRGRDYHRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVDQL 2296
            +VSKG+AI+V+RG+DY RP  LRP NLLTKRKALARSIE+QR EAL +HIS LQKKVD++
Sbjct: 602  RVSKGYAIIVFRGKDYQRPSKLRPGNLLTKRKALARSIEIQRSEALLKHISALQKKVDKI 661

Query: 2297 RSELAQMDLAKDQGDEELYAKLDSAY 2374
            R E+AQM+  KDQGDEELY +LD+ Y
Sbjct: 662  RYEIAQMEKVKDQGDEELYDRLDATY 687


>ref|XP_004291748.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 852

 Score =  837 bits (2163), Expect = 0.0
 Identities = 451/750 (60%), Positives = 553/750 (73%), Gaps = 31/750 (4%)
 Frame = +2

Query: 218  PENDLQRPPWINGWRGPSFRPFPKWPPSAVDYRHG----LSSDDEEFXXXXXXXXXXXXX 385
            P  +L    WI+ W     +  P+ P + +DY+      LSSD  +              
Sbjct: 72   PTKNLSSCSWIDRWNDSRKQHGPRRPRAVLDYQSNESGNLSSDGND-------GGSTMDK 124

Query: 386  IVEKLKKFGYIDDSE-----EVKESPLPEKGSVEDIFYAEDGILPDSRGGLSF------- 529
            IVEKLKKFGYI + +     EV+E  + EKGSVEDIFY E+G+LP+SRGG S        
Sbjct: 125  IVEKLKKFGYIAEDKNEGRGEVRERVI-EKGSVEDIFYVEEGMLPNSRGGFSGVSPLGTE 183

Query: 530  ----DLNEEIRFPWEKPSEADNVAPAR-KKRTKTSLAELTLPEGELRRLRHMAIRTKSRT 694
                D   E+RFPWEKP E +       ++R++TSLAELTLPE ELRRLR++  + K +T
Sbjct: 184  DVFGDGGGEVRFPWEKPREREKEEGGSIRRRSRTSLAELTLPESELRRLRNLTFQKKHKT 243

Query: 695  KIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSI 874
            KI GAGVT+ +V++IHE+WKT E+VRLK EGPPALNMKRMHEILERKTGGLV+WRSGTS+
Sbjct: 244  KIGGAGVTQAVVEMIHERWKTAEIVRLKIEGPPALNMKRMHEILERKTGGLVVWRSGTSL 303

Query: 875  SLYRGVTYEIPQPVKIRYQSPERAGLNSFKRDTYSLAQASE------FSRGNHMEDFHEC 1036
            SLYRGV+YE+P  V++  Q  +R  ++S    T +    +E      +S      +  E 
Sbjct: 304  SLYRGVSYEVPS-VQLNKQIFKRNEISSTSLPTVADKSVAEPYVCATYSNVKTPLEMSEN 362

Query: 1037 VSAEVDKRKDLQLPPESHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPP 1216
             S E +  + L   PE  Y+ E+D+LLD +GPR+ DWPG  P PVDAD+LPG+VPG++PP
Sbjct: 363  ASQETEDTEQL---PEVKYEDEVDELLDSIGPRFKDWPGCDPLPVDADMLPGIVPGFQPP 419

Query: 1217 FRILPYGVKRTLGLKEGTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISL 1396
            FRILPYGV+ TLGLKE T+LRRL+RVLPPHFALGR+R+ QGLA A+ KLWE+S IAKI+L
Sbjct: 420  FRILPYGVRSTLGLKEATSLRRLARVLPPHFALGRNRQLQGLAVAMSKLWERSLIAKIAL 479

Query: 1397 KRGVQLTSSERMAEEIKKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQ 1576
            KRGVQLT+SERMAE+IKKLTGG +LSRNKD++V YRGK+FLS E+TEAL+ERERLAK+LQ
Sbjct: 480  KRGVQLTTSERMAEDIKKLTGGVLLSRNKDFLVFYRGKNFLSAEVTEALVERERLAKSLQ 539

Query: 1577 DEEEQARLRASSSVALNDMSVIEP----GIAGTLGETLEAHARWGNDIDDDHANKMVRAA 1744
            DEEEQARLRAS+ V    M  IEP    G AGTLGETL+A A+WG  +D  H  K+ + A
Sbjct: 540  DEEEQARLRASAMV----MPSIEPAQHFGTAGTLGETLDADAKWGKRLDVHHKEKVTQEA 595

Query: 1745 EMTRHANIVRKLERNLLIAEQKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKL 1924
             + RHA +VRKLE+ L  AE+K+  A + L+KVEESLKP++   DPE IT+EERFMFRKL
Sbjct: 596  GILRHAKLVRKLEQKLAFAERKLMGAEQALSKVEESLKPSKQQADPESITDEERFMFRKL 655

Query: 1925 GLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVL 2104
            GL+MKAFLLLGRRGVFDGT+ENMHLHWKYRELVKI++ AK F QVK +ALALEAESGGVL
Sbjct: 656  GLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKNFDQVKKIALALEAESGGVL 715

Query: 2105 VSVDKVSKGFAIVVYRGRDYHRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKK 2284
            VSVDKVSK +AI+VYRG DY RP  LRPKNLLTKRKALARSIELQR+EAL +HI+ +Q +
Sbjct: 716  VSVDKVSKKYAIIVYRGNDYQRPSMLRPKNLLTKRKALARSIELQRQEALLKHIAAVQSR 775

Query: 2285 VDQLRSELAQMDLAKDQGDEELYAKLDSAY 2374
            VD+LRSE+ QMD  K  GDE LY KLDS Y
Sbjct: 776  VDRLRSEIEQMDTVKHHGDEALYNKLDSCY 805


>ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Citrus sinensis]
          Length = 933

 Score =  836 bits (2160), Expect = 0.0
 Identities = 460/840 (54%), Positives = 578/840 (68%), Gaps = 75/840 (8%)
 Frame = +2

Query: 80   ALLDSLHASFSRLRSPRFLVVR---------RFSAVSPSLRSLRERSDRPKAHRFPENDL 232
            A+ DS  +SFS+     F   R         RF   + S  S  E++   K   F  N+ 
Sbjct: 14   AIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKNPPRKTCSFSTNNF 73

Query: 233  -------------QRPPWINGWRGPSFRPFPKWPPSAVDYRHG----------LSSDDEE 343
                             W+  W  P+     K P ++V+YR             +  D  
Sbjct: 74   FSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGN 133

Query: 344  FXXXXXXXXXXXXXIVEKLKKFGYIDDSE----------EVKESPLPEKGSVEDIFYAED 493
                          IVEKLKKFGY+ D +          + KE  + EKGS+EDIFY E+
Sbjct: 134  GVGGVDDGGNTMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVI-EKGSIEDIFYVEE 192

Query: 494  GILPDSRGGLSFD----LNEEI------RFPWEKPSEADNVAPAR---KKRTKTSLAELT 634
            G+LP++RGG S +    L EE+      +FPWEK  E   VA  R   K+ ++TSLAELT
Sbjct: 193  GLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKE--EVAEGRWLVKRSSRTSLAELT 250

Query: 635  LPEGELRRLRHMAIRTKSRTKIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRM 814
            LPE ELRRLR++  +TKS+T+IKGAG+T+ +VD+IHEKWKT E+VRLK EG PALNMKRM
Sbjct: 251  LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 310

Query: 815  HEILERKTGGLVIWRSGTSISLYRGVTYEIPQ-------------PVKIRYQSPERAGLN 955
            HEILERKTGGLVIWRSGT++SLYRGV+YE+P              P     Q+ ++    
Sbjct: 311  HEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHK 370

Query: 956  SFKRDTYSLAQASEFSRGN--HMEDFHECVSAEVD-----KRKDLQLPPESHYDKEIDKL 1114
                   SL+ A++ +  +  + + ++   + +V+     + ++     E  Y+ E++KL
Sbjct: 371  QISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKL 430

Query: 1115 LDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVKRTLGLKEGTALRRLSRV 1294
            LD LGPRYTDWPG  P PVDAD+LPG+VPGY+PPFR+LPYGV+ TL  KE T L+RL+RV
Sbjct: 431  LDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARV 490

Query: 1295 LPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSSERMAEEIKKLTGGAILS 1474
            LPPHFALGRSR+ QGLA A++KLWEKSSIAKI+LKRGVQLT+SERM E+IKKLTGG +LS
Sbjct: 491  LPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLS 550

Query: 1475 RNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLRASSSVALNDMSVIEPGI 1654
            RNKD++V YRGK+FLSP++TEAL ERERLAK+LQDEEEQARLRAS+ V  +  ++ + G 
Sbjct: 551  RNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGT 610

Query: 1655 AGTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLERNLLIAEQKVDKAGRVL 1834
            AGTL ETL+A++RWG  +DD H   +VR AE+ RHA +V+KLE+ L  AE+K+ +A R L
Sbjct: 611  AGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERAL 670

Query: 1835 AKVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYR 2014
            +KVEESLKPAE   DPE IT+EERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYR
Sbjct: 671  SKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR 730

Query: 2015 ELVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIVVYRGRDYHRPPTLRPKN 2194
            ELVKII+K KTF Q K +ALALEAESGGVLVSVDK+SKG+A+VVYRG+DY RP TLRPKN
Sbjct: 731  ELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKN 790

Query: 2195 LLTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDLAKDQGDEELYAKLDSAY 2374
            LLTKRKALARSIELQR+EAL +H++ L+    +LRSE+ QM+  K  GDE+LY KLDSAY
Sbjct: 791  LLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAY 850


>ref|XP_004247646.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Solanum lycopersicum]
          Length = 883

 Score =  834 bits (2154), Expect = 0.0
 Identities = 424/675 (62%), Positives = 529/675 (78%), Gaps = 12/675 (1%)
 Frame = +2

Query: 386  IVEKLKKFGYIDDS--EEVKESPLPEKGSVEDIFYAEDGILPDSRGGLSFDL-------- 535
            IVEKLKKFGY D++  +E +E  + EKGS+EDIF+ E+GILP+ RGG S +         
Sbjct: 157  IVEKLKKFGYADEATEKEKREKRVVEKGSIEDIFFVEEGILPNVRGGFSEETPFGDENII 216

Query: 536  --NEEIRFPWEKPSEADNVAPARKKRTKTSLAELTLPEGELRRLRHMAIRTKSRTKIKGA 709
              +  + FPWEKP      + +   R++T LAELTLP  ELRRL ++A+R K++++I GA
Sbjct: 217  AKDGVVGFPWEKPLVKKEESNSMASRSRTHLAELTLPASELRRLTNLALRIKNKSRITGA 276

Query: 710  GVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSISLYRG 889
            GVT+++V+ I EKWKT EVVRLK EG PALNMKRMHEILERKTGGLVIWRSGTS++LYRG
Sbjct: 277  GVTQQVVETIREKWKTSEVVRLKVEGAPALNMKRMHEILERKTGGLVIWRSGTSVALYRG 336

Query: 890  VTYEIPQPVKIRYQSPERAGLNSFKRDTYSLAQASEFSRGNHMEDFHECVSAEVDKRKDL 1069
            V+YE P   +++ +   R  +   K       ++++ SR N ++   E      ++ K +
Sbjct: 337  VSYETPSE-RMKKRIMRRDEIRQ-KNSPIVDGESNQNSR-NDVDSLREDSVDTSEENKSI 393

Query: 1070 QLPPESHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVKRT 1249
                E +Y+ E+DKLLD LGPRYTDWPG+GP PVDADLLPG+VPGY+PPFRILPYGV+ T
Sbjct: 394  DRQSEVNYEDEVDKLLDGLGPRYTDWPGSGPLPVDADLLPGIVPGYQPPFRILPYGVRST 453

Query: 1250 LGLKEGTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSSER 1429
            L  +E TALRRL+RVLPPHFALGRSR+HQGLAS +VKLW++SSIAKI++KRGVQLT+SER
Sbjct: 454  LAAREATALRRLARVLPPHFALGRSRQHQGLASVMVKLWQRSSIAKIAIKRGVQLTTSER 513

Query: 1430 MAEEIKKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLRAS 1609
            MAE+IKKLTGG +LSRNKD++V YRGKDFLSPE+ EALLE+ERLAKTLQDEEE+ARLRAS
Sbjct: 514  MAEDIKKLTGGMLLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEKARLRAS 573

Query: 1610 SSVALNDMSVIEPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLERN 1789
             ++     ++     AGTLGETL+A ARWG  +DD H   ++R AE+ RH ++VRKLE+ 
Sbjct: 574  LNLTAGVTTINSSRTAGTLGETLDADARWGKRLDDKHKENVMREAELLRHGDLVRKLEKK 633

Query: 1790 LLIAEQKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRRGV 1969
            L  AE+K+ KA RVL+KVEE+L P +   +P+ +T+EERFMFRKLGLRMKAFLLLGRRG+
Sbjct: 634  LAFAEKKLMKAERVLSKVEETLNPLDRHAEPDSLTDEERFMFRKLGLRMKAFLLLGRRGI 693

Query: 1970 FDGTIENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIVVY 2149
            FDGT+ENMHLHWKYRELVKI++KAK F QV  +ALALEAESGG+LVSVDKVSKG+AI+V+
Sbjct: 694  FDGTVENMHLHWKYRELVKIMVKAKNFEQVSKIALALEAESGGILVSVDKVSKGYAIIVF 753

Query: 2150 RGRDYHRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDLAK 2329
            RG+DY RPPTLRPKNLLTKRKALARSIELQRREAL  HIS +Q +V QL +E+ Q+   K
Sbjct: 754  RGKDYSRPPTLRPKNLLTKRKALARSIELQRREALLEHISAVQTRVGQLTAEIEQLASLK 813

Query: 2330 DQGDEELYAKLDSAY 2374
            D  D+ELY KL+SAY
Sbjct: 814  DSADDELYDKLNSAY 828


>ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Glycine max]
          Length = 835

 Score =  832 bits (2149), Expect = 0.0
 Identities = 449/758 (59%), Positives = 546/758 (72%), Gaps = 25/758 (3%)
 Frame = +2

Query: 245  WINGWRGPSFRPFPKWPPSAV-DY-------RHGLSSDDEEFXXXXXXXXXXXXXIVEKL 400
            W+  W  P+       PP AV DY       + GL+S DEE              IVEKL
Sbjct: 64   WLKRWNDPTNNHARPKPPCAVLDYSENGHASKSGLASSDEE-GGDGNTGGSTMDRIVEKL 122

Query: 401  KKFGYIDDSEEVKESPLPEKGSVEDIFYAEDGILPDSRGGLSFDL----------NEEIR 550
            KKFGY++D  + KE  + EKGSVEDIFY E+G+LP+SRGG S +           + E+R
Sbjct: 123  KKFGYVEDGIQNKERVI-EKGSVEDIFYVEEGMLPNSRGGFSSESPLGFGSFGSDDREVR 181

Query: 551  FPWEKPS-EADNVAPARKKRTKTSLAELTLPEGELRRLRHMAIRTKSRTKIKGAGVTKEI 727
            FPWEKP  E      + + R+KTSLAELTLPE EL+RL  +    K +T+I  +GVT+ +
Sbjct: 182  FPWEKPVVEELEERKSMRSRSKTSLAELTLPESELKRLLKLTFEKKHKTRIGRSGVTQAV 241

Query: 728  VDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSISLYRGVTYEIP 907
            VD IHE+WKT E+VRLK EG  ALNMKRMHEILERKTGGLVIWRSG S+SLYRGV+YE+P
Sbjct: 242  VDKIHERWKTSEIVRLKFEGEAALNMKRMHEILERKTGGLVIWRSGNSVSLYRGVSYEVP 301

Query: 908  --QPVKIRYQSPERAGLNSFKRDTYSLAQASEF-SRGNHMEDFHECVSAEVDKRKDLQLP 1078
              Q  K  Y+  E +          S+   S+  S         +  S   +K +D    
Sbjct: 302  SVQQNKKIYRKSENSSKLLPTPSYNSVGNPSDIASNSGTSAPLAKLESTNDEKERDYL-- 359

Query: 1079 PESHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVKRTLGL 1258
            P+ +Y+ E+DKLLD LGPRYTDWPG  P PVDAD+LP  VPGY+PPFR+LP+GV+ TLGL
Sbjct: 360  PKVNYEHEVDKLLDGLGPRYTDWPGCDPLPVDADMLPVTVPGYQPPFRVLPFGVRATLGL 419

Query: 1259 KEGTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSSERMAE 1438
            +E TALRR++R LPPHFALGR+R+ QGLA A++KLWE SSIAK++LKRGVQLT+SERMAE
Sbjct: 420  REATALRRIARTLPPHFALGRNRQLQGLAVAMIKLWEISSIAKVALKRGVQLTTSERMAE 479

Query: 1439 EIKKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLRASSSV 1618
            EIKKLTGG +LSRNKD++V +RGK+FLS ++T+ALLERER+AK +QDEEEQARLRASS +
Sbjct: 480  EIKKLTGGILLSRNKDFLVFFRGKNFLSADVTQALLERERMAKVMQDEEEQARLRASSLL 539

Query: 1619 ALNDMSVIEPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLERNLLI 1798
               + +      AGTLGETL+A A+WG  +D+ H  K++R  E  RHAN+V+KLE+ L  
Sbjct: 540  IPTNNTSELSAEAGTLGETLDADAKWGKTLDERHKQKIMREVEQLRHANLVKKLEQKLSF 599

Query: 1799 AEQKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRRGVFDG 1978
            AE+K+ +A + L KVE  LKP+E+  DPE IT+EERFMFRKLGLRMKAFLLLGRRGVFDG
Sbjct: 600  AERKLRRAEKALMKVESFLKPSEYKADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDG 659

Query: 1979 TIENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIVVYRGR 2158
            TIENMHLHWKYRELVKII+KAKTF QVK +ALALEAESGGVLVSVDKVSKG++++VYRG+
Sbjct: 660  TIENMHLHWKYRELVKIIVKAKTFEQVKKIALALEAESGGVLVSVDKVSKGYSVIVYRGK 719

Query: 2159 DYHRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDLAKDQG 2338
            DY RP TLRPKNLLTKRKALARSIELQR EAL  HIS LQ KV ++RSE+ QM+  KD+G
Sbjct: 720  DYQRPSTLRPKNLLTKRKALARSIELQRHEALMNHISTLQSKVGRIRSEIEQMEKVKDKG 779

Query: 2339 DEELYAKLDSAY---CXXXXXXXXXXXXXAYLNTLNSD 2443
            DE LY KLDSAY                 AYL T NS+
Sbjct: 780  DEALYDKLDSAYPSDDENSEVEDGEQGDEAYLKTYNSE 817


>ref|XP_006352117.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Solanum tuberosum]
          Length = 883

 Score =  831 bits (2147), Expect = 0.0
 Identities = 434/728 (59%), Positives = 537/728 (73%), Gaps = 18/728 (2%)
 Frame = +2

Query: 245  WINGWRGPSFRPFPKWPPSAVDYRHGLSSDDEEFXXXXXXXXXXXXXIVEKLKKFGYIDD 424
            W+  W G       K     ++YR+  + D                 IVEKLKKFGY D+
Sbjct: 111  WLGKWNGTRNDIKLKKAQIVLNYRNS-NGDTSGSDCEESISGSTMDRIVEKLKKFGYADE 169

Query: 425  S--EEVKESPLPEKGSVEDIFYAEDGILPDSRGGLSFD--LNEE--------IRFPWEKP 568
            +  +E KE  + EKGS+EDIF+ E+GILP+ RGG S +    +E        +RFPWE+P
Sbjct: 170  ATEKEKKEKRVVEKGSIEDIFFVEEGILPNVRGGFSEESPFGDENVIAKDGVVRFPWERP 229

Query: 569  SEADNVAPARKKRTKTSLAELTLPEGELRRLRHMAIRTKSRTKIKGAGVTKEIVDLIHEK 748
                  + +   R++T LAELTLP  ELRRL ++A+R K++++I GAGVT+++V+ I EK
Sbjct: 230  LVKKEESNSMASRSRTHLAELTLPASELRRLTNLALRIKNKSRITGAGVTQQVVETIREK 289

Query: 749  WKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSISLYRGVTYEIPQPVKIRY 928
            WKT EVVRLK EG PALNMKRMHEILERKTGGLVIWRSGTS++LYRGV+YE P       
Sbjct: 290  WKTSEVVRLKVEGAPALNMKRMHEILERKTGGLVIWRSGTSVALYRGVSYETPS------ 343

Query: 929  QSPERAGLNSFKRDTYSLAQA------SEFSRGNHMEDFHECVSAEVDKRKDLQLPPESH 1090
               ER      +RD      +      S  +  N ++   E      ++ K++    E +
Sbjct: 344  ---ERMKKRIMRRDEIRHKNSPIVDGESNQNPRNDVDSLREDSVDTSEENKNIDRQSEVN 400

Query: 1091 YDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVKRTLGLKEGT 1270
            Y+ E+DKLLD LGPRYTDWPG+GP PVDADLLPG+VPGY+PPFRILPYGV+ TL  +E T
Sbjct: 401  YEDEVDKLLDGLGPRYTDWPGSGPLPVDADLLPGIVPGYQPPFRILPYGVRSTLAAREAT 460

Query: 1271 ALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSSERMAEEIKK 1450
            ALRRL+RVLPPHFALGRSR+HQGLAS +VKLW++SSIAKI++KRGVQLT+SERMAE+IKK
Sbjct: 461  ALRRLARVLPPHFALGRSRQHQGLASVMVKLWQRSSIAKIAIKRGVQLTTSERMAEDIKK 520

Query: 1451 LTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLRASSSVALND 1630
            LTGG +LSRNKD++V YRGKDFLSPE+ EALLE+ERLAKTLQDEEE+ARLRAS  +    
Sbjct: 521  LTGGMLLSRNKDFLVFYRGKDFLSPEVAEALLEKERLAKTLQDEEEKARLRASLLLTAGV 580

Query: 1631 MSVIEPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLERNLLIAEQK 1810
             ++     AGTLGETL+A ARWG  +DD     ++R AE+ RH ++VRKLE+ L  AE+K
Sbjct: 581  TTINSSRTAGTLGETLDADARWGKRLDDKDKENVMREAELLRHGDLVRKLEKKLAFAERK 640

Query: 1811 VDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIEN 1990
            + KA RVL+KVEE+L P +   +P+ +T+EERFMFRKLGLRMKAFLLLGRRG+FDGT+EN
Sbjct: 641  LMKAERVLSKVEETLNPLDRRAEPDSLTDEERFMFRKLGLRMKAFLLLGRRGIFDGTVEN 700

Query: 1991 MHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIVVYRGRDYHR 2170
            MHLHWKYRELVKI++KAK F QV  +ALALEAESGGVLVSVDKVSKG+AI+V+RG+DY R
Sbjct: 701  MHLHWKYRELVKIMVKAKNFEQVSKIALALEAESGGVLVSVDKVSKGYAIIVFRGKDYSR 760

Query: 2171 PPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDLAKDQGDEEL 2350
            PPTLRPKNLLTKRKALARSIELQRREAL  HIS +Q +V QL +E+ Q+   KD  D+EL
Sbjct: 761  PPTLRPKNLLTKRKALARSIELQRREALLEHISAVQTRVGQLTAEIEQLASLKDSTDDEL 820

Query: 2351 YAKLDSAY 2374
            Y KL+SAY
Sbjct: 821  YDKLNSAY 828


>ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
            gi|557521988|gb|ESR33355.1| hypothetical protein
            CICLE_v10004262mg [Citrus clementina]
          Length = 934

 Score =  831 bits (2147), Expect = 0.0
 Identities = 456/839 (54%), Positives = 575/839 (68%), Gaps = 74/839 (8%)
 Frame = +2

Query: 80   ALLDSLHASFSRLRSPRFLVVR---------RFSAVSPSLRSLRERSDRPKAHRFPENDL 232
            A+ DS  +SFS+     F   R          F   + S  S  E++   K   F  N+ 
Sbjct: 14   AIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNHFFYQNFSSNSAHEKNTPRKICSFSTNNF 73

Query: 233  -------------QRPPWINGWRGPSFRPFPKWPPSAVDYRHG----------LSSDDEE 343
                             W+  W  P+     K P ++V+YR             +  D  
Sbjct: 74   FSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGN 133

Query: 344  FXXXXXXXXXXXXXIVEKLKKFGYIDDSE----------EVKESPLPEKGSVEDIFYAED 493
                          IVEKLKKFGY+ D +          + KE  + EKGS+EDIFY E+
Sbjct: 134  GVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVI-EKGSIEDIFYVEE 192

Query: 494  GILPDSRGGLSFD----LNEEI------RFPWEKPSE--ADNVAPARKKRTKTSLAELTL 637
            G+LP++RGG S +    L EE+      +FPWEK  E  A+     +++ ++TSLAELTL
Sbjct: 193  GLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTL 252

Query: 638  PEGELRRLRHMAIRTKSRTKIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMH 817
            PE ELRRLR++  +TKS+T+IKGAG+T+ +VD+IHEKWKT E+VRLK EG PALNMKRMH
Sbjct: 253  PESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMH 312

Query: 818  EILERKTGGLVIWRSGTSISLYRGVTYEIPQ-------------PVKIRYQSPERAGLNS 958
            EILERKTGGLVIWRSGT++SLYRGV+YE+P              P     Q+ ++     
Sbjct: 313  EILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQ 372

Query: 959  FKRDTYSLAQASEFSRGN--HMEDFHECVSAEVD-----KRKDLQLPPESHYDKEIDKLL 1117
                  SL+ A++ +  +  + + ++     +V+     + ++     E  Y+ E++KLL
Sbjct: 373  ISMSGNSLSAAADKTAQDPSNFDSYNNVHVTQVNLETASEEQETDFVREVKYEDEVEKLL 432

Query: 1118 DDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVKRTLGLKEGTALRRLSRVL 1297
            D LGPRYTDWPG  P PVDAD+LPG+VPGY+PPFR+LPYGV+ TL  KE T L+RL+RVL
Sbjct: 433  DGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVL 492

Query: 1298 PPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSSERMAEEIKKLTGGAILSR 1477
            PPHFALGRSR+ QGLA A++KLWEKSSIAKI+LKRGVQLT+SERM E+IKKLTGG +LSR
Sbjct: 493  PPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR 552

Query: 1478 NKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLRASSSVALNDMSVIEPGIA 1657
            NKD++V YRGK+FLSP++TEAL ERERLAK+LQDEEEQARLRAS+ V  +  ++ + G A
Sbjct: 553  NKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTA 612

Query: 1658 GTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLERNLLIAEQKVDKAGRVLA 1837
            GTL ETL+A++RWG  +DD H   +VR AE+ RHA +V+KLE+ L  AE+K+ +A R L+
Sbjct: 613  GTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALS 672

Query: 1838 KVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRE 2017
            KVEESLKPAE   DPE IT EERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRE
Sbjct: 673  KVEESLKPAERQADPESITNEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 732

Query: 2018 LVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIVVYRGRDYHRPPTLRPKNL 2197
            LVKII+K KTF Q K +ALALEAESGGVLVSVDK+SKG+A+VVYRG+DY RP TLRPKNL
Sbjct: 733  LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL 792

Query: 2198 LTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDLAKDQGDEELYAKLDSAY 2374
            LTKRKALARSIELQR+EAL +H++ L+    +LRSE+ QM+  K  GDE+LY KLDSAY
Sbjct: 793  LTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAY 851


>ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
            gi|557521987|gb|ESR33354.1| hypothetical protein
            CICLE_v10004262mg [Citrus clementina]
          Length = 860

 Score =  831 bits (2147), Expect = 0.0
 Identities = 456/839 (54%), Positives = 575/839 (68%), Gaps = 74/839 (8%)
 Frame = +2

Query: 80   ALLDSLHASFSRLRSPRFLVVR---------RFSAVSPSLRSLRERSDRPKAHRFPENDL 232
            A+ DS  +SFS+     F   R          F   + S  S  E++   K   F  N+ 
Sbjct: 14   AIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNHFFYQNFSSNSAHEKNTPRKICSFSTNNF 73

Query: 233  -------------QRPPWINGWRGPSFRPFPKWPPSAVDYRHG----------LSSDDEE 343
                             W+  W  P+     K P ++V+YR             +  D  
Sbjct: 74   FSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGN 133

Query: 344  FXXXXXXXXXXXXXIVEKLKKFGYIDDSE----------EVKESPLPEKGSVEDIFYAED 493
                          IVEKLKKFGY+ D +          + KE  + EKGS+EDIFY E+
Sbjct: 134  GVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVI-EKGSIEDIFYVEE 192

Query: 494  GILPDSRGGLSFD----LNEEI------RFPWEKPSE--ADNVAPARKKRTKTSLAELTL 637
            G+LP++RGG S +    L EE+      +FPWEK  E  A+     +++ ++TSLAELTL
Sbjct: 193  GLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTL 252

Query: 638  PEGELRRLRHMAIRTKSRTKIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMH 817
            PE ELRRLR++  +TKS+T+IKGAG+T+ +VD+IHEKWKT E+VRLK EG PALNMKRMH
Sbjct: 253  PESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMH 312

Query: 818  EILERKTGGLVIWRSGTSISLYRGVTYEIPQ-------------PVKIRYQSPERAGLNS 958
            EILERKTGGLVIWRSGT++SLYRGV+YE+P              P     Q+ ++     
Sbjct: 313  EILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQ 372

Query: 959  FKRDTYSLAQASEFSRGN--HMEDFHECVSAEVD-----KRKDLQLPPESHYDKEIDKLL 1117
                  SL+ A++ +  +  + + ++     +V+     + ++     E  Y+ E++KLL
Sbjct: 373  ISMSGNSLSAAADKTAQDPSNFDSYNNVHVTQVNLETASEEQETDFVREVKYEDEVEKLL 432

Query: 1118 DDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVKRTLGLKEGTALRRLSRVL 1297
            D LGPRYTDWPG  P PVDAD+LPG+VPGY+PPFR+LPYGV+ TL  KE T L+RL+RVL
Sbjct: 433  DGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVL 492

Query: 1298 PPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSSERMAEEIKKLTGGAILSR 1477
            PPHFALGRSR+ QGLA A++KLWEKSSIAKI+LKRGVQLT+SERM E+IKKLTGG +LSR
Sbjct: 493  PPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSR 552

Query: 1478 NKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLRASSSVALNDMSVIEPGIA 1657
            NKD++V YRGK+FLSP++TEAL ERERLAK+LQDEEEQARLRAS+ V  +  ++ + G A
Sbjct: 553  NKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTA 612

Query: 1658 GTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLERNLLIAEQKVDKAGRVLA 1837
            GTL ETL+A++RWG  +DD H   +VR AE+ RHA +V+KLE+ L  AE+K+ +A R L+
Sbjct: 613  GTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALS 672

Query: 1838 KVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRE 2017
            KVEESLKPAE   DPE IT EERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRE
Sbjct: 673  KVEESLKPAERQADPESITNEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 732

Query: 2018 LVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIVVYRGRDYHRPPTLRPKNL 2197
            LVKII+K KTF Q K +ALALEAESGGVLVSVDK+SKG+A+VVYRG+DY RP TLRPKNL
Sbjct: 733  LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNL 792

Query: 2198 LTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDLAKDQGDEELYAKLDSAY 2374
            LTKRKALARSIELQR+EAL +H++ L+    +LRSE+ QM+  K  GDE+LY KLDSAY
Sbjct: 793  LTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAY 851


>gb|EOY05902.1| CRM family member 3A isoform 3 [Theobroma cacao]
          Length = 856

 Score =  830 bits (2145), Expect = 0.0
 Identities = 455/792 (57%), Positives = 557/792 (70%), Gaps = 31/792 (3%)
 Frame = +2

Query: 176  SLRERSDRPKAHRFPENDLQ-RPPWINGWRGPSFRPFPKWPPSAVDYRHG---LSSDDEE 343
            SL  +  + K   FP  D   R  W++ W        PK P +  +YR      S    +
Sbjct: 63   SLFHQYPKSKTKAFPTKDPTFRSNWLDSWNKTHKGFGPKPPKTVFNYRKKGDVWSLSYSQ 122

Query: 344  FXXXXXXXXXXXXXIVEKLKKFGYIDDSEEVKESP------LPEKGSVEDIFYAEDGILP 505
                          IVEKLKKFGYI +  E KE        + E+GS+EDIFY E+G+LP
Sbjct: 123  SDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEKGEEEPKRVIERGSIEDIFYVEEGMLP 182

Query: 506  DSRGGLS----------FDLNEEIRFPWEKPSEADNVAPARKKR-TKTSLAELTLPEGEL 652
            ++RGG S          F  + E+RFPWEK  E +       +R +KTSLAELTLPE EL
Sbjct: 183  NNRGGFSKESPLGMENVFGSDGEVRFPWEKRKEDEEEGGWTARRDSKTSLAELTLPESEL 242

Query: 653  RRLRHMAIRTKSRTKIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILER 832
            RRLR++  RTKS+ +IKGAGVT+E+VD IHEKWKTEE+VRLK EG PALNMKRMHEILER
Sbjct: 243  RRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVRLKIEGAPALNMKRMHEILER 302

Query: 833  KTGGLVIWRSGTSISLYRGVTYEIPQPVKIRYQSPERAGLNSFKRD---TYSLAQASEFS 1003
            KTGGLVIWRSGTS+SLYRGV+YE+P                 +KR+   TY+L   S+ +
Sbjct: 303  KTGGLVIWRSGTSVSLYRGVSYEVPSV---------HLSKRIYKRNETFTYALPSVSDKT 353

Query: 1004 R-----GNHMEDFHECVSAEV--DKRKDLQLPPESHYDKEIDKLLDDLGPRYTDWPGNGP 1162
            +     G+H +      ++E   +  KD +  PE  Y+ E+DKLL+ LGPRYTDWPG  P
Sbjct: 354  KDLSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLGPRYTDWPGCNP 413

Query: 1163 PPVDADLLPGVVPGYEPPFRILPYGVKRTLGLKEGTALRRLSRVLPPHFALGRSRRHQGL 1342
             PVDADLLPG+V GY+PPFR+LPYGV+ +LGLKE T+LRRL+RVLPPHFA+GRSR+ QGL
Sbjct: 414  LPVDADLLPGIVAGYQPPFRVLPYGVRSSLGLKEATSLRRLARVLPPHFAIGRSRQLQGL 473

Query: 1343 ASAIVKLWEKSSIAKISLKRGVQLTSSERMAEEIKKLTGGAILSRNKDYIVIYRGKDFLS 1522
            A A++KLWEKSSIAKI+LKRGVQLT+SERMAE+IKKLTGG +LSRNKD++V YRGK+FLS
Sbjct: 474  AVAMIKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGMLLSRNKDFLVFYRGKNFLS 533

Query: 1523 PEITEALLERERLAKTLQDEEEQARLRASSSVALNDMSVIEPGIAGTLGETLEAHARWGN 1702
             ++ EAL+ERERLAK+LQDEEEQARLRAS+ +  +     + G AGTLGETL+A ARWG 
Sbjct: 534  ADVAEALVERERLAKSLQDEEEQARLRASAFLVPSTEVAEQSGAAGTLGETLDADARWGK 593

Query: 1703 DIDDDHANKMVRAAEMTRHANIVRKLERNLLIAEQKVDKAGRVLAKVEESLKPAEHVKDP 1882
             +D+ H  K+++ AE+ RHAN+VRKL++NL  A++K+ KA R L KVE+ LKPA+   DP
Sbjct: 594  RLDNHHKEKVMKEAEILRHANLVRKLDKNLAFADRKLLKAERALTKVEDYLKPADRQADP 653

Query: 1883 EPITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIIKAKTFSQVK 2062
            E IT+EERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKII+KAKTF QVK
Sbjct: 654  ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIMKAKTFDQVK 713

Query: 2063 NVALALEAESGGVLVSVDKVSKGFAIVVYRGRDYHRPPTLRPKNLLTKRKALARSIELQR 2242
             VALALEAESGGVLVSVD++SKG+AI+VYRG+DY RP T+RPKNLLTKR+ALARSIELQR
Sbjct: 714  KVALALEAESGGVLVSVDRISKGYAIIVYRGKDYQRPSTIRPKNLLTKRRALARSIELQR 773

Query: 2243 REALNRHISNLQKKVDQLRSELAQMDLAKDQGDEELYAKLDSAYCXXXXXXXXXXXXXAY 2422
            RE             DQ+ S        ++QGDEE Y +LDS+Y              AY
Sbjct: 774  RE-------------DQMHS-------MEEQGDEEFYDRLDSSY-PTDDDDTEEEGDEAY 812

Query: 2423 LNTLNSDVAVDE 2458
            L T  S+   +E
Sbjct: 813  LETYESENDAEE 824


>ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
            truncatula] gi|355479830|gb|AES61033.1| Chloroplastic
            group IIA intron splicing facilitator CRS1 [Medicago
            truncatula]
          Length = 838

 Score =  829 bits (2141), Expect = 0.0
 Identities = 460/806 (57%), Positives = 574/806 (71%), Gaps = 32/806 (3%)
 Frame = +2

Query: 53   MATLQLHPCALLDSLHAS---FSRLRSPRFLVVRRFSAVSPSLRSLRERSDRPKAHRFPE 223
            + T QLHP     + H S   F+ + S    + + F   +P+       S  P  H    
Sbjct: 4    LPTRQLHPFHTSPNFHHSIRFFTTISSSS--IQKSFIFKTPTKNFTYLSSKNPIFHL--- 58

Query: 224  NDLQRPPWINGWRGPSFRPFPKWPPSAVDYR-----HGL-----SSDDEEFXXXXXXXXX 373
                   W+  W   +    PK P   ++Y+     H       SSDDE+F         
Sbjct: 59   KSFCTDTWLKRWNEQNR---PKPPRGVLNYQGSGNGHSSKSDFDSSDDEDFGGSRMDR-- 113

Query: 374  XXXXIVEKLKKFGY-IDDSEEVKESPLPEKGSVEDIFYAEDGILPDSRGGLS----FDLN 538
                IVEKLKKFGY  D++E +KE  + EKGS+EDIFY E+G+LP++RGG S    F + 
Sbjct: 114  ----IVEKLKKFGYESDENENIKEEGVIEKGSMEDIFYVEEGMLPNTRGGFSPESPFGIG 169

Query: 539  E-------EIRFPWEKPSEADNVAP--ARKKRTKTSLAELTLPEGELRRLRHMAIRTKSR 691
                    E+RFPWEKP   + V    + +K++KTS+AELTLPE ELRRL  +    K +
Sbjct: 170  SYGSGDGGEVRFPWEKPVVDEEVEERTSSRKKSKTSMAELTLPESELRRLLKLTFMKKHK 229

Query: 692  TKIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTS 871
            T+I G GVT+  VD IHE+WKT E+VRLK EG  ALNMKRMHEILE+KTGGLVIWRSG S
Sbjct: 230  TRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKTGGLVIWRSGNS 289

Query: 872  ISLYRGVTYEIP--QPVKIRYQSPERA-GLNSFKRDTYSLAQASEFSRGNHMEDFHECVS 1042
            +SLYRGV+Y+ P  Q  K  Y+  E++    S   D + + + SEF+  +  +   E + 
Sbjct: 290  VSLYRGVSYKDPSIQQNKQLYRKNEKSLKFLSAPSDDFEV-EPSEFTTDSETKTSLEKLE 348

Query: 1043 AEVDKRKDLQLPPESHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFR 1222
            +  D+++ + LP  S Y+ E+DKLLD LGPRYTDWPG  P PVDAD+LP  VPGY+PPFR
Sbjct: 349  STNDQKEKVNLPKIS-YEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPPTVPGYQPPFR 407

Query: 1223 ILPYGVKRTLGLKEGTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKR 1402
            +LP+GV+ TLG KE T+LRR++R LPPHFALGR+R+ QGLA+A++KLWEKSSIAK++LKR
Sbjct: 408  VLPFGVRPTLGFKEATSLRRIARGLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVALKR 467

Query: 1403 GVQLTSSERMAEEIKKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDE 1582
            GVQLT+SERMAEEIKKLTGG ILSRNKD++V YRGK+FLSP++T+ALLERE++AK++QDE
Sbjct: 468  GVQLTTSERMAEEIKKLTGGIILSRNKDFLVFYRGKNFLSPDVTQALLEREKMAKSMQDE 527

Query: 1583 EEQARLRASSSV--ALNDMSVIEPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEMTR 1756
            EEQARLRASS +  A+N   +     AGTLGETL+A A+WG  +D+ H  K++R  E  R
Sbjct: 528  EEQARLRASSLILPAINTSELSAE--AGTLGETLDADAKWGKTLDECHEQKVMREVEQLR 585

Query: 1757 HANIVRKLERNLLIAEQKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGLRM 1936
            HANIVRKLE  L +AE+K+ +A R L KVE SLKP+E   DPE IT+EERFMFRKLGLRM
Sbjct: 586  HANIVRKLEEKLSLAERKIRRAERALMKVEVSLKPSETRADPESITDEERFMFRKLGLRM 645

Query: 1937 KAFLLLGRRGVFDGTIENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVSVD 2116
            KAFLLLGRRGVFDGTIENMHLHWKYRELVKII+KA  F  VK +ALALEAESGGVLVSVD
Sbjct: 646  KAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVD 705

Query: 2117 KVSKGFAIVVYRGRDYHRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVDQL 2296
            KVSKG++I+VYRG+DY RP  LRPKNLLTKRKALARSIELQR EAL+ HIS LQ KV++L
Sbjct: 706  KVSKGYSILVYRGKDYQRPSMLRPKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKL 765

Query: 2297 RSELAQMDLAKDQGDEELYAKLDSAY 2374
            RSE+ Q++  K++GDE LY +LDSAY
Sbjct: 766  RSEIEQIEKVKEEGDEALYNRLDSAY 791


>ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cucumis sativus]
            gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Cucumis sativus]
          Length = 874

 Score =  825 bits (2130), Expect = 0.0
 Identities = 447/766 (58%), Positives = 542/766 (70%), Gaps = 38/766 (4%)
 Frame = +2

Query: 191  SDRPKAHRFP-ENDLQRPPWINGWRGPSFRPFPKWPPSAVDYRHGLSSDDEEFXXXXXXX 367
            S R   +R+    +L R  WI+ W   + R  PK P + +DY    SSD+ E        
Sbjct: 64   SSRTPVYRYNLRRNLSRVSWIDRWNETAKRNRPKPPRAVLDYP---SSDENEVSISSTGF 120

Query: 368  XXXXXX----------------IVEKLKKFGYIDDSEEVK-ESPLPEKGSVEDIFYAEDG 496
                                  IV KLKKFGYIDD  + K E    EKGSVEDI Y E+G
Sbjct: 121  SKSYRASSRIDDDGRGGSTMEKIVRKLKKFGYIDDENKEKGEERAIEKGSVEDILYIEEG 180

Query: 497  ILPDSRGGLS----------FDLNEEIRFPWEKPSEADNVAPARKKRTKTSLAELTLPEG 646
            +LP++RGG S          F  + E+RFPWEKP E ++      +R   SLA+LTLPE 
Sbjct: 181  MLPNTRGGFSKESPMGDENMFGSDGEVRFPWEKPKEKEDTHGDSTRRGSASLAQLTLPEP 240

Query: 647  ELRRLRHMAIRTKSRTKIKGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEIL 826
            ELRRLR++  + + + KI G GVT+ +VD+IHEKWK+ E+VRLK  GPPALNMKRMHEIL
Sbjct: 241  ELRRLRNLTFQKRHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPALNMKRMHEIL 300

Query: 827  ERKTGGLVIWRSGTSISLYRGVTYEIPQPVKIRYQSPERAGLNSFKRDTYSLAQASEFSR 1006
            ERKTGGLVIWRSGTS+SLYRGV+YE+P+  +   +  +R  + +  +   S    SE S 
Sbjct: 301  ERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRNEITALPKTGASTIAPSESSS 360

Query: 1007 GNHMEDFHECVSAEVDKRKDLQLPPES----------HYDKEIDKLLDDLGPRYTDWPGN 1156
                   H  V A   KR +  +  E           +Y+ E++KLLD LGPRYTDWPG 
Sbjct: 361  -------HRNVYALQQKRAETSIEGEHCSEQLTKVQVNYEDEVNKLLDGLGPRYTDWPGL 413

Query: 1157 GPPPVDADLLPGVVPGYEPPFRILPYGVKRTLGLKEGTALRRLSRVLPPHFALGRSRRHQ 1336
             P PVDAD+LPGVVP YEPPFRILPYGV+ ++G+KE TAL+RL+R LPPHFALGR+R+ Q
Sbjct: 414  DPLPVDADMLPGVVPDYEPPFRILPYGVRSSIGVKEATALKRLARRLPPHFALGRNRQLQ 473

Query: 1337 GLASAIVKLWEKSSIAKISLKRGVQLTSSERMAEEIKKLTGGAILSRNKDYIVIYRGKDF 1516
            GLA A+ KLWE+S IAKI+LKRGVQLT+SERMAEEIKKLTGG +LSRNKD++V YRGK F
Sbjct: 474  GLAIAMTKLWERSLIAKIALKRGVQLTTSERMAEEIKKLTGGMLLSRNKDFLVFYRGKSF 533

Query: 1517 LSPEITEALLERERLAKTLQDEEEQARLRASSSVALNDMSVIEPGIAGTLGETLEAHARW 1696
            LSPE+TEALLERERLAK+LQD+EEQARL+AS+ V   + +  + G AG+L ETL+A ARW
Sbjct: 534  LSPEVTEALLERERLAKSLQDKEEQARLKASAFVVPIEKTE-QSGTAGSLEETLDADARW 592

Query: 1697 GNDIDDDHANKMVRAAEMTRHANIVRKLERNLLIAEQKVDKAGRVLAKVEESLKPAEHVK 1876
            G  +DD H   ++R AE  RH ++VRKLER L  AE+K+ KA R LAKVE  + PA+   
Sbjct: 593  GKALDDKHKENVMREAEQLRHTDLVRKLERKLAFAERKLVKAERTLAKVEAFMTPAKRQA 652

Query: 1877 DPEPITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIIKAKTFSQ 2056
            +P+ ITEEERFMFRKLGLRMKAFLLLGRR VFDGT+ENMHLHWKYRELVKI+IKA +F  
Sbjct: 653  EPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDH 712

Query: 2057 VKNVALALEAESGGVLVSVDKVSKGFAIVVYRGRDYHRPPTLRPKNLLTKRKALARSIEL 2236
            VKN+AL LEAESGGVLVS+DKVSKG+AI+VYRG+DY RP  LRPKNLLTKRKALARSIEL
Sbjct: 713  VKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKRPSLLRPKNLLTKRKALARSIEL 772

Query: 2237 QRREALNRHISNLQKKVDQLRSELAQMDLAKDQGDEELYAKLDSAY 2374
            QR EAL +HIS +Q KV +L SE+ QM+  KDQGDE LY  LDSAY
Sbjct: 773  QRHEALLKHISAMQSKVGKLNSEIEQMEKVKDQGDEVLYNTLDSAY 818


>gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa Japonica
            Group]
          Length = 886

 Score =  821 bits (2120), Expect = 0.0
 Identities = 435/763 (57%), Positives = 551/763 (72%), Gaps = 12/763 (1%)
 Frame = +2

Query: 200  PKAHRFPENDLQRP-PWINGWRGPSFRPFP-KWPPSAVDYR-----HGLSSDDEEFXXXX 358
            P+ HR        P PW++ W     R  P + P SA+D R        S DD  F    
Sbjct: 24   PRLHRLLHLSTTSPYPWLSAWPTAHRRRVPLRRPASALDLRPEPSPSSDSDDDAAFGTSR 83

Query: 359  XXXXXXXXXIVEKLKKFGYIDDSEEVKESPLPEKGSVEDIFYAEDGILPDSRGGLSFDLN 538
                     I+ +L+  GY     E+   P P +GSVED+F  +DG++P++RGG   D  
Sbjct: 84   SSSRSAMSLILSRLRNSGYSYSPPELP--PRPPRGSVEDVFRVDDGVVPNARGGFDDDAE 141

Query: 539  EEI---RFPWEKPSEADNVAPARKKRTKTSLAELTLPEGELRRLRHMAIRTKSRTKIKGA 709
              +   RFPWE P       P R  R+K  +AELTLPE ELRRLRH  +R KSR K+ GA
Sbjct: 142  SALVDARFPWELPMPPPEAGP-RAARSKAWMAELTLPEAELRRLRHAGMRLKSRIKVGGA 200

Query: 710  GVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSISLYRG 889
            GVT+EIV+ I ++W+ +EVVR+K  G PALNM+  HEILERKTGGLVIWRSGTS+SLYRG
Sbjct: 201  GVTREIVERIRDRWRNDEVVRIKVTGTPALNMRLFHEILERKTGGLVIWRSGTSVSLYRG 260

Query: 890  VTYEIPQPVKIRYQSPERAGLNSFKRDT--YSLAQASEFSRGNHMEDFHECVSAEVDKRK 1063
            V Y+IP+P K   ++ +  G+ S  ++   +SL    +    N M+D +  + +  +K  
Sbjct: 261  VAYDIPEPTKGTSKNTQTLGMKSSIKEPPGHSLLPNEKV---NEMQDNNGALVSNAEKDT 317

Query: 1064 DLQLPPESHYDKEIDKLLDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVK 1243
             ++  PE  Y+ EIDKLLD+LGPRY DWP   P PVDADLLP  VPGY+PPFR+LPYGV+
Sbjct: 318  LVEPVPEIKYEDEIDKLLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVR 377

Query: 1244 RTLGLKEGTALRRLSRVLPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSS 1423
             +L  ++ T LRRL+R LPPHFALGRSR+ QGLA+A+VKLWEKSSIAKI+LKRGVQLT+S
Sbjct: 378  PSLSRRDTTNLRRLARGLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTS 437

Query: 1424 ERMAEEIKKLTGGAILSRNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLR 1603
            ERMAE+IKKLTGG +LSRN D++V YRGKDFLSPE+ E LLERER AK+LQDEE QARL 
Sbjct: 438  ERMAEDIKKLTGGVMLSRNNDFMVFYRGKDFLSPELAEKLLERERWAKSLQDEE-QARLN 496

Query: 1604 ASSSVALNDMSVIEPGIAGTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLE 1783
            A+SS +    + +EP +AGTLGETLEA++++GN +D+++ NKM R  E  RHA++VRKLE
Sbjct: 497  AASSFSSRTEAPVEPTVAGTLGETLEANSKYGNKLDENYENKMTRTVEAARHADLVRKLE 556

Query: 1784 RNLLIAEQKVDKAGRVLAKVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRR 1963
              L +A++K++KA RVL KVE +LKP E ++ PE IT+EERFMFRKLGLRMKAFLLLGRR
Sbjct: 557  WKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGRR 616

Query: 1964 GVFDGTIENMHLHWKYRELVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIV 2143
            GVFDGTIENMHLHWKYRELVKI++KAK+F  VK +AL+LEAESGG+LVSVDKVSKG+AIV
Sbjct: 617  GVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGYAIV 676

Query: 2144 VYRGRDYHRPPTLRPKNLLTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDL 2323
            V+RG+DY RP  LRP+NLL+KRKALARSIE+QRREAL+ HI+ L ++V +L++EL QM+ 
Sbjct: 677  VFRGKDYARPSKLRPRNLLSKRKALARSIEIQRREALSHHIATLNRRVKKLKAELLQMEG 736

Query: 2324 AKDQGDEELYAKLDSAYCXXXXXXXXXXXXXAYLNTLNSDVAV 2452
             K++GD ELYAKLDSAY              AYL + ++ VAV
Sbjct: 737  VKEEGDVELYAKLDSAY-SSDEEDVEDEDDEAYLRSFDNSVAV 778


>tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
          Length = 1523

 Score =  820 bits (2119), Expect = 0.0
 Identities = 441/787 (56%), Positives = 560/787 (71%), Gaps = 9/787 (1%)
 Frame = +2

Query: 242  PWINGWRGPSFRPFPKWPPSAVDYRHGLS----SDDEE-FXXXXXXXXXXXXXIVEKLKK 406
            PW+  W  P  R   + PP+A+D R   S    SDDE+               I+ +L++
Sbjct: 711  PWLYSWSHPRQRGRLRAPPAALDLRPEPSPSSDSDDEDAVGASRSSGRSTMSLILSRLRR 770

Query: 407  FGYIDDSEEVKESPLPEKGSVEDIFYAEDGILPDSRGGLSFDLNE----EIRFPWEKPSE 574
             GY  +       P P +GSVED+F A+DG+LP++RGG   D  E    + RFPWE+P  
Sbjct: 771  AGYSGEDPRAAAPPHPPRGSVEDVFRADDGVLPNARGGFDADDEERALGDARFPWERPMP 830

Query: 575  ADNVAPARKKRTKTSLAELTLPEGELRRLRHMAIRTKSRTKIKGAGVTKEIVDLIHEKWK 754
                AP R  R+ T +AELTLP  ELRRLRH AIR KSRTK+ GAGVT+EIV+ I EKWK
Sbjct: 831  PPEAAP-RSARSPTWMAELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWK 889

Query: 755  TEEVVRLKCEGPPALNMKRMHEILERKTGGLVIWRSGTSISLYRGVTYEIPQPVKIRYQS 934
            TEEVVR+K  G PALNM+  HEILERKTGGLVIWRSGTS+SLYRGV Y+ P+P K   ++
Sbjct: 890  TEEVVRVKVSGTPALNMRLFHEILERKTGGLVIWRSGTSVSLYRGVDYDEPEPTKKSKKN 949

Query: 935  PERAGLNSFKRDTYSLAQASEFSRGNHMEDFHECVSAEVDKRKDLQLPPESHYDKEIDKL 1114
             +   ++ F     S          N + D +  + +   K + +   PE  Y+ EIDKL
Sbjct: 950  SQSLAMD-FPIKGSSNPSLLPTETANSVRDSNVALVSNAAKEELVVQAPEIKYEDEIDKL 1008

Query: 1115 LDDLGPRYTDWPGNGPPPVDADLLPGVVPGYEPPFRILPYGVKRTLGLKEGTALRRLSRV 1294
            LD+LGPRYTDWPG+ P PVDADLLP  +PGY+PPFR+LPYGV+ +L  ++ T LRRL+R 
Sbjct: 1009 LDELGPRYTDWPGSDPLPVDADLLPANMPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARG 1068

Query: 1295 LPPHFALGRSRRHQGLASAIVKLWEKSSIAKISLKRGVQLTSSERMAEEIKKLTGGAILS 1474
            LPPHFALGRSR+ QGLA+A+VKLWEKSSIAKI+LKRGVQLT+SERMAE+IKKLTGG +LS
Sbjct: 1069 LPPHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGVMLS 1128

Query: 1475 RNKDYIVIYRGKDFLSPEITEALLERERLAKTLQDEEEQARLRASSSVALNDMSVIEPGI 1654
            RN ++IV YRGKDFLS E+ E LLERERLAK+LQDEEE AR +A+S  +  + +  +P +
Sbjct: 1129 RNNEFIVFYRGKDFLSSELAEVLLERERLAKSLQDEEE-ARRKAASYFSSAE-TYAQPTV 1186

Query: 1655 AGTLGETLEAHARWGNDIDDDHANKMVRAAEMTRHANIVRKLERNLLIAEQKVDKAGRVL 1834
            AGTLGETLEA++++G   D++HA+KM R  E  RHA++VRKLE  L +A++K++KA RVL
Sbjct: 1187 AGTLGETLEANSKYGTKHDENHADKMARTIEAARHADLVRKLEWKLSLAQKKMEKAERVL 1246

Query: 1835 AKVEESLKPAEHVKDPEPITEEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYR 2014
             KVE +L+P E  + PE IT+EERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYR
Sbjct: 1247 GKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYR 1306

Query: 2015 ELVKIIIKAKTFSQVKNVALALEAESGGVLVSVDKVSKGFAIVVYRGRDYHRPPTLRPKN 2194
            ELVKI++KAK+F+ VK +AL+LEAESGG+LVSVDKVSKG+AIVV+RG++Y RP +LRP+N
Sbjct: 1307 ELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRN 1366

Query: 2195 LLTKRKALARSIELQRREALNRHISNLQKKVDQLRSELAQMDLAKDQGDEELYAKLDSAY 2374
            LL+KRKALARSIELQR +AL+RH + L +KV++L++EL QM+  K+QGDEELYAKLD+AY
Sbjct: 1367 LLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAELVQMEDVKEQGDEELYAKLDAAY 1426

Query: 2375 CXXXXXXXXXXXXXAYLNTLNSDVAVDESMRXXXXXXXXXXXXXXGYPDTFARAAEIYNV 2554
                          AYL   +++VA   +                 YPD+   A +    
Sbjct: 1427 -SSDDEDMEDEDDEAYLKRFDNEVA-GATADDDGSDDYTSAADEADYPDSDDEAGDCSED 1484

Query: 2555 DEENGED 2575
            + E+ ED
Sbjct: 1485 EGEDDED 1491