BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00002621
         (885 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002448222.1| hypothetical protein SORBIDRAFT_06g023430 [S...   115   2e-23
ref|XP_004976324.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...   113   8e-23
ref|XP_004953239.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...   109   1e-21
ref|NP_001130966.1| uncharacterized LOC100192071 [Zea mays] gi|1...   109   2e-21
gb|AFW72516.1| putative RING zinc finger domain superfamily prot...   108   2e-21
ref|XP_003580198.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...   108   3e-21
ref|XP_006304178.1| hypothetical protein CARUB_v10010212mg [Caps...   107   4e-21
ref|XP_006416519.1| hypothetical protein EUTSA_v10008430mg [Eutr...   107   6e-21
ref|XP_002893041.1| zinc finger family protein [Arabidopsis lyra...   106   1e-20
gb|ACN25943.1| unknown [Zea mays] gi|413919011|gb|AFW58943.1| pu...   106   1e-20
ref|NP_001152715.1| ring domain containing protein [Zea mays] gi...   106   1e-20
gb|EXC07314.1| RING finger protein 5 [Morus notabilis]                105   2e-20
ref|XP_001773606.1| predicted protein [Physcomitrella patens] gi...   105   2e-20
ref|XP_006366026.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...   105   2e-20
ref|NP_564078.1| RING/U-box superfamily protein [Arabidopsis tha...   105   2e-20
ref|XP_002329420.1| predicted protein [Populus trichocarpa] gi|5...   105   2e-20
ref|XP_006652556.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...   104   4e-20
ref|XP_006652555.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...   104   4e-20
ref|XP_006467807.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...   104   4e-20
ref|XP_006376502.1| zinc finger family protein [Populus trichoca...   103   6e-20

>ref|XP_002448222.1| hypothetical protein SORBIDRAFT_06g023430 [Sorghum bicolor]
           gi|241939405|gb|EES12550.1| hypothetical protein
           SORBIDRAFT_06g023430 [Sorghum bicolor]
          Length = 260

 Score =  115 bits (288), Expect = 2e-23
 Identities = 58/119 (48%), Positives = 72/119 (60%), Gaps = 9/119 (7%)
 Frame = -3

Query: 691 MEAEYVPEPFSTDACMVSSTMDKPRDGDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDP 512
           MEA  V +P     CM ++T  +P   D           PVT  SGCFDC+ICLD   +P
Sbjct: 1   MEAGRVDQP-----CM-AATNSQPFVADIEPVKKASGDMPVTTGSGCFDCNICLDFAAEP 54

Query: 511 VVTFCGHLFCWPCIYKWMQA---------KSMSNQQCPVCKAFLSQDTIVPLFGRGRDS 362
           VVT CGHL+CWPCIY+W++           S + +QCPVCKA LS DT+VPL+GRG DS
Sbjct: 55  VVTLCGHLYCWPCIYEWLRPGVESTASDNSSSARRQCPVCKATLSTDTLVPLYGRGGDS 113


>ref|XP_004976324.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Setaria
           italica]
          Length = 405

 Score =  113 bits (283), Expect = 8e-23
 Identities = 56/119 (47%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
 Frame = -3

Query: 691 MEAEYVPEPFSTDACMVSSTMDKPRDGDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDP 512
           MEA  + +P     CM +    +P   D  A        P TM SGCFDC+ICLD   +P
Sbjct: 147 MEAGRMDQP-----CMAAIN-SQPLVADVEAVKKSSGDMPTTMGSGCFDCNICLDFAAEP 200

Query: 511 VVTFCGHLFCWPCIYKWMQA---------KSMSNQQCPVCKAFLSQDTIVPLFGRGRDS 362
           VVT CGHL+CWPCIY+W++           S + +QCPVCKA LS DT+VPL+GRG  S
Sbjct: 201 VVTLCGHLYCWPCIYEWLRPGVESTASDNSSSARRQCPVCKATLSPDTLVPLYGRGGSS 259


>ref|XP_004953239.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X1
           [Setaria italica] gi|514715415|ref|XP_004953240.1|
           PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like
           isoform X2 [Setaria italica]
           gi|514715419|ref|XP_004953241.1| PREDICTED: E3
           ubiquitin-protein ligase RMA1H1-like isoform X3 [Setaria
           italica]
          Length = 252

 Score =  109 bits (273), Expect = 1e-21
 Identities = 48/93 (51%), Positives = 61/93 (65%), Gaps = 6/93 (6%)
 Frame = -3

Query: 613 GDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQ------A 452
           GD PA       AP     GCFDC+ICL+   +PVVT CGHL+CWPCIY+W++      A
Sbjct: 18  GDEPAKRVVGGDAPAATGGGCFDCNICLECAAEPVVTLCGHLYCWPCIYEWLRPDADADA 77

Query: 451 KSMSNQQCPVCKAFLSQDTIVPLFGRGRDSGAK 353
            S + ++CPVCKA +S D +VPL+GRG  S AK
Sbjct: 78  GSSARRRCPVCKAAVSPDALVPLYGRGGSSRAK 110


>ref|NP_001130966.1| uncharacterized LOC100192071 [Zea mays] gi|194690576|gb|ACF79372.1|
           unknown [Zea mays] gi|195626014|gb|ACG34837.1| ring
           domain containing protein [Zea mays]
           gi|238013336|gb|ACR37703.1| unknown [Zea mays]
           gi|414586142|tpg|DAA36713.1| TPA: putative RING zinc
           finger domain superfamily protein [Zea mays]
          Length = 261

 Score =  109 bits (272), Expect = 2e-21
 Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 9/119 (7%)
 Frame = -3

Query: 691 MEAEYVPEPFSTDACMVSSTMDKPRDGDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDP 512
           MEA  + +PF      +++   +P   D           P T  SGCF+C+ICLD   +P
Sbjct: 1   MEAGRMDQPF------MAAINSQPFVEDIEPVKKASGDMPATTGSGCFECNICLDFASEP 54

Query: 511 VVTFCGHLFCWPCIYKWMQA---------KSMSNQQCPVCKAFLSQDTIVPLFGRGRDS 362
           VVTFCGHL+CWPCIY+W++           S + +QCPVCKA LS DT+VPL+GRG +S
Sbjct: 55  VVTFCGHLYCWPCIYEWLRPGVESAASDNSSSARRQCPVCKATLSTDTLVPLYGRGGNS 113


>gb|AFW72516.1| putative RING zinc finger domain superfamily protein [Zea mays]
          Length = 255

 Score =  108 bits (271), Expect = 2e-21
 Identities = 49/94 (52%), Positives = 62/94 (65%), Gaps = 7/94 (7%)
 Frame = -3

Query: 613 GDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQ------- 455
           GD PA  T          SGCFDC+ICL+   +PVVT CGHL+CWPCIY+W++       
Sbjct: 29  GDAPASGTSG--------SGCFDCNICLECATEPVVTLCGHLYCWPCIYEWLRHDVAEAG 80

Query: 454 AKSMSNQQCPVCKAFLSQDTIVPLFGRGRDSGAK 353
           A+S + +QCPVCKA +S D +VPL+GRG  S AK
Sbjct: 81  ARSSARRQCPVCKAAVSPDALVPLYGRGGSSSAK 114


>ref|XP_003580198.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Brachypodium
           distachyon]
          Length = 259

 Score =  108 bits (270), Expect = 3e-21
 Identities = 51/105 (48%), Positives = 62/105 (59%), Gaps = 9/105 (8%)
 Frame = -3

Query: 649 CMVSSTMDKPRDGDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCI 470
           CM +         D P  N   +  P    SG FDC+ICLD   DPVVT CGHL+CWPCI
Sbjct: 10  CMAAINSQPSVSDDKPMKNISGEM-PAAAGSGSFDCNICLDFAADPVVTLCGHLYCWPCI 68

Query: 469 YKWMQA---------KSMSNQQCPVCKAFLSQDTIVPLFGRGRDS 362
           Y+W+Q          +S + QQCPVCKA LS D++VPL+GRG  S
Sbjct: 69  YEWLQPAAESASSNNRSSARQQCPVCKATLSADSLVPLYGRGGSS 113


>ref|XP_006304178.1| hypothetical protein CARUB_v10010212mg [Capsella rubella]
           gi|482572889|gb|EOA37076.1| hypothetical protein
           CARUB_v10010212mg [Capsella rubella]
          Length = 229

 Score =  107 bits (268), Expect = 4e-21
 Identities = 45/83 (54%), Positives = 63/83 (75%)
 Frame = -3

Query: 610 DPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQAKSMSNQQ 431
           D P+C++ ++T+     SG F+C+ICLDL  DP+VT CGHLFCWPC+YKW+   S S ++
Sbjct: 3   DAPSCSSGNNTSGND--SGNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS-KE 59

Query: 430 CPVCKAFLSQDTIVPLFGRGRDS 362
           CPVCKA + +D +VPL+GRG+ S
Sbjct: 60  CPVCKAVIEEDRLVPLYGRGKSS 82


>ref|XP_006416519.1| hypothetical protein EUTSA_v10008430mg [Eutrema salsugineum]
           gi|557094290|gb|ESQ34872.1| hypothetical protein
           EUTSA_v10008430mg [Eutrema salsugineum]
          Length = 278

 Score =  107 bits (267), Expect = 6e-21
 Identities = 48/99 (48%), Positives = 65/99 (65%)
 Frame = -3

Query: 658 TDACMVSSTMDKPRDGDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGHLFCW 479
           T+  +V S  D P        N+ +D       SG F+C+ICLDL  DP+VT CGHLFCW
Sbjct: 45  TEVFLVESMSDIPSCSSGNNSNSNND-------SGNFECNICLDLAQDPIVTLCGHLFCW 97

Query: 478 PCIYKWMQAKSMSNQQCPVCKAFLSQDTIVPLFGRGRDS 362
           PC+YKW+   S+S ++CPVCKA + +D +VPL+GRG+ S
Sbjct: 98  PCLYKWLHLHSLS-KECPVCKAVIEEDKLVPLYGRGKSS 135


>ref|XP_002893041.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297338883|gb|EFH69300.1| zinc finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 226

 Score =  106 bits (265), Expect = 1e-20
 Identities = 45/83 (54%), Positives = 62/83 (74%)
 Frame = -3

Query: 610 DPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQAKSMSNQQ 431
           D P+C++ +DT   +  S  F+C+ICLDL  DP+VT CGHLFCWPC+YKW+   S S ++
Sbjct: 3   DVPSCSSGNDTN--SNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS-KE 59

Query: 430 CPVCKAFLSQDTIVPLFGRGRDS 362
           CPVCKA + +D +VPL+GRG+ S
Sbjct: 60  CPVCKAVIEEDRLVPLYGRGKSS 82


>gb|ACN25943.1| unknown [Zea mays] gi|413919011|gb|AFW58943.1| putative RING zinc
           finger domain superfamily protein isoform 1 [Zea mays]
           gi|413919012|gb|AFW58944.1| putative RING zinc finger
           domain superfamily protein isoform 2 [Zea mays]
          Length = 261

 Score =  106 bits (264), Expect = 1e-20
 Identities = 54/112 (48%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
 Frame = -3

Query: 670 EPFSTDACMVSSTMDKPRDGDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGH 491
           +PF  D   V     K   GD PA  T          SGCFDC+ICLD   +PVVT CGH
Sbjct: 17  QPFVADTEPV-----KKASGDMPAAPTG---------SGCFDCNICLDFAAEPVVTLCGH 62

Query: 490 LFCWPCIYKWMQA---------KSMSNQQCPVCKAFLSQDTIVPLFGRGRDS 362
           L+CWPCIY+W++           S + +QCPVCKA LS DT+VPL+GRG  S
Sbjct: 63  LYCWPCIYEWLRPGVESTASDNGSSARRQCPVCKATLSPDTLVPLYGRGGSS 114


>ref|NP_001152715.1| ring domain containing protein [Zea mays]
           gi|195659279|gb|ACG49107.1| ring domain containing
           protein [Zea mays]
          Length = 256

 Score =  106 bits (264), Expect = 1e-20
 Identities = 54/112 (48%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
 Frame = -3

Query: 670 EPFSTDACMVSSTMDKPRDGDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGH 491
           +PF  D   V     K   GD PA  T          SGCFDC+ICLD   +PVVT CGH
Sbjct: 12  QPFVADTEPV-----KKASGDMPAAPTG---------SGCFDCNICLDFAAEPVVTLCGH 57

Query: 490 LFCWPCIYKWMQA---------KSMSNQQCPVCKAFLSQDTIVPLFGRGRDS 362
           L+CWPCIY+W++           S + +QCPVCKA LS DT+VPL+GRG  S
Sbjct: 58  LYCWPCIYEWLRPGVESTASDNGSSARRQCPVCKATLSPDTLVPLYGRGGSS 109


>gb|EXC07314.1| RING finger protein 5 [Morus notabilis]
          Length = 235

 Score =  105 bits (263), Expect = 2e-20
 Identities = 43/86 (50%), Positives = 58/86 (67%)
 Frame = -3

Query: 619 RDGDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQAKSMS 440
           R    P+C+T  +       +G F+C+IC DL  DP+VT CGHLFCWPC+YKW+   S S
Sbjct: 11  RPSQGPSCSTNSNNNNNNGDAGSFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHIHSRS 70

Query: 439 NQQCPVCKAFLSQDTIVPLFGRGRDS 362
            + CPVCKA + +D +VPL+GRG+ S
Sbjct: 71  -KDCPVCKALIEEDKLVPLYGRGKSS 95


>ref|XP_001773606.1| predicted protein [Physcomitrella patens]
           gi|162675145|gb|EDQ61644.1| predicted protein
           [Physcomitrella patens]
          Length = 234

 Score =  105 bits (263), Expect = 2e-20
 Identities = 44/84 (52%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
 Frame = -3

Query: 616 DGDP-PACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQAKSMS 440
           DGDP P    +   A  +   G FDC+ICL+L  DPVVT CGHLFCWPC+Y+W+Q  S+ 
Sbjct: 15  DGDPHPVGGEETSAAGSSDQGGSFDCNICLELAQDPVVTLCGHLFCWPCLYRWLQMHSIC 74

Query: 439 NQQCPVCKAFLSQDTIVPLFGRGR 368
            Q+CPVCK  + +D ++PL+GRG+
Sbjct: 75  -QECPVCKGSVEEDKVIPLYGRGK 97


>ref|XP_006366026.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Solanum
           tuberosum]
          Length = 223

 Score =  105 bits (262), Expect = 2e-20
 Identities = 48/96 (50%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = -3

Query: 646 MVSSTMDKPRDGDPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCIY 467
           +  ST ++ R        T DD       +  FDC+ICLD+V DPVVTFCGHL+CWPCIY
Sbjct: 11  ITESTFNECRSSPSQKWKTLDDERDEDNRASGFDCNICLDVVKDPVVTFCGHLYCWPCIY 70

Query: 466 KWMQAKSMSNQ---QCPVCKAFLSQDTIVPLFGRGR 368
           KW+Q +S S+    QCPVCKA +SQ  ++PL+G G+
Sbjct: 71  KWIQFQSASDHQKPQCPVCKAKVSQKELIPLYGPGQ 106


>ref|NP_564078.1| RING/U-box superfamily protein [Arabidopsis thaliana]
           gi|8778447|gb|AAF79455.1|AC025808_37 F18O14.3
           [Arabidopsis thaliana] gi|16323202|gb|AAL15335.1|
           At1g19310/F18O14_14 [Arabidopsis thaliana]
           gi|21436031|gb|AAM51593.1| At1g19310/F18O14_14
           [Arabidopsis thaliana] gi|21553370|gb|AAM62463.1|
           unknown [Arabidopsis thaliana]
           gi|332191707|gb|AEE29828.1| RING/U-box superfamily
           protein [Arabidopsis thaliana]
          Length = 226

 Score =  105 bits (262), Expect = 2e-20
 Identities = 45/83 (54%), Positives = 60/83 (72%)
 Frame = -3

Query: 610 DPPACNTQDDTAPVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQAKSMSNQQ 431
           D P+C++ +DT      S  F+C+ICLDL  DP+VT CGHLFCWPC+YKW+   S S + 
Sbjct: 3   DVPSCSSGNDTN--NNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS-KD 59

Query: 430 CPVCKAFLSQDTIVPLFGRGRDS 362
           CPVCKA + +D +VPL+GRG+ S
Sbjct: 60  CPVCKAVIEEDRLVPLYGRGKSS 82


>ref|XP_002329420.1| predicted protein [Populus trichocarpa]
           gi|566243582|ref|XP_006371566.1| zinc finger family
           protein [Populus trichocarpa]
           gi|550317445|gb|ERP49363.1| zinc finger family protein
           [Populus trichocarpa]
          Length = 263

 Score =  105 bits (262), Expect = 2e-20
 Identities = 47/72 (65%), Positives = 55/72 (76%), Gaps = 8/72 (11%)
 Frame = -3

Query: 559 SGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQAKSMS--------NQQCPVCKAFLS 404
           S  FDC+ICLD V DPVVT CGHL+CWPCIYKW+ ++S+S         QQCPVCKA +S
Sbjct: 42  SNGFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLHSQSISAENQDQQPQQQCPVCKAEVS 101

Query: 403 QDTIVPLFGRGR 368
           Q TIVPLFGRG+
Sbjct: 102 QSTIVPLFGRGQ 113


>ref|XP_006652556.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X2
           [Oryza brachyantha]
          Length = 253

 Score =  104 bits (260), Expect = 4e-20
 Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 9/77 (11%)
 Frame = -3

Query: 574 PVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQA---------KSMSNQQCPV 422
           PVT  + CFDC+ICLD   +PVVT CGHL+CWPCIY+W++          +S S +QCPV
Sbjct: 29  PVTAGNACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLRPGVESTASNNRSSSRRQCPV 88

Query: 421 CKAFLSQDTIVPLFGRG 371
           CKA LS D +VPL+GRG
Sbjct: 89  CKATLSPDMLVPLYGRG 105


>ref|XP_006652555.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like isoform X1
           [Oryza brachyantha]
          Length = 270

 Score =  104 bits (260), Expect = 4e-20
 Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 9/77 (11%)
 Frame = -3

Query: 574 PVTMMSGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQA---------KSMSNQQCPV 422
           PVT  + CFDC+ICLD   +PVVT CGHL+CWPCIY+W++          +S S +QCPV
Sbjct: 46  PVTAGNACFDCNICLDFAAEPVVTLCGHLYCWPCIYEWLRPGVESTASNNRSSSRRQCPV 105

Query: 421 CKAFLSQDTIVPLFGRG 371
           CKA LS D +VPL+GRG
Sbjct: 106 CKATLSPDMLVPLYGRG 122


>ref|XP_006467807.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Citrus
           sinensis]
          Length = 240

 Score =  104 bits (260), Expect = 4e-20
 Identities = 43/69 (62%), Positives = 53/69 (76%), Gaps = 5/69 (7%)
 Frame = -3

Query: 559 SGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQAKSMS-----NQQCPVCKAFLSQDT 395
           +GCFDC+ICLD   DPVVT CGHL+CWPCIYKW+  +S S     + QCPVCKA +S  T
Sbjct: 25  NGCFDCNICLDFAYDPVVTLCGHLYCWPCIYKWLHVQSASLASDEHPQCPVCKADISHTT 84

Query: 394 IVPLFGRGR 368
           +VPL+GRG+
Sbjct: 85  MVPLYGRGQ 93


>ref|XP_006376502.1| zinc finger family protein [Populus trichocarpa]
           gi|550325778|gb|ERP54299.1| zinc finger family protein
           [Populus trichocarpa]
          Length = 263

 Score =  103 bits (258), Expect = 6e-20
 Identities = 47/72 (65%), Positives = 54/72 (75%), Gaps = 8/72 (11%)
 Frame = -3

Query: 559 SGCFDCSICLDLVVDPVVTFCGHLFCWPCIYKWMQAKSMS--------NQQCPVCKAFLS 404
           S  FDC+ICLD V DPVVT CGHL+CWPCIYKW+  +S+S         QQCPVCKA +S
Sbjct: 42  SSGFDCNICLDSVHDPVVTLCGHLYCWPCIYKWLHFQSISAENQDQHPQQQCPVCKAEVS 101

Query: 403 QDTIVPLFGRGR 368
           Q TIVPLFGRG+
Sbjct: 102 QSTIVPLFGRGQ 113