BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00001922
         (827 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|54035746...   309   9e-82
ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus] g...   302   8e-80
gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus]             300   3e-79
gb|AHG32725.1| ORF3, partial [Dioscorea rotundata]                    292   9e-77
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]               292   1e-76
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]               292   1e-76
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|3478...   291   1e-76
emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao s...   291   2e-76
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               291   3e-76
ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16...   291   3e-76
gb|ACH86211.1| unknown [Citrus yellow mosaic virus]                   290   4e-76
gb|AER00538.1| ORF III [Citrus yellow mosaic virus]                   289   7e-76
gb|AER00544.1| ORF III [Citrus yellow mosaic virus]                   289   1e-75
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               288   1e-75
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   288   2e-75
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]               287   4e-75
gb|AHG94942.1| ORF3, partial [Dioscorea bacilliform virus]            285   1e-74
emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]               283   7e-74
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]               283   7e-74
gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]                282   9e-74

>ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|540357465|gb|AGV08293.1| ORF3
            [Piper yellow mottle virus]
          Length = 1925

 Score =  309 bits (791), Expect = 9e-82
 Identities = 140/260 (53%), Positives = 194/260 (74%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+E+L+C+ +KDL+PFL DY+ LA+KTGR+F G +LSEK W+KLPG LG
Sbjct: 739  GSTKIQDEAYRDLEQLTCSNIKDLVPFLNDYLRLAAKTGRMFLGTELSEKLWMKLPGNLG 798

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
            RRIK AFD KY+GN  GV PR++FT+KYLE++CK+ AF RSLK ++FCN +PI       
Sbjct: 799  RRIKEAFDNKYKGNEAGVIPRILFTHKYLEDQCKEAAFQRSLKGMTFCNSIPI-PGYYSK 857

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+RRSTTYKGKPH +H R+E            C+LCGEEGHFA+DC +  ++ +RV
Sbjct: 858  EKKMGVRRSTTYKGKPHSSHVRIEKRKHLLRNKNCKCYLCGEEGHFAKDCNRNKRDIRRV 917

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTNSYMIG 104
            A+FEGLE+P+D++++SV EG++ SDAI+S+SEGED  + T+ +  ++ VF E+  +Y +G
Sbjct: 918  AIFEGLELPEDHDVVSVSEGEDDSDAIYSVSEGEDGSIATMTH--YINVFFEEDRTYWVG 975

Query: 103  KTEGWQPMVKISKVQHDCNH 44
            K   WQPM+K+++  HDC H
Sbjct: 976  KAGSWQPMIKVTQKVHDCQH 995


>ref|YP_001036293.1| ORF3 protein [Dioscorea bacilliform virus]
            gi|113901272|gb|ABI47983.1| ORF3 protein [Dioscorea
            bacilliform virus]
          Length = 1887

 Score =  302 bits (774), Expect = 8e-80
 Identities = 141/262 (53%), Positives = 192/262 (73%), Gaps = 2/262 (0%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +Q+ AYRD+ER+SC  V+D+IPF+ +YM +A+KTGRLF   +LSEKFW+KLPG+LG
Sbjct: 771  GSTKIQEDAYRDLERISCKDVQDIIPFMNEYMRIAAKTGRLFISSELSEKFWMKLPGDLG 830

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
            + IK +FD+ Y GNT+GVHPR++FTYKYL+EECKK A SRSLK+L FC+++PI       
Sbjct: 831  KTIKDSFDKTYVGNTVGVHPRILFTYKYLQEECKKAALSRSLKNLQFCSKIPIPGYYKGR 890

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+R+STTYKGKPH +H R+E            CFLCG EGHFAR+CP + +N KR+
Sbjct: 891  EKKYGVRKSTTYKGKPHDSHVRIERRKHLIRSKKCKCFLCGAEGHFARECPNDKRNVKRI 950

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGED--HQVNTVLNQEFLFVFIEQTNSYM 110
            A+FEG+EIP+D EI+SVQEGDE SD+IFS+SEGE+    +N  + Q  L++  E    ++
Sbjct: 951  AIFEGMEIPEDCEIVSVQEGDELSDSIFSVSEGEEVLQSLNPFIQQNLLYIREEDGKHFL 1010

Query: 109  IGKTEGWQPMVKISKVQHDCNH 44
             G   GW+  V+++  +HDC+H
Sbjct: 1011 GG--GGWRAAVQVTPQEHDCHH 1030


>gb|ABI47986.1| ORF3 protein [Dioscorea bacilliform virus]
          Length = 1295

 Score =  300 bits (769), Expect = 3e-79
 Identities = 140/262 (53%), Positives = 191/262 (72%), Gaps = 2/262 (0%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GS  +Q+ AYRD+ER+SC  V+D+IPF+ +YM +A+KTGRLF   +LSEKFW+KLPG+LG
Sbjct: 771  GSAKIQEDAYRDLERISCKDVQDIIPFMNEYMRIAAKTGRLFISSELSEKFWMKLPGDLG 830

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
            + IK +FD+ Y GNT+GVHPR++FTYKYL+EECKK A SRSLK+L FC+++PI       
Sbjct: 831  KTIKDSFDKTYVGNTVGVHPRILFTYKYLQEECKKAALSRSLKNLQFCSKIPIPGYYKGR 890

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+R+STTYKGKPH +H R+E            CFLCG EGHFAR+CP + +N KR+
Sbjct: 891  EKKYGVRKSTTYKGKPHDSHVRIERRKHLIRSKKCKCFLCGAEGHFARECPNDKRNVKRI 950

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGED--HQVNTVLNQEFLFVFIEQTNSYM 110
            A+FEG+EIP+D EI+SVQEGDE SD+IFS+SEGE+    +N  + Q  L++  E    ++
Sbjct: 951  AIFEGMEIPEDCEIVSVQEGDELSDSIFSVSEGEEVLQSLNPFIQQNLLYIREEDGKHFL 1010

Query: 109  IGKTEGWQPMVKISKVQHDCNH 44
             G   GW+  V+++  +HDC+H
Sbjct: 1011 GG--GGWRAAVQVTPQEHDCHH 1030


>gb|AHG32725.1| ORF3, partial [Dioscorea rotundata]
          Length = 1257

 Score =  292 bits (748), Expect = 9e-77
 Identities = 137/263 (52%), Positives = 188/263 (71%), Gaps = 3/263 (1%)
 Frame = -2

Query: 823 GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
           GST +Q+ AYRD+ER++C  V+ +IPF+ +YM +A+KTGRLF   +LSEKFW+KLPG+LG
Sbjct: 135 GSTKVQEEAYRDLERIACKDVQSIIPFMNEYMRIAAKTGRLFISSELSEKFWMKLPGDLG 194

Query: 643 RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
           + IK  F++ + GNT+GVHPR++FTYKYL+EECKK A +RSLK+L FC+++PI       
Sbjct: 195 KVIKEQFEKTHVGNTIGVHPRILFTYKYLQEECKKAALARSLKNLQFCSKIPIPGYYQGK 254

Query: 463 XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
               G+R+STTYKGKPH +H R+E            CFLCG EGHFAR+CP + +N KR+
Sbjct: 255 EKKYGVRKSTTYKGKPHDSHVRIERRKHLVRSKKRKCFLCGAEGHFARECPSDKRNVKRI 314

Query: 283 ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLN---QEFLFVFIEQTNSY 113
           A+FEG+EIPDD +I+SVQEGDE SD+IFS+SEGE  +    LN   Q  L    ++   Y
Sbjct: 315 AIFEGMEIPDDCDIVSVQEGDEMSDSIFSVSEGEGGEGLQSLNPVIQHHLLYLRQEDGKY 374

Query: 112 MIGKTEGWQPMVKISKVQHDCNH 44
            +G   GW+  V++++ +HDC H
Sbjct: 375 FLG-GGGWRAAVQVTQQEHDCRH 396


>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1976

 Score =  292 bits (747), Expect = 1e-76
 Identities = 149/274 (54%), Positives = 195/274 (71%), Gaps = 3/274 (1%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ VK ++ +L D+M +A+KTGR+F GP+LSEK WLK+PG+LG
Sbjct: 764  GSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLG 823

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPI--XXXXX 470
            +R+K A++EK+ GN +GV PR++F YKYLE ECK  AF RSLK+LSFC+ +PI       
Sbjct: 824  QRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGR 883

Query: 469  XXXXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTK 290
                  G+RR+TTYKGKPH THAR+E            C+LCGEEGHFAR+CP + +N K
Sbjct: 884  SSEKRYGIRRTTTYKGKPHNTHARIE-KTKHLRNKKCKCYLCGEEGHFARECPNDRRNVK 942

Query: 289  RVALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTN-SY 113
            RVA+FEGL++PDD EI+S+ EGD  SDAIFSISEGE+    T   +E  FVF E+ N +Y
Sbjct: 943  RVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEE----TGAFEEQCFVFQEECNGTY 998

Query: 112  MIGKTEGWQPMVKISKVQHDCNHILEINLYISPP 11
             +GK  G+Q +V+ISK  + C H  E N  I  P
Sbjct: 999  WLGKRGGYQDLVQISKEIYYCQHEWEENQPIDDP 1032


>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
          Length = 1839

 Score =  292 bits (747), Expect = 1e-76
 Identities = 138/265 (52%), Positives = 188/265 (70%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ +KD++ FL DY  LA+K+GRLF G +LSEK W+K+P ELG
Sbjct: 633  GSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELG 692

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
             R+K AF ++Y GN +GV PR++F Y+YLE+ECK  AF RSLK LSFC  MP+       
Sbjct: 693  HRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPL-TGYYDK 751

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+R+S TYKGKPH +HARVE            C+LCG+EGHFAR+CP + ++ KRV
Sbjct: 752  TSKYGMRKSRTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNQRRDVKRV 811

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTNSYMIG 104
            A+FEG+++P+ ++I+SV+EG+E SDAI+SISE ED +++T    E +FV  E+  SY +G
Sbjct: 812  AIFEGIDLPEGFDIVSVEEGEEESDAIYSISENEDGELDTEAVHEKVFVMREEDQSYWLG 871

Query: 103  KTEGWQPMVKISKVQHDCNHILEIN 29
            KT  W  MV++S  Q+ C H  E N
Sbjct: 872  KTNHWTAMVRVSSQQYHCMHQWEHN 896


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] gi|347871|gb|AAA03171.1|
            polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score =  291 bits (746), Expect = 1e-76
 Identities = 137/265 (51%), Positives = 189/265 (71%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ +KD++ FL DY  LA+K+GRLF G +LSEK W+K+P ELG
Sbjct: 633  GSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELG 692

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
             R+K AF ++Y GN +GV PR++F Y+YLE+ECK  AF RSLK LSFC  MP+       
Sbjct: 693  HRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPL-TGYYDK 751

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+R+S TYKGKPH +HARVE            C+LCG+EGHFAR+CP + ++ KRV
Sbjct: 752  TSKYGMRKSRTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNQRRDVKRV 811

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTNSYMIG 104
            A+FEG+++P+ ++I+SV+EG+E SDAI+SISE ED +++T +  E +F+  E+  SY +G
Sbjct: 812  AIFEGIDLPEGFDIVSVEEGEEESDAIYSISENEDGELDTEVVHEKVFMMREEDQSYWLG 871

Query: 103  KTEGWQPMVKISKVQHDCNHILEIN 29
            KT  W  MV++S  Q+ C H  E N
Sbjct: 872  KTNHWTAMVRVSSQQYHCMHQWEHN 896


>emb|CAG70342.1| CP, RT, RNaseH and protease polyprotein [Cacao swollen shoot virus]
          Length = 1868

 Score =  291 bits (745), Expect = 2e-76
 Identities = 139/269 (51%), Positives = 187/269 (69%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+CN +KD++ FL  Y  LA+K+GRLF G +LSEK W+K+P ELG
Sbjct: 664  GSTRIQDAAYRDLERLTCNNIKDIVQFLNGYGRLAAKSGRLFLGAELSEKLWMKMPPELG 723

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
             R+K AF ++Y GN +GV PR++F Y+YLE+ECK  AF RSLK LSFC  MP+       
Sbjct: 724  HRMKEAFQKEYAGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPL-TGYYDK 782

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+RRS TYKGKPH +HARVE            C+LCG+EGHFAR+CP   ++ KRV
Sbjct: 783  APRYGMRRSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNTKRDVKRV 842

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTNSYMIG 104
            A+FEG+ +P+DY+I+SV+EG+E SDAI+SISE E+     V++QE +F+  E+  SY +G
Sbjct: 843  AIFEGINLPEDYDIVSVEEGEEESDAIYSISENEEELKEEVVHQEKIFMMKEEDQSYWLG 902

Query: 103  KTEGWQPMVKISKVQHDCNHILEINLYIS 17
            K   W  MV+++  Q+ C H  E N  I+
Sbjct: 903  KPNHWTAMVRVNHQQYHCEHQWEHNKEIT 931


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  291 bits (744), Expect = 3e-76
 Identities = 149/274 (54%), Positives = 197/274 (71%), Gaps = 3/274 (1%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ VK ++ +L D+M +A+KTGR+F GP+LSEK WLK+PG+LG
Sbjct: 757  GSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLG 816

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPI--XXXXX 470
            +R+K A++EK+ GN +GV PR++F YKYLE ECK  AF RSLK+LSFC+ +PI       
Sbjct: 817  QRMKKAYEEKHPGNIIGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGK 876

Query: 469  XXXXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTK 290
                  G+RR+TTYKGKPH THAR+E            C+LCGEEGHFAR+CP + +N K
Sbjct: 877  SGEKRYGVRRTTTYKGKPHSTHARIE-KTKHLRNKKCKCYLCGEEGHFARECPNDRRNVK 935

Query: 289  RVALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTN-SY 113
            RVA+FEGL++PDD EI+S+ EGD  SDAIFSISEGE  +  T+  +E  FVF E+ N +Y
Sbjct: 936  RVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGE--EAGTL--EEQCFVFQEECNGTY 991

Query: 112  MIGKTEGWQPMVKISKVQHDCNHILEINLYISPP 11
             +GK  G+Q +V+ISK  + C H  E N  I+ P
Sbjct: 992  WLGKRGGYQDLVQISKEIYYCQHEWEENQPINDP 1025


>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
            gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
            yellow mosaic virus]
          Length = 1983

 Score =  291 bits (744), Expect = 3e-76
 Identities = 149/274 (54%), Positives = 197/274 (71%), Gaps = 3/274 (1%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ VK ++ +L D+M +A+KTGR+F GP+LSEK WLK+PG+LG
Sbjct: 772  GSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLG 831

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPI--XXXXX 470
            +R+K A++EK+ GN +GV PR++F YKYLE ECK  AF RSLK+LSFC+ +PI       
Sbjct: 832  QRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGK 891

Query: 469  XXXXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTK 290
                  G+RR+TTYKGKPH THAR+E            C+LCGEEGHFAR+CP + +N K
Sbjct: 892  SGEKRYGVRRTTTYKGKPHSTHARIE-KTKHLRNKKCKCYLCGEEGHFARECPNDRRNVK 950

Query: 289  RVALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTN-SY 113
            RVA+FEGL++PDD EI+S+ EGD  SDAIFSISEGE  +  T+  +E  FVF E+ N +Y
Sbjct: 951  RVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGE--EAGTL--EEQCFVFQEECNGTY 1006

Query: 112  MIGKTEGWQPMVKISKVQHDCNHILEINLYISPP 11
             +GK  G+Q +V+ISK  + C H  E N  I+ P
Sbjct: 1007 WLGKRGGYQDLVQISKEIYYCQHEWEENQPINDP 1040


>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
          Length = 1490

 Score =  290 bits (742), Expect = 4e-76
 Identities = 148/274 (54%), Positives = 195/274 (71%), Gaps = 3/274 (1%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ VK ++ +L D+M +A+KTGR+F GP+LSEK WLK+PG+LG
Sbjct: 280  GSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLG 339

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPI--XXXXX 470
            +R+K A++EK+ GN +GV PR++F YKYLE ECK  AF RSLK+LSFC+ +PI       
Sbjct: 340  QRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGR 399

Query: 469  XXXXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTK 290
                  G+RR+TTYKGKPH THAR+E            C+LCGEEGHFAR+CP + +N K
Sbjct: 400  SGEKRYGVRRTTTYKGKPHNTHARIE-KTKHLRNKKCKCYLCGEEGHFARECPSDRRNVK 458

Query: 289  RVALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTN-SY 113
            RVA+FEGL++PDD EI+S+ EG+  SDAIFSISEGE+    T   +E  FVF E+ N +Y
Sbjct: 459  RVAMFEGLDLPDDCEIVSIDEGEPDSDAIFSISEGEE----TGAIEEQCFVFQEECNGTY 514

Query: 112  MIGKTEGWQPMVKISKVQHDCNHILEINLYISPP 11
             +GK  G+Q +V+ISK  + C H  E N  I  P
Sbjct: 515  WLGKRGGYQDLVQISKEIYYCQHEWEENQPIDDP 548


>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
          Length = 1982

 Score =  289 bits (740), Expect = 7e-76
 Identities = 149/274 (54%), Positives = 196/274 (71%), Gaps = 3/274 (1%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ VK ++ +L D+M +A+KTGR+F GP+LSEK WLK+PG+LG
Sbjct: 771  GSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLG 830

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPI--XXXXX 470
            +R+K A++EK+ GN +GV PR++F YKYLE ECK  AF RSLK+LSFC+ +PI       
Sbjct: 831  QRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGK 890

Query: 469  XXXXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTK 290
                  G+RR+TTYKGKPH THAR+E            C+LCGEEGHFAR+CP + +N K
Sbjct: 891  SGEKRYGVRRTTTYKGKPHSTHARIE-KTKHLRNKKCKCYLCGEEGHFARECPNDRRNVK 949

Query: 289  RVALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTN-SY 113
            RVA+FEGL +PDD EI+S+ EGD  SDAIFSISEGE  +  T+  +E  FVF E+ N +Y
Sbjct: 950  RVAMFEGLGLPDDCEIVSIDEGDPDSDAIFSISEGE--EAGTL--EEQCFVFQEECNGTY 1005

Query: 112  MIGKTEGWQPMVKISKVQHDCNHILEINLYISPP 11
             +GK  G+Q +V+ISK  + C H  E N  I+ P
Sbjct: 1006 WLGKRGGYQDLVQISKEIYYCQHEWEENQPINDP 1039


>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
          Length = 1976

 Score =  289 bits (739), Expect = 1e-75
 Identities = 148/274 (54%), Positives = 194/274 (70%), Gaps = 3/274 (1%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ VK ++ +L D+M +A+KTGR+F GP+LSEK WLK+PG+LG
Sbjct: 764  GSTAVQDEAYRDLERLTCDLVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLG 823

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPI--XXXXX 470
            +R+K A++EK+ GN +GV PR++F YKYLE ECK  AF RSLK+LSFC+ +PI       
Sbjct: 824  QRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGR 883

Query: 469  XXXXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTK 290
                  G+RR+TTYKGKPH THAR+E            C+LCGEE HFAR+CP + +N K
Sbjct: 884  SSEKRYGIRRTTTYKGKPHNTHARIE-KTKHLRNKKCKCYLCGEERHFARECPNDRRNVK 942

Query: 289  RVALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTN-SY 113
            RVA+FEGL++PDD EI+S+ EGD  SDAIFSISEGE+    T   +E  FVF E+ N +Y
Sbjct: 943  RVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEE----TGAFEEQCFVFQEECNGTY 998

Query: 112  MIGKTEGWQPMVKISKVQHDCNHILEINLYISPP 11
             +GK  G+Q +V+ISK  + C H  E N  I  P
Sbjct: 999  WLGKRGGYQDLVQISKETYYCQHEWEENQPIDDP 1032


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  288 bits (738), Expect = 1e-75
 Identities = 147/268 (54%), Positives = 192/268 (71%), Gaps = 3/268 (1%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ VK ++ +L D+M +A+KTGR F GP+LSEK WLK+PG+LG
Sbjct: 756  GSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRTFIGPELSEKLWLKMPGDLG 815

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPI--XXXXX 470
            +R+K A++EK+ GN +GV PR++F YKYLE ECK  AF RSLK+LSFC+ +PI       
Sbjct: 816  QRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGR 875

Query: 469  XXXXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTK 290
                  G+RR+TTYKGKPH THAR+E            C+LCGEEGHFAR+CP + +N K
Sbjct: 876  SGEKRYGVRRTTTYKGKPHNTHARIE-KTKHLRNKKCKCYLCGEEGHFARECPNDRRNVK 934

Query: 289  RVALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTN-SY 113
            RVA+FEGL++PDD EI+S+ EGD  SDAIFSISEGE+    T   +E  FVF E+ N +Y
Sbjct: 935  RVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEE----TGAIEEQCFVFQEECNGTY 990

Query: 112  MIGKTEGWQPMVKISKVQHDCNHILEIN 29
             +GK  G+Q +V+ISK  + C H  E N
Sbjct: 991  WLGKRGGYQDLVQISKEIYYCQHEWEEN 1018


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
            gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
            bacilliform virus GD1]
          Length = 1892

 Score =  288 bits (736), Expect = 2e-75
 Identities = 141/268 (52%), Positives = 190/268 (70%), Gaps = 3/268 (1%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERLSC  +KD++ FL DY  LA+K+GR+F  P+LSEK WLK+P +LG
Sbjct: 683  GSTAVQDEAYRDLERLSCTNIKDIVSFLNDYARLAAKSGRMFISPELSEKLWLKMPYDLG 742

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
             +I+ A++ K++GNT+GV PR++FTYKYLE+ECK+ AF RSLK+LSFC++MP+       
Sbjct: 743  NKIRTAYEAKHEGNTIGVFPRILFTYKYLEQECKEAAFRRSLKNLSFCSEMPL-PGYYGE 801

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+RRSTTYKGKPH THAR+E            C+LCGE GHFAR+CP + KNT+RV
Sbjct: 802  KKRYGVRRSTTYKGKPHPTHARIEKQKHLVRNKRCKCYLCGEMGHFARECPNDKKNTRRV 861

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQV--NTVLNQEFLFVFIEQT-NSY 113
            A++E L IP+ +E++SV+EG+E SDAIFSISE ED           E +F+F E T N Y
Sbjct: 862  AMYEQLNIPEGFEVVSVEEGEEVSDAIFSISENEDEDALHTGGAFAETIFMFHEGTDNVY 921

Query: 112  MIGKTEGWQPMVKISKVQHDCNHILEIN 29
              GK +G+ P  +I++ Q  C H  ++N
Sbjct: 922  WAGKKDGYLPYKRITREQFQCEHEWQMN 949


>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1979

 Score =  287 bits (734), Expect = 4e-75
 Identities = 149/276 (53%), Positives = 195/276 (70%), Gaps = 5/276 (1%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ VK ++ +L D+M +A+KTGR+F GP+LSEK WLK+PG+LG
Sbjct: 764  GSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLG 823

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPI--XXXXX 470
            +R+K A++EK+ GN +GV PR++F YKYLE ECK  AF RSLK+LSFC+ +PI       
Sbjct: 824  QRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGR 883

Query: 469  XXXXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTK 290
                  G+RR+TTYKGKPH THAR+E            C+LCGEEGHFAR+CP + +N K
Sbjct: 884  SSERRYGIRRTTTYKGKPHNTHARIE-KTKHLRNKKCKCYLCGEEGHFARECPNDRRNVK 942

Query: 289  RVALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTN-SY 113
            RVA+FEGL++PDD EI+S+ EGD  SDAIFSISEGE+    T   +E  FVF E+ N +Y
Sbjct: 943  RVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEE----TGAFEEQCFVFQEECNGTY 998

Query: 112  MIGKTEGWQPMVK--ISKVQHDCNHILEINLYISPP 11
             +GK  G+Q +V+  ISK  + C H  E N  I  P
Sbjct: 999  WLGKRGGYQDLVQIPISKEIYYCQHEWEENQPIDDP 1034


>gb|AHG94942.1| ORF3, partial [Dioscorea bacilliform virus]
          Length = 1395

 Score =  285 bits (729), Expect = 1e-74
 Identities = 139/275 (50%), Positives = 190/275 (69%), Gaps = 15/275 (5%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +Q++AY D+ER+SC  VKDLIPFL +YM LA+KTGRLF   +LS+K W+KLPG+LG
Sbjct: 248  GSTKVQEQAYLDLERISCRDVKDLIPFLNEYMRLAAKTGRLFISAELSDKIWMKLPGDLG 307

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
            +RIK  FDE+Y GNT+GVHPR++F YK+LEEECK  AF RS+K+L FC+++PI       
Sbjct: 308  KRIKTKFDEQYAGNTIGVHPRIMFIYKFLEEECKNAAFMRSMKNLQFCSKIPIPGYYGGA 367

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+R+S TYKGKPHQ+H R+E            CFLCG+EGH+AR+CP + ++ KRV
Sbjct: 368  EKKYGVRKSKTYKGKPHQSHVRIEKRKHLTREKRCKCFLCGKEGHYARECPNDRRDIKRV 427

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGE----DHQVNTVL-----------NQE 149
            A+FEGL IP+D++I+SV EG+E SDAI+S+SEGE    D +VNT +            Q 
Sbjct: 428  AIFEGLSIPEDFDIVSVHEGEEQSDAIYSVSEGENESIDPEVNTFILYGEGGRGTTPTQT 487

Query: 148  FLFVFIEQTNSYMIGKTEGWQPMVKISKVQHDCNH 44
              ++  E T ++      G +  VK+++ +HDC H
Sbjct: 488  LYYLREEGTITHYYLGGGGTKVSVKVTQKEHDCTH 522


>emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]
          Length = 1770

 Score =  283 bits (723), Expect = 7e-74
 Identities = 136/270 (50%), Positives = 189/270 (70%), Gaps = 1/270 (0%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ +KD++ FL DY  LA+K+GRLF G +LSEK W+K+P ELG
Sbjct: 561  GSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELG 620

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
             R+K AF ++Y GN +GV PR++F Y+YLE+ECK  AF RSLK LSFC  MP+       
Sbjct: 621  NRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPL-TGYYDK 679

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+R+S TYKGKPH +HARVE            C+LCG+EGHFAR+CP   ++ KRV
Sbjct: 680  TPKYGMRKSKTYKGKPHASHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDVKRV 739

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGE-DHQVNTVLNQEFLFVFIEQTNSYMI 107
            A+FEG+ +P+ ++I+SV+EG++ SDAI+SISE E + +++  + QE +F+  E+  SY +
Sbjct: 740  AIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENEEELDAEVVQEKVFMMREEDQSYWL 799

Query: 106  GKTEGWQPMVKISKVQHDCNHILEINLYIS 17
            GKT  W  MV++S  Q+ C H  E N  I+
Sbjct: 800  GKTNHWTAMVRVSSQQYYCLHQWEHNKEIT 829


>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
          Length = 1816

 Score =  283 bits (723), Expect = 7e-74
 Identities = 135/270 (50%), Positives = 189/270 (70%), Gaps = 1/270 (0%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ +KD++ FL DY  LA+K+GRLF G +LSEK W+K+P ELG
Sbjct: 637  GSTRIQDAAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELG 696

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
             R+K AF ++Y GN +GV PR++F Y+YLE+ECK  AF RSLK LSFC  MP+       
Sbjct: 697  NRMKEAFQKEYSGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPL-TGYYDK 755

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+R+S TYKGKPH +HAR+E            C+LCG+EGHFAR+CP   ++ KRV
Sbjct: 756  TPKYGMRKSKTYKGKPHASHARIEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDVKRV 815

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGED-HQVNTVLNQEFLFVFIEQTNSYMI 107
            A+FEG+ +P+ ++I+SV+EG++ SDAI+SISE E+  +++  + QE +F+  E+  SY +
Sbjct: 816  AIFEGINLPEGFDIVSVEEGEDDSDAIYSISENENGEELDAEVVQEKVFMMREEDQSYWL 875

Query: 106  GKTEGWQPMVKISKVQHDCNHILEINLYIS 17
            GKT  W  MV++S  Q+ C H  E N  I+
Sbjct: 876  GKTNHWTAMVRVSSQQYHCLHQWEHNKEIT 905


>gb|AFM82591.1| polyprotein [Cacao swollen shoot virus]
          Length = 1872

 Score =  282 bits (722), Expect = 9e-74
 Identities = 136/265 (51%), Positives = 186/265 (70%)
 Frame = -2

Query: 823  GSTDMQDRAYRDMERLSCNQVKDLIPFLTDYMHLASKTGRLFTGPDLSEKFWLKLPGELG 644
            GST +QD AYRD+ERL+C+ +KD++ FL DY  LA+K+GRLF G +LSEK W+K+P ELG
Sbjct: 666  GSTRIQDSAYRDLERLTCHNIKDIVQFLNDYGRLAAKSGRLFIGTELSEKLWMKMPPELG 725

Query: 643  RRIKAAFDEKYQGNTMGVHPRVIFTYKYLEEECKKTAFSRSLKDLSFCNQMPIXXXXXXX 464
             R++ AF ++Y+GN +GV PR++F Y+YLE+ECK  AF RSLK LSFC  MP+       
Sbjct: 726  HRMREAFQKEYEGNEVGVFPRILFAYRYLEQECKDAAFKRSLKSLSFCKDMPL-TGYYDK 784

Query: 463  XXXXGLRRSTTYKGKPHQTHARVEXXXXXXXXXXXXCFLCGEEGHFARDCPKEYKNTKRV 284
                G+RRS TYKGKPH +HAR+E            C+L G+EGHFAR+CP   ++ KRV
Sbjct: 785  SSRYGMRRSKTYKGKPHASHARIEKRKHLVRNKRCKCYLRGDEGHFARECPNNKRDVKRV 844

Query: 283  ALFEGLEIPDDYEILSVQEGDEPSDAIFSISEGEDHQVNTVLNQEFLFVFIEQTNSYMIG 104
            A+FEG+ +PDDYEI+SV+EG+E SDAI+S+SE E+   + VL+++ +F+  E   SY +G
Sbjct: 845  AIFEGINLPDDYEIVSVEEGEEDSDAIYSLSENEEELQDEVLHEK-VFMIREGDQSYWMG 903

Query: 103  KTEGWQPMVKISKVQHDCNHILEIN 29
            K   W  MV++S  Q+ C H  E N
Sbjct: 904  KANHWTAMVRVSYQQYHCPHQWEHN 928