BLASTX nr result
ID: Zingiber25_contig00001621
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00001621
(347 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270819.1| PREDICTED: 50S ribosomal protein L18, chloro... 111 9e-23
ref|XP_006349873.1| PREDICTED: 50S ribosomal protein L18, chloro... 111 1e-22
ref|XP_004252957.1| PREDICTED: 50S ribosomal protein L18, chloro... 111 1e-22
gb|EOY31693.1| Ribosomal L18p/L5e family protein isoform 2 [Theo... 110 1e-22
gb|EOY31692.1| Ribosomal L18p/L5e family protein isoform 1 [Theo... 110 1e-22
ref|XP_006848386.1| hypothetical protein AMTR_s00013p00209880 [A... 108 7e-22
ref|XP_004297049.1| PREDICTED: 50S ribosomal protein L18, chloro... 108 9e-22
ref|XP_002509912.1| 50S ribosomal protein L18, chloroplast precu... 108 9e-22
gb|EMJ27162.1| hypothetical protein PRUPE_ppa012509mg [Prunus pe... 107 2e-21
ref|XP_002314349.1| predicted protein [Populus trichocarpa] gi|5... 107 2e-21
ref|XP_006393423.1| hypothetical protein EUTSA_v10011822mg [Eutr... 106 3e-21
ref|XP_003595392.1| 50S ribosomal protein L18 [Medicago truncatu... 106 3e-21
gb|ACJ84202.1| unknown [Medicago truncatula] 106 3e-21
ref|XP_003595391.1| 50S ribosomal protein L18 [Medicago truncatu... 106 3e-21
ref|XP_002891426.1| ribosomal protein L18 family protein [Arabid... 105 5e-21
ref|XP_004147640.1| PREDICTED: 50S ribosomal protein L18, chloro... 105 6e-21
ref|XP_006306511.1| hypothetical protein CARUB_v10012508mg [Caps... 105 8e-21
ref|NP_175268.1| 50S ribosomal protein L18/L5e family protein [A... 103 2e-20
ref|XP_002334329.1| predicted protein [Populus trichocarpa] 103 3e-20
ref|XP_006441940.1| hypothetical protein CICLE_v10022561mg [Citr... 102 5e-20
>ref|XP_002270819.1| PREDICTED: 50S ribosomal protein L18, chloroplastic isoform 1
[Vitis vinifera] gi|189096139|pdb|3BBO|Q Chain Q,
Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
gi|147854297|emb|CAN83428.1| hypothetical protein
VITISV_034871 [Vitis vinifera]
gi|297736841|emb|CBI26042.3| unnamed protein product
[Vitis vinifera]
Length = 161
Score = 111 bits (278), Expect = 9e-23
Identities = 60/89 (67%), Positives = 66/89 (74%)
Frame = +2
Query: 80 RSTFLGGQLLFFRPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTPERPR 259
+S F Q L P LP+ I I AKA TRRE+RTARH RIRKKV GTPERPR
Sbjct: 9 QSAFASSQQLPLLPKFAAAKPLLPSFPI-IEAKAKTRREDRTARHVRIRKKVEGTPERPR 67
Query: 260 MCIYRSNKHLYVQVIDDSKMHTLASASTM 346
+C++RSNKHLYVQVIDDSKMHTLASASTM
Sbjct: 68 LCVFRSNKHLYVQVIDDSKMHTLASASTM 96
>ref|XP_006349873.1| PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Solanum
tuberosum]
Length = 162
Score = 111 bits (277), Expect = 1e-22
Identities = 52/66 (78%), Positives = 59/66 (89%)
Frame = +2
Query: 149 PATAISIVAKATTRRENRTARHERIRKKVNGTPERPRMCIYRSNKHLYVQVIDDSKMHTL 328
P +++ AKA TRRE+RTARH RIRKKV GTPERPRMC++RSNKH+YVQVIDDSKMHTL
Sbjct: 32 PIRVLTVEAKAKTRREDRTARHIRIRKKVEGTPERPRMCVFRSNKHIYVQVIDDSKMHTL 91
Query: 329 ASASTM 346
ASASTM
Sbjct: 92 ASASTM 97
>ref|XP_004252957.1| PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Solanum
lycopersicum]
Length = 162
Score = 111 bits (277), Expect = 1e-22
Identities = 52/66 (78%), Positives = 59/66 (89%)
Frame = +2
Query: 149 PATAISIVAKATTRRENRTARHERIRKKVNGTPERPRMCIYRSNKHLYVQVIDDSKMHTL 328
P +++ AKA TRRE+RTARH RIRKKV GTPERPRMC++RSNKH+YVQVIDDSKMHTL
Sbjct: 32 PIRVLTVEAKAKTRREDRTARHIRIRKKVEGTPERPRMCVFRSNKHIYVQVIDDSKMHTL 91
Query: 329 ASASTM 346
ASASTM
Sbjct: 92 ASASTM 97
>gb|EOY31693.1| Ribosomal L18p/L5e family protein isoform 2 [Theobroma cacao]
Length = 139
Score = 110 bits (276), Expect = 1e-22
Identities = 57/88 (64%), Positives = 69/88 (78%)
Frame = +2
Query: 83 STFLGGQLLFFRPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTPERPRM 262
S+FLG L P +P +LP+ +++ AKA TRRE+ ARH RIRKKV GTP+RPR+
Sbjct: 27 SSFLGVSLSPRLPCPHP---SLPSILLNVQAKARTRREDCQARHSRIRKKVEGTPDRPRL 83
Query: 263 CIYRSNKHLYVQVIDDSKMHTLASASTM 346
C++RSNKHLYVQVIDDSKMHTLASASTM
Sbjct: 84 CVFRSNKHLYVQVIDDSKMHTLASASTM 111
>gb|EOY31692.1| Ribosomal L18p/L5e family protein isoform 1 [Theobroma cacao]
Length = 176
Score = 110 bits (276), Expect = 1e-22
Identities = 57/88 (64%), Positives = 69/88 (78%)
Frame = +2
Query: 83 STFLGGQLLFFRPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTPERPRM 262
S+FLG L P +P +LP+ +++ AKA TRRE+ ARH RIRKKV GTP+RPR+
Sbjct: 27 SSFLGVSLSPRLPCPHP---SLPSILLNVQAKARTRREDCQARHSRIRKKVEGTPDRPRL 83
Query: 263 CIYRSNKHLYVQVIDDSKMHTLASASTM 346
C++RSNKHLYVQVIDDSKMHTLASASTM
Sbjct: 84 CVFRSNKHLYVQVIDDSKMHTLASASTM 111
>ref|XP_006848386.1| hypothetical protein AMTR_s00013p00209880 [Amborella trichopoda]
gi|548851692|gb|ERN09967.1| hypothetical protein
AMTR_s00013p00209880 [Amborella trichopoda]
Length = 164
Score = 108 bits (270), Expect = 7e-22
Identities = 51/74 (68%), Positives = 60/74 (81%)
Frame = +2
Query: 125 KNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTPERPRMCIYRSNKHLYVQVI 304
+ P + + I AKA TRRENR ARHERIRKKV G+PERPR+C++RSNKH+YVQVI
Sbjct: 26 RTPLFALKRTPLLRIDAKAATRRENRVARHERIRKKVEGSPERPRLCVFRSNKHMYVQVI 85
Query: 305 DDSKMHTLASASTM 346
DDSKMHTLA+ASTM
Sbjct: 86 DDSKMHTLAAASTM 99
>ref|XP_004297049.1| PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Fragaria
vesca subsp. vesca]
Length = 159
Score = 108 bits (269), Expect = 9e-22
Identities = 57/89 (64%), Positives = 71/89 (79%), Gaps = 2/89 (2%)
Frame = +2
Query: 86 TFLGG-QLLFFRPNKNPFTSTLPAT-AISIVAKATTRRENRTARHERIRKKVNGTPERPR 259
+F+G Q L+ RP ++ P + ++ I AKATT+RE+RTARH RIRKKV GT ERPR
Sbjct: 6 SFVGSSQQLWMRPKFVGVSAPKPQSQSLVIEAKATTKREDRTARHIRIRKKVEGTTERPR 65
Query: 260 MCIYRSNKHLYVQVIDDSKMHTLASASTM 346
+C++RSNKHLYVQVIDD+KMHTLASASTM
Sbjct: 66 LCVFRSNKHLYVQVIDDTKMHTLASASTM 94
>ref|XP_002509912.1| 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus
communis] gi|223549811|gb|EEF51299.1| 50S ribosomal
protein L18, chloroplast precursor, putative [Ricinus
communis]
Length = 164
Score = 108 bits (269), Expect = 9e-22
Identities = 55/77 (71%), Positives = 59/77 (76%)
Frame = +2
Query: 116 RPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTPERPRMCIYRSNKHLYV 295
RPN P P + I A TRRENRTARH RIRKKV GTPERPR+ ++RSNKHLYV
Sbjct: 26 RPNPTPIQ---PPRFLRIEANTKTRRENRTARHVRIRKKVEGTPERPRLSVFRSNKHLYV 82
Query: 296 QVIDDSKMHTLASASTM 346
QVIDDSKMHTLASASTM
Sbjct: 83 QVIDDSKMHTLASASTM 99
>gb|EMJ27162.1| hypothetical protein PRUPE_ppa012509mg [Prunus persica]
Length = 166
Score = 107 bits (266), Expect = 2e-21
Identities = 57/96 (59%), Positives = 71/96 (73%), Gaps = 9/96 (9%)
Frame = +2
Query: 86 TFLG-----GQLLFFRPNKNPFTSTLP----ATAISIVAKATTRRENRTARHERIRKKVN 238
+FLG Q L+ RP T+TL + ++ + AKATT+RE+RTARH RIRKKV
Sbjct: 6 SFLGTAIASSQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHIRIRKKVE 65
Query: 239 GTPERPRMCIYRSNKHLYVQVIDDSKMHTLASASTM 346
GTPERPR+ ++RSNKH+Y QVIDD+KMHTLASASTM
Sbjct: 66 GTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTM 101
>ref|XP_002314349.1| predicted protein [Populus trichocarpa]
gi|566257383|ref|XP_006388561.1| ribosomal protein L18
[Populus trichocarpa] gi|118487426|gb|ABK95541.1|
unknown [Populus trichocarpa]
gi|550310400|gb|ERP47475.1| ribosomal protein L18
[Populus trichocarpa]
Length = 165
Score = 107 bits (266), Expect = 2e-21
Identities = 49/62 (79%), Positives = 58/62 (93%)
Frame = +2
Query: 161 ISIVAKATTRRENRTARHERIRKKVNGTPERPRMCIYRSNKHLYVQVIDDSKMHTLASAS 340
+++ AKA TRRE+RTARH RIRKKV GTP+RPR+C++RSNKHLYVQVIDD+KMHTLASAS
Sbjct: 39 VTVEAKAKTRREDRTARHIRIRKKVEGTPDRPRLCVFRSNKHLYVQVIDDTKMHTLASAS 98
Query: 341 TM 346
TM
Sbjct: 99 TM 100
>ref|XP_006393423.1| hypothetical protein EUTSA_v10011822mg [Eutrema salsugineum]
gi|557090001|gb|ESQ30709.1| hypothetical protein
EUTSA_v10011822mg [Eutrema salsugineum]
Length = 173
Score = 106 bits (265), Expect = 3e-21
Identities = 54/92 (58%), Positives = 68/92 (73%), Gaps = 4/92 (4%)
Frame = +2
Query: 80 RSTFLGGQL----LFFRPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTP 247
RS FLG L +F +P + + +L + ++ + +K T E+R ARH RIRKKVNGT
Sbjct: 16 RSAFLGSGLQRRAVFLKPWSSSSSFSLQSRSLVVESKTKTSSEDRIARHSRIRKKVNGTT 75
Query: 248 ERPRMCIYRSNKHLYVQVIDDSKMHTLASAST 343
ERPRMC++RSNKHLYVQVIDD+KMHTLASAST
Sbjct: 76 ERPRMCVFRSNKHLYVQVIDDTKMHTLASAST 107
>ref|XP_003595392.1| 50S ribosomal protein L18 [Medicago truncatula]
gi|355484440|gb|AES65643.1| 50S ribosomal protein L18
[Medicago truncatula]
Length = 136
Score = 106 bits (265), Expect = 3e-21
Identities = 52/80 (65%), Positives = 66/80 (82%)
Frame = +2
Query: 107 LFFRPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTPERPRMCIYRSNKH 286
LF P NP +S+ +++S V +ATTRRE+R ARH R+RKK+ GTPERPR+ ++RSNKH
Sbjct: 25 LFTIPTPNPNSSS---SSLSFVVQATTRREDRIARHVRLRKKIEGTPERPRLSVFRSNKH 81
Query: 287 LYVQVIDDSKMHTLASASTM 346
L+VQVIDD+KMHTLASASTM
Sbjct: 82 LFVQVIDDTKMHTLASASTM 101
>gb|ACJ84202.1| unknown [Medicago truncatula]
Length = 166
Score = 106 bits (265), Expect = 3e-21
Identities = 52/80 (65%), Positives = 66/80 (82%)
Frame = +2
Query: 107 LFFRPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTPERPRMCIYRSNKH 286
LF P NP +S+ +++S V +ATTRRE+R ARH R+RKK+ GTPERPR+ ++RSNKH
Sbjct: 25 LFTIPTPNPNSSS---SSLSFVVQATTRREDRIARHVRLRKKIEGTPERPRLSVFRSNKH 81
Query: 287 LYVQVIDDSKMHTLASASTM 346
L+VQVIDD+KMHTLASASTM
Sbjct: 82 LFVQVIDDTKMHTLASASTM 101
>ref|XP_003595391.1| 50S ribosomal protein L18 [Medicago truncatula]
gi|124360326|gb|ABN08339.1| Ribosomal protein L18
[Medicago truncatula] gi|355484439|gb|AES65642.1| 50S
ribosomal protein L18 [Medicago truncatula]
gi|388519743|gb|AFK47933.1| unknown [Medicago
truncatula]
Length = 166
Score = 106 bits (265), Expect = 3e-21
Identities = 52/80 (65%), Positives = 66/80 (82%)
Frame = +2
Query: 107 LFFRPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTPERPRMCIYRSNKH 286
LF P NP +S+ +++S V +ATTRRE+R ARH R+RKK+ GTPERPR+ ++RSNKH
Sbjct: 25 LFTIPTPNPNSSS---SSLSFVVQATTRREDRIARHVRLRKKIEGTPERPRLSVFRSNKH 81
Query: 287 LYVQVIDDSKMHTLASASTM 346
L+VQVIDD+KMHTLASASTM
Sbjct: 82 LFVQVIDDTKMHTLASASTM 101
>ref|XP_002891426.1| ribosomal protein L18 family protein [Arabidopsis lyrata subsp.
lyrata] gi|297337268|gb|EFH67685.1| ribosomal protein
L18 family protein [Arabidopsis lyrata subsp. lyrata]
Length = 170
Score = 105 bits (263), Expect = 5e-21
Identities = 56/92 (60%), Positives = 69/92 (75%), Gaps = 4/92 (4%)
Frame = +2
Query: 80 RSTFLGGQL----LFFRPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTP 247
RSTFLG L +F +P + S+L + ++ + AK T E+R ARH RIRKKVNGT
Sbjct: 16 RSTFLGSGLQHRAVFLKPWSS---SSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTT 72
Query: 248 ERPRMCIYRSNKHLYVQVIDDSKMHTLASAST 343
ERPR+C++RSNKHLYVQVIDD+KMHTLASAST
Sbjct: 73 ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST 104
>ref|XP_004147640.1| PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Cucumis
sativus] gi|449498793|ref|XP_004160635.1| PREDICTED: 50S
ribosomal protein L18, chloroplastic-like [Cucumis
sativus]
Length = 170
Score = 105 bits (262), Expect = 6e-21
Identities = 57/94 (60%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Frame = +2
Query: 80 RSTFLG---GQLLFFRPNKN--PFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGT 244
R++FL Q + RP+ + P TS+ ++ + AKATTRRE+RTARH RIRKKV GT
Sbjct: 12 RTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGT 71
Query: 245 PERPRMCIYRSNKHLYVQVIDDSKMHTLASASTM 346
ERPR+ ++RSNKHLYVQVIDDSKMHTLA+ STM
Sbjct: 72 TERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTM 105
>ref|XP_006306511.1| hypothetical protein CARUB_v10012508mg [Capsella rubella]
gi|482575222|gb|EOA39409.1| hypothetical protein
CARUB_v10012508mg [Capsella rubella]
Length = 171
Score = 105 bits (261), Expect = 8e-21
Identities = 55/92 (59%), Positives = 69/92 (75%), Gaps = 4/92 (4%)
Frame = +2
Query: 80 RSTFLGGQL----LFFRPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTP 247
RS FLG L +F +P + +S+L + ++ + +K T E+R ARH RIRKKVNGT
Sbjct: 16 RSAFLGNGLQHRAVFLKPWSS--SSSLQSRSLVVESKTKTSSEDRIARHSRIRKKVNGTT 73
Query: 248 ERPRMCIYRSNKHLYVQVIDDSKMHTLASAST 343
ERPR+C++RSNKHLYVQVIDDSKMHTLASAST
Sbjct: 74 ERPRLCVFRSNKHLYVQVIDDSKMHTLASAST 105
>ref|NP_175268.1| 50S ribosomal protein L18/L5e family protein [Arabidopsis thaliana]
gi|73621536|sp|Q9SX68.1|RK18_ARATH RecName: Full=50S
ribosomal protein L18, chloroplastic; AltName:
Full=CL18; Flags: Precursor
gi|5733872|gb|AAD49760.1|AC007932_8 Similar to 50S
Ribosomal protein L18 from Thermotoga maritima
gb|AE001798. ESTs gb|AI993387, gb|T75951 and gb|T22182
come from this gene [Arabidopsis thaliana]
gi|12484209|gb|AAG54003.1|AF336922_1 putative ribosomal
protein L18 [Arabidopsis thaliana]
gi|110740956|dbj|BAE98573.1| hypothetical protein
[Arabidopsis thaliana] gi|332194156|gb|AEE32277.1| 50S
ribosomal protein L18/L5e family protein [Arabidopsis
thaliana]
Length = 170
Score = 103 bits (258), Expect = 2e-20
Identities = 55/92 (59%), Positives = 68/92 (73%), Gaps = 4/92 (4%)
Frame = +2
Query: 80 RSTFLGGQL----LFFRPNKNPFTSTLPATAISIVAKATTRRENRTARHERIRKKVNGTP 247
RS FLG L +F +P + S+L + ++ + AK T E+R ARH RIRKKVNGT
Sbjct: 16 RSAFLGNGLQHRAVFLKPWSS---SSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTT 72
Query: 248 ERPRMCIYRSNKHLYVQVIDDSKMHTLASAST 343
ERPR+C++RSNKHLYVQVIDD+KMHTLASAST
Sbjct: 73 ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST 104
>ref|XP_002334329.1| predicted protein [Populus trichocarpa]
Length = 165
Score = 103 bits (256), Expect = 3e-20
Identities = 48/58 (82%), Positives = 54/58 (93%)
Frame = +2
Query: 173 AKATTRRENRTARHERIRKKVNGTPERPRMCIYRSNKHLYVQVIDDSKMHTLASASTM 346
AK TRRE+RTARH RIRKKV GTP+RPR+C++RSNKHLYVQVIDD+KMHTLASASTM
Sbjct: 43 AKPQTRREDRTARHIRIRKKVEGTPDRPRLCVFRSNKHLYVQVIDDTKMHTLASASTM 100
>ref|XP_006441940.1| hypothetical protein CICLE_v10022561mg [Citrus clementina]
gi|557544202|gb|ESR55180.1| hypothetical protein
CICLE_v10022561mg [Citrus clementina]
Length = 171
Score = 102 bits (254), Expect = 5e-20
Identities = 49/70 (70%), Positives = 59/70 (84%), Gaps = 4/70 (5%)
Frame = +2
Query: 149 PATAISIVAKATTR----RENRTARHERIRKKVNGTPERPRMCIYRSNKHLYVQVIDDSK 316
PA + +A+TR RE+RTARH RIRKK++GTPERPR+C++RSNKHLYVQVIDD+K
Sbjct: 37 PAPPSLFIVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTK 96
Query: 317 MHTLASASTM 346
MHTLASASTM
Sbjct: 97 MHTLASASTM 106