BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00001278
         (2042 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006827418.1| hypothetical protein AMTR_s00009p00072720 [A...   424   e-116
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              417   e-113
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   414   e-113
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   397   e-108
ref|XP_002326192.1| predicted protein [Populus trichocarpa]           397   e-108
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe...   396   e-107
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   391   e-106
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   391   e-106
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   391   e-106
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   390   e-105
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   390   e-105
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   389   e-105
ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF,...   386   e-104
ref|XP_006577030.1| PREDICTED: RNA polymerase sigma factor sigF,...   377   e-102
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   377   e-102
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...   377   e-102
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   376   e-101
ref|XP_006293947.1| hypothetical protein CARUB_v10022939mg [Caps...   376   e-101
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,...   375   e-101
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   374   e-101

>ref|XP_006827418.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
            gi|548832038|gb|ERM94834.1| hypothetical protein
            AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  424 bits (1090), Expect = e-116
 Identities = 243/535 (45%), Positives = 326/535 (60%), Gaps = 10/535 (1%)
 Frame = +1

Query: 205  SAVQVHQYSTSLPSQQRDDFKTKIVQAIPDKVLATANREYSKEREKHEFDQCLKYLKRQL 384
            ++V +H+    L S      + K  Q + D+           E +  E DQ LK  +RQL
Sbjct: 48   ASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTEVYASIGAETKNFEIDQYLKDFERQL 107

Query: 385  LHEHDLWYLFPHNMEKHSL--------PVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAP 540
            L+   LWYL P  +   SL        P+  ++++++   S    T       +  S  P
Sbjct: 108  LYWPALWYLSPSRILPKSLLSLPFQCKPLETDIESEIKE-SRKKQT-------NCSSLNP 159

Query: 541  TDVLELSTKAMIASKRPVFLVDQSNIS--DIEFDKSHFFSLDERPVDGTFTNQQVTIRSG 714
             DVL L+ +A++ASK    LV+ S+++  + + D S    L E  +     + + TIRS 
Sbjct: 160  MDVLVLAKRAVMASKAAAALVEHSDLTVGNPDGDISPCSGLKEICIQVPDEDMRTTIRSK 219

Query: 715  RLLEXXXXXXXXXXXXDNFDYVVPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTF 894
            R LE             +F       +            D ND L  FL GP TKQLLT 
Sbjct: 220  RHLERQIKRRRVPKKLKDFSANFEIGKKPEKVKNKSF--DPNDPLRFFLWGPITKQLLTE 277

Query: 895  KEEKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDK 1074
            KEE +LF +I+DLMR+E+VK+ L +Q   EPT+ EWA+A G+S   LQSC+  GR SR+K
Sbjct: 278  KEESELFVKIQDLMRVEEVKKELEMQFGCEPTVVEWARAAGMSYGSLQSCIHFGRKSREK 337

Query: 1075 MISANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHS 1254
            MI AN RLVVHVA+ Y+G+GL +QDLLQEGS GLMKS EKFKP  G RF TYAYWWIR +
Sbjct: 338  MIYANFRLVVHVAKNYQGRGLSIQDLLQEGSVGLMKSLEKFKPKTGCRFSTYAYWWIRQA 397

Query: 1255 IKKAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEGHLPTNEEVAKRVGITVDKLESLLL 1434
            I+K++FQNSRTIR+PEN + +L  IKNARRL  QEGH PTNEE+A+RVGITVDKLE++ +
Sbjct: 398  IRKSLFQNSRTIRLPENVYGLLTKIKNARRLYFQEGHRPTNEELAQRVGITVDKLETVRV 457

Query: 1435 NTRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAII 1614
             +++PVSI+   WSD D T QEI ADP +E+P+  +AKQ+MR HV +LL +L P+E+ +I
Sbjct: 458  FSKLPVSIQQPVWSDQDVTIQEITADPKVETPEKNVAKQLMRRHVRNLLSLLNPRERQVI 517

Query: 1615 QLQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
             L+FGI   ERKSLS+IG M+ +SKERIRQ+ ++A          QGLE Y ELL
Sbjct: 518  NLRFGIQGRERKSLSEIGGMFNVSKERIRQVESKALEKLKNCTQTQGLEVYAELL 572


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  417 bits (1071), Expect = e-113
 Identities = 244/573 (42%), Positives = 346/573 (60%), Gaps = 11/573 (1%)
 Frame = +1

Query: 94   LLSPSPSPVIPRTHLGSLGLNYVSIIFEQARKPNYNVSAVQVHQYSTSLPSQQRDDFKTK 273
            +LS +PS   PRTH  +   + V ++ +Q      ++      ++ TS+  Q++ D    
Sbjct: 7    ILSSTPS-FPPRTHFRNSSSS-VLMLHDQVAPAVASIPTTIARKFPTSVLLQEQRDEYRP 64

Query: 274  IVQAIPDKVLATANREYSK--------EREKHEFDQCLKYLKRQLLHEHDLWYLFPHNME 429
              QA+ D+    A  E  +        E    + +Q +   +RQLL +  LWY  P +  
Sbjct: 65   FPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQT 124

Query: 430  KHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPTDVLELSTKAMIASKRPVFLVDQ 609
                P S  +   +T+           D  +S    P DVL L+ KA+ ASK+ V L + 
Sbjct: 125  GEKSPFSSSIMKSITT-----------DIENSMDVKPCDVLALAKKALSASKQAVSLYEN 173

Query: 610  SNI--SDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXXDNFDYVV 783
            + +  +D+E   S        P       ++ T+RS RLLE             + ++  
Sbjct: 174  AKLLGADLEDSPSPSLGAISSP---NLPLEEKTVRSTRLLERRSKKRRNPKVAVHENH-- 228

Query: 784  PSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERL 963
              SR            D  D L LFL GPET++LLT KEE +L  QI++LMRLE+VK+RL
Sbjct: 229  -GSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRL 287

Query: 964  RLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDL 1143
            +   KREPT+ EWA+AVG+SC  LQS L SG  SR K+I ANLR+VVH+A+QY+G+GL+L
Sbjct: 288  QSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNL 347

Query: 1144 QDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLK 1323
            QDLLQEGS GLM S EKFKP AG RF +YAYWWIR +++KAIFQ+SRTIR+PEN +++L 
Sbjct: 348  QDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLG 407

Query: 1324 NIKNARRLCIQEGHL-PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQE 1500
             +K A+RL IQEGH  PT EE+A+RVGIT++KL+ LLL+TR+P+S++   W+D D TFQE
Sbjct: 408  KVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQE 467

Query: 1501 IVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYG 1680
            + AD  IE PD+++AKQ+MR HV +LL +L PKE+ II+L+FGI     ++LS+IG ++G
Sbjct: 468  VTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFG 527

Query: 1681 LSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
             SKER+RQ+  +A         + GLE+Y +LL
Sbjct: 528  FSKERVRQLEQRALHKLKQCLSSHGLESYTDLL 560


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  414 bits (1065), Expect = e-113
 Identities = 244/583 (41%), Positives = 347/583 (59%), Gaps = 21/583 (3%)
 Frame = +1

Query: 94   LLSPSPSPVIPRTHLGSLGLN----------YVSIIFEQARKPNYNVSAVQVHQYSTSLP 243
            +LS +PS   PRTH  +   +          +V ++ +Q      ++      ++ TS+ 
Sbjct: 7    ILSSTPS-FPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTTIARKFPTSVL 65

Query: 244  SQQRDDFKTKIVQAIPDKVLATANREYSK--------EREKHEFDQCLKYLKRQLLHEHD 399
             Q++ D      QA+ D+    A  E  +        E    + +Q +   +RQLL +  
Sbjct: 66   LQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPG 125

Query: 400  LWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPTDVLELSTKAMIA 579
            LWY  P +      P S  +   +T+           D  +S    P DVL L+ KA+ A
Sbjct: 126  LWYSLPSSQTGEKSPFSSSIMKSITT-----------DIENSMDVKPCDVLALAKKALSA 174

Query: 580  SKRPVFLVDQSNI--SDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXX 753
            SK+ V L + + +  +D+E   S        P       ++ T+RS RLLE         
Sbjct: 175  SKQAVSLYENAKLLGADLEDSPSPSLGAISSP---NLPLEEKTVRSTRLLERRSKKRRNP 231

Query: 754  XXXDNFDYVVPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDL 933
                + ++    SR            D  D L LFL GPET++LLT KEE +L  QI++L
Sbjct: 232  KVAVHENH---GSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQEL 288

Query: 934  MRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVA 1113
            MRLE+VK+RL+   KREPT+ EWA+AVG+SC  LQS L SG  SR K+I ANLR+VVH+A
Sbjct: 289  MRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIA 348

Query: 1114 RQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIR 1293
            +QY+G+GL+LQDLLQEGS GLM S EKFKP AG RF +YAYWWIR +++KAIFQ+SRTIR
Sbjct: 349  KQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIR 408

Query: 1294 IPENAFAVLKNIKNARRLCIQEGHL-PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRP 1470
            +PEN +++L  +K A+RL IQEGH  PT EE+A+RVGIT++KL+ LLL+TR+P+S++   
Sbjct: 409  LPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPV 468

Query: 1471 WSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERK 1650
            W+D D TFQE+ AD  IE PD+++AKQ+MR HV +LL +L PKE+ II+L+FGI     +
Sbjct: 469  WADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPR 528

Query: 1651 SLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            +LS+IG ++G SKER+RQ+  +A         + GLE+Y +LL
Sbjct: 529  TLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLL 571


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  397 bits (1021), Expect = e-108
 Identities = 246/574 (42%), Positives = 332/574 (57%), Gaps = 12/574 (2%)
 Frame = +1

Query: 94   LLSPSPSPVIPRTHLGSLGLNYVSIIFEQARKPNYNVSAVQVHQY--STSLPSQQRDDFK 267
            LLS SPS    RTHL +   + V I+ EQA     ++      Q+  ++ L  +QRD+F+
Sbjct: 7    LLSSSPS-FPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFR 65

Query: 268  T--------KIVQAIPDKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHN 423
                     +  QA  D+          + ++  E DQ ++  + QL H    W L    
Sbjct: 66   PLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWNL---- 121

Query: 424  MEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPTDVLELSTKAMIASKRPVFLV 603
                                  +  I +E         PT+V+ L+ +A+ ASK   FL 
Sbjct: 122  ---------------------TDKLIDVE---------PTNVINLAKRALSASKHAAFLA 151

Query: 604  DQS-NISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXXDNFDYV 780
            D + ++ ++    S  FSL+E  +          +RS R L             D   + 
Sbjct: 152  DNNTDLDNLASTSSSSFSLEEVKI----------VRSRRHLARQSLNRRAPKTKDLI-FE 200

Query: 781  VPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKER 960
               S++ +         D ND L LFL GPETKQLLT KEE +L  QI+DLM LE VK R
Sbjct: 201  TYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNR 260

Query: 961  LRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLD 1140
            L  Q  REPTL EWAQAVG+SCH L+  L SG  SR+K+I+ANLR+VVH+A++Y+ +GL 
Sbjct: 261  LESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLG 320

Query: 1141 LQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVL 1320
            LQDLLQEG+ GLMKS EKFKP AG RF TYAYWWIR +I KAIFQ+SRTIR+PEN + +L
Sbjct: 321  LQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLL 380

Query: 1321 KNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQ 1497
              +  A+R  IQEG H PT EE+A+RVGI +DKLE LL  TR P+S++   WSD + TFQ
Sbjct: 381  GKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQ 440

Query: 1498 EIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMY 1677
            EI AD  IE PD+++AKQ+MR H+  LL IL  KE+ II+L+FGI   ++KSLS+IG ++
Sbjct: 441  EITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVF 500

Query: 1678 GLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            GLSKER+RQ+ ++A         + GL+AY +LL
Sbjct: 501  GLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534


>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  397 bits (1021), Expect = e-108
 Identities = 246/574 (42%), Positives = 332/574 (57%), Gaps = 12/574 (2%)
 Frame = +1

Query: 94   LLSPSPSPVIPRTHLGSLGLNYVSIIFEQARKPNYNVSAVQVHQY--STSLPSQQRDDFK 267
            LLS SPS    RTHL +   + V I+ EQA     ++      Q+  ++ L  +QRD+F+
Sbjct: 7    LLSSSPS-FPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFR 65

Query: 268  T--------KIVQAIPDKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHN 423
                     +  QA  D+          + ++  E DQ ++  + QL H    W L    
Sbjct: 66   PLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWNL---- 121

Query: 424  MEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPTDVLELSTKAMIASKRPVFLV 603
                                  +  I +E         PT+V+ L+ +A+ ASK   FL 
Sbjct: 122  ---------------------TDKLIDVE---------PTNVINLAKRALSASKHAAFLA 151

Query: 604  DQS-NISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXXDNFDYV 780
            D + ++ ++    S  FSL+E  +          +RS R L             D   + 
Sbjct: 152  DNNTDLDNLASTSSSSFSLEEVKI----------VRSRRHLARQSLNRRAPKTKDLI-FE 200

Query: 781  VPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKER 960
               S++ +         D ND L LFL GPETKQLLT KEE +L  QI+DLM LE VK R
Sbjct: 201  TYDSKSADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNR 260

Query: 961  LRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLD 1140
            L  Q  REPTL EWAQAVG+SCH L+  L SG  SR+K+I+ANLR+VVH+A++Y+ +GL 
Sbjct: 261  LESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLG 320

Query: 1141 LQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVL 1320
            LQDLLQEG+ GLMKS EKFKP AG RF TYAYWWIR +I KAIFQ+SRTIR+PEN + +L
Sbjct: 321  LQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLL 380

Query: 1321 KNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQ 1497
              +  A+R  IQEG H PT EE+A+RVGI +DKLE LL  TR P+S++   WSD + TFQ
Sbjct: 381  GKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQ 440

Query: 1498 EIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMY 1677
            EI AD  IE PD+++AKQ+MR H+  LL IL  KE+ II+L+FGI   ++KSLS+IG ++
Sbjct: 441  EITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVF 500

Query: 1678 GLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            GLSKER+RQ+ ++A         + GL+AY +LL
Sbjct: 501  GLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534


>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  396 bits (1018), Expect = e-107
 Identities = 249/600 (41%), Positives = 350/600 (58%), Gaps = 24/600 (4%)
 Frame = +1

Query: 52   ASSSALPMDA-FRLGLLSPSPSPVIPRTHLGSLGLNYVSIIFEQA--RKPNYNVSAVQVH 222
            +SSSA P     R  L S SPS  +   H             EQA     +  +++V  H
Sbjct: 9    SSSSAFPSTTHLRHPLPSSSPSTSVLMLH-------------EQAVPAVTSVPITSVARH 55

Query: 223  QYSTSLPSQQRDDFKT--------KIVQAIPDKVLATANREYSKEREKHEFDQCLKYLKR 378
              ++ L  +QRD+FK         K  +A  D++         ++ +  +F   +   K 
Sbjct: 56   FPTSVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKP 115

Query: 379  QLLHEHDLWYLFP--HNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPTDVL 552
            QLL+ HD+  +F       K S P+++E     +  + +N  + +E         P +V+
Sbjct: 116  QLLN-HDILDVFSSLQTGAKPSTPLTLE-----SLTTASNKHMDVE---------PCNVV 160

Query: 553  ELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXX 732
             L+ KA+ AS+    L + S     +FD   + SL    V+     ++ T+RS R+LE  
Sbjct: 161  ALAKKALSASREAASLAEDSQSMGADFDDLGYTSLANWIVE-----EEKTVRSTRILERR 215

Query: 733  XXXXXXXXXXDNFDYVVPSSRATNHXXXXXXXXD----------SNDRLSLFLKGPETKQ 882
                            VP S+   H        D           ND L LFL GPET+Q
Sbjct: 216  RKRIKTRK--------VPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQ 267

Query: 883  LLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRH 1062
            LLT KEE +L  +++DL +LE+VK RL+ Q  REPTL EWA+AVGISC  L+S L SG  
Sbjct: 268  LLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTS 327

Query: 1063 SRDKMISANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWW 1242
            SR+K+I ANLR+VVH+A+QY+G+GL LQDL+QEGS GLMKS EKFKP AG RF TYAYWW
Sbjct: 328  SREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWW 387

Query: 1243 IRHSIKKAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKL 1419
            IR +++KAIFQ+SRTIR+PEN +++L  +  A++ CIQEG H P  EE+A+RVGITV+KL
Sbjct: 388  IRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKL 447

Query: 1420 ESLLLNTRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPK 1599
            E LL  TR+P+S++   W+D D TFQE+ AD  +E PD+++AKQ+MR HV  LL IL  +
Sbjct: 448  EKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLR 507

Query: 1600 EKAIIQLQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            E+ II+L++GI   +++SLS+IG M+GLSKER+RQ+ ++A         +QGL AY  LL
Sbjct: 508  EREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLL 567


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  391 bits (1004), Expect = e-106
 Identities = 227/534 (42%), Positives = 319/534 (59%), Gaps = 9/534 (1%)
 Frame = +1

Query: 205  SAVQVHQYSTSLPSQQRDDFKT--------KIVQAIPDKVLATANREYSKEREKHEFDQC 360
            S+V  H  ++ L  +QRD+++         K  QA  D         + +E+   + DQ 
Sbjct: 45   SSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQL 104

Query: 361  LKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAP 540
            ++ L+ Q LH  DLW L P         VS+ +     S+S         DT  S    P
Sbjct: 105  VQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQ----SLSN--------DTEESVDAEP 152

Query: 541  TDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRL 720
             D + L+ KA+ ASK    L +   ++  EF      S    P++     +  T+RS + 
Sbjct: 153  FDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLE-----EVKTVRSTQF 207

Query: 721  LEXXXXXXXXXXXXDNFDYVVPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKE 900
            LE               ++   +SR  +         D ND L LFL GPET++LLT  E
Sbjct: 208  LERRSKKRKVSKPKVT-NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 266

Query: 901  EKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMI 1080
            E +L  QI+DL+RLE  K +L+ Q  REPTL EWA+A+G+SC  L+S L SG  SR+K+I
Sbjct: 267  EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 326

Query: 1081 SANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIK 1260
            +ANLRLVVHVA+QY+G+G+ L DLLQEGS GLMKS EKFKP AG RF +YAYWW+R +I+
Sbjct: 327  NANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 386

Query: 1261 KAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLN 1437
            KAIFQ+SRTIR+PEN + +L  +  A+RL IQEG H P  E++A+RVGITV+KLE L+  
Sbjct: 387  KAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446

Query: 1438 TRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQ 1617
            TR+P+S++   W+D D TFQEI AD  +E PD+++ KQ+MR HV +LL +L PKE+ I++
Sbjct: 447  TRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVR 506

Query: 1618 LQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            L+FGI   + KSLS++G ++GLSKER+RQ+ ++A          +    Y +LL
Sbjct: 507  LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLL 560


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  391 bits (1004), Expect = e-106
 Identities = 227/534 (42%), Positives = 319/534 (59%), Gaps = 9/534 (1%)
 Frame = +1

Query: 205  SAVQVHQYSTSLPSQQRDDFKT--------KIVQAIPDKVLATANREYSKEREKHEFDQC 360
            S+V  H  ++ L  +QRD+++         K  QA  D         + +E+   + DQ 
Sbjct: 53   SSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQL 112

Query: 361  LKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAP 540
            ++ L+ Q LH  DLW L P         VS+ +     S+S         DT  S    P
Sbjct: 113  VQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQ----SLSN--------DTEESVDAEP 160

Query: 541  TDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRL 720
             D + L+ KA+ ASK    L +   ++  EF      S    P++     +  T+RS + 
Sbjct: 161  FDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLE-----EVKTVRSTQF 215

Query: 721  LEXXXXXXXXXXXXDNFDYVVPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKE 900
            LE               ++   +SR  +         D ND L LFL GPET++LLT  E
Sbjct: 216  LERRSKKRKVSKPKVT-NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 274

Query: 901  EKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMI 1080
            E +L  QI+DL+RLE  K +L+ Q  REPTL EWA+A+G+SC  L+S L SG  SR+K+I
Sbjct: 275  EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 334

Query: 1081 SANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIK 1260
            +ANLRLVVHVA+QY+G+G+ L DLLQEGS GLMKS EKFKP AG RF +YAYWW+R +I+
Sbjct: 335  NANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 394

Query: 1261 KAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLN 1437
            KAIFQ+SRTIR+PEN + +L  +  A+RL IQEG H P  E++A+RVGITV+KLE L+  
Sbjct: 395  KAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454

Query: 1438 TRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQ 1617
            TR+P+S++   W+D D TFQEI AD  +E PD+++ KQ+MR HV +LL +L PKE+ I++
Sbjct: 455  TRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVR 514

Query: 1618 LQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            L+FGI   + KSLS++G ++GLSKER+RQ+ ++A          +    Y +LL
Sbjct: 515  LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLL 568


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  391 bits (1004), Expect = e-106
 Identities = 227/534 (42%), Positives = 319/534 (59%), Gaps = 9/534 (1%)
 Frame = +1

Query: 205  SAVQVHQYSTSLPSQQRDDFKT--------KIVQAIPDKVLATANREYSKEREKHEFDQC 360
            S+V  H  ++ L  +QRD+++         K  QA  D         + +E+   + DQ 
Sbjct: 54   SSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQL 113

Query: 361  LKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAP 540
            ++ L+ Q LH  DLW L P         VS+ +     S+S         DT  S    P
Sbjct: 114  VQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQ----SLSN--------DTEESVDAEP 161

Query: 541  TDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRL 720
             D + L+ KA+ ASK    L +   ++  EF      S    P++     +  T+RS + 
Sbjct: 162  FDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLE-----EVKTVRSTQF 216

Query: 721  LEXXXXXXXXXXXXDNFDYVVPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKE 900
            LE               ++   +SR  +         D ND L LFL GPET++LLT  E
Sbjct: 217  LERRSKKRKVSKPKVT-NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADE 275

Query: 901  EKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMI 1080
            E +L  QI+DL+RLE  K +L+ Q  REPTL EWA+A+G+SC  L+S L SG  SR+K+I
Sbjct: 276  EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 335

Query: 1081 SANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIK 1260
            +ANLRLVVHVA+QY+G+G+ L DLLQEGS GLMKS EKFKP AG RF +YAYWW+R +I+
Sbjct: 336  NANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 395

Query: 1261 KAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLN 1437
            KAIFQ+SRTIR+PEN + +L  +  A+RL IQEG H P  E++A+RVGITV+KLE L+  
Sbjct: 396  KAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 455

Query: 1438 TRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQ 1617
            TR+P+S++   W+D D TFQEI AD  +E PD+++ KQ+MR HV +LL +L PKE+ I++
Sbjct: 456  TRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVR 515

Query: 1618 LQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            L+FGI   + KSLS++G ++GLSKER+RQ+ ++A          +    Y +LL
Sbjct: 516  LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLL 569


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 554

 Score =  390 bits (1002), Expect = e-105
 Identities = 228/567 (40%), Positives = 336/567 (59%), Gaps = 9/567 (1%)
 Frame = +1

Query: 106  SPSPVIPRTHLGSLGLNYVSIIFEQARKP--NYNVSAVQVHQYSTSLPSQQRDDFKTKIV 279
            S SP  P +   S     V+++ EQA     +++ S+   H  ++ L  +QRD++K  + 
Sbjct: 3    SSSPPFPSSSSPS-----VTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLH 57

Query: 280  QAIPDKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEV 459
                +  L T   + +   EK            QL+H+      F   +   S   ++  
Sbjct: 58   VHNKETTLNTRQMDMTSVHEKGNTSNA-----DQLVHD------FVQQLHLRSHLQNLLT 106

Query: 460  DAKVTSISGNNNTIPIE-DTPHSGSGAPTDVLELSTKAMIASKRPVFLVDQSNISDIEFD 636
             +    I+ ++   P++ D+     G P + + L+ +A+ ASK+ V    +  + +I+ D
Sbjct: 107  CSPTRGIAASSILQPVDIDSEWPADGVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDD 166

Query: 637  KSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXX--DNFDYVVPSS---RAT 801
                  L    +  +   +   +RS R++E              D   Y+   S   R  
Sbjct: 167  DPLPSGLASTSLTDSSLKKNKVVRSTRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRL 226

Query: 802  NHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKR 981
                      D ND L LFL GPE++QLLT +EE  L TQ++DL RLE+VK RL+ Q +R
Sbjct: 227  RLEKKLKEGYDPNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRR 286

Query: 982  EPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDLLQE 1161
            EPTLAEWA AVG SC+ LQ+ L     S++K+  ANLR+VVH+A+ Y+G+GL LQDL QE
Sbjct: 287  EPTLAEWADAVGHSCYALQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQE 346

Query: 1162 GSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIKNAR 1341
            GS GLMKS EKFKP AG RF TYAYWWIRH+++KAIF +SRTIR+PEN + +L  +  A+
Sbjct: 347  GSTGLMKSIEKFKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAK 406

Query: 1342 RLCIQEGHL-PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVADPA 1518
            +  IQEG+L PT EE+A++VGIT++K+++LL  +R P+S++   W+D D TFQEI AD A
Sbjct: 407  KSYIQEGNLHPTKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSA 466

Query: 1519 IESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSKERI 1698
            IE PD+ ++KQ+MR+HVH+LL IL PKE+ II+L+FGI   E K+LS IG ++GL+KER+
Sbjct: 467  IEIPDVTVSKQLMRMHVHNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERV 526

Query: 1699 RQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            RQ+ ++A         +QGL+AY +LL
Sbjct: 527  RQLESRALLKLRQCLESQGLDAYTDLL 553


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  390 bits (1001), Expect = e-105
 Identities = 247/583 (42%), Positives = 339/583 (58%), Gaps = 14/583 (2%)
 Frame = +1

Query: 73   MDAFRLGLLSPSPSPVIPRTHL-GSLGL------NYVSIIFEQARKPNYNVSAVQV-HQY 228
            M+  R  L SP P P   RTH   SL        N+V ++ EQA     +     +   +
Sbjct: 1    METARTFLSSPPPFP--SRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNF 58

Query: 229  STS-LPSQQRDDFKTKIVQAIPDKVL-ATANREYSKEREKHEFDQCLKYLKRQLLHEHDL 402
             TS L  +QRD+F+  +     DK   AT + +        +   C   L + +LH +  
Sbjct: 59   PTSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDVLDQLILHSNLS 118

Query: 403  WYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPTDVLELSTKAMIAS 582
            W L                   + SI+ N + + + +        PT+V++L+ KA+ AS
Sbjct: 119  WSL------------------TMQSITTNTDELMVVE--------PTNVIDLARKALSAS 152

Query: 583  KRPVFLVDQ-SNISDIEFDKSHFFSLDERPVD-GTFTNQQV-TIRSGRLLEXXXXXXXXX 753
            K    L  + +N+ D         S    P D   F+ ++V T+RS R LE         
Sbjct: 153  KEAALLAQKCANLDDT-------VSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVT 205

Query: 754  XXXDNFDYVVPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDL 933
               + F +   SSR            D  D L LFL GPETKQLLT KEE +L  Q++DL
Sbjct: 206  KTKEIF-HEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDL 264

Query: 934  MRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVA 1113
            M LE+VKE+ +LQ  R+PTL EWA AVG+S   +QS L SG  SR+K+I+ANLR+VVH+A
Sbjct: 265  MSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIA 324

Query: 1114 RQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIR 1293
            +QY+G+GL LQDLLQEGS GLMKS EKFKP  G RF TYAYWWIR +++KAIFQ+SRTIR
Sbjct: 325  KQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIR 384

Query: 1294 IPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRP 1470
            +PEN +  L  +  A+R  I EG H PT EE+AKR+GIT  +LE LL   R+P+S++   
Sbjct: 385  LPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTV 444

Query: 1471 WSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERK 1650
            W+D + TFQEI AD  +E P+L +AKQ+MR HV SLL IL P+E+ II+L++GI   ++K
Sbjct: 445  WADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKK 504

Query: 1651 SLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            SLS+IG+++GLSKER+RQ+ ++A         + GLEAY +LL
Sbjct: 505  SLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYADLL 547


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  389 bits (999), Expect = e-105
 Identities = 222/497 (44%), Positives = 310/497 (62%), Gaps = 1/497 (0%)
 Frame = +1

Query: 292  DKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKV 471
            D+ L  A     +E +  + +Q +  L+ QLLH     Y FP    K   P+S     K 
Sbjct: 82   DRRLVEAASSELEENDAVDSEQNINALQVQLLHWPGPSYSFPPYYLKGKGPLSPN---KE 138

Query: 472  TSISGNNNTIPIEDTPHSGSGAPTDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFF 651
               S  +  +  E  PHS       V+ L+ KA++ASK    L + S +     D SHF 
Sbjct: 139  PLHSKGDKLMNFE--PHS-------VVALARKALLASKEAALLAEDSKL----LDDSHFP 185

Query: 652  SLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXXDNFDYVVPSSRATNHXXXXXXXX 831
            +     +      +Q T+RS R +E                     S   +         
Sbjct: 186  NFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRKVNESI 245

Query: 832  DSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQA 1011
            D ND L +FL GPETKQLLT KEE +L  +I+  M+L++VK +L++Q  REPT  EWA+A
Sbjct: 246  DLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSLEWAEA 305

Query: 1012 VGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFE 1191
             GI+   L+S L SG+ SR+K+I+ANLR+VVH+A+QY+G+GL+LQDLLQEGS GLMKS E
Sbjct: 306  AGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVE 365

Query: 1192 KFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEGHL- 1368
            KFKP AG RFPTYAYWWIR S++KAIFQ+SRTIR+PEN +A+L  +K+A+R CI++G+  
Sbjct: 366  KFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKRECIRQGNRH 425

Query: 1369 PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAK 1548
            PT E++A   G++V++L++LL N R P+S++   WSD D TFQEI AD AIE+P+L+++K
Sbjct: 426  PTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSK 485

Query: 1549 QMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXX 1728
            Q+MR H+  LL +L PKE+ II+L+FGI   + KSLS+IGA++GLSKER+RQ+  +A   
Sbjct: 486  QLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGAVFGLSKERVRQLETRALYK 545

Query: 1729 XXXXXXAQGLEAYLELL 1779
                    GL+AY +LL
Sbjct: 546  LKQNLNKHGLDAYSDLL 562


>ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Glycine max]
          Length = 554

 Score =  386 bits (991), Expect = e-104
 Identities = 230/567 (40%), Positives = 334/567 (58%), Gaps = 9/567 (1%)
 Frame = +1

Query: 106  SPSPVIPRTHLGSLGLNYVSIIFEQARKP--NYNVSAVQVHQYSTSLPSQQRDDFKTKIV 279
            S SP  P +   S     V+++ EQA     +++ S+   H  ++ L  +QRD++K  + 
Sbjct: 3    SSSPPFPSSSSPS-----VTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPLLH 57

Query: 280  QAIPDKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEV 459
                +  L T   + +   EK            QL+H+      F   +   S   ++  
Sbjct: 58   VHNKETTLNTRQMDMTSVHEKGNMSN-----GDQLVHD------FVQQLHLRSHLQNLLT 106

Query: 460  DAKVTSISGNNNTIPIE-DTPHSGSGAPTDVLELSTKAMIASKRPVFLVDQSNISDIEFD 636
             +    I+ ++   P++ D+     G P + + L+ +A+ ASK+ V    +  + +I+ D
Sbjct: 107  CSPTRGIAASSILQPVDIDSEWPADGLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDD 166

Query: 637  KSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXX--DNFDYVVPSS---RAT 801
                F L    +  +   +   +RS R++E              D   Y+   S   R  
Sbjct: 167  DPLPFGLASTSLANSSLKKNKVVRSTRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRL 226

Query: 802  NHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKR 981
                      D ND L LFL GPE++QLLT +EE  L TQ++DL R E+VK RL+ Q +R
Sbjct: 227  RLEKKLKEGYDQNDPLRLFLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRR 286

Query: 982  EPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDLLQE 1161
            EPTLAEWA AVG+SC+ LQ+ L     S++K+  ANLR+VVH+A+ Y+G+GL LQDL QE
Sbjct: 287  EPTLAEWADAVGLSCYTLQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQE 346

Query: 1162 GSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIKNAR 1341
            GS GLMKS +KFKP AG RF TYAYWWIRH+I+KAIF +SRTIR+PEN + +L  +  A+
Sbjct: 347  GSTGLMKSIQKFKPEAGCRFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAK 406

Query: 1342 RLCIQEGHL-PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVADPA 1518
            +  IQEG+L PT EE+A+RVGITV+KL++LL  +R P+S++   W D D TFQEI AD A
Sbjct: 407  KSYIQEGNLHPTKEELARRVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSA 466

Query: 1519 IESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSKERI 1698
            IE P + ++KQ+MR HVH+LL IL PKEK II+L+FGI   + K+LS IG ++GL+KER+
Sbjct: 467  IEIPGVTVSKQLMRRHVHNLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERV 526

Query: 1699 RQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            RQ+  +A         +QGL+AY++LL
Sbjct: 527  RQLECRALSKLKQCLESQGLDAYIDLL 553


>ref|XP_006577030.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Glycine max]
          Length = 477

 Score =  377 bits (969), Expect = e-102
 Identities = 203/429 (47%), Positives = 279/429 (65%), Gaps = 6/429 (1%)
 Frame = +1

Query: 511  DTPHSGSGAPTDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTN 690
            D+     G P + + L+ +A+ ASK+ V    +  + +I+ D    F L    +  +   
Sbjct: 48   DSEWPADGLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDDDPLPFGLASTSLANSSLK 107

Query: 691  QQVTIRSGRLLEXXXXXXXXXXXX--DNFDYVVPSS---RATNHXXXXXXXXDSNDRLSL 855
            +   +RS R++E              D   Y+   S   R            D ND L L
Sbjct: 108  KNKVVRSTRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRLRLEKKLKEGYDQNDPLRL 167

Query: 856  FLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGL 1035
            FL GPE++QLLT +EE  L TQ++DL R E+VK RL+ Q +REPTLAEWA AVG+SC+ L
Sbjct: 168  FLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLSCYTL 227

Query: 1036 QSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGS 1215
            Q+ L     S++K+  ANLR+VVH+A+ Y+G+GL LQDL QEGS GLMKS +KFKP AG 
Sbjct: 228  QTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIQKFKPEAGC 287

Query: 1216 RFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEGHL-PTNEEVAK 1392
            RF TYAYWWIRH+I+KAIF +SRTIR+PEN + +L  +  A++  IQEG+L PT EE+A+
Sbjct: 288  RFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQEGNLHPTKEELAR 347

Query: 1393 RVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVH 1572
            RVGITV+KL++LL  +R P+S++   W D D TFQEI AD AIE P + ++KQ+MR HVH
Sbjct: 348  RVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGVTVSKQLMRRHVH 407

Query: 1573 SLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQ 1752
            +LL IL PKEK II+L+FGI   + K+LS IG ++GL+KER+RQ+  +A         +Q
Sbjct: 408  NLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLECRALSKLKQCLESQ 467

Query: 1753 GLEAYLELL 1779
            GL+AY++LL
Sbjct: 468  GLDAYIDLL 476


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  377 bits (969), Expect = e-102
 Identities = 220/497 (44%), Positives = 307/497 (61%), Gaps = 1/497 (0%)
 Frame = +1

Query: 292  DKVLATANREYSKEREKHEFDQCLKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKV 471
            D+ L  A     +E +  + +Q +  L+ QLL      Y FP    K   P+S     K 
Sbjct: 82   DRRLVDAASSELEENDAVDSEQNINALQVQLLRCPGPSYSFPPYYLKGKGPLSPN---KE 138

Query: 472  TSISGNNNTIPIEDTPHSGSGAPTDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFF 651
               S  +  +  E  PHS       V+ L+ KA++AS+    L + S + D   D +   
Sbjct: 139  PLHSKGDKLMNFE--PHS-------VVALARKALLASREAALLAEDSKLLD---DSNFPN 186

Query: 652  SLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXXDNFDYVVPSSRATNHXXXXXXXX 831
             L    VD     Q+ T+RS R  E                    S R  +         
Sbjct: 187  FLSTNLVDDKLKEQR-TVRSTRFTERQSRKRGAPKPTQQVQETNRSGRP-DVRRKVNESI 244

Query: 832  DSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQA 1011
            D ND L +FL GPETKQLLT KEE +L  +I+  M+L++VK +L++Q   EPT  EWA+A
Sbjct: 245  DLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEA 304

Query: 1012 VGISCHGLQSCLSSGRHSRDKMISANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFE 1191
             GI+   L+S L SG+ SR+K+I+ANLR+VVH+A+QY+G+GL+LQDLLQEGS GLMKS E
Sbjct: 305  AGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVE 364

Query: 1192 KFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEGH-L 1368
            KFKP AG RFPTYAYWWIR S++KAIFQ+SRTIR+PEN +A+L  +K+A++ CIQ+G+  
Sbjct: 365  KFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRY 424

Query: 1369 PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAK 1548
            PT E++A   G++V++L++LL N R P+S++   WSD D TFQEI AD AIE+P+L+++K
Sbjct: 425  PTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSK 484

Query: 1549 QMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXX 1728
            Q+MR H+  LL +L PKE+ II+L+FGI   + KSLS+IG ++GLSKER+RQ+  +A   
Sbjct: 485  QLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLSKERVRQLETRALYK 544

Query: 1729 XXXXXXAQGLEAYLELL 1779
                    GL+AY +LL
Sbjct: 545  LKQNLNKHGLDAYSDLL 561


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  377 bits (969), Expect = e-102
 Identities = 238/586 (40%), Positives = 338/586 (57%), Gaps = 17/586 (2%)
 Frame = +1

Query: 73   MDAFRLGLLSPSPSPVIPRTHLGSLGLNYVS---IIFEQARKP---NYNVSAVQVHQYST 234
            M+A R  LLSP P+    RT L S   +  S   ++F +   P   +  +++V  H  ++
Sbjct: 1    MEAAR-NLLSPPPT-FSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTS 58

Query: 235  SLPSQQRDDFKT----------KIVQAIPDKVLATANREYSKEREKHEFDQCLKYLKRQL 384
             L  +QRDD++           K      DK         ++E   + F Q     +++L
Sbjct: 59   VLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQL--GFEKKL 116

Query: 385  LHEHDLWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPTDVLELST 564
            L   DL  L        SL     ++++    S +N      DT       P++++ L+ 
Sbjct: 117  LQWPDLTQLL-------SL-----LESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAK 164

Query: 565  KAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXX 744
            KA+ ASK+   L +   + D++   S+               + VT+RS R LE      
Sbjct: 165  KALSASKQAASLSEDLKL-DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRR 223

Query: 745  XXXXXXDNFDYVVPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKEEKDLFTQI 924
                     +    SSR T+         D ND L LFL GPETKQLLT KEE +L  Q+
Sbjct: 224  RVQPKVTIRETY--SSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQV 281

Query: 925  EDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVV 1104
            ++LMRLE VK +L+ Q  REPTL EWA+A+G+ C  LQ+ L SG  SRDK+I ANLR+VV
Sbjct: 282  QNLMRLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVV 341

Query: 1105 HVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSR 1284
            H+A+QY+ +GL LQDLLQEGS GLMKS E+FKP  G RF TYAYWWIR +I+K+I Q+SR
Sbjct: 342  HIAKQYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSR 401

Query: 1285 TIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIE 1461
            T+R+PEN   +L  + +A++  I+EG H P+ EE+A+RVGITV+KL+ LL  TR+P+S++
Sbjct: 402  TVRLPENVHTLLSKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQ 461

Query: 1462 GRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCD 1641
               W D D TFQE+  D  IE PD+++AKQ+MR HV +LL +L P+E+ II+L+FGI   
Sbjct: 462  QSVWVDQDITFQEVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEES 521

Query: 1642 ERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            +  SLS+IG M+GLSKER+RQ+ ++A           GL AY++LL
Sbjct: 522  KENSLSEIGNMFGLSKERVRQLESRALYKLKQCLNKHGLGAYVDLL 567


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  376 bits (965), Expect = e-101
 Identities = 235/582 (40%), Positives = 340/582 (58%), Gaps = 24/582 (4%)
 Frame = +1

Query: 106  SPSPVIPRTHL------GSLGLNYVSIIFEQARKP----NYNVSAVQVHQYSTSLPSQQR 255
            S  P  PRTH        S   + V ++ EQA       + N SA Q    S  LP +QR
Sbjct: 10   SSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSA-QNFPASVLLP-EQR 67

Query: 256  DDFKTKIVQAIPDK----VLATANRE---YSKEREKHEFDQCLKYLKRQLLHEHDLWYLF 414
            D+++  +  +  DK    +L+T   +     +E      DQ +   ++ L H  +L YL 
Sbjct: 68   DEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHHWPNLQYLL 127

Query: 415  PHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPTDVLELSTKAMIASKRPV 594
                       S ++     S +  + ++ +E  P+   G   + + L+ KA+  SK+  
Sbjct: 128  ----------TSSQIGEVAASSTLEHVSVDLERRPN---GVQFNGVSLAKKALSTSKQES 174

Query: 595  FLVDQSNISDIEFDKSHF-FSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXXXXXX--D 765
             +V+  ++  I+ D     F L    +      +  T+RS RLLE              D
Sbjct: 175  SVVE--DLKSIKADDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVID 232

Query: 766  NFDYVVPSSRATNHXXXXXXXX---DSNDRLSLFLKGPETKQLLTFKEEKDLFTQIEDLM 936
            +  Y+     A              D +D L LFL GPETKQLLT ++E  L +QI+DL+
Sbjct: 233  DETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLL 292

Query: 937  RLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVVHVAR 1116
            RLE+VK  L+ Q  REPT+AEWA+  G++C  LQS L SG  SR+K+I ANLR+VVHVA+
Sbjct: 293  RLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAK 352

Query: 1117 QYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSRTIRI 1296
             Y+G+GL LQDLLQEGS GLMKS EKF P AGSRF  YA+WWIR +I+KA+F++SRTIR+
Sbjct: 353  SYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRL 412

Query: 1297 PENAFAVLKNIKNARRLCIQEGHL-PTNEEVAKRVGITVDKLESLLLNTRIPVSIEGRPW 1473
            PE  F +L  +  A++L IQEG+L PT EE+A+RVG+TV+K++ LL + RIP+S++   W
Sbjct: 413  PEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVW 472

Query: 1474 SDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCDERKS 1653
            +D + TFQEI ADP +E+ D+ + KQ+MR HV ++L +L PKE+ II+L++G    E+KS
Sbjct: 473  ADQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKS 532

Query: 1654 LSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            LS+IG ++GLSKER+RQ+  +A          QGL+AY++LL
Sbjct: 533  LSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLL 574


>ref|XP_006293947.1| hypothetical protein CARUB_v10022939mg [Capsella rubella]
            gi|482562655|gb|EOA26845.1| hypothetical protein
            CARUB_v10022939mg [Capsella rubella]
          Length = 547

 Score =  376 bits (965), Expect = e-101
 Identities = 241/586 (41%), Positives = 341/586 (58%), Gaps = 17/586 (2%)
 Frame = +1

Query: 73   MDAFRLGLLSPSPSPVIPRTHLGSLGL-NYVSIIFEQARKP----NYNVSAVQVHQYSTS 237
            M+A R  L+S SPS    +THL +    + V ++ EQ   P    + +++++  H  ++ 
Sbjct: 1    MEATR-NLVSSSPS-FQTKTHLKNYSSPSLVVMLHEQTATPVVVNSRHLNSLSRHFPASV 58

Query: 238  LPSQQRDDFKTKIVQAIPDKVLATANREYSKEREKHEFDQCL-----KYLKRQLLHEHDL 402
            L  + R++ +       P       +R      E+ +FD+ +     +  ++QL+    L
Sbjct: 59   LSQEPREESR-------PLSHAFREDRTSQLTLERRQFDELVSSREDETFEQQLIQSAGL 111

Query: 403  WYLF--PHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPTDVLELSTKAMI 576
            W L   P   EK  LP +V                P+ D          DV+ L+ KA+ 
Sbjct: 112  WNLLISPITAEKQ-LPAAVS---------------PLADAELC------DVVALAQKALS 149

Query: 577  ASKRPVFLVD--QSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXXXXXXXX 750
            ASK+   L D  ++N SD   D     S    P +GT       +RS RLLE        
Sbjct: 150  ASKQAALLADDTEANPSDNSGDSLSTSSSMSLPEEGTI------VRSKRLLERRAKNRRA 203

Query: 751  XXXXD--NFDYVVPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKEEKDLFTQI 924
                D  N  YV   S A           D++D L LFL GPETKQLLT KEE +L + I
Sbjct: 204  PKSNDVDNEGYVPQKSNAKKKFKQGV---DTDDALQLFLWGPETKQLLTAKEEAELISHI 260

Query: 925  EDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANLRLVV 1104
            + L++LE VK +L  Q   EPT+ EWA+A+GIS   L+S +  GR SR+K+I+ANLRLVV
Sbjct: 261  QHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSEIHRGRSSREKLITANLRLVV 320

Query: 1105 HVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIFQNSR 1284
            H+A+QY+ +GL+ QDLLQEGS GLMKS EKFKP +G RF TYAYWWIR SI+K+IFQNSR
Sbjct: 321  HIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSR 380

Query: 1285 TIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIPVSIE 1461
            TIR+PEN + +L  +  AR+ C+QEG + P+ E++A  VG++ +KL+ LL NTR P+S++
Sbjct: 381  TIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSKEKLDKLLYNTRTPLSMQ 440

Query: 1462 GRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFGIHCD 1641
               WSD D TFQEI  D  IE P +++ KQ+MR HV +LL +L PKE++II+L+FGI   
Sbjct: 441  QPIWSDQDTTFQEITPDSGIEIPTISVGKQLMRNHVRNLLNVLSPKERSIIKLRFGIEGG 500

Query: 1642 ERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            +++SLS+IG +YGLSKER+RQ+ ++A         + GL AY +LL
Sbjct: 501  KQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMSSHGLHAYADLL 546


>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Cucumis sativus] gi|449482444|ref|XP_004156283.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic-like [Cucumis sativus]
          Length = 562

 Score =  375 bits (962), Expect = e-101
 Identities = 236/591 (39%), Positives = 338/591 (57%), Gaps = 26/591 (4%)
 Frame = +1

Query: 88   LGLLSPSPSPVIPRTHLGSLGLNYVSIIFEQARKPNYNVSAVQVHQYSTSLPSQQRDDFK 267
            L LLS S SP I R H  S    +++     A  P+ + S+  V+ +             
Sbjct: 5    LNLLSSS-SPFISRCHPRS----FLAPSCSSAASPSSSSSSSSVYMFPE----------- 48

Query: 268  TKIVQAIPDKVLATANREYSKEREKHEFDQCLK-------YLKRQLL------------- 387
                QA P +  +T+     +  E     Q LK        L+R+L+             
Sbjct: 49   ----QASPARYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIERSVPIDEGSRDD 104

Query: 388  HEHDLWYLFPHNMEKHSL-----PVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAPTDVL 552
            H+H +W L    +E   L     PV +E + K++SI   +     E         P +V+
Sbjct: 105  HDHLIWELKHQAVEWPGLLSSWPPVQME-EYKISSIEKESYNAAGEMLVKD---EPENVI 160

Query: 553  ELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRLLEXX 732
             L+ KA+ ASK+   LVD++ +           SLD   +D + + +  T+RS RL +  
Sbjct: 161  ALAKKALSASKQAALLVDETELVGT--------SLDYSSLDDSLSKEGRTVRSTRLQDRR 212

Query: 733  XXXXXXXXXXDNFDYVVPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKEEKDL 912
                         D +  + R  +         D ND L LFL GPETK+LLT +EE +L
Sbjct: 213  SKKRKVPKHVTTIDEI-SNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESEL 271

Query: 913  FTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMISANL 1092
              QI+DLM L++VK RL+ Q  REPTL EWA+A+GI+C  LQS L   + SR+K+I+ANL
Sbjct: 272  IVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANL 331

Query: 1093 RLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIKKAIF 1272
            R+VVH+A+QY+G+GL L DLLQ GS GLMKS EKFKP AG RF +YAYWWIRHSI KAIF
Sbjct: 332  RMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIF 391

Query: 1273 QNSRTIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLNTRIP 1449
            Q+SRTIR+PEN +A+L  +  A+   ++ G + P+ EE+A RVGITV++ + L+  +RIP
Sbjct: 392  QHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIP 451

Query: 1450 VSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQLQFG 1629
             S++   W+D + TFQEI AD  +++PD+++ +++MR H+ +LL IL PKE+ II+L+FG
Sbjct: 452  RSLQQPVWADQETTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFG 511

Query: 1630 IHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELLT 1782
            I     K+L +IG M+GLSKER+RQ+ N+A         +QGL AY +LLT
Sbjct: 512  IEDGREKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT 562


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  374 bits (961), Expect = e-101
 Identities = 223/534 (41%), Positives = 312/534 (58%), Gaps = 9/534 (1%)
 Frame = +1

Query: 205  SAVQVHQYSTSLPSQQRDDFKT--------KIVQAIPDKVLATANREYSKEREKHEFDQC 360
            S+V  H  ++ L  +QRD+++         K  QA  D         + +E+   + DQ 
Sbjct: 45   SSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQL 104

Query: 361  LKYLKRQLLHEHDLWYLFPHNMEKHSLPVSVEVDAKVTSISGNNNTIPIEDTPHSGSGAP 540
            ++ L+ Q LH  DLW L P         VS+ +     S+S         DT  S    P
Sbjct: 105  VQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQ----SLSN--------DTEESVDAEP 152

Query: 541  TDVLELSTKAMIASKRPVFLVDQSNISDIEFDKSHFFSLDERPVDGTFTNQQVTIRSGRL 720
             D + L+ KA+ ASK    L +   ++  EF      S    P++     +  T+RS R 
Sbjct: 153  FDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLGYPLE-----EVKTVRSTRF 207

Query: 721  LEXXXXXXXXXXXXDNFDYVVPSSRATNHXXXXXXXXDSNDRLSLFLKGPETKQLLTFKE 900
            LE               ++   +SR  +         D ND L LFL GPET++LLT  E
Sbjct: 208  LERRSKKRKVSKPKVT-NHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADE 266

Query: 901  EKDLFTQIEDLMRLEDVKERLRLQTKREPTLAEWAQAVGISCHGLQSCLSSGRHSRDKMI 1080
            E +L  QI+DL+RLE  K +L+ Q  REPTL        +SC  L+S L SG  SR+K+I
Sbjct: 267  EFELIAQIQDLIRLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLI 326

Query: 1081 SANLRLVVHVARQYEGKGLDLQDLLQEGSKGLMKSFEKFKPGAGSRFPTYAYWWIRHSIK 1260
            +ANLRLVVHVA+QY+G+G+ L DLLQEGS GLMKS EKFKP AG RF +YAYWW+R +I+
Sbjct: 327  NANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 386

Query: 1261 KAIFQNSRTIRIPENAFAVLKNIKNARRLCIQEG-HLPTNEEVAKRVGITVDKLESLLLN 1437
            KAIFQ+SRTIR+PEN + +L  +  A+RL IQEG H P  E++A+RVGITV+KLE L+  
Sbjct: 387  KAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 446

Query: 1438 TRIPVSIEGRPWSDHDATFQEIVADPAIESPDLAIAKQMMRLHVHSLLKILKPKEKAIIQ 1617
            TR+P+S++   W+D D TFQEI AD  +E PD+++ KQ+MR HV +LL +L PKE+ I++
Sbjct: 447  TRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVR 506

Query: 1618 LQFGIHCDERKSLSQIGAMYGLSKERIRQIGNQAXXXXXXXXXAQGLEAYLELL 1779
            L+FGI   + KSLS++G ++GLSKER+RQ+ ++A          +    Y +LL
Sbjct: 507  LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLL 560