BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00000781
         (1634 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY18774.1| Pseudouridine synthase family protein isoform 2, ...   454   e-125
gb|EOY18773.1| Pseudouridine synthase family protein isoform 1 [...   448   e-123
ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   445   e-122
gb|EMJ19261.1| hypothetical protein PRUPE_ppa006826mg [Prunus pe...   444   e-122
ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutr...   438   e-120
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   438   e-120
ref|XP_002468490.1| hypothetical protein SORBIDRAFT_01g046770 [S...   437   e-120
ref|XP_004496237.1| PREDICTED: uncharacterized RNA pseudouridine...   436   e-119
ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Popu...   435   e-119
ref|XP_004985662.1| PREDICTED: uncharacterized protein LOC101780...   434   e-119
gb|ESW15747.1| hypothetical protein PHAVU_007G098900g [Phaseolus...   434   e-119
ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601...   433   e-118
gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabi...   432   e-118
ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619...   432   e-118
ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citr...   432   e-118
ref|XP_003558788.1| PREDICTED: ribosomal large subunit pseudouri...   432   e-118
ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine...   432   e-118
gb|AFK43008.1| unknown [Medicago truncatula]                          430   e-118
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   430   e-118
ref|NP_001152020.1| LOC100285657 [Zea mays] gi|195651911|gb|ACG4...   429   e-117

>gb|EOY18774.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao]
          Length = 398

 Score =  454 bits (1169), Expect = e-125
 Identities = 230/365 (63%), Positives = 277/365 (75%), Gaps = 6/365 (1%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMP----MLIPWIVRGEDGQFTIQSS 1310
            +FNI+F A P+P +    P  L  D     S + P+P    + IPWIVRGEDG   +Q+ 
Sbjct: 29   QFNITF-APPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGNLKLQAH 87

Query: 1309 PPARFLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVT-SASPPKYSKAARRFYNQHIKQKS 1133
            PPAR +                        ++++   S  PPK SKAARRFYN++  +  
Sbjct: 88   PPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNENFTEPP 147

Query: 1132 QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLP 953
            QRLSKVLAA+GVASRR  EE+IF+GKVTVNGSVC +PQTRVD AKD IYVNG+RL KKLP
Sbjct: 148  QRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSRLPKKLP 207

Query: 952  PKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 776
            PK+Y ALNKPKGYICSS + + KSV+ LF+D+LK+W K N G PKPRLFTVGRLDVATTG
Sbjct: 208  PKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVATTG 267

Query: 775  LIIVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELL 596
            LIIVTNDGDF QK+SHPSS L KEYIATI+G+V +RHL+ ISEG ++EG+HC+PDSVELL
Sbjct: 268  LIIVTNDGDFAQKLSHPSSNLNKEYIATIDGEVKKRHLIAISEGTEIEGIHCIPDSVELL 327

Query: 595  SAQPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELK 416
              QPD SRPR+R+VVHEGRNHEVRELV+NAGL+++SLKRVRIGGF LP+DLGLGK+VELK
Sbjct: 328  PRQPDLSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPADLGLGKHVELK 387

Query: 415  QSDFK 401
            QSD +
Sbjct: 388  QSDLR 392


>gb|EOY18773.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 453

 Score =  448 bits (1152), Expect = e-123
 Identities = 230/371 (61%), Positives = 277/371 (74%), Gaps = 12/371 (3%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMP----MLIPWIVRGEDGQFTIQSS 1310
            +FNI+F A P+P +    P  L  D     S + P+P    + IPWIVRGEDG   +Q+ 
Sbjct: 78   QFNITF-APPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGNLKLQAH 136

Query: 1309 PPARFLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVT-SASPPKYSKAARRFYNQHIKQKS 1133
            PPAR +                        ++++   S  PPK SKAARRFYN++  +  
Sbjct: 137  PPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNENFTEPP 196

Query: 1132 QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQ------TRVDIAKDSIYVNGNR 971
            QRLSKVLAA+GVASRR  EE+IF+GKVTVNGSVC +PQ      TRVD AKD IYVNG+R
Sbjct: 197  QRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQASDNLQTRVDPAKDIIYVNGSR 256

Query: 970  LSKKLPPKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRL 794
            L KKLPPK+Y ALNKPKGYICSS + + KSV+ LF+D+LK+W K N G PKPRLFTVGRL
Sbjct: 257  LPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRL 316

Query: 793  DVATTGLIIVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVP 614
            DVATTGLIIVTNDGDF QK+SHPSS L KEYIATI+G+V +RHL+ ISEG ++EG+HC+P
Sbjct: 317  DVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIATIDGEVKKRHLIAISEGTEIEGIHCIP 376

Query: 613  DSVELLSAQPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLG 434
            DSVELL  QPD SRPR+R+VVHEGRNHEVRELV+NAGL+++SLKRVRIGGF LP+DLGLG
Sbjct: 377  DSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPADLGLG 436

Query: 433  KYVELKQSDFK 401
            K+VELKQSD +
Sbjct: 437  KHVELKQSDLR 447


>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  445 bits (1144), Expect = e-122
 Identities = 239/410 (58%), Positives = 290/410 (70%), Gaps = 2/410 (0%)
 Frame = -2

Query: 1624 SSMAGAAMAFAVFH-PRPSLLCTGPLLPFQAXXXXXXXXXXXXXXXXXXAEFNISFGASP 1448
            +++A A+ AF+ FH  RPSL         +                   AEFNISF    
Sbjct: 10   AAVAAASAAFSSFHLSRPSLA--------RRHFRTIPVRSSISPPSTTSAEFNISF---- 57

Query: 1447 SPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPARFLQXXXXXXX 1268
            +P     +P++                +LIPWIVR E+G   +QS+PP R+LQ       
Sbjct: 58   APKSKNPKPQSET--------------LLIPWIVRDENGNLRVQSTPPERYLQDMAKAKA 103

Query: 1267 XXXXXXXXXXXNSPGAMTSIVTSASPPKYSKAARRFYNQHIKQKSQRLSKVLAASGVASR 1088
                       ++  A+      A  PKYSKAARRFYN++ +   QRLSKVLAA+GVASR
Sbjct: 104  LSAKKKKKKEESTARAV------AVEPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASR 157

Query: 1087 RNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLYFALNKPKGYIC 908
            RN EE+IFEG+VTVNGSVC +PQTRVD A+D IYVNGNRL KKLPPK+Y ALNKPKGYIC
Sbjct: 158  RNSEELIFEGRVTVNGSVCNTPQTRVDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYIC 217

Query: 907  SSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTGLIIVTNDGDFTQKIS 731
            SS + +SKSV+ LFDD+LK W K NPG+PKPR+FTVGRLDVATTGLII+TNDGDF QK+S
Sbjct: 218  SSGEKESKSVLCLFDDYLKSWNKQNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLS 277

Query: 730  HPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELLSAQPDASRPRIRLVV 551
            HPSS+L+KEYIATI+G VN+RHL+ ISEG  +EGVHC PDSVELL  QP+ S+PR+R+VV
Sbjct: 278  HPSSKLSKEYIATIDGVVNKRHLIAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVV 337

Query: 550  HEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELKQSDFK 401
            HEGRNHEVRELV++AGLQ++SLKR+RIGGF LPSDLG GK+VELKQ D K
Sbjct: 338  HEGRNHEVRELVKSAGLQIHSLKRIRIGGFRLPSDLGHGKHVELKQGDLK 387


>gb|EMJ19261.1| hypothetical protein PRUPE_ppa006826mg [Prunus persica]
          Length = 393

 Score =  444 bits (1142), Expect = e-122
 Identities = 231/358 (64%), Positives = 272/358 (75%), Gaps = 1/358 (0%)
 Frame = -2

Query: 1477 EFNISFGAS-PSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPA 1301
            EFNI+F  S P P         L PD++          ++IPWIVRGEDG   +QS PPA
Sbjct: 47   EFNITFAPSKPKP--------KLKPDSAEPDPEALAGQLIIPWIVRGEDGNLKLQSHPPA 98

Query: 1300 RFLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVTSASPPKYSKAARRFYNQHIKQKSQRLS 1121
            RFLQ                     GA   + T+   PKYSKAARRFYN++ +  SQRLS
Sbjct: 99   RFLQAIETKSKTKKK--------KEGAEKRVPTAE--PKYSKAARRFYNENFRDASQRLS 148

Query: 1120 KVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLY 941
            KVLAA+GVASRR+ E++IF+GKVTVNGSVC +PQ+RVD  +D IYVNGNRL K+LPPK+Y
Sbjct: 149  KVLAAAGVASRRSSEQLIFDGKVTVNGSVCNTPQSRVDPGRDIIYVNGNRLPKRLPPKVY 208

Query: 940  FALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTGLIIVT 761
             ALNKPKGYIC+S ++ KSV+SLF+D+LK W K N GIP+PRLFTVGRLDVATTGLIIVT
Sbjct: 209  LALNKPKGYICASGEN-KSVLSLFEDYLKTWDKRNSGIPRPRLFTVGRLDVATTGLIIVT 267

Query: 760  NDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELLSAQPD 581
            NDGDF QKISHPSS L+KEYIA IEG V++RHL+ ISEG  +EGVHC PDSVELL  QPD
Sbjct: 268  NDGDFAQKISHPSSNLSKEYIAAIEGVVSKRHLLAISEGTVIEGVHCTPDSVELLPQQPD 327

Query: 580  ASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELKQSD 407
             SRPR+R+VVHEGRNHEVRELV+NAGL+++SLKRVRIGGF LPSDLGLGK++ LKQ D
Sbjct: 328  MSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHMALKQGD 385


>ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutrema salsugineum]
            gi|557112308|gb|ESQ52592.1| hypothetical protein
            EUTSA_v10016747mg [Eutrema salsugineum]
          Length = 403

 Score =  438 bits (1127), Expect = e-120
 Identities = 225/342 (65%), Positives = 259/342 (75%), Gaps = 6/342 (1%)
 Frame = -2

Query: 1408 PDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPARFLQXXXXXXXXXXXXXXXXXXNS 1229
            P  S T        + IPWIVRGEDG+  +QS PPAR +                     
Sbjct: 57   PTPSSTRGGAGVQQLFIPWIVRGEDGKLKVQSQPPARLIHALADATTQNPKKKDKSKKKK 116

Query: 1228 PGAMTSIVTSASP-----PKYSKAARRFYNQHIKQKSQRLSKVLAASGVASRRNCEEIIF 1064
            P + TS  T +SP     PK SKAARRFYN++ K   QRLSKVLAA+GVASRR  EE+IF
Sbjct: 117  PQS-TSASTPSSPASHSKPKLSKAARRFYNENFKDPPQRLSKVLAAAGVASRRTSEELIF 175

Query: 1063 EGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLYFALNKPKGYICSSAD-DSK 887
            +GKVTVNGS+CT+PQ RVD  +D IYVNGNR+ KKLPPK+YFALNKPKGYICSS + + K
Sbjct: 176  DGKVTVNGSLCTAPQIRVDPTRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVK 235

Query: 886  SVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTGLIIVTNDGDFTQKISHPSSELTK 707
            SVISLFDDFL  W K NPG PKPRLFTVGRLDVATTGLI+VTNDGDF QK+SHPSS L K
Sbjct: 236  SVISLFDDFLASWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPK 295

Query: 706  EYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELLSAQPDASRPRIRLVVHEGRNHEV 527
            EYI T+ G V++RHL+TISEG  VEGVHCVPDSVEL+  Q D  R R+R+VVHEGRNHEV
Sbjct: 296  EYITTVVGDVHKRHLMTISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEV 355

Query: 526  RELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELKQSDFK 401
            RE+V+NAGL+++SLKRVRIGGF LPSDLGLGK+VELKQS+ K
Sbjct: 356  REIVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELK 397


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  438 bits (1127), Expect = e-120
 Identities = 232/360 (64%), Positives = 271/360 (75%), Gaps = 1/360 (0%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPAR 1298
            EFNI+F A P P     +P++ V D       N+   + IPWIVRGEDG   +QS PP R
Sbjct: 49   EFNITF-APPKP-----KPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTR 102

Query: 1297 FLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVTSASPPKYSKAARRFYNQHIKQKSQRLSK 1118
            FL                    S G   +      PPK+SKAARRFYN++I++ SQRLSK
Sbjct: 103  FLHSVSEDETKPKKKKV-----SAGKPIT-----EPPKHSKAARRFYNENIRESSQRLSK 152

Query: 1117 VLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLYF 938
            VLAA+GVASRR+ EE+IF G+VTVNGSVC +PQTRVD A+D IYVNGNRL KKLPPK+Y 
Sbjct: 153  VLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYL 212

Query: 937  ALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTGLIIVT 761
            ALNKPKGYICSS   +SKSVISLFDD+LK W K+ PG PKPRLFTVGRLDVATTGLIIVT
Sbjct: 213  ALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVT 272

Query: 760  NDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELLSAQPD 581
            NDGDF Q ISHPSS L+KEYIA I+G V++++L+ ISEG  ++GVHC PDSVELL  QPD
Sbjct: 273  NDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPD 332

Query: 580  ASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELKQSDFK 401
             S+ R+R+VVHEGRNHEVRELV+ AGL++YSLKRVRIGGF LPSDLGLG Y ELKQS+ K
Sbjct: 333  ISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELK 392


>ref|XP_002468490.1| hypothetical protein SORBIDRAFT_01g046770 [Sorghum bicolor]
            gi|241922344|gb|EER95488.1| hypothetical protein
            SORBIDRAFT_01g046770 [Sorghum bicolor]
          Length = 407

 Score =  437 bits (1123), Expect = e-120
 Identities = 223/377 (59%), Positives = 281/377 (74%), Gaps = 16/377 (4%)
 Frame = -2

Query: 1465 SFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPARFLQX 1286
            S  ASP   +  AEP       +P+  + +  P L+PWIVRGEDG+  + +SPP   LQ 
Sbjct: 39   STSASPDFNITFAEP-------APSKKAPSAQP-LVPWIVRGEDGKPRLSTSPPPDVLQA 90

Query: 1285 XXXXXXXXXXXXXXXXXNSP-GAMTSIVTSAS--------------PPKYSKAARRFYNQ 1151
                               P GA+ +   +A+              PPK+SKAARRFYN+
Sbjct: 91   IALAEAEAKKAAKKETLKGPKGAVAAAAAAAASNASVKARKAAPTAPPKFSKAARRFYNE 150

Query: 1150 HIKQKS-QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGN 974
            +IK++  QRL+KVLAA+GVASRR  EE+IF+GKVTVNGSVCTSPQT+VDI+KDSIYVNGN
Sbjct: 151  NIKEREPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTSPQTKVDISKDSIYVNGN 210

Query: 973  RLSKKLPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRL 794
            R+SKKLPPKLYFA+NKPKGYICS  +DSKSV+SLF+D+LK W K  PG+PKPRLFTVGRL
Sbjct: 211  RISKKLPPKLYFAVNKPKGYICSCGEDSKSVVSLFNDYLKGWNKIQPGLPKPRLFTVGRL 270

Query: 793  DVATTGLIIVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVP 614
            DVAT+GLIIVTNDG+F QK++HPSS +TKEY+ TI+G V+++HL+ ISEG +++G+ C+P
Sbjct: 271  DVATSGLIIVTNDGEFAQKLAHPSSNVTKEYVVTIDGAVHKKHLIAISEGTKIDGIMCIP 330

Query: 613  DSVELLSAQPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLG 434
            D VE L AQ D  + R+++VVHEGRNHEVRELV+NAGLQ+Y+LKRVRIG F LP+DLG+G
Sbjct: 331  DLVESLDAQSDTRKTRLKIVVHEGRNHEVRELVQNAGLQVYALKRVRIGRFRLPADLGIG 390

Query: 433  KYVELKQSDFKLFEVKK 383
            K+VELKQ+D K  E  K
Sbjct: 391  KFVELKQADIKALEGNK 407


>ref|XP_004496237.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cicer arietinum]
          Length = 410

 Score =  436 bits (1121), Expect = e-119
 Identities = 221/362 (61%), Positives = 267/362 (73%), Gaps = 3/362 (0%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPAR 1298
            +FNISF  S      + EP+T  P+  P  +      ++IPWIVRGEDG F + S PP  
Sbjct: 40   KFNISFSPSKPKPNPKPEPQTESPNQFPDDNEGQ---LIIPWIVRGEDGNFKLLSEPPPS 96

Query: 1297 FLQXXXXXXXXXXXXXXXXXXNSP--GAMTSIVTSASPPKYSKAARRFYNQHIKQKSQRL 1124
            FL+                   +       + V + +PP+YSKAARRFYN++ K    RL
Sbjct: 97   FLKAMANDKTGTKKSDKNQTTKNKKKSENETKVRATAPPQYSKAARRFYNENFKDSGTRL 156

Query: 1123 SKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKL 944
            SKVLAASGVASRR+CE++IFEGKVTVNGSVC +PQTRVD AKD IYVNG+RL K+ P K+
Sbjct: 157  SKVLAASGVASRRSCEDLIFEGKVTVNGSVCNTPQTRVDPAKDVIYVNGSRLPKRQPHKV 216

Query: 943  YFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTGLII 767
            Y ALNKPKGYICSS + +SKSV+SLFDDFL  W K +PG+P PRLFTVGRLDVATTGL+I
Sbjct: 217  YLALNKPKGYICSSGEKESKSVLSLFDDFLSSWDKKHPGVPMPRLFTVGRLDVATTGLLI 276

Query: 766  VTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELLSAQ 587
            VTNDGDF Q++SHPSS  +KEYIAT+ G V++RHL  ISEG  +EGVHCVPDSVELL + 
Sbjct: 277  VTNDGDFAQRLSHPSSNFSKEYIATVNGLVHKRHLTAISEGTTIEGVHCVPDSVELLPSM 336

Query: 586  PDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELKQSD 407
            PDA R R+R+VVH+GR HEVRELV+NAGL+++SLKRVRIGGF LP DLGLGKY+EL  + 
Sbjct: 337  PDAQRARLRIVVHDGRKHEVRELVKNAGLEIHSLKRVRIGGFRLPPDLGLGKYIELNPTK 396

Query: 406  FK 401
             K
Sbjct: 397  LK 398


>ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Populus trichocarpa]
            gi|550332354|gb|EEE89362.2| hypothetical protein
            POPTR_0008s03540g [Populus trichocarpa]
          Length = 397

 Score =  435 bits (1118), Expect = e-119
 Identities = 223/363 (61%), Positives = 274/363 (75%), Gaps = 4/363 (1%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMP---MLIPWIVRGEDGQFTIQSSP 1307
            EFNI+F A P       +P+  +P    T +++  +P   + IPWIVRGEDG   +QS+P
Sbjct: 39   EFNITF-APP-------KPKPKLPANLQTDAASLSLPPGQLFIPWIVRGEDGNLKLQSNP 90

Query: 1306 PARFLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVTSASPPKYSKAARRFYNQHIKQKSQR 1127
            PAR +                    S G + + + +   P  SKAARRFYN++ + ++QR
Sbjct: 91   PARLIHAIADAKTQPKKKKDKVKKESSGNVKAKLEAE--PTRSKAARRFYNENFRDQAQR 148

Query: 1126 LSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPK 947
            LSKVLAA+GVASRR+ E +IFEGKVTVNGSVC +PQTRVD  +D+IYVNGNRL KKLPPK
Sbjct: 149  LSKVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDAIYVNGNRLPKKLPPK 208

Query: 946  LYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTGLI 770
            +Y ALNKPKGYICS  + +SKSV+ L DD+ + W K NPG+PKPRLFTVGRLDVATTGLI
Sbjct: 209  IYIALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLI 268

Query: 769  IVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELLSA 590
            IVTNDGDF Q+I+HPSS L+KEYIAT++G V++RHL  +SEG  +EGV CVPDSVELL  
Sbjct: 269  IVTNDGDFAQQIAHPSSNLSKEYIATVDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQ 328

Query: 589  QPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELKQS 410
            QPD  RPR+R+VVHEGRNHEVRELV+NAGL+++SLKRVRIGGF LPSDLGLGK+ ELKQ+
Sbjct: 329  QPDRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQT 388

Query: 409  DFK 401
            D K
Sbjct: 389  DLK 391


>ref|XP_004985662.1| PREDICTED: uncharacterized protein LOC101780537 [Setaria italica]
          Length = 415

 Score =  434 bits (1117), Expect = e-119
 Identities = 222/374 (59%), Positives = 279/374 (74%), Gaps = 16/374 (4%)
 Frame = -2

Query: 1465 SFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPARFLQ- 1289
            S  ++P   +  AEP      +SP+ S+      L+PWIVRGEDG+  + +SPP   LQ 
Sbjct: 43   STSSAPDFNITFAEPAPAKKASSPSPSAQP----LVPWIVRGEDGKPRLSTSPPPEVLQA 98

Query: 1288 XXXXXXXXXXXXXXXXXXNSPGAMTSIVTS--------------ASPPKYSKAARRFYNQ 1151
                                 GA+ +   +              A+PPK+SKAARRFYN+
Sbjct: 99   IALAEAEAKKAAKKESLKGQKGAVAAAAAASSASVKAKERKAAPAAPPKFSKAARRFYNE 158

Query: 1150 HIK-QKSQRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGN 974
            +IK  + QRL+KVLAA+GVASRR  EE+IF+GKVTVNGSVCTSPQT+VDIAKDSIYVNGN
Sbjct: 159  NIKDHEPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTSPQTKVDIAKDSIYVNGN 218

Query: 973  RLSKKLPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRL 794
            R+SKKLPPKLYFA+NKPKGYICS  ++SKSV+SLF+D+LK W K  PG+PKPRLFTVGRL
Sbjct: 219  RISKKLPPKLYFAVNKPKGYICSCGEESKSVVSLFNDYLKGWNKIQPGLPKPRLFTVGRL 278

Query: 793  DVATTGLIIVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVP 614
            DVATTGLIIVTNDG+F QK++HPSS +TKEY+ TI+G V+++HL+ ISEG +++GV CVP
Sbjct: 279  DVATTGLIIVTNDGEFAQKLAHPSSNVTKEYVVTIDGAVHKKHLIAISEGTKIDGVMCVP 338

Query: 613  DSVELLSAQPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLG 434
            D VE LSAQ D  + R+++VVHEGRNHEVRELV+NAGL++Y+LKRVR+G F LP+DLG+G
Sbjct: 339  DLVEPLSAQSDTRKTRLKIVVHEGRNHEVRELVQNAGLKVYALKRVRVGRFRLPADLGIG 398

Query: 433  KYVELKQSDFKLFE 392
            K+VELKQ+D K  E
Sbjct: 399  KFVELKQADIKALE 412


>gb|ESW15747.1| hypothetical protein PHAVU_007G098900g [Phaseolus vulgaris]
          Length = 403

 Score =  434 bits (1116), Expect = e-119
 Identities = 228/359 (63%), Positives = 267/359 (74%), Gaps = 3/359 (0%)
 Frame = -2

Query: 1474 FNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPARF 1295
            FNISF A P P   + +P  L P   P  S+    P+LIPWIVRGEDG   +QS PP   
Sbjct: 43   FNISF-APPKP---KPKPNNLHPH--PDLSNEPDGPLLIPWIVRGEDGNLKLQSEPPPSL 96

Query: 1294 LQXXXXXXXXXXXXXXXXXXNSPGAMT-SIVTSASPPKYSKAARRFYNQHIKQKS-QRLS 1121
            L                    +        + + +PP++SKAARRFYNQ+IK+ S  RLS
Sbjct: 97   LNAIATAQTGTRKDSNQKTKTTAATTKPQKIRATAPPQHSKAARRFYNQNIKESSGARLS 156

Query: 1120 KVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLY 941
            KVLAASGVASRR+CEE+IFEGKVTVNGSVC +PQTRVD AKD IYVNGNRL K+ P K+Y
Sbjct: 157  KVLAASGVASRRSCEELIFEGKVTVNGSVCNTPQTRVDPAKDVIYVNGNRLPKRQPQKVY 216

Query: 940  FALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTGLIIV 764
             ALNKPKGYICSS + +SKSVISLFDDFL  W K  PG+P PRLFTVGRLDVATTGLIIV
Sbjct: 217  LALNKPKGYICSSGENESKSVISLFDDFLNTWGKKRPGVPTPRLFTVGRLDVATTGLIIV 276

Query: 763  TNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELLSAQP 584
            TNDGDF QK+SHPSS L+KEYIAT++G V +RHL+ ISEG  +EGVHCVPD+VE+L  Q 
Sbjct: 277  TNDGDFAQKLSHPSSNLSKEYIATVDGLVYKRHLMAISEGTTIEGVHCVPDAVEILPRQA 336

Query: 583  DASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELKQSD 407
            D  R RIR+VVHEGR HEVRELV+NAGL+++SLKR+RIGGF LP DLGLGKY+EL  ++
Sbjct: 337  DMQRARIRIVVHEGRKHEVRELVKNAGLEIHSLKRIRIGGFRLPPDLGLGKYIELNPTN 395


>ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601559 [Solanum tuberosum]
          Length = 413

 Score =  433 bits (1113), Expect = e-118
 Identities = 224/369 (60%), Positives = 276/369 (74%), Gaps = 10/369 (2%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMPML---------IPWIVRGEDGQF 1325
            +FNI+F A P P   + +P   +P  S + S +  +P L         IPWIVR E G  
Sbjct: 45   KFNITF-APPKPKP-KPKPEPAIPINSDSDSDSNSVPNLEAEIGDQLYIPWIVRDEKGNL 102

Query: 1324 TIQSSPPARFLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVTSASPPKYSKAARRFYNQHI 1145
            T+QS+PPAR L                       +  + V     PK+SKAARRFYN++ 
Sbjct: 103  TLQSTPPARLLHEMANASTSKKKKKGKEV----ASKAATVVPTPEPKHSKAARRFYNENF 158

Query: 1144 KQKSQRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLS 965
            +   QRLSKVLAA+GVASRR+ EE+IF+G+VTVNGSVC +PQT+VD A+D IYVNGNRL 
Sbjct: 159  RDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCKTPQTKVDPARDVIYVNGNRLP 218

Query: 964  KKLPPKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDV 788
            KKLP K+Y ALNKPKGYICSS + ++KSV+SLFDDF+K W K +PG PKPRLFTVGRLDV
Sbjct: 219  KKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDFIKSWDKRHPGQPKPRLFTVGRLDV 278

Query: 787  ATTGLIIVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDS 608
            ATTGLIIVTNDG+FT +ISHPSS L+KEYIATI+G+V++RHL+ ISEG  ++GVHC+PD+
Sbjct: 279  ATTGLIIVTNDGEFTHQISHPSSNLSKEYIATIDGEVHKRHLIAISEGTVIDGVHCIPDN 338

Query: 607  VELLSAQPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKY 428
            VELL  QPD SRPR+R+VVHEGRNHEVRELV+NAGLQL +LKR+RIGGF LP+DL LGK+
Sbjct: 339  VELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNAGLQLRALKRIRIGGFRLPADLALGKH 398

Query: 427  VELKQSDFK 401
            VEL Q++ K
Sbjct: 399  VELNQANLK 407


>gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabilis]
          Length = 404

 Score =  432 bits (1111), Expect = e-118
 Identities = 226/358 (63%), Positives = 263/358 (73%), Gaps = 1/358 (0%)
 Frame = -2

Query: 1477 EFNISFG-ASPSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPA 1301
            EFNISF  A P P     E  +L       GS      + IPWI+RG+DG   +QS PPA
Sbjct: 48   EFNISFAPAKPKPQPEATEVDSLF---GADGSQ-----LFIPWIIRGDDGNLKLQSHPPA 99

Query: 1300 RFLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVTSASPPKYSKAARRFYNQHIKQKSQRLS 1121
            R L                              S + PKYSKAARRFYN++ ++  QRLS
Sbjct: 100  RLLHAMAHADTKNSKKKKPTAAEKKKKNDKADKSVAEPKYSKAARRFYNENFRESDQRLS 159

Query: 1120 KVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLY 941
            KVLAA+GVASRRN EE+I EG+VTVNGSVC +PQTRVD AKD IYVNGNRL K+LPPK+Y
Sbjct: 160  KVLAAAGVASRRNSEELILEGRVTVNGSVCNTPQTRVDPAKDVIYVNGNRLPKRLPPKVY 219

Query: 940  FALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTGLIIVT 761
             ALNKPKGYICS   D KSV+SLFDD+LK W K N G  KPRLFTVGRLDVATTGLIIVT
Sbjct: 220  LALNKPKGYICS-VGDKKSVMSLFDDYLKIWDKRNLGQSKPRLFTVGRLDVATTGLIIVT 278

Query: 760  NDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELLSAQPD 581
            NDGDF QK+SHPSS L+KEYIATIEG V+++HL+ ISEG  ++GVHCVPDSVELL  QP+
Sbjct: 279  NDGDFAQKLSHPSSNLSKEYIATIEGTVSKKHLLVISEGTFIDGVHCVPDSVELLPNQPE 338

Query: 580  ASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELKQSD 407
              RPR+R+VVH+GR HEVREL++NAGL+++SLKRVRIGG+ LPSDLGLGK+VELKQ D
Sbjct: 339  MPRPRLRVVVHDGRKHEVRELMKNAGLEIHSLKRVRIGGYRLPSDLGLGKHVELKQGD 396


>ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619728 [Citrus sinensis]
          Length = 401

 Score =  432 bits (1111), Expect = e-118
 Identities = 224/362 (61%), Positives = 262/362 (72%), Gaps = 2/362 (0%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPAR 1298
            +FNISF A P         R             +   + IPWIVRGEDG   +Q+ PPAR
Sbjct: 44   QFNISF-APPK--------RKKTQQDDFESGEGSEQQLFIPWIVRGEDGNLKLQTHPPAR 94

Query: 1297 FLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVTSA-SPPKYSKAARRFYNQHIKQKSQRLS 1121
             +                    S  A  +      + PK SKAARRFYN + +   +RLS
Sbjct: 95   LVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGGPKAAPKLSKAARRFYNDNFRDTPERLS 154

Query: 1120 KVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLY 941
            KVLAA+GVASRR+ EE+IF+G+VTVNGSVC +PQTRVD A+D IYVNG RL KKLPPK+Y
Sbjct: 155  KVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRVDPARDIIYVNGKRLPKKLPPKVY 214

Query: 940  FALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTGLIIV 764
             ALNKPKGYICS+ + + KSV+SLFDD+LK W K NPG+P+PRLFTVGRLDVATTGLIIV
Sbjct: 215  LALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIV 274

Query: 763  TNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELLSAQP 584
            TNDGDF Q +SHPSS+L KEYIATI+G VN+RHL+ ISEG  +EG HC PD VELL  QP
Sbjct: 275  TNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQP 334

Query: 583  DASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELKQSDF 404
            D  RPRIR+VVHEGRNHEVRELV+NAGL+LYSLKR+RIGGF LPSDLG+G +VELKQSD 
Sbjct: 335  DIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 394

Query: 403  KL 398
            KL
Sbjct: 395  KL 396


>ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citrus clementina]
            gi|557538690|gb|ESR49734.1| hypothetical protein
            CICLE_v10031516mg [Citrus clementina]
          Length = 451

 Score =  432 bits (1111), Expect = e-118
 Identities = 224/362 (61%), Positives = 262/362 (72%), Gaps = 2/362 (0%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPAR 1298
            +FNISF A P         R             +   + IPWIVRGEDG   +Q+ PPAR
Sbjct: 94   QFNISF-APPK--------RKKTQQDDFESGEGSEQQLFIPWIVRGEDGNLKLQTHPPAR 144

Query: 1297 FLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVTSA-SPPKYSKAARRFYNQHIKQKSQRLS 1121
             +                    S  A  +      + PK SKAARRFYN + +   +RLS
Sbjct: 145  LVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGGPKAAPKLSKAARRFYNDNFRDTPERLS 204

Query: 1120 KVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLPPKLY 941
            KVLAA+GVASRR+ EE+IF+G+VTVNGSVC +PQTRVD A+D IYVNG RL KKLPPK+Y
Sbjct: 205  KVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRVDPARDIIYVNGKRLPKKLPPKVY 264

Query: 940  FALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTGLIIV 764
             ALNKPKGYICS+ + + KSV+SLFDD+LK W K NPG+P+PRLFTVGRLDVATTGLIIV
Sbjct: 265  LALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNPGLPRPRLFTVGRLDVATTGLIIV 324

Query: 763  TNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELLSAQP 584
            TNDGDF Q +SHPSS+L KEYIATI+G VN+RHL+ ISEG  +EG HC PD VELL  QP
Sbjct: 325  TNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTVIEGTHCTPDVVELLPPQP 384

Query: 583  DASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELKQSDF 404
            D  RPRIR+VVHEGRNHEVRELV+NAGL+LYSLKR+RIGGF LPSDLG+G +VELKQSD 
Sbjct: 385  DIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFRLPSDLGIGMHVELKQSDL 444

Query: 403  KL 398
            KL
Sbjct: 445  KL 446


>ref|XP_003558788.1| PREDICTED: ribosomal large subunit pseudouridine synthase B-like
            [Brachypodium distachyon]
          Length = 405

 Score =  432 bits (1111), Expect = e-118
 Identities = 240/429 (55%), Positives = 293/429 (68%), Gaps = 19/429 (4%)
 Frame = -2

Query: 1621 SMAGAAMAFAVFHP---RPSLLCTGPLLPFQAXXXXXXXXXXXXXXXXXXAEFNISFGAS 1451
            ++A AA A    HP   RP+ +   P L  +A                   +FNI+F A 
Sbjct: 2    ALAAAAAAVTSIHPFLSRPTRVLRLPPLLLRASSSTSTS------------DFNITF-AE 48

Query: 1450 PSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPARFLQXXXXXX 1271
            P+P    + P          G S  P   L+PWI RG DG+  + ++PP   LQ      
Sbjct: 49   PAPSKKASGP----------GPSAQP---LVPWIARGADGKPCLHTTPPPDVLQAVAAAE 95

Query: 1270 XXXXXXXXXXXXNSPGAMTSIVTSA---------------SPPKYSKAARRFYNQHIKQ- 1139
                        +  GA    VT A                PPK+SKAARRFYN++I++ 
Sbjct: 96   AEAKRAKRDASRSQKGA--GAVTDAPVASVKAKEKKAAPTGPPKFSKAARRFYNENIREH 153

Query: 1138 KSQRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKK 959
            + QRL+KVLAA+GVASRR  EE+IF+GKVTVNGSVCTSPQT+VDI+KDSIYVNGNR+SKK
Sbjct: 154  EPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTSPQTKVDISKDSIYVNGNRISKK 213

Query: 958  LPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATT 779
            LPPKLYFA+NKPKGYICSS ++SKSVISL DD+LK W K  PGIPKPRLFTVGRLDVATT
Sbjct: 214  LPPKLYFAVNKPKGYICSSGEESKSVISLLDDYLKGWNKIQPGIPKPRLFTVGRLDVATT 273

Query: 778  GLIIVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVEL 599
            GLIIVTNDG+F QK++HPSS +TKEY+ TI+G V+++HLV ISEG +V+GV  VPD VE 
Sbjct: 274  GLIIVTNDGEFAQKVAHPSSNITKEYVVTIDGAVHKKHLVAISEGTKVDGVKVVPDLVEP 333

Query: 598  LSAQPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVEL 419
            L AQPDA R R+R+VVHEGRNHEVRELV+NAGL++Y+LKRVRIG F LP+DLG+GK VEL
Sbjct: 334  LDAQPDAKRTRLRIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRFRLPADLGIGKMVEL 393

Query: 418  KQSDFKLFE 392
            K++D K  E
Sbjct: 394  KEADIKSLE 402


>ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Solanum lycopersicum]
          Length = 414

 Score =  432 bits (1110), Expect = e-118
 Identities = 223/370 (60%), Positives = 274/370 (74%), Gaps = 11/370 (2%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPM----------PMLIPWIVRGEDGQ 1328
            +FNI+F A P P   + +P   +P  +P   SN+             + IPWIVR E G 
Sbjct: 45   KFNITF-APPKPKP-KTKPEPAIPIINPNSDSNSDSVPNLDAEVGDQLYIPWIVRDEKGN 102

Query: 1327 FTIQSSPPARFLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVTSASPPKYSKAARRFYNQH 1148
             T+QS+PPAR L                       +  + V     PK+SKAARRFYN++
Sbjct: 103  LTLQSTPPARLLHEMANASTGKKKKKGKEV----ASKAATVVPTPEPKHSKAARRFYNEN 158

Query: 1147 IKQKSQRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRL 968
             +   QRLSKVLAA+GVASRR+ EE+IF+G+VTVNGSVC +PQT+VD A+D IYVNGNRL
Sbjct: 159  FRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCKTPQTKVDPARDVIYVNGNRL 218

Query: 967  SKKLPPKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLD 791
             KKLP K+Y ALNKPKGYICSS + ++KSV+SLFDDF+K W K +PG PKPRLFTVGRLD
Sbjct: 219  PKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDFIKSWDKRHPGQPKPRLFTVGRLD 278

Query: 790  VATTGLIIVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPD 611
            VATTGLIIVTNDG+FT +ISHPSS L+KEYIATI+G+V++RHL+ ISEG  ++GVHC PD
Sbjct: 279  VATTGLIIVTNDGEFTHQISHPSSNLSKEYIATIDGEVHKRHLIAISEGTIIDGVHCTPD 338

Query: 610  SVELLSAQPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGK 431
            +VELL  QPD SRPR+R+VVHEGRNHEVRELV+NAGLQL +LKR+RIGGF LP+DL LGK
Sbjct: 339  NVELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNAGLQLRALKRIRIGGFRLPADLALGK 398

Query: 430  YVELKQSDFK 401
            +VEL Q++ K
Sbjct: 399  HVELNQANLK 408


>gb|AFK43008.1| unknown [Medicago truncatula]
          Length = 408

 Score =  430 bits (1106), Expect = e-118
 Identities = 222/365 (60%), Positives = 268/365 (73%), Gaps = 6/365 (1%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVP-DTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPA 1301
            +FNISF  S        +P+T  P D    G      P++IPWIVRGEDG F + S PP 
Sbjct: 39   KFNISFSPSNPKPKPTPQPKTQTPHDDDDEG------PLMIPWIVRGEDGNFKLLSEPPP 92

Query: 1300 RFLQXXXXXXXXXXXXXXXXXXNSPGA---MTSIVTSASPPKYSKAARRFYNQHIKQKS- 1133
             FL+                   +       T I    +PPKYSKAARRFYN++IK  S 
Sbjct: 93   SFLKEMANAQTGTKKSEKDQITKNKKKGEKETKIRAVTAPPKYSKAARRFYNENIKDDSG 152

Query: 1132 QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGNRLSKKLP 953
             RLSKVLAASGVASRR+CE++IF+GKVTVNGSVC +PQT+VD +KD+IYVNG+RL K+ P
Sbjct: 153  TRLSKVLAASGVASRRSCEDLIFKGKVTVNGSVCNTPQTKVDPSKDNIYVNGSRLPKRQP 212

Query: 952  PKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGRLDVATTG 776
             K+Y ALNKPKGYICSS + +SKSVISLFDDFL  W K +PG+P PRLFTVGRLDVATTG
Sbjct: 213  HKVYLALNKPKGYICSSGEKESKSVISLFDDFLSSWDKKHPGVPPPRLFTVGRLDVATTG 272

Query: 775  LIIVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCVPDSVELL 596
            L+IVTNDGDF QK+SHPSS  +KEYIAT++G V++RHL  ISEG  +EGVHCVPDSVELL
Sbjct: 273  LLIVTNDGDFAQKLSHPSSNFSKEYIATVDGLVHKRHLTAISEGTTIEGVHCVPDSVELL 332

Query: 595  SAQPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGLGKYVELK 416
               PD  R R+R+VVH+GR HEVRELV++AGL+++SLKRVRIGGF LP DLG+GKY+EL 
Sbjct: 333  PRMPDTQRSRLRIVVHDGRKHEVRELVKSAGLEIHSLKRVRIGGFRLPPDLGIGKYIELN 392

Query: 415  QSDFK 401
             ++ K
Sbjct: 393  PTNLK 397


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  430 bits (1106), Expect = e-118
 Identities = 226/372 (60%), Positives = 265/372 (71%), Gaps = 13/372 (3%)
 Frame = -2

Query: 1477 EFNISFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPAR 1298
            EF+ISF          A P+   P  S T     P  + IPWIVRG+DG   +QS PPAR
Sbjct: 48   EFDISF----------APPK---PKPSSTRGGATPQQLFIPWIVRGDDGTLKLQSQPPAR 94

Query: 1297 FLQXXXXXXXXXXXXXXXXXXNSPGAMTSIVTSASP------------PKYSKAARRFYN 1154
             +                         TS   SA+             PK SKAARRFYN
Sbjct: 95   LIHNLAIDATTQNPKKKDKPKKKQPQATSSSASATASASSPASHSEVKPKLSKAARRFYN 154

Query: 1153 QHIKQKSQRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNGN 974
            ++ K+  QRLSKVLAA+GVASRR  EE+IF+GKVTVNG +C +PQTRVD ++D IYVNGN
Sbjct: 155  ENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGN 214

Query: 973  RLSKKLPPKLYFALNKPKGYICSSAD-DSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGR 797
            R+ KKLPPK+YFALNKPKGYICSS + + KSVISLFD++L  W K NPG PKPRLFTVGR
Sbjct: 215  RIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLFDEYLSSWDKRNPGTPKPRLFTVGR 274

Query: 796  LDVATTGLIIVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCV 617
            LDVATTGLI+VTNDGDF QK+SHPSS L KEYI T+ G +++RHL+ ISEG  VEGVHCV
Sbjct: 275  LDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTIVEGVHCV 334

Query: 616  PDSVELLSAQPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGL 437
            PDSVEL+  Q D  R R+R+VVHEGRNHEVRELV+NAGL+++SLKRVRIGGF LPSDLGL
Sbjct: 335  PDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGL 394

Query: 436  GKYVELKQSDFK 401
            GK+VELKQS+ K
Sbjct: 395  GKHVELKQSELK 406


>ref|NP_001152020.1| LOC100285657 [Zea mays] gi|195651911|gb|ACG45423.1| ribosomal large
            subunit pseudouridine synthase B [Zea mays]
          Length = 406

 Score =  429 bits (1104), Expect = e-117
 Identities = 220/375 (58%), Positives = 278/375 (74%), Gaps = 17/375 (4%)
 Frame = -2

Query: 1465 SFGASPSPGVNEAEPRTLVPDTSPTGSSNAPMPMLIPWIVRGEDGQFTIQSSPPARFLQX 1286
            S  ASP   +  AEP       +P+  + +  P L+PWIVRGEDG+  + +SPP   +Q 
Sbjct: 37   STSASPDFNITFAEP-------APSKKAPSAQP-LVPWIVRGEDGKPRLSTSPPPDVIQA 88

Query: 1285 XXXXXXXXXXXXXXXXXNSP-GAMTSIVTSAS---------------PPKYSKAARRFYN 1154
                                 GA+ +   +AS               PPK+SKAARRFYN
Sbjct: 89   IALAEAEAKKAAKKETLKGQNGAVAAAAAAASNASVKGKERKPAPTVPPKFSKAARRFYN 148

Query: 1153 QHIKQKS-QRLSKVLAASGVASRRNCEEIIFEGKVTVNGSVCTSPQTRVDIAKDSIYVNG 977
            ++IK++  QRL+KVLAA+GVASRR  EE+IF+GK TVNGSVCTSPQT+VDI+KDSIYVNG
Sbjct: 149  ENIKEREPQRLAKVLAAAGVASRRTSEELIFQGKXTVNGSVCTSPQTKVDISKDSIYVNG 208

Query: 976  NRLSKKLPPKLYFALNKPKGYICSSADDSKSVISLFDDFLKKWIKSNPGIPKPRLFTVGR 797
            NR+SKKLPPKLYFA+NKPKGYICS  ++SKSV+SLF+D+LK W K  PG+PKPRLFTVGR
Sbjct: 209  NRISKKLPPKLYFAVNKPKGYICSCGEESKSVVSLFNDYLKGWNKIQPGLPKPRLFTVGR 268

Query: 796  LDVATTGLIIVTNDGDFTQKISHPSSELTKEYIATIEGKVNRRHLVTISEGAQVEGVHCV 617
            LDVAT GLIIVTNDG+F QK++HPSS +TKEY+ TI+G V+++HL+ ISEG +++GV C+
Sbjct: 269  LDVATAGLIIVTNDGEFAQKLAHPSSNVTKEYVVTIDGAVHKKHLIAISEGTKIDGVMCI 328

Query: 616  PDSVELLSAQPDASRPRIRLVVHEGRNHEVRELVRNAGLQLYSLKRVRIGGFSLPSDLGL 437
            PD VE L+AQ D  + R+R+VVHEGRNHEVRELV+NAGLQ+Y+LKRVRIG F LP+DLG+
Sbjct: 329  PDLVEPLAAQSDTRKTRLRIVVHEGRNHEVRELVQNAGLQVYALKRVRIGRFRLPADLGI 388

Query: 436  GKYVELKQSDFKLFE 392
            GK+VELKQ+D K  +
Sbjct: 389  GKFVELKQADIKALD 403