BLASTX nr result
ID: Zingiber24_contig00051877
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00051877
(248 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedice... 81 1e-13
ref|XP_003606033.1| DNA-directed RNA polymerase [Medicago trunca... 74 2e-11
ref|XP_003605607.1| DNA-directed RNA polymerase subunit beta, pa... 74 2e-11
ref|XP_003600568.1| DNA-directed RNA polymerase beta' subunit [M... 74 2e-11
ref|XP_004516189.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 70 2e-10
ref|XP_003599844.1| DNA-directed RNA polymerase subunit beta [Me... 66 5e-09
ref|YP_008963385.1| RNA polymerase beta (chloroplast) [Sedum sar... 65 9e-09
gb|ABU85440.1| RNA polymerase beta subunit [Musa acuminata] 64 2e-08
ref|YP_008854585.1| RNA polymerase beta [Curcuma roscoeana] gi|5... 62 8e-08
ref|YP_008854502.1| RNA polymerase beta [Ravenala madagascariens... 62 8e-08
ref|YP_008854416.1| RNA polymerase beta [Musa textilis] gi|55763... 62 8e-08
emb|CCW72366.1| rpoC1 (chloroplast) [Musa acuminata subsp. malac... 62 8e-08
ref|YP_007475695.1| RNA polymerase beta [Zingiber spectabile] gi... 62 8e-08
ref|YP_007475610.1| RNA polymerase beta [Heliconia collinsiana] ... 62 8e-08
ref|YP_006665771.1| RNA polymerase beta (chloroplast) [Elodea ca... 62 8e-08
gb|AEX94492.1| RNA polymerase beta (chloroplast) [Cordyline aust... 62 8e-08
gb|AHA13173.1| RNA polymerase beta [Thaumatococcus daniellii] 62 1e-07
gb|AHA12830.1| RNA polymerase beta [Maranta leuconeura] 62 1e-07
gb|AHA12746.1| RNA polymerase beta [Canna indica] 62 1e-07
gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia] 62 1e-07
>gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedicellaris]
Length = 718
Score = 81.3 bits (199), Expect = 1e-13
Identities = 41/52 (78%), Positives = 45/52 (86%)
Frame = +2
Query: 89 YLSRMKGNLHVRF*RGESNPTGTYLDFSFARPIAKKPTFLRLRGLFEYEIQS 244
YLSRMKGN+HVRF RG + P +Y +FSFARPI KKPTFLRLRGLFEYEIQS
Sbjct: 158 YLSRMKGNIHVRFRRGGA-PIESYPNFSFARPITKKPTFLRLRGLFEYEIQS 208
>ref|XP_003606033.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355507088|gb|AES88230.1| DNA-directed RNA polymerase
[Medicago truncatula]
Length = 1748
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +2
Query: 98 RMKGNLHVRF*RGESNPTGTYLDFSFARPIAKKPTFLRLRGLFEYEIQS 244
RM+GN HVRF +GE + G+Y +FSFARP+ KKPTFLRLRG FEYEIQS
Sbjct: 1198 RMRGNPHVRFSKGEIHLIGSYPNFSFARPVVKKPTFLRLRGSFEYEIQS 1246
>ref|XP_003605607.1| DNA-directed RNA polymerase subunit beta, partial [Medicago
truncatula] gi|355506662|gb|AES87804.1| DNA-directed RNA
polymerase subunit beta, partial [Medicago truncatula]
Length = 2049
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +2
Query: 98 RMKGNLHVRF*RGESNPTGTYLDFSFARPIAKKPTFLRLRGLFEYEIQS 244
RM+GN HVRF +GE + G+Y +FSFARP+ KKPTFLRLRG FEYEIQS
Sbjct: 592 RMRGNPHVRFSKGEIHLIGSYPNFSFARPVVKKPTFLRLRGSFEYEIQS 640
>ref|XP_003600568.1| DNA-directed RNA polymerase beta' subunit [Medicago truncatula]
gi|357460575|ref|XP_003600569.1| DNA-directed RNA
polymerase beta' subunit [Medicago truncatula]
gi|355489616|gb|AES70819.1| DNA-directed RNA polymerase
beta' subunit [Medicago truncatula]
gi|355489617|gb|AES70820.1| DNA-directed RNA polymerase
beta' subunit [Medicago truncatula]
Length = 710
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +2
Query: 98 RMKGNLHVRF*RGESNPTGTYLDFSFARPIAKKPTFLRLRGLFEYEIQS 244
RM+GN HVRF +GE + G+Y +FSFARP+ KKPTFLRLRG FEYEIQS
Sbjct: 146 RMRGNPHVRFSKGEIHLIGSYPNFSFARPVVKKPTFLRLRGSFEYEIQS 194
>ref|XP_004516189.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit
beta-like [Cicer arietinum]
Length = 1747
Score = 70.5 bits (171), Expect = 2e-10
Identities = 36/50 (72%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Frame = +2
Query: 98 RMKGNLHVRF*RGESNP-TGTYLDFSFARPIAKKPTFLRLRGLFEYEIQS 244
RM+GN HVRF +GE + +G+Y +FSFARPI KKPTFLRLRG FEYEIQS
Sbjct: 1198 RMRGNPHVRFSKGEIHLISGSYPNFSFARPIIKKPTFLRLRGSFEYEIQS 1247
>ref|XP_003599844.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355488892|gb|AES70095.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 114
Score = 65.9 bits (159), Expect = 5e-09
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = +2
Query: 95 SRMKGNLHVRF*RGESNPTGTYLDFSFARPIAKKPTFLRLRGLFEYEIQS 244
S+M+GN +VRF GE + +Y +FSFARP+ KKPT LRLRG FEYEIQS
Sbjct: 54 SQMRGNPYVRFSNGEIHLIRSYPNFSFARPVVKKPTLLRLRGSFEYEIQS 103
>ref|YP_008963385.1| RNA polymerase beta (chloroplast) [Sedum sarmentosum]
gi|402797520|gb|AFQ99052.1| RNA polymerase beta
(chloroplast) [Sedum sarmentosum]
Length = 552
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/34 (88%), Positives = 33/34 (97%)
Frame = +2
Query: 143 NPTGTYLDFSFARPIAKKPTFLRLRGLFEYEIQS 244
+PTG+Y +FSFARPIAKKPTFLRLRGLFEYEIQS
Sbjct: 7 DPTGSYPNFSFARPIAKKPTFLRLRGLFEYEIQS 40
>gb|ABU85440.1| RNA polymerase beta subunit [Musa acuminata]
Length = 695
Score = 63.9 bits (154), Expect = 2e-08
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
YLDFSFARPIAKKPTFLRLRGLFEYEIQSR
Sbjct: 154 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 183
>ref|YP_008854585.1| RNA polymerase beta [Curcuma roscoeana] gi|557637492|gb|AHA13087.1|
RNA polymerase beta [Curcuma roscoeana]
Length = 684
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
Y DFSFARPIAKKPTFLRLRGLFEYEIQSR
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSR 171
>ref|YP_008854502.1| RNA polymerase beta [Ravenala madagascariensis]
gi|557636990|gb|AHA12591.1| RNA polymerase beta
[Ravenala madagascariensis]
Length = 690
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
Y DFSFARPIAKKPTFLRLRGLFEYEIQSR
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSR 171
>ref|YP_008854416.1| RNA polymerase beta [Musa textilis] gi|557636903|gb|AHA12505.1| RNA
polymerase beta [Musa textilis]
Length = 686
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
Y DFSFARPIAKKPTFLRLRGLFEYEIQSR
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSR 171
>emb|CCW72366.1| rpoC1 (chloroplast) [Musa acuminata subsp. malaccensis]
Length = 686
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
Y DFSFARPIAKKPTFLRLRGLFEYEIQSR
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSR 171
>ref|YP_007475695.1| RNA polymerase beta [Zingiber spectabile]
gi|449326175|gb|AGE92760.1| RNA polymerase beta
[Zingiber spectabile]
Length = 684
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
Y DFSFARPIAKKPTFLRLRGLFEYEIQSR
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSR 171
>ref|YP_007475610.1| RNA polymerase beta [Heliconia collinsiana]
gi|449326089|gb|AGE92675.1| RNA polymerase beta
[Heliconia collinsiana]
Length = 684
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
Y DFSFARPIAKKPTFLRLRGLFEYEIQSR
Sbjct: 142 YCDFSFARPIAKKPTFLRLRGLFEYEIQSR 171
>ref|YP_006665771.1| RNA polymerase beta (chloroplast) [Elodea canadensis]
gi|374094587|gb|AEY84643.1| RNA polymerase beta
(chloroplast) [Elodea canadensis]
Length = 688
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +2
Query: 152 GTYLDFSFARPIAKKPTFLRLRGLFEYEIQS 244
GTY DFSFARPI KKPTFLRLRGLFEYEIQS
Sbjct: 146 GTYPDFSFARPITKKPTFLRLRGLFEYEIQS 176
>gb|AEX94492.1| RNA polymerase beta (chloroplast) [Cordyline australis]
Length = 685
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQS 244
YLDFSFARPIAKKPTFLRLRGLFEYEIQS
Sbjct: 145 YLDFSFARPIAKKPTFLRLRGLFEYEIQS 173
>gb|AHA13173.1| RNA polymerase beta [Thaumatococcus daniellii]
Length = 687
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
Y DFSFARP+AKKPTFLRLRGLFEYEIQSR
Sbjct: 142 YCDFSFARPVAKKPTFLRLRGLFEYEIQSR 171
>gb|AHA12830.1| RNA polymerase beta [Maranta leuconeura]
Length = 686
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
Y DFSFARP+AKKPTFLRLRGLFEYEIQSR
Sbjct: 142 YCDFSFARPVAKKPTFLRLRGLFEYEIQSR 171
>gb|AHA12746.1| RNA polymerase beta [Canna indica]
Length = 684
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
Y DFSFARP+AKKPTFLRLRGLFEYEIQSR
Sbjct: 142 YCDFSFARPVAKKPTFLRLRGLFEYEIQSR 171
>gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia]
Length = 684
Score = 61.6 bits (148), Expect = 1e-07
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +2
Query: 158 YLDFSFARPIAKKPTFLRLRGLFEYEIQSR 247
YLDFSFARPIAKKPTFLRLRG FEYEIQSR
Sbjct: 146 YLDFSFARPIAKKPTFLRLRGSFEYEIQSR 175