BLASTX nr result
ID: Zingiber24_contig00051794
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00051794
(312 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni... 74 2e-11
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub... 68 1e-09
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub... 67 2e-09
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps... 67 2e-09
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th... 66 4e-09
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th... 66 4e-09
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub... 66 5e-09
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 66 5e-09
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub... 66 5e-09
gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza... 66 5e-09
tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family... 65 7e-09
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub... 65 9e-09
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr... 65 9e-09
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab... 65 1e-08
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub... 64 3e-08
ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [S... 62 6e-08
ref|XP_002308049.1| predicted protein [Populus trichocarpa] 62 6e-08
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana... 62 8e-08
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub... 62 1e-07
gb|ACN85238.1| putative RNA polymerase A(I) large subunit [Oryza... 62 1e-07
>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
polymerase I largest subunit, putative [Ricinus
communis]
Length = 1686
Score = 73.9 bits (180), Expect = 2e-11
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Frame = -3
Query: 277 WTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRASDIKANILLGY 101
WTSLQ +E+ +VL NF+ K K C NC NP+IT P FGWF+ G+ + I+AN++ G+
Sbjct: 182 WTSLQFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVITGH 241
Query: 100 NVGP-TSSESKNSTVTHSRGESGSEMADEHS 11
+G SE + +T E +E D+HS
Sbjct: 242 QLGGLLGSEIEGTTDV----EDAAEPGDQHS 268
>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
arietinum]
Length = 1660
Score = 67.8 bits (164), Expect = 1e-09
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Frame = -3
Query: 310 DIEVASSEH--KTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGL 140
D + +S+E + WTSLQ SE+ +VL F+ + + C NCG NP IT P FGWF+ K L
Sbjct: 154 DSQCSSAEQLGENWTSLQFSEAMSVLRKFLKKEYRKCQNCGYINPKITIPTFGWFHVKAL 213
Query: 139 RASDIKANILLGYNVGPTSSESKNSTVTHSRGES 38
A+ +AN++ G +V +SE + ++ G++
Sbjct: 214 SAAQARANVISGNDVS-LASEIIHDDISLGNGDT 246
>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
arietinum]
Length = 1650
Score = 67.4 bits (163), Expect = 2e-09
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Frame = -3
Query: 310 DIEVASSEH--KTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGL 140
D + +S E + WTSLQ SE+ +VL F+ + + C NCG NP IT P FGWF+ K L
Sbjct: 154 DSQCSSDEQLGENWTSLQFSEAMSVLRKFLKKEFRKCQNCGNINPKITKPTFGWFHVKAL 213
Query: 139 RASDIKANILLGYNVGPTSSESKNSTVTHSRGES 38
A+ +AN++ G + +SE + ++ G++
Sbjct: 214 SAAQARANVISGIDAS-LASEIIHDDISLGNGDT 246
>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
gi|482559195|gb|EOA23386.1| hypothetical protein
CARUB_v10016563mg [Capsella rubella]
Length = 1651
Score = 67.0 bits (162), Expect = 2e-09
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = -3
Query: 310 DIEVASSEHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRA 134
+ E E + WTSLQ +E AV+ NFM K C+ C KNP + P+FGW KG+ A
Sbjct: 169 ECEDPDMEDQRWTSLQFAEVTAVMKNFMKLTSKECNKCKAKNPKLEKPMFGWVRMKGMNA 228
Query: 133 SDIKANILLGYNVGPTSSESKN 68
S + AN++ G V ++S +N
Sbjct: 229 SAVGANLIRGLKVKKSTSSVEN 250
>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
Length = 1689
Score = 66.2 bits (160), Expect = 4e-09
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = -3
Query: 283 KTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRASDIKANILL 107
K WTSLQ E+ +VL NF+ K C NC KNP+IT PVFGW + G+ + ++ N++
Sbjct: 171 KEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIR 230
Query: 106 GYNVGPTSSESKNSTVTHSRGESGSEMADEHSS 8
G + T S+ SG E AD+ SS
Sbjct: 231 GCKMVDTFSDEAG---------SGLEDADDVSS 254
>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
Length = 1665
Score = 66.2 bits (160), Expect = 4e-09
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = -3
Query: 283 KTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRASDIKANILL 107
K WTSLQ E+ +VL NF+ K C NC KNP+IT PVFGW + G+ + ++ N++
Sbjct: 171 KEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIR 230
Query: 106 GYNVGPTSSESKNSTVTHSRGESGSEMADEHSS 8
G + T S+ SG E AD+ SS
Sbjct: 231 GCKMVDTFSDEAG---------SGLEDADDVSS 254
>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
brachyantha]
Length = 1755
Score = 65.9 bits (159), Expect = 5e-09
Identities = 26/63 (41%), Positives = 41/63 (65%)
Frame = -3
Query: 298 ASSEHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFNKGLRASDIKA 119
+ SE+KTWTS+Q E ++ NFM ++K C +C +KNP I+ P++GW K S ++A
Sbjct: 165 SESENKTWTSIQLKEVLSIFANFMKKRQKKCTHCNKKNPKISHPIYGWLIKDADISAVRA 224
Query: 118 NIL 110
N +
Sbjct: 225 NAI 227
>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1-like [Cucumis sativus]
Length = 1652
Score = 65.9 bits (159), Expect = 5e-09
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = -3
Query: 304 EVASSEHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRASD 128
E + + +TWTSLQ SE+ +V+ F+ K+ NC CG K+P IT P FGWF+ KGL
Sbjct: 165 ERKNGQPETWTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQ 224
Query: 127 IKANILLGYNVGPTSSESKNSTVTHSRGESGSEMADEHSSLE 2
+AN + ++ V+ S G G +E ++ E
Sbjct: 225 KRANAI-----------RRSKPVSVSSGAEGVSSLEEETTTE 255
>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
sativus]
Length = 1650
Score = 65.9 bits (159), Expect = 5e-09
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = -3
Query: 304 EVASSEHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRASD 128
E + + +TWTSLQ SE+ +V+ F+ K+ NC CG K+P IT P FGWF+ KGL
Sbjct: 159 ERKNGQPETWTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQ 218
Query: 127 IKANILLGYNVGPTSSESKNSTVTHSRGESGSEMADEHSSLE 2
+AN + ++ V+ S G G +E ++ E
Sbjct: 219 KRANAI-----------RRSKPVSVSSGAEGVSSLEEETTTE 249
>gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza brachyantha]
Length = 1138
Score = 65.9 bits (159), Expect = 5e-09
Identities = 26/63 (41%), Positives = 41/63 (65%)
Frame = -3
Query: 298 ASSEHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFNKGLRASDIKA 119
+ SE+KTWTS+Q E ++ NFM ++K C +C +KNP I+ P++GW K S ++A
Sbjct: 165 SESENKTWTSIQLKEVLSIFANFMKKRQKKCTHCNKKNPKISHPIYGWLIKDADISAVRA 224
Query: 118 NIL 110
N +
Sbjct: 225 NAI 227
>tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 548
Score = 65.5 bits (158), Expect = 7e-09
Identities = 31/94 (32%), Positives = 50/94 (53%)
Frame = -3
Query: 289 EHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFNKGLRASDIKANIL 110
+ KTWTS+Q E ++ M ++K C C K+P+I+SP+FGW K +AS ++ N +
Sbjct: 170 DKKTWTSIQLKEVLSIFSKIMKKRQKKCAKCDMKSPTISSPIFGWLVKDTKASAVRTNAI 229
Query: 109 LGYNVGPTSSESKNSTVTHSRGESGSEMADEHSS 8
+ + K H+ GE+G +E SS
Sbjct: 230 ADFKL-------KGDGDIHNSGETGVSGLEEESS 256
>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
sinensis]
Length = 1715
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = -3
Query: 301 VASSEHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRASDI 125
V + + + WTSLQ +E++ L F+ + C NC KNP I+ P FGW + G+ +DI
Sbjct: 172 VRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADI 231
Query: 124 KANILLGYNVGPTSS 80
+AN++ G N+G T S
Sbjct: 232 RANLIRGCNLGETFS 246
>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
gi|557523327|gb|ESR34694.1| hypothetical protein
CICLE_v10004132mg [Citrus clementina]
Length = 1715
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = -3
Query: 301 VASSEHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRASDI 125
V + + + WTSLQ +E++ L F+ + C NC KNP I+ P FGW + G+ +DI
Sbjct: 172 VRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADI 231
Query: 124 KANILLGYNVGPTSS 80
+AN++ G N+G T S
Sbjct: 232 RANLIRGCNLGETFS 246
>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
Length = 1678
Score = 64.7 bits (156), Expect = 1e-08
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = -3
Query: 304 EVASSEHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRASD 128
E + E + WTSLQ +E AV+ NFM K+C+ C NP + P+FGW K ++ SD
Sbjct: 181 EDSDMEDQRWTSLQFAEVTAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGWVRMKAMKGSD 240
Query: 127 IKANILLGYNVGPTSSESKN 68
I AN++ G + ++S +N
Sbjct: 241 IVANVIRGLKLKKSTSSVEN 260
>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
italica]
Length = 1682
Score = 63.5 bits (153), Expect = 3e-08
Identities = 31/91 (34%), Positives = 47/91 (51%)
Frame = -3
Query: 289 EHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFNKGLRASDIKANIL 110
+ KTWTS+Q E ++ M ++K C C K+P+ +SP+FGW K AS ++AN +
Sbjct: 188 DKKTWTSVQLKEVLSIFSKIMKKRQKKCAKCDMKSPTFSSPIFGWLVKDTSASAVRANAI 247
Query: 109 LGYNVGPTSSESKNSTVTHSRGESGSEMADE 17
+ + K HS GE+G DE
Sbjct: 248 ADFKL-------KGDGGAHSSGETGVSGFDE 271
>ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [Sorghum bicolor]
gi|241945458|gb|EES18603.1| hypothetical protein
SORBIDRAFT_09g027223 [Sorghum bicolor]
Length = 799
Score = 62.4 bits (150), Expect = 6e-08
Identities = 29/94 (30%), Positives = 50/94 (53%)
Frame = -3
Query: 289 EHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFNKGLRASDIKANIL 110
++KTWTS+Q E ++ M ++ C C K+P+I+SP+FGW K AS ++AN +
Sbjct: 170 DNKTWTSVQLKEVLSIFSKIMKKRQTKCAKCDMKSPTISSPIFGWLVKDTSASAVRANAI 229
Query: 109 LGYNVGPTSSESKNSTVTHSRGESGSEMADEHSS 8
+ + K H+ G++G DE ++
Sbjct: 230 ADFKL-------KGDGDAHNSGDTGVSGLDEETT 256
>ref|XP_002308049.1| predicted protein [Populus trichocarpa]
Length = 1168
Score = 62.4 bits (150), Expect = 6e-08
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Frame = -3
Query: 292 SEHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRASDIKAN 116
S+ WTSLQ SE+ ++L NF+ + K C NC NP+I P FGWF+ GL + I++N
Sbjct: 172 SKQSEWTSLQLSEAMSILNNFLKLESKKCKNCSASNPNIRKPTFGWFHWAGLSNAAIRSN 231
Query: 115 ILLGYNV-GPTSS------ESKNSTVTHSRGESGSEM-ADEHSSLE 2
++ + GP +++++T + S ES + EH L+
Sbjct: 232 LIKQQTIEGPFGGAFEELIDAEDATKSPSNKESATNRNLKEHQKLQ 277
>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
190K chain-like protein [Arabidopsis thaliana]
gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
[Arabidopsis thaliana]
Length = 1670
Score = 62.0 bits (149), Expect = 8e-08
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = -3
Query: 310 DIEVASSEHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFN-KGLRA 134
+ E + E + WTSLQ +E AVL NFM K+C C NP + P+FGW + ++
Sbjct: 179 ECEDSDVEDQRWTSLQFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKD 238
Query: 133 SDIKANILLGYNVGPTSSESKN 68
SD+ AN++ G + ++S +N
Sbjct: 239 SDVGANVIRGLKLKKSTSSVEN 260
>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
max]
Length = 1651
Score = 61.6 bits (148), Expect = 1e-07
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = -3
Query: 283 KTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFNKG-LRASDIKANILL 107
+ WTSLQ SE+ +VL ++ K K C CG KNP I+ P FGWF+ L A + +A+
Sbjct: 174 ENWTSLQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVLSADETRAD--- 230
Query: 106 GYNVGPTSSESKNSTVTHSRGES 38
+ SE+ N ++ G++
Sbjct: 231 --TIRSVESETTNDDISLGGGDT 251
>gb|ACN85238.1| putative RNA polymerase A(I) large subunit [Oryza minuta]
Length = 563
Score = 61.6 bits (148), Expect = 1e-07
Identities = 24/60 (40%), Positives = 39/60 (65%)
Frame = -3
Query: 289 EHKTWTSLQHSESRAVLYNFMSDKRKNCDNCGRKNPSITSPVFGWFNKGLRASDIKANIL 110
E+KTWTS+Q E+ ++ M K+K C +C +KNP I+ P++GW K +S ++AN +
Sbjct: 176 ENKTWTSIQLKEALSIFAKLMKKKQKKCAHCEKKNPIISHPIYGWLIKDTTSSSVRANAI 235