BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00051707
         (299 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY09621.1| Cleavage and polyadenylation specificity factor (...   135   7e-30
gb|EOY09620.1| Cleavage and polyadenylation specificity factor (...   135   7e-30
gb|EOY09619.1| Cleavage and polyadenylation specificity factor (...   135   7e-30
gb|EOY09618.1| Cleavage and polyadenylation specificity factor (...   135   7e-30
emb|CBI29964.3| unnamed protein product [Vitis vinifera]              135   7e-30
ref|XP_002276675.1| PREDICTED: pre-mRNA-splicing factor rse1-lik...   135   7e-30
emb|CAN78747.1| hypothetical protein VITISV_022228 [Vitis vinifera]   135   7e-30
ref|XP_006296833.1| hypothetical protein CARUB_v10012818mg [Caps...   131   1e-28
ref|XP_006577114.1| PREDICTED: splicing factor 3B subunit 3-like...   128   7e-28
ref|XP_006577113.1| PREDICTED: splicing factor 3B subunit 3-like...   128   7e-28
ref|XP_006577112.1| PREDICTED: splicing factor 3B subunit 3-like...   128   7e-28
ref|XP_002882757.1| predicted protein [Arabidopsis lyrata subsp....   128   9e-28
gb|AAF23212.1|AC016795_25 hypothetical protein [Arabidopsis thal...   127   1e-27
ref|NP_187802.2| Cleavage and polyadenylation specificity factor...   127   1e-27
ref|NP_850565.1| Cleavage and polyadenylation specificity factor...   127   1e-27
ref|XP_006351359.1| PREDICTED: pre-mRNA-splicing factor prp12-li...   127   2e-27
ref|XP_006351358.1| PREDICTED: pre-mRNA-splicing factor prp12-li...   127   2e-27
gb|ESW35025.1| hypothetical protein PHAVU_001G200200g [Phaseolus...   127   2e-27
ref|XP_003638105.1| Pre-mRNA-splicing factor rse1 [Medicago trun...   126   3e-27
ref|XP_003638096.1| DNA damage-binding protein, partial [Medicag...   126   3e-27

>gb|EOY09621.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
           protein isoform 4 [Theobroma cacao]
          Length = 1127

 Score =  135 bits (339), Expect = 7e-30
 Identities = 59/98 (60%), Positives = 84/98 (85%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           ++LCLP+ +AH EGIPLS P  + WSP+N++IS+GAVGQNL++V+TSNP FL+ILGVRS+
Sbjct: 482 IRLCLPTKAAHSEGIPLSSPVCTSWSPDNISISLGAVGQNLIVVSTSNPYFLFILGVRSL 541

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEV 296
           SA++ EIYE+QHV+L+YE+SCISIP ++   +H +S +
Sbjct: 542 SAYHHEIYELQHVKLRYELSCISIPKKHFEPRHSSSSL 579


>gb|EOY09620.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
           protein isoform 3 [Theobroma cacao]
          Length = 1254

 Score =  135 bits (339), Expect = 7e-30
 Identities = 59/98 (60%), Positives = 84/98 (85%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           ++LCLP+ +AH EGIPLS P  + WSP+N++IS+GAVGQNL++V+TSNP FL+ILGVRS+
Sbjct: 590 IRLCLPTKAAHSEGIPLSSPVCTSWSPDNISISLGAVGQNLIVVSTSNPYFLFILGVRSL 649

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEV 296
           SA++ EIYE+QHV+L+YE+SCISIP ++   +H +S +
Sbjct: 650 SAYHHEIYELQHVKLRYELSCISIPKKHFEPRHSSSSL 687


>gb|EOY09619.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
           protein isoform 2, partial [Theobroma cacao]
          Length = 1237

 Score =  135 bits (339), Expect = 7e-30
 Identities = 59/98 (60%), Positives = 84/98 (85%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           ++LCLP+ +AH EGIPLS P  + WSP+N++IS+GAVGQNL++V+TSNP FL+ILGVRS+
Sbjct: 502 IRLCLPTKAAHSEGIPLSSPVCTSWSPDNISISLGAVGQNLIVVSTSNPYFLFILGVRSL 561

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEV 296
           SA++ EIYE+QHV+L+YE+SCISIP ++   +H +S +
Sbjct: 562 SAYHHEIYELQHVKLRYELSCISIPKKHFEPRHSSSSL 599


>gb|EOY09618.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
           protein isoform 1 [Theobroma cacao]
          Length = 1391

 Score =  135 bits (339), Expect = 7e-30
 Identities = 59/98 (60%), Positives = 84/98 (85%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           ++LCLP+ +AH EGIPLS P  + WSP+N++IS+GAVGQNL++V+TSNP FL+ILGVRS+
Sbjct: 590 IRLCLPTKAAHSEGIPLSSPVCTSWSPDNISISLGAVGQNLIVVSTSNPYFLFILGVRSL 649

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEV 296
           SA++ EIYE+QHV+L+YE+SCISIP ++   +H +S +
Sbjct: 650 SAYHHEIYELQHVKLRYELSCISIPKKHFEPRHSSSSL 687


>emb|CBI29964.3| unnamed protein product [Vitis vinifera]
          Length = 1363

 Score =  135 bits (339), Expect = 7e-30
 Identities = 61/92 (66%), Positives = 79/92 (85%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           VKLCLP++ AHPEGIPL+ P  + W P N++IS+GAVG NL++VATS+PCFL+ILGVRS+
Sbjct: 585 VKLCLPTTVAHPEGIPLASPICTSWFPENISISLGAVGYNLIVVATSSPCFLFILGVRSV 644

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSK 278
           SA+ +EIYE+QHVRLQ EVSCISIP ++ + K
Sbjct: 645 SAYQYEIYEMQHVRLQNEVSCISIPHKHFDKK 676


>ref|XP_002276675.1| PREDICTED: pre-mRNA-splicing factor rse1-like [Vitis vinifera]
          Length = 1387

 Score =  135 bits (339), Expect = 7e-30
 Identities = 61/92 (66%), Positives = 79/92 (85%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           VKLCLP++ AHPEGIPL+ P  + W P N++IS+GAVG NL++VATS+PCFL+ILGVRS+
Sbjct: 585 VKLCLPTTVAHPEGIPLASPICTSWFPENISISLGAVGYNLIVVATSSPCFLFILGVRSV 644

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSK 278
           SA+ +EIYE+QHVRLQ EVSCISIP ++ + K
Sbjct: 645 SAYQYEIYEMQHVRLQNEVSCISIPHKHFDKK 676


>emb|CAN78747.1| hypothetical protein VITISV_022228 [Vitis vinifera]
          Length = 1298

 Score =  135 bits (339), Expect = 7e-30
 Identities = 61/92 (66%), Positives = 79/92 (85%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           VKLCLP++ AHPEGIPL+ P  + W P N++IS+GAVG NL++VATS+PCFL+ILGVRS+
Sbjct: 626 VKLCLPTTVAHPEGIPLASPICTSWFPENISISLGAVGYNLIVVATSSPCFLFILGVRSV 685

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSK 278
           SA+ +EIYE+QHVRLQ EVSCISIP ++ + K
Sbjct: 686 SAYQYEIYEMQHVRLQNEVSCISIPHKHFDKK 717


>ref|XP_006296833.1| hypothetical protein CARUB_v10012818mg [Capsella rubella]
           gi|482565542|gb|EOA29731.1| hypothetical protein
           CARUB_v10012818mg [Capsella rubella]
          Length = 1368

 Score =  131 bits (329), Expect = 1e-28
 Identities = 57/92 (61%), Positives = 77/92 (83%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           ++LC+P++ AH +GIP+S PFFS W P N++IS+GAVGQNL++V+TSNPCFL ILG++S+
Sbjct: 585 IRLCMPTTDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGIKSL 644

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSK 278
           S+ + EIYEIQ V LQYEVSCIS+P +N   K
Sbjct: 645 SSQSCEIYEIQRVTLQYEVSCISVPQKNIGKK 676


>ref|XP_006577114.1| PREDICTED: splicing factor 3B subunit 3-like isoform X3 [Glycine
           max]
          Length = 1226

 Score =  128 bits (322), Expect = 7e-28
 Identities = 58/99 (58%), Positives = 78/99 (78%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           VKLCLP+ +AH EGIPLS P  + WSP+N++IS+GAVG N ++V+TSNPCFL+ILGVR +
Sbjct: 586 VKLCLPTKAAHSEGIPLSSPICTSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLL 645

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEVT 299
           SA+ +EIYE+QH+ LQ E+SCISIP +    K   S ++
Sbjct: 646 SAYQYEIYEMQHLVLQNELSCISIPGQEIEQKQSNSSIS 684


>ref|XP_006577113.1| PREDICTED: splicing factor 3B subunit 3-like isoform X2 [Glycine
           max]
          Length = 1373

 Score =  128 bits (322), Expect = 7e-28
 Identities = 58/99 (58%), Positives = 78/99 (78%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           VKLCLP+ +AH EGIPLS P  + WSP+N++IS+GAVG N ++V+TSNPCFL+ILGVR +
Sbjct: 586 VKLCLPTKAAHSEGIPLSSPICTSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLL 645

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEVT 299
           SA+ +EIYE+QH+ LQ E+SCISIP +    K   S ++
Sbjct: 646 SAYQYEIYEMQHLVLQNELSCISIPGQEIEQKQSNSSIS 684


>ref|XP_006577112.1| PREDICTED: splicing factor 3B subunit 3-like isoform X1 [Glycine
           max]
          Length = 1387

 Score =  128 bits (322), Expect = 7e-28
 Identities = 58/99 (58%), Positives = 78/99 (78%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           VKLCLP+ +AH EGIPLS P  + WSP+N++IS+GAVG N ++V+TSNPCFL+ILGVR +
Sbjct: 586 VKLCLPTKAAHSEGIPLSSPICTSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLL 645

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEVT 299
           SA+ +EIYE+QH+ LQ E+SCISIP +    K   S ++
Sbjct: 646 SAYQYEIYEMQHLVLQNELSCISIPGQEIEQKQSNSSIS 684


>ref|XP_002882757.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297328597|gb|EFH59016.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1384

 Score =  128 bits (321), Expect = 9e-28
 Identities = 57/92 (61%), Positives = 76/92 (82%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           ++LC+P+  AH +GIP+S PFFS W P+N++IS+GAVGQNL++V+TSNPCFL ILGV+S+
Sbjct: 588 IRLCMPTMDAHSDGIPVSSPFFSSWFPDNVSISLGAVGQNLIVVSTSNPCFLSILGVKSV 647

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSK 278
           S+   EIYEIQ V LQYEVSCIS+P ++   K
Sbjct: 648 SSQCCEIYEIQRVTLQYEVSCISVPQKHIGKK 679


>gb|AAF23212.1|AC016795_25 hypothetical protein [Arabidopsis thaliana]
           gi|10998135|dbj|BAB03106.1| unnamed protein product
           [Arabidopsis thaliana]
          Length = 1331

 Score =  127 bits (320), Expect = 1e-27
 Identities = 57/92 (61%), Positives = 75/92 (81%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           ++LC+P+  AH +GIP+S PFFS W P N++IS+GAVGQNL++V+TSNPCFL ILGV+S+
Sbjct: 563 IRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGVKSV 622

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSK 278
           S+   EIYEIQ V LQYEVSCIS+P ++   K
Sbjct: 623 SSQCCEIYEIQRVTLQYEVSCISVPQKHIGKK 654


>ref|NP_187802.2| Cleavage and polyadenylation specificity factor (CPSF) A subunit
           protein [Arabidopsis thaliana]
           gi|29824376|gb|AAP04148.1| unknown protein [Arabidopsis
           thaliana] gi|110739103|dbj|BAF01468.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332641608|gb|AEE75129.1| Cleavage and polyadenylation
           specificity factor (CPSF) A subunit protein [Arabidopsis
           thaliana]
          Length = 1379

 Score =  127 bits (320), Expect = 1e-27
 Identities = 57/92 (61%), Positives = 75/92 (81%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           ++LC+P+  AH +GIP+S PFFS W P N++IS+GAVGQNL++V+TSNPCFL ILGV+S+
Sbjct: 591 IRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGVKSV 650

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSK 278
           S+   EIYEIQ V LQYEVSCIS+P ++   K
Sbjct: 651 SSQCCEIYEIQRVTLQYEVSCISVPQKHIGKK 682


>ref|NP_850565.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
           protein [Arabidopsis thaliana]
           gi|332641609|gb|AEE75130.1| Cleavage and polyadenylation
           specificity factor (CPSF) A subunit protein [Arabidopsis
           thaliana]
          Length = 1329

 Score =  127 bits (320), Expect = 1e-27
 Identities = 57/92 (61%), Positives = 75/92 (81%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           ++LC+P+  AH +GIP+S PFFS W P N++IS+GAVGQNL++V+TSNPCFL ILGV+S+
Sbjct: 533 IRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGVKSV 592

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSK 278
           S+   EIYEIQ V LQYEVSCIS+P ++   K
Sbjct: 593 SSQCCEIYEIQRVTLQYEVSCISVPQKHIGKK 624


>ref|XP_006351359.1| PREDICTED: pre-mRNA-splicing factor prp12-like isoform X2 [Solanum
           tuberosum]
          Length = 1321

 Score =  127 bits (318), Expect = 2e-27
 Identities = 56/99 (56%), Positives = 79/99 (79%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           V+LC+P ++AHP+GI  + P F+ WSP+NMTIS+GAVG NL++VATS+PC+L+ILG+R+I
Sbjct: 587 VRLCVPIAAAHPDGIDSASPTFTSWSPDNMTISLGAVGPNLIVVATSSPCYLFILGIRTI 646

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEVT 299
           SA ++EIY++QHV+LQ E+SCISIP R        S  +
Sbjct: 647 SAHHYEIYQMQHVKLQDELSCISIPQRRLEQTSFISRTS 685


>ref|XP_006351358.1| PREDICTED: pre-mRNA-splicing factor prp12-like isoform X1 [Solanum
           tuberosum]
          Length = 1393

 Score =  127 bits (318), Expect = 2e-27
 Identities = 56/99 (56%), Positives = 79/99 (79%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           V+LC+P ++AHP+GI  + P F+ WSP+NMTIS+GAVG NL++VATS+PC+L+ILG+R+I
Sbjct: 587 VRLCVPIAAAHPDGIDSASPTFTSWSPDNMTISLGAVGPNLIVVATSSPCYLFILGIRTI 646

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEVT 299
           SA ++EIY++QHV+LQ E+SCISIP R        S  +
Sbjct: 647 SAHHYEIYQMQHVKLQDELSCISIPQRRLEQTSFISRTS 685


>gb|ESW35025.1| hypothetical protein PHAVU_001G200200g [Phaseolus vulgaris]
          Length = 1362

 Score =  127 bits (318), Expect = 2e-27
 Identities = 58/99 (58%), Positives = 78/99 (78%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           VKLCLP+ +AH EGIPLS P  + WSP+N++IS+GAVG N V+V+TSNPCFL+ILGVR +
Sbjct: 577 VKLCLPTKAAHSEGIPLSSPISTSWSPDNVSISLGAVGHNFVVVSTSNPCFLFILGVRFL 636

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEVT 299
           S++ +EIYE+QH+ LQ E+SCISIP +    K   S ++
Sbjct: 637 SSYEYEIYEMQHLVLQNELSCISIPGQEIEQKPSNSSIS 675


>ref|XP_003638105.1| Pre-mRNA-splicing factor rse1 [Medicago truncatula]
           gi|355504040|gb|AES85243.1| Pre-mRNA-splicing factor
           rse1 [Medicago truncatula]
          Length = 1370

 Score =  126 bits (317), Expect = 3e-27
 Identities = 57/99 (57%), Positives = 73/99 (73%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           VKLCLP+   H EGIPLS P  + W P+N+ IS+GAVG N ++V+TSNPCFL+ILGVR +
Sbjct: 584 VKLCLPTKDGHSEGIPLSSPICTSWYPDNLNISLGAVGHNFIVVSTSNPCFLFILGVRML 643

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEVT 299
           SA+ +EIYE+QH+ LQ EVSCISIP      K   S ++
Sbjct: 644 SAYQYEIYEMQHLELQNEVSCISIPRTKYGKKRSNSSIS 682


>ref|XP_003638096.1| DNA damage-binding protein, partial [Medicago truncatula]
           gi|355504031|gb|AES85234.1| DNA damage-binding protein,
           partial [Medicago truncatula]
          Length = 822

 Score =  126 bits (317), Expect = 3e-27
 Identities = 57/99 (57%), Positives = 73/99 (73%)
 Frame = +3

Query: 3   VKLCLPSSSAHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSI 182
           VKLCLP+   H EGIPLS P  + W P+N+ IS+GAVG N ++V+TSNPCFL+ILGVR +
Sbjct: 584 VKLCLPTKDGHSEGIPLSSPICTSWYPDNLNISLGAVGHNFIVVSTSNPCFLFILGVRML 643

Query: 183 SAFNFEIYEIQHVRLQYEVSCISIPLRNANSKHLASEVT 299
           SA+ +EIYE+QH+ LQ EVSCISIP      K   S ++
Sbjct: 644 SAYQYEIYEMQHLELQNEVSCISIPRTKYGKKRSNSSIS 682