BLASTX nr result
ID: Zingiber24_contig00050633
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00050633
(339 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 105 6e-21
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc... 100 2e-19
dbj|BAA22288.1| polyprotein [Oryza australiensis] 100 3e-19
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 97 2e-18
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group] 96 6e-18
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group] 95 8e-18
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 93 4e-17
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 91 2e-16
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 88 1e-15
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 87 3e-15
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc... 86 4e-15
gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subc... 86 5e-15
gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japoni... 84 1e-14
emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group] gi... 83 4e-14
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc... 82 7e-14
ref|XP_006579312.1| PREDICTED: uncharacterized protein LOC102665... 82 1e-13
gb|AAD17357.1| contains similarity to retrovirus-related polypro... 81 2e-13
gb|EMS60921.1| hypothetical protein TRIUR3_17552 [Triticum urartu] 78 1e-12
gb|EMS67284.1| Spastin [Triticum urartu] 76 4e-12
gb|EMT33737.1| hypothetical protein F775_00472 [Aegilops tauschii] 75 1e-11
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 105 bits (262), Expect = 6e-21
Identities = 55/113 (48%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTF 181
+R ++DKLGPKSDKCYF+GYPKETKGYYFY P+ +KV V + G FLER+F+S+ TSGS
Sbjct: 316 KRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAFLEREFLSKGTSGSKV 375
Query: 182 DLEEVQDANNSTDASM-EIELEPQSVVNDEIVPQGVKEQQPVQVNLPLRRSDR 337
LEEV++ S E +L+ + VV +P+ V +RRS+R
Sbjct: 376 LLEEVREPQGDVPTSQEEHQLDLRRVV------------EPILVEPEVRRSER 416
>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 100 bits (250), Expect = 2e-19
Identities = 58/112 (51%), Positives = 71/112 (63%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTF 181
+R SDKL PKSDKC+F+GY KETKGYYFY + KV VA+ GVFLE++F+SRK SGS
Sbjct: 368 KRLQSDKLTPKSDKCFFVGYHKETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMV 427
Query: 182 DLEEVQDANNSTDASMEIELEPQSVVNDEIVPQGVKEQQPVQVNLPLRRSDR 337
LEE+Q+ + S + + Q VV V Q V E PV L RRS R
Sbjct: 428 RLEEIQETPENASTSTQPQQAEQDVVQQ--VEQVVVE--PVVEALASRRSKR 475
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 99.8 bits (247), Expect = 3e-19
Identities = 49/85 (57%), Positives = 61/85 (71%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTF 181
+R SDKL PKSDKC+ +GYPKETKGYYFY Q KV VA+ GVFLE++F+SR+ SG
Sbjct: 672 KRLQSDKLTPKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRV 731
Query: 182 DLEEVQDANNSTDASMEIELEPQSV 256
LEEVQ+ + A+ E + E QSV
Sbjct: 732 HLEEVQETPETVSATTEPQQEDQSV 756
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 97.1 bits (240), Expect = 2e-18
Identities = 55/112 (49%), Positives = 71/112 (63%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTF 181
+R SDKL PKS+KC+F+GYPKETKGYY Y + KV VA+ GVFL+++F+SRK SGS
Sbjct: 1148 KRLQSDKLTPKSNKCFFVGYPKETKGYYLYNREEGKVFVARHGVFLKKEFISRKDSGSIV 1207
Query: 182 DLEEVQDANNSTDASMEIELEPQSVVNDEIVPQGVKEQQPVQVNLPLRRSDR 337
LEE+Q+ + S + + Q VV V Q V E PV RRS+R
Sbjct: 1208 RLEEIQETPENASTSTQPQQAEQDVVQQ--VEQVVVE--PVVEAPASRRSER 1255
>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
Length = 873
Score = 95.5 bits (236), Expect = 6e-18
Identities = 49/105 (46%), Positives = 67/105 (63%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTF 181
+R SDKL PKSDKC+F+GYPKETKGYYFY + KV VA+ VFLE++F+SRK SGS
Sbjct: 466 KRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHSVFLEKEFISRKDSGSMV 525
Query: 182 DLEEVQDANNSTDASMEIELEPQSVVNDEIVPQGVKEQQPVQVNL 316
EE+Q+ + S + + E ++V Q K++ V N+
Sbjct: 526 RPEEIQETPENASTSTQPQAE------QDVVQQVFKKKTDVDGNV 564
>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]
Length = 746
Score = 95.1 bits (235), Expect = 8e-18
Identities = 50/112 (44%), Positives = 70/112 (62%), Gaps = 2/112 (1%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTF 181
+R SDKL PKSDKC+F+GYPKE KGYYFY + KV +A+ GVFL ++F+SRK SGS
Sbjct: 302 KRLQSDKLTPKSDKCFFVGYPKEKKGYYFYNREEGKVFIARHGVFLGKEFISRKDSGSMV 361
Query: 182 DLEEVQDANNSTDASMEIELEPQSVVN--DEIVPQGVKEQQPVQVNLPLRRS 331
LEE+Q+ + S + + Q V +++V + V E Q +RR+
Sbjct: 362 GLEEIQETPENVSRSTQPQQAEQDVAQQVEQVVVEPVVEALASQRFERIRRT 413
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 92.8 bits (229), Expect = 4e-17
Identities = 54/112 (48%), Positives = 69/112 (61%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTF 181
+R SDKL PKSDK +F+GYPKETKGYYFY + KV VA+ VFLE++F+S K SG
Sbjct: 343 KRLQSDKLTPKSDKYFFVGYPKETKGYYFYNREEDKVFVARHDVFLEKEFISTKDSGIMV 402
Query: 182 DLEEVQDANNSTDASMEIELEPQSVVNDEIVPQGVKEQQPVQVNLPLRRSDR 337
LEE+Q+ + S + + + Q VV V Q V E PV RRS+R
Sbjct: 403 RLEEIQETPKNASTSTQPQQDEQDVVQQ--VEQVVVE--PVVEAPASRRSER 450
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 90.9 bits (224), Expect = 2e-16
Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = +2
Query: 11 VSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTFDLE 190
+ +KL PKSDKC+FIGYP+ETKGYYFY + KV VA+ GVFLE++F+S+ SG LE
Sbjct: 359 ILNKLTPKSDKCFFIGYPRETKGYYFYNREEDKVFVARNGVFLEKEFLSKGVSGRKVRLE 418
Query: 191 EVQDANNSTDASMEIELEPQSVVND-EIVPQGVKEQQPVQVNLPLR 325
E+++ + + E L+ Q VV + P + ++P Q LP R
Sbjct: 419 EIRETSENVSTPTEHLLDEQIVVEPVDKAPAPRRSKRPRQ--LPTR 462
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 87.8 bits (216), Expect = 1e-15
Identities = 45/93 (48%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Frame = +2
Query: 2 RRQVSDKLGPKS--DKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGS 175
+R SDKL PKS DKC+F+GYPKETKGYYFY + KV VA+ GVFLE+ F+SRK SGS
Sbjct: 221 KRLQSDKLTPKSKSDKCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKKFISRKDSGS 280
Query: 176 TFDLEEVQDANNSTDASMEIELEPQSVVNDEIV 274
E + A ++ + + VV + +V
Sbjct: 281 METPENASTSTQPQQAEQDVVQQVEQVVVEPVV 313
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 86.7 bits (213), Expect = 3e-15
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTF 181
+R SDKL PKSDKC+F+GYPKETKGYYFY + KV VA+ GVFLE++F+SRK GS
Sbjct: 648 KRLQSDKLTPKSDKCFFVGYPKETKGYYFYNQEEGKVFVARHGVFLEKEFISRKDIGSML 707
Query: 182 DLEEV-QDANNSTDASMEIELEPQSVVNDEIVPQGVKEQQPV 304
+D TD + + +V +G ++ Q V
Sbjct: 708 WKHRFREDPKKKTDVDGNVH-----IYKARLVAKGFRQIQGV 744
>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 86.3 bits (212), Expect = 4e-15
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGS 175
+R SDKL PKSDKC+F+GYPKETKGYYFY + KV VA+ GVFLE++F+ RK SGS
Sbjct: 468 KRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKEFILRKNSGS 525
>gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 562
Score = 85.9 bits (211), Expect = 5e-15
Identities = 42/96 (43%), Positives = 57/96 (59%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTF 181
+R SDKL PKSDKC+F+GYPKETKGYYFY + KV VA+ VFL+++F+SRK SGS
Sbjct: 63 KRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHSVFLKKEFISRKDSGSML 122
Query: 182 DLEEVQDANNSTDASMEIELEPQSVVNDEIVPQGVK 289
+ + ++ EP + + P K
Sbjct: 123 WKHRLHEGPKEYGVHLQDNDEPTTYEESMVGPDSEK 158
>gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|41393192|gb|AAS01915.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 547
Score = 84.3 bits (207), Expect = 1e-14
Identities = 38/58 (65%), Positives = 47/58 (81%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGS 175
+R SDKL PKSDKC+F+GYPKETKGYYFY + KV VA+ VFL+++F+SRK SGS
Sbjct: 63 KRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHSVFLKKEFISRKDSGS 120
>emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group]
gi|38347202|emb|CAD40526.2| OSJNBa0023J03.14 [Oryza
sativa Japonica Group] gi|116308930|emb|CAH66059.1|
OSIGBa0125J07.8 [Oryza sativa Indica Group]
gi|116309043|emb|CAH66155.1| OSIGBa0113B06.1 [Oryza
sativa Indica Group]
Length = 704
Score = 82.8 bits (203), Expect = 4e-14
Identities = 38/58 (65%), Positives = 46/58 (79%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGS 175
+R SDKL KSDKC+F+GYPKETKGYYFY + KV VA+ VFLE++F+SRK SGS
Sbjct: 255 KRLQSDKLTTKSDKCFFVGYPKETKGYYFYNRKEGKVFVARHSVFLEKEFISRKDSGS 312
>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 82.0 bits (201), Expect = 7e-14
Identities = 40/60 (66%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Frame = +2
Query: 2 RRQVSDKLGPKS--DKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGS 175
+R SDKL PKS DKC+F+GYPKETKGYYFY + KV VA+ GVFLE+ F+SRK SGS
Sbjct: 221 KRLQSDKLTPKSKSDKCFFVGYPKETKGYYFYNREEGKVFVARHGVFLEKKFISRKDSGS 280
>ref|XP_006579312.1| PREDICTED: uncharacterized protein LOC102665657 [Glycine max]
Length = 334
Score = 81.6 bits (200), Expect = 1e-13
Identities = 39/76 (51%), Positives = 48/76 (63%)
Frame = +2
Query: 17 DKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTFDLEEV 196
DKL + DKC FIGYPKET GYYFY PS HKV VA+ FLER+F+ G +L+E
Sbjct: 253 DKLEARFDKCRFIGYPKETVGYYFYQPSNHKVFVARGATFLEREFLVEGNHGKEIELDET 312
Query: 197 QDANNSTDASMEIELE 244
Q N++ E+E E
Sbjct: 313 QVTNDNITQEHEMETE 328
>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] gi|7267382|emb|CAB77943.1| putative transposon
protein [Arabidopsis thaliana]
Length = 769
Score = 80.9 bits (198), Expect = 2e-13
Identities = 33/54 (61%), Positives = 43/54 (79%)
Frame = +2
Query: 2 RRQVSDKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRK 163
+R ++DKLGPKSDKCYF+GYPKETKGYYFY P+ +KV VA+ G F + F ++
Sbjct: 348 KRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVARNGAFWKESFFQKE 401
>gb|EMS60921.1| hypothetical protein TRIUR3_17552 [Triticum urartu]
Length = 419
Score = 78.2 bits (191), Expect = 1e-12
Identities = 35/60 (58%), Positives = 47/60 (78%)
Frame = +2
Query: 17 DKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTFDLEEV 196
+KL PKS+KC FIGYPKET GY FY+ S+ K+ VAK G FLE++F+S++ SG +L+EV
Sbjct: 75 EKLEPKSEKCVFIGYPKETVGYTFYLRSEGKIFVAKNGSFLEKEFLSKEISGRKVELDEV 134
>gb|EMS67284.1| Spastin [Triticum urartu]
Length = 1541
Score = 76.3 bits (186), Expect = 4e-12
Identities = 36/60 (60%), Positives = 45/60 (75%)
Frame = +2
Query: 17 DKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTFDLEEV 196
DKL PKS+KC FIGYPKET GY FY S K+ VAK G FLE++F+S++ SG +L+EV
Sbjct: 478 DKLKPKSEKCVFIGYPKETIGYTFYHRSGGKIFVAKNGSFLEKEFLSKQVSGRKVELDEV 537
>gb|EMT33737.1| hypothetical protein F775_00472 [Aegilops tauschii]
Length = 1111
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/72 (50%), Positives = 49/72 (68%)
Frame = +2
Query: 17 DKLGPKSDKCYFIGYPKETKGYYFYIPSQHKVVVAKTGVFLERDFVSRKTSGSTFDLEEV 196
DKL PKS+KC FIGYPKET GY FY S+ K+ VAKTG FLE++ + ++ SG +L+EV
Sbjct: 649 DKLEPKSEKCLFIGYPKETVGYTFYHRSKGKIFVAKTGSFLEKESLLKEVSGRKVELDEV 708
Query: 197 QDANNSTDASME 232
++ + E
Sbjct: 709 MLVDHDEPTNYE 720