BLASTX nr result
ID: Zingiber24_contig00050014
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00050014
(459 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXC32781.1| hypothetical protein L484_019895 [Morus notabilis] 75 7e-12
ref|XP_006450596.1| hypothetical protein CICLE_v10010742mg [Citr... 75 9e-12
ref|XP_006408981.1| hypothetical protein EUTSA_v10001958mg [Eutr... 74 2e-11
ref|XP_006481440.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-11
ref|XP_006476161.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-11
ref|XP_006360941.1| PREDICTED: pentatricopeptide repeat-containi... 74 3e-11
ref|XP_002516590.1| pentatricopeptide repeat-containing protein,... 74 3e-11
ref|XP_006299486.1| hypothetical protein CARUB_v10015651mg [Caps... 73 3e-11
ref|XP_002884209.1| pentatricopeptide repeat-containing protein ... 72 6e-11
ref|XP_004247963.1| PREDICTED: pentatricopeptide repeat-containi... 72 8e-11
ref|XP_004292867.1| PREDICTED: pentatricopeptide repeat-containi... 72 1e-10
gb|EMJ28472.1| hypothetical protein PRUPE_ppa017736mg [Prunus pe... 71 2e-10
ref|XP_002324255.1| pentatricopeptide repeat-containing family p... 70 2e-10
ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containi... 70 3e-10
ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containi... 67 2e-09
ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi... 67 2e-09
ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis th... 67 2e-09
emb|CBI20961.3| unnamed protein product [Vitis vinifera] 66 6e-09
ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containi... 66 6e-09
ref|XP_004501200.1| PREDICTED: pentatricopeptide repeat-containi... 65 9e-09
>gb|EXC32781.1| hypothetical protein L484_019895 [Morus notabilis]
Length = 549
Score = 75.5 bits (184), Expect = 7e-12
Identities = 36/60 (60%), Positives = 49/60 (81%)
Frame = +2
Query: 2 DAVAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSRT 181
+ V+K+RKL+RS +MKKTPGCSLIEVNNVV+EFV+GD++ P DL+ +L+LL S + T
Sbjct: 471 EGVSKIRKLIRSKSMKKTPGCSLIEVNNVVEEFVSGDDTKPCSKDLFSMLELLVSHQNVT 530
>ref|XP_006450596.1| hypothetical protein CICLE_v10010742mg [Citrus clementina]
gi|557553822|gb|ESR63836.1| hypothetical protein
CICLE_v10010742mg [Citrus clementina]
Length = 605
Score = 75.1 bits (183), Expect = 9e-12
Identities = 36/75 (48%), Positives = 53/75 (70%)
Frame = +2
Query: 8 VAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSRTQI 187
V++MRKL+RS +MKKTPGCSLIEVNN VQEFV+GD++ P D++ +L+LL+ R +
Sbjct: 471 VSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKD 530
Query: 188 IRTLSTEQMKLMDLH 232
+ + E ++ H
Sbjct: 531 VIDIMYEDIETKHNH 545
>ref|XP_006408981.1| hypothetical protein EUTSA_v10001958mg [Eutrema salsugineum]
gi|557110137|gb|ESQ50434.1| hypothetical protein
EUTSA_v10001958mg [Eutrema salsugineum]
Length = 531
Score = 74.3 bits (181), Expect = 2e-11
Identities = 34/52 (65%), Positives = 44/52 (84%)
Frame = +2
Query: 8 VAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLS 163
V++MRKL+R+ NMK+TPGCSLIEVNNVVQEFVAGD+S P + ++ +L L S
Sbjct: 463 VSRMRKLIRNGNMKRTPGCSLIEVNNVVQEFVAGDDSKPFWTEVSSVLQLFS 514
>ref|XP_006481440.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like, partial [Citrus sinensis]
Length = 436
Score = 73.9 bits (180), Expect = 2e-11
Identities = 35/69 (50%), Positives = 51/69 (73%)
Frame = +2
Query: 8 VAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSRTQI 187
V++MRKL+RS +MKKTPGCSLIEVNN VQEFV+GD++ P D++ +L+LL+ R +
Sbjct: 366 VSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKD 425
Query: 188 IRTLSTEQM 214
+ + E +
Sbjct: 426 VIDIMYEDI 434
>ref|XP_006476161.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Citrus sinensis]
Length = 541
Score = 73.9 bits (180), Expect = 2e-11
Identities = 35/69 (50%), Positives = 51/69 (73%)
Frame = +2
Query: 8 VAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSRTQI 187
V++MRKL+RS +MKKTPGCSLIEVNN VQEFV+GD++ P D++ +L+LL+ R +
Sbjct: 471 VSRMRKLIRSKSMKKTPGCSLIEVNNEVQEFVSGDDTKPFLKDIFWLLELLALHQDRAKD 530
Query: 188 IRTLSTEQM 214
+ + E +
Sbjct: 531 VIDIMYEDI 539
>ref|XP_006360941.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Solanum tuberosum]
Length = 536
Score = 73.6 bits (179), Expect = 3e-11
Identities = 33/59 (55%), Positives = 47/59 (79%)
Frame = +2
Query: 2 DAVAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSR 178
D V++MRKL+RS +MKKTPGCSLIE+N++VQEF++GD S P D+ +L+LL+ S+
Sbjct: 464 DGVSRMRKLIRSKSMKKTPGCSLIEINSLVQEFLSGDNSKPFSKDIHEVLELLALHQSK 522
>ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544410|gb|EEF45931.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 517
Score = 73.6 bits (179), Expect = 3e-11
Identities = 35/54 (64%), Positives = 45/54 (83%)
Frame = +2
Query: 2 DAVAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLS 163
D V++MRKLVRS MKKTPGCSLIEVNNV QEFV+GD+S P +++ +L+LL+
Sbjct: 447 DDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFVSGDDSKPYSKEIFWLLELLA 500
>ref|XP_006299486.1| hypothetical protein CARUB_v10015651mg [Capsella rubella]
gi|482568195|gb|EOA32384.1| hypothetical protein
CARUB_v10015651mg [Capsella rubella]
Length = 534
Score = 73.2 bits (178), Expect = 3e-11
Identities = 32/53 (60%), Positives = 44/53 (83%)
Frame = +2
Query: 8 VAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSS 166
V+++RK++R+ NMKKTPGCSLIEVNN+VQEFVAGD S P + ++ +L L +S
Sbjct: 463 VSRLRKMIRNKNMKKTPGCSLIEVNNIVQEFVAGDNSKPFWTEISIVLQLFTS 515
>ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297330049|gb|EFH60468.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 534
Score = 72.4 bits (176), Expect = 6e-11
Identities = 32/53 (60%), Positives = 43/53 (81%)
Frame = +2
Query: 8 VAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSS 166
V+++RK++R NMKKTPGCSLIEVNN+VQEFVAGD S P + ++ +L L +S
Sbjct: 463 VSRLRKIIRKENMKKTPGCSLIEVNNIVQEFVAGDNSKPFWTEISLVLQLFTS 515
>ref|XP_004247963.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Solanum lycopersicum]
Length = 534
Score = 72.0 bits (175), Expect = 8e-11
Identities = 32/59 (54%), Positives = 46/59 (77%)
Frame = +2
Query: 2 DAVAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSR 178
D V++MRK +RS +MKKTPGCSLIE+N++VQEF++GD S P D+ +L+LL+ S+
Sbjct: 462 DGVSRMRKFIRSKSMKKTPGCSLIEINSLVQEFLSGDNSKPFSKDIHEVLELLALHQSK 520
>ref|XP_004292867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Fragaria vesca subsp. vesca]
Length = 544
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +2
Query: 8 VAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELS 175
V++MRKL+RS +MKKTPGCSLIEVNNVV EFV+GD++ P D++ +L LL + S
Sbjct: 471 VSRMRKLIRSKSMKKTPGCSLIEVNNVVLEFVSGDDTKPFAKDIFSMLQLLVAHQS 526
>gb|EMJ28472.1| hypothetical protein PRUPE_ppa017736mg [Prunus persica]
Length = 544
Score = 70.9 bits (172), Expect = 2e-10
Identities = 32/51 (62%), Positives = 44/51 (86%)
Frame = +2
Query: 8 VAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLL 160
V++MRKL+RS +MK+TPGCSLIEVNNVV EFV+G++S P D++ +L+LL
Sbjct: 471 VSRMRKLIRSKSMKRTPGCSLIEVNNVVMEFVSGNDSKPFAKDIFSMLELL 521
>ref|XP_002324255.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222865689|gb|EEF02820.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 547
Score = 70.5 bits (171), Expect = 2e-10
Identities = 33/60 (55%), Positives = 47/60 (78%)
Frame = +2
Query: 2 DAVAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSRT 181
D V++MRKL++S +MKKTPG SLI++NNVVQEFV+ D+S P D++ +L+LL+S T
Sbjct: 471 DGVSRMRKLIKSKSMKKTPGSSLIDINNVVQEFVSWDDSKPFSRDIFWLLELLTSHQDTT 530
>ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 70.1 bits (170), Expect = 3e-10
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +2
Query: 8 VAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELS 175
VA RK +RS +M+KTPGCSLIEV+NVVQEFVAG++ P F L +LD+L+S+L+
Sbjct: 473 VANTRKAIRSRSMRKTPGCSLIEVDNVVQEFVAGEDLKPEFGGLSGVLDILASQLA 528
>ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/61 (54%), Positives = 46/61 (75%)
Frame = +2
Query: 2 DAVAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSRT 181
+ V+ +RKL+RS +KKTPGCSLIEVNN+VQEFV+GD+S P +++ IL L+ RT
Sbjct: 458 EGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSGDDSKPFSQEVFWILKGLTLHQIRT 517
Query: 182 Q 184
+
Sbjct: 518 K 518
>ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 67.0 bits (162), Expect = 2e-09
Identities = 31/53 (58%), Positives = 42/53 (79%)
Frame = +2
Query: 2 DAVAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLL 160
D V++MRKL+RS +MKKTPGCS IEV+N+VQEF +GD+S P ++ +L LL
Sbjct: 469 DGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLL 521
>ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g20540 gi|4586036|gb|AAD25654.1| unknown protein
[Arabidopsis thaliana] gi|67633530|gb|AAY78689.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana] gi|330251931|gb|AEC07025.1| mitochondrial
editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 67.0 bits (162), Expect = 2e-09
Identities = 30/53 (56%), Positives = 43/53 (81%)
Frame = +2
Query: 8 VAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSS 166
V+++RK++R+ NMKKTPG SLIEVNN+VQEFV+GD S P + ++ +L L +S
Sbjct: 463 VSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFTS 515
>emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 65.9 bits (159), Expect = 6e-09
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +2
Query: 2 DAVAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSR 178
D V++MRKL+RS +MKKTPGCS IEV+N+VQEF +GD+S P + +L LL S+
Sbjct: 485 DGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLLVMHQSK 543
>ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 65.9 bits (159), Expect = 6e-09
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +2
Query: 2 DAVAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSR 178
D V++MRKL+RS +MKKTPGCS IEV+N+VQEF +GD+S P + +L LL S+
Sbjct: 469 DGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLLVMHQSK 527
>ref|XP_004501200.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like isoform X1 [Cicer arietinum]
gi|502132029|ref|XP_004501201.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g20540-like isoform X2 [Cicer arietinum]
gi|502132032|ref|XP_004501202.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g20540-like isoform X3 [Cicer arietinum]
gi|502132034|ref|XP_004501203.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g20540-like isoform X4 [Cicer arietinum]
Length = 553
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/60 (51%), Positives = 44/60 (73%)
Frame = +2
Query: 2 DAVAKMRKLVRSMNMKKTPGCSLIEVNNVVQEFVAGDESNPLFIDLWPILDLLSSELSRT 181
+ V+ +RKL+R+ +KKTPGCS IEVNNVVQEFV+ D S P +++ IL+ L+ +RT
Sbjct: 463 EGVSNIRKLIRNKRIKKTPGCSSIEVNNVVQEFVSADNSKPFSQEVFEILEGLALHQTRT 522