BLASTX nr result
ID: Zingiber24_contig00049683
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00049683
(312 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004500668.1| PREDICTED: tRNA modification GTPase MnmE-lik... 69 6e-10
ref|XP_004500604.1| PREDICTED: tRNA modification GTPase MnmE-lik... 69 6e-10
ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vi... 69 6e-10
ref|XP_003527915.1| PREDICTED: probable tRNA modification GTPase... 68 1e-09
ref|NP_001149416.1| LOC100283042 [Zea mays] gi|195627080|gb|ACG3... 67 2e-09
ref|XP_006578331.1| PREDICTED: probable tRNA modification GTPase... 66 5e-09
ref|XP_006578330.1| PREDICTED: probable tRNA modification GTPase... 66 5e-09
ref|XP_003522812.2| PREDICTED: probable tRNA modification GTPase... 66 5e-09
ref|XP_003638789.1| tRNA modification GTPase mnmE [Medicago trun... 65 1e-08
gb|EOY16078.1| TRNA modification GTPase [Theobroma cacao] 64 2e-08
ref|XP_006472646.1| PREDICTED: probable tRNA modification GTPase... 64 3e-08
ref|XP_006472645.1| PREDICTED: probable tRNA modification GTPase... 64 3e-08
gb|ESW08216.1| hypothetical protein PHAVU_009G028600g [Phaseolus... 64 3e-08
ref|XP_006434032.1| hypothetical protein CICLE_v10003846mg [Citr... 64 3e-08
dbj|BAC98601.1| putative tRNA modification GTPase trmE [Oryza sa... 63 5e-08
ref|XP_004973401.1| PREDICTED: LOW QUALITY PROTEIN: probable tRN... 62 6e-08
ref|XP_002444316.1| hypothetical protein SORBIDRAFT_07g020060 [S... 62 6e-08
ref|XP_002513878.1| gtpase mss1/trme, putative [Ricinus communis... 62 6e-08
gb|AFW62152.1| tRNA modification GTPase trmE [Zea mays] 61 1e-07
ref|XP_006354017.1| PREDICTED: probable tRNA modification GTPase... 60 3e-07
>ref|XP_004500668.1| PREDICTED: tRNA modification GTPase MnmE-like [Cicer arietinum]
Length = 188
Score = 68.9 bits (167), Expect = 6e-10
Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Frame = +2
Query: 116 SRLSTEDTHQ---IVTKDERLRTEDGTALGWGTIVAIVTSMGGGPAAVGIVRLSGPTAVD 286
SR S+ + + +V KDER+ E+ + TI AIVTS+GG PAAVGIVRLSGP+AV
Sbjct: 50 SRASSTNNYSYKVVVKKDERVENENTDVVNSTTIAAIVTSLGGPPAAVGIVRLSGPSAVS 109
Query: 287 VAARVFHP 310
+A RVF P
Sbjct: 110 IACRVFRP 117
>ref|XP_004500604.1| PREDICTED: tRNA modification GTPase MnmE-like [Cicer arietinum]
Length = 546
Score = 68.9 bits (167), Expect = 6e-10
Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Frame = +2
Query: 116 SRLSTEDTHQ---IVTKDERLRTEDGTALGWGTIVAIVTSMGGGPAAVGIVRLSGPTAVD 286
SR S+ + + +V KDER+ E+ + TI AIVTS+GG PAAVGIVRLSGP+AV
Sbjct: 50 SRASSTNNYSYKVVVKKDERVENENTDVVNSTTIAAIVTSLGGPPAAVGIVRLSGPSAVS 109
Query: 287 VAARVFHP 310
+A RVF P
Sbjct: 110 IACRVFRP 117
>ref|XP_002285809.1| PREDICTED: tRNA modification GTPase MnmE [Vitis vinifera]
gi|302141924|emb|CBI19127.3| unnamed protein product
[Vitis vinifera]
Length = 571
Score = 68.9 bits (167), Expect = 6e-10
Identities = 44/85 (51%), Positives = 53/85 (62%), Gaps = 9/85 (10%)
Frame = +2
Query: 83 KTLFLHSKTLVSRL--STEDTHQIVTKDERLRTE-------DGTALGWGTIVAIVTSMGG 235
K HSKTLV L + DT ++ KDERL + +GT+ TI AIVTS+GG
Sbjct: 52 KPYHTHSKTLVPHLHLTPNDTTLVLKKDERLGSRSVNQEHIEGTSTT--TIAAIVTSLGG 109
Query: 236 GPAAVGIVRLSGPTAVDVAARVFHP 310
P+AVGIVRLSGP AV + ARVF P
Sbjct: 110 PPSAVGIVRLSGPEAVAIVARVFRP 134
>ref|XP_003527915.1| PREDICTED: probable tRNA modification GTPase MnmE-like [Glycine
max]
Length = 548
Score = 67.8 bits (164), Expect = 1e-09
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Frame = +2
Query: 101 SKTLVSRLSTEDTHQIVTKDERLRTE---DGTALGWGTIVAIVTSMGGGPAAVGIVRLSG 271
S+T+ SR S+++ + ++ KDERL T D A G TI AIVTS+GG PAAVGIVRLSG
Sbjct: 49 SRTVKSRASSDNYNLVLKKDERLGTGECVDEVASGT-TIAAIVTSVGGPPAAVGIVRLSG 107
Query: 272 PTAVDVAARVFHP 310
P AV + R+F P
Sbjct: 108 PGAVSIVGRLFRP 120
>ref|NP_001149416.1| LOC100283042 [Zea mays] gi|195627080|gb|ACG35370.1| tRNA
modification GTPase trmE [Zea mays]
Length = 546
Score = 67.4 bits (163), Expect = 2e-09
Identities = 44/86 (51%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Frame = +2
Query: 74 SFPKTLFLHSKTLV----SRLSTEDTHQIVTKDERLRTEDGTALGWG---TIVAIVTSMG 232
S P+TL + TLV RL + ++ +LR +DG+ G G TI AIVTS+G
Sbjct: 32 SSPRTLAVRVDTLVLPGDERLPSPSPPRL---PNQLRPDDGSGGGGGAPSTIAAIVTSLG 88
Query: 233 GGPAAVGIVRLSGPTAVDVAARVFHP 310
GGPAAVGIVR+SGP AV VA RVF P
Sbjct: 89 GGPAAVGIVRISGPDAVAVADRVFRP 114
>ref|XP_006578331.1| PREDICTED: probable tRNA modification GTPase MnmE-like isoform X3
[Glycine max]
Length = 437
Score = 65.9 bits (159), Expect = 5e-09
Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Frame = +2
Query: 101 SKTLVSRLSTEDTHQIVTK-DERLRTED--GTALGWGTIVAIVTSMGGGPAAVGIVRLSG 271
S+T+ SR +E+ + +V K DERL + G TI AIVTS+GG PAAVGIVRLSG
Sbjct: 47 SRTVKSRAGSENYNNLVLKKDERLGAGECVGEVGSGTTIAAIVTSVGGPPAAVGIVRLSG 106
Query: 272 PTAVDVAARVFHP 310
P AV +A RVF P
Sbjct: 107 PGAVSIAGRVFRP 119
>ref|XP_006578330.1| PREDICTED: probable tRNA modification GTPase MnmE-like isoform X2
[Glycine max]
Length = 443
Score = 65.9 bits (159), Expect = 5e-09
Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Frame = +2
Query: 101 SKTLVSRLSTEDTHQIVTK-DERLRTED--GTALGWGTIVAIVTSMGGGPAAVGIVRLSG 271
S+T+ SR +E+ + +V K DERL + G TI AIVTS+GG PAAVGIVRLSG
Sbjct: 47 SRTVKSRAGSENYNNLVLKKDERLGAGECVGEVGSGTTIAAIVTSVGGPPAAVGIVRLSG 106
Query: 272 PTAVDVAARVFHP 310
P AV +A RVF P
Sbjct: 107 PGAVSIAGRVFRP 119
>ref|XP_003522812.2| PREDICTED: probable tRNA modification GTPase MnmE-like isoform X1
[Glycine max]
Length = 547
Score = 65.9 bits (159), Expect = 5e-09
Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Frame = +2
Query: 101 SKTLVSRLSTEDTHQIVTK-DERLRTED--GTALGWGTIVAIVTSMGGGPAAVGIVRLSG 271
S+T+ SR +E+ + +V K DERL + G TI AIVTS+GG PAAVGIVRLSG
Sbjct: 47 SRTVKSRAGSENYNNLVLKKDERLGAGECVGEVGSGTTIAAIVTSVGGPPAAVGIVRLSG 106
Query: 272 PTAVDVAARVFHP 310
P AV +A RVF P
Sbjct: 107 PGAVSIAGRVFRP 119
>ref|XP_003638789.1| tRNA modification GTPase mnmE [Medicago truncatula]
gi|355504724|gb|AES85927.1| tRNA modification GTPase
mnmE [Medicago truncatula]
Length = 543
Score = 64.7 bits (156), Expect = 1e-08
Identities = 42/87 (48%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Frame = +2
Query: 80 PKTLFLHSKTLVSRLSTEDTHQ---IVTKDERL-------RTEDGTALGWGTIVAIVTSM 229
P+T + HS L SR+S+ + I KDERL TI AIVTS+
Sbjct: 29 PRTTWRHS-LLSSRISSSTNYSYNVITNKDERLLEQIENDNNNTNVVANSTTIAAIVTSL 87
Query: 230 GGGPAAVGIVRLSGPTAVDVAARVFHP 310
GG PAAVGIVRLSGP AV +A RVF P
Sbjct: 88 GGPPAAVGIVRLSGPHAVSIAGRVFRP 114
>gb|EOY16078.1| TRNA modification GTPase [Theobroma cacao]
Length = 564
Score = 64.3 bits (155), Expect = 2e-08
Identities = 33/54 (61%), Positives = 41/54 (75%)
Frame = +2
Query: 149 VTKDERLRTEDGTALGWGTIVAIVTSMGGGPAAVGIVRLSGPTAVDVAARVFHP 310
V + + ++T+ T+ TI AIVTS+GG PAAVGIVRLSGPTAVD+A RVF P
Sbjct: 77 VNQGDAIKTQSSTS----TIAAIVTSLGGPPAAVGIVRLSGPTAVDIAGRVFFP 126
>ref|XP_006472646.1| PREDICTED: probable tRNA modification GTPase MnmE-like isoform X2
[Citrus sinensis]
Length = 564
Score = 63.5 bits (153), Expect = 3e-08
Identities = 37/72 (51%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Frame = +2
Query: 107 TLVSRLSTEDTHQIVTKDERLRTEDGT----ALGWGTIVAIVTSMGGGPAAVGIVRLSGP 274
TL + +D + KDERL ++G A + TI AIVTS+GG P AVGIVRLSGP
Sbjct: 58 TLNPLATPKDNTLVFKKDERLVADNGESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGP 117
Query: 275 TAVDVAARVFHP 310
AVD+ RVF P
Sbjct: 118 MAVDIVGRVFKP 129
>ref|XP_006472645.1| PREDICTED: probable tRNA modification GTPase MnmE-like isoform X1
[Citrus sinensis]
Length = 586
Score = 63.5 bits (153), Expect = 3e-08
Identities = 37/72 (51%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Frame = +2
Query: 107 TLVSRLSTEDTHQIVTKDERLRTEDGT----ALGWGTIVAIVTSMGGGPAAVGIVRLSGP 274
TL + +D + KDERL ++G A + TI AIVTS+GG P AVGIVRLSGP
Sbjct: 58 TLNPLATPKDNTLVFKKDERLVADNGESEEKAGTFSTIAAIVTSIGGPPGAVGIVRLSGP 117
Query: 275 TAVDVAARVFHP 310
AVD+ RVF P
Sbjct: 118 MAVDIVGRVFKP 129
>gb|ESW08216.1| hypothetical protein PHAVU_009G028600g [Phaseolus vulgaris]
Length = 503
Score = 63.5 bits (153), Expect = 3e-08
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Frame = +2
Query: 101 SKTLVSRLSTEDTHQIVTKDERLRTED--GTALGWGT-IVAIVTSMGGGPAAVGIVRLSG 271
S+ + S ++ +V KDERL + +G GT I AIVTS+GG PAAVGIVRLSG
Sbjct: 44 SRAVKSHAGSDSYKLVVKKDERLGAGECVDEVVGNGTTIAAIVTSLGGPPAAVGIVRLSG 103
Query: 272 PTAVDVAARVFHP 310
P AV +A RVF P
Sbjct: 104 PGAVSIAGRVFRP 116
>ref|XP_006434032.1| hypothetical protein CICLE_v10003846mg [Citrus clementina]
gi|557536154|gb|ESR47272.1| hypothetical protein
CICLE_v10003846mg [Citrus clementina]
Length = 564
Score = 63.5 bits (153), Expect = 3e-08
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Frame = +2
Query: 131 EDTHQIVTKDERLRTEDGT----ALGWGTIVAIVTSMGGGPAAVGIVRLSGPTAVDVAAR 298
+D + KDERL ++G A + TI AIVTS+GG P AVGIVRLSGP AVD+ R
Sbjct: 66 KDNKLVFKKDERLVADNGESEEKAATFRTIAAIVTSIGGPPGAVGIVRLSGPMAVDIVGR 125
Query: 299 VFHP 310
VF P
Sbjct: 126 VFKP 129
>dbj|BAC98601.1| putative tRNA modification GTPase trmE [Oryza sativa Japonica
Group]
Length = 552
Score = 62.8 bits (151), Expect = 5e-08
Identities = 32/43 (74%), Positives = 33/43 (76%)
Frame = +2
Query: 182 GTALGWGTIVAIVTSMGGGPAAVGIVRLSGPTAVDVAARVFHP 310
G G GTI AIVTS+GGGPAAVGIVRLSGP A VA RVF P
Sbjct: 80 GGGAGPGTIAAIVTSLGGGPAAVGIVRLSGPDAAAVAGRVFRP 122
>ref|XP_004973401.1| PREDICTED: LOW QUALITY PROTEIN: probable tRNA modification GTPase
mnmE-like [Setaria italica]
Length = 544
Score = 62.4 bits (150), Expect = 6e-08
Identities = 31/37 (83%), Positives = 32/37 (86%)
Frame = +2
Query: 200 GTIVAIVTSMGGGPAAVGIVRLSGPTAVDVAARVFHP 310
GTI AIVTS+GGGPAAVGIVRLSGP AV VA RVF P
Sbjct: 76 GTIAAIVTSLGGGPAAVGIVRLSGPDAVAVAGRVFRP 112
>ref|XP_002444316.1| hypothetical protein SORBIDRAFT_07g020060 [Sorghum bicolor]
gi|241940666|gb|EES13811.1| hypothetical protein
SORBIDRAFT_07g020060 [Sorghum bicolor]
Length = 548
Score = 62.4 bits (150), Expect = 6e-08
Identities = 43/85 (50%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Frame = +2
Query: 74 SFPKTLFLHSKTLV---SRLSTEDTHQIVTKDERLRTEDGTALGWG---TIVAIVTSMGG 235
S P+TL + TLV S + +LR + G G G TI AIVTS+GG
Sbjct: 32 SSPRTLATRADTLVLPGDERSPSPSPSPSRLPGQLRPDYGGGGGGGAPGTIAAIVTSLGG 91
Query: 236 GPAAVGIVRLSGPTAVDVAARVFHP 310
GPAAVGIVRLSGP AV VA RVF P
Sbjct: 92 GPAAVGIVRLSGPDAVAVADRVFRP 116
>ref|XP_002513878.1| gtpase mss1/trme, putative [Ricinus communis]
gi|223546964|gb|EEF48461.1| gtpase mss1/trme, putative
[Ricinus communis]
Length = 557
Score = 62.4 bits (150), Expect = 6e-08
Identities = 35/55 (63%), Positives = 41/55 (74%), Gaps = 3/55 (5%)
Frame = +2
Query: 155 KDERLRTEDGTA---LGWGTIVAIVTSMGGGPAAVGIVRLSGPTAVDVAARVFHP 310
KD+R +G++ TI AIVTS+GG PAAVGIVRLSGP+AVDVAARVF P
Sbjct: 71 KDQRFLGSNGSSDNDNSGTTIAAIVTSVGGPPAAVGIVRLSGPSAVDVAARVFKP 125
>gb|AFW62152.1| tRNA modification GTPase trmE [Zea mays]
Length = 545
Score = 61.2 bits (147), Expect = 1e-07
Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Frame = +2
Query: 164 RLRTEDGTALGWG---TIVAIVTSMGGGPAAVGIVRLSGPTAVDVAARVFHP 310
+LR + G+ G G TI AIVTS+GGGPAAVGIVR+SGP AV VA RVF P
Sbjct: 62 QLRPDYGSGGGGGAPSTIAAIVTSLGGGPAAVGIVRISGPDAVAVADRVFRP 113
>ref|XP_006354017.1| PREDICTED: probable tRNA modification GTPase MnmE-like isoform X2
[Solanum tuberosum]
Length = 581
Score = 60.1 bits (144), Expect = 3e-07
Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Frame = +2
Query: 122 LSTEDTHQIVTKDERLR-----TEDGTALGWGTIVAIVTSMGGGPAAVGIVRLSGPTAVD 286
+S E + ++ +DERL T A+ TI AIVTS+GG AAVGI+RLSGP AV
Sbjct: 80 ISKESSTLVLKQDERLLGSGSVTPLDPAVNTSTIAAIVTSLGGPAAAVGIIRLSGPFAVP 139
Query: 287 VAARVFHP 310
+ RVFHP
Sbjct: 140 IVGRVFHP 147