BLASTX nr result
ID: Zingiber24_contig00049528
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00049528
(263 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510620.1| pentatricopeptide repeat-containing protein,... 88 1e-15
gb|EOY01069.1| Tetratricopeptide repeat-like superfamily protein... 84 2e-14
ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containi... 82 1e-13
emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera] 82 1e-13
ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 78 1e-12
ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 78 1e-12
ref|XP_006344830.1| PREDICTED: pentatricopeptide repeat-containi... 76 5e-12
ref|XP_004233934.1| PREDICTED: pentatricopeptide repeat-containi... 75 7e-12
gb|ESW26898.1| hypothetical protein PHAVU_003G157500g [Phaseolus... 67 2e-09
gb|ESW26897.1| hypothetical protein PHAVU_003G157500g [Phaseolus... 67 2e-09
ref|XP_006410511.1| hypothetical protein EUTSA_v10017851mg [Eutr... 67 2e-09
ref|XP_006293702.1| hypothetical protein CARUB_v10022660mg [Caps... 67 2e-09
ref|XP_002879464.1| pentatricopeptide repeat-containing protein ... 67 2e-09
ref|NP_180924.1| pentatricopeptide repeat-containing protein [Ar... 65 1e-08
gb|EXC54206.1| hypothetical protein L484_001394 [Morus notabilis] 63 4e-08
ref|XP_004308660.1| PREDICTED: pentatricopeptide repeat-containi... 63 5e-08
ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [S... 61 2e-07
ref|XP_004976246.1| PREDICTED: pentatricopeptide repeat-containi... 60 2e-07
ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group] g... 60 3e-07
gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japo... 60 3e-07
>ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223551321|gb|EEF52807.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 708
Score = 87.8 bits (216), Expect = 1e-15
Identities = 47/86 (54%), Positives = 60/86 (69%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
AKC LP+A F+ I KDV+SWN LIN YSQ GP GS V +LF+RMRA+ ++LP
Sbjct: 54 AKCCHLPKAKLVFDRIH-NKDVISWNCLINGYSQQGPTGSSFVMELFQRMRAD---NILP 109
Query: 82 NCFTFAGVFTAASHSPGDIWFGRCAH 5
N TF+G+FTAAS+ I+FG+ AH
Sbjct: 110 NAHTFSGIFTAASNL-SSIFFGQQAH 134
>gb|EOY01069.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
Length = 716
Score = 84.3 bits (207), Expect = 2e-14
Identities = 49/86 (56%), Positives = 57/86 (66%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
AKC L +A FE+I KDVVSWN LIN YSQ GP S V LF+RMRAE + LP
Sbjct: 53 AKCGDLSKAKCVFENI-QHKDVVSWNCLINGYSQQGPTASTFVMQLFQRMRAE---NYLP 108
Query: 82 NCFTFAGVFTAASHSPGDIWFGRCAH 5
N TFAGVFTAAS+ D++ G+ AH
Sbjct: 109 NAHTFAGVFTAASNL-SDVFSGQQAH 133
>ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera] gi|302141693|emb|CBI18896.3| unnamed
protein product [Vitis vinifera]
Length = 703
Score = 81.6 bits (200), Expect = 1e-13
Identities = 49/86 (56%), Positives = 56/86 (65%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
AKC +L A FE I KDVVSWN +IN YSQ GP+GS V +LF+RMRAE + P
Sbjct: 51 AKCQRLREAKFVFERI-QNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAE---NTAP 106
Query: 82 NCFTFAGVFTAASHSPGDIWFGRCAH 5
N TFAGVFTAAS + D GR AH
Sbjct: 107 NAHTFAGVFTAAS-TLVDAAGGRLAH 131
>emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 81.6 bits (200), Expect = 1e-13
Identities = 49/86 (56%), Positives = 56/86 (65%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
AKC +L A FE I KDVVSWN +IN YSQ GP+GS V +LF+RMRAE + P
Sbjct: 51 AKCQRLREAKFVFERI-QNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAE---NTAP 106
Query: 82 NCFTFAGVFTAASHSPGDIWFGRCAH 5
N TFAGVFTAAS + D GR AH
Sbjct: 107 NAHTFAGVFTAAS-TLVDAAGGRLAH 131
>ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 78.2 bits (191), Expect = 1e-12
Identities = 44/76 (57%), Positives = 50/76 (65%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
AKC + +A FE I KDVVSWN LIN YSQ G G V +LF+RMRAE + LP
Sbjct: 56 AKCGSIVKAKLVFESI-TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAE---NTLP 111
Query: 82 NCFTFAGVFTAASHSP 35
N TF+GVFTAAS SP
Sbjct: 112 NGHTFSGVFTAASSSP 127
>ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 692
Score = 78.2 bits (191), Expect = 1e-12
Identities = 44/76 (57%), Positives = 50/76 (65%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
AKC + +A FE I KDVVSWN LIN YSQ G G V +LF+RMRAE + LP
Sbjct: 56 AKCGSIVKAKLVFESI-TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAE---NTLP 111
Query: 82 NCFTFAGVFTAASHSP 35
N TF+GVFTAAS SP
Sbjct: 112 NGHTFSGVFTAASSSP 127
>ref|XP_006344830.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Solanum tuberosum]
Length = 721
Score = 75.9 bits (185), Expect = 5e-12
Identities = 46/88 (52%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIG-PNGSQSVFDLFRRMRAECGLSVL 86
AKC +L A AF++I + KDVVSWN LIN YSQ+G + S SV +LF+ MR E + L
Sbjct: 60 AKCHRLSDAHLAFQEIQS-KDVVSWNCLINGYSQLGRRDSSLSVLNLFKLMRQE---NAL 115
Query: 85 PNCFTFAGVFTAASHSPGDIWFGRCAHC 2
PN TFAG+FT+ S + GD + G+ AHC
Sbjct: 116 PNPHTFAGIFTSVS-TLGDSFTGKQAHC 142
>ref|XP_004233934.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Solanum lycopersicum]
Length = 721
Score = 75.5 bits (184), Expect = 7e-12
Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIG-PNGSQSVFDLFRRMRAECGLSVL 86
AKC +L A AF++I KDVVSWNSLIN YSQ+G + S S +LF+ MR E + L
Sbjct: 60 AKCHRLSDAHLAFQEIQT-KDVVSWNSLINGYSQLGRRDSSLSALNLFKLMRQE---NTL 115
Query: 85 PNCFTFAGVFTAASHSPGDIWFGRCAHC 2
PN TFAG+FT+ S + GD + G+ AHC
Sbjct: 116 PNPHTFAGIFTSLS-TLGDSFTGKQAHC 142
>gb|ESW26898.1| hypothetical protein PHAVU_003G157500g [Phaseolus vulgaris]
Length = 725
Score = 67.4 bits (163), Expect = 2e-09
Identities = 44/87 (50%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQS-VFDLFRRMRAECGLSVL 86
AKC L A F++I KDVVSWN LIN++SQ + S S V LF RM A + +
Sbjct: 55 AKCGHLAEANLVFDNI-VHKDVVSWNCLINAFSQQQAHSSSSHVMRLFHRMMA---CTTV 110
Query: 85 PNCFTFAGVFTAASHSPGDIWFGRCAH 5
PN TFAGVFTAAS+ D+ GR AH
Sbjct: 111 PNAHTFAGVFTAASNL-ADVSAGRLAH 136
>gb|ESW26897.1| hypothetical protein PHAVU_003G157500g [Phaseolus vulgaris]
Length = 732
Score = 67.4 bits (163), Expect = 2e-09
Identities = 44/87 (50%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQS-VFDLFRRMRAECGLSVL 86
AKC L A F++I KDVVSWN LIN++SQ + S S V LF RM A + +
Sbjct: 55 AKCGHLAEANLVFDNI-VHKDVVSWNCLINAFSQQQAHSSSSHVMRLFHRMMA---CTTV 110
Query: 85 PNCFTFAGVFTAASHSPGDIWFGRCAH 5
PN TFAGVFTAAS+ D+ GR AH
Sbjct: 111 PNAHTFAGVFTAASNL-ADVSAGRLAH 136
>ref|XP_006410511.1| hypothetical protein EUTSA_v10017851mg [Eutrema salsugineum]
gi|557111680|gb|ESQ51964.1| hypothetical protein
EUTSA_v10017851mg [Eutrema salsugineum]
Length = 723
Score = 67.4 bits (163), Expect = 2e-09
Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGP-NGSQSVFDLFRRMRAECGLSVL 86
AKC LP+A + F I KDVVSWNSLI YSQ G + S++V LF+ MR++ ++L
Sbjct: 62 AKCGHLPKAHSIFNAI-ITKDVVSWNSLITGYSQNGSLSSSRTVMQLFKEMRSQ---NML 117
Query: 85 PNCFTFAGVFTAASHSPGDIWFGRCAH 5
PN +T AG+F A S S G G+ AH
Sbjct: 118 PNAYTLAGIFKAES-SLGSGTVGKQAH 143
>ref|XP_006293702.1| hypothetical protein CARUB_v10022660mg [Capsella rubella]
gi|482562410|gb|EOA26600.1| hypothetical protein
CARUB_v10022660mg [Capsella rubella]
Length = 799
Score = 67.4 bits (163), Expect = 2e-09
Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGP-NGSQSVFDLFRRMRAECGLSVL 86
+KC QLP+A + F+ I KDVVSWNSLI YSQ G + S V LFR MRA+ ++L
Sbjct: 133 SKCGQLPKAHSIFKAIIC-KDVVSWNSLITGYSQNGGISSSHIVMQLFREMRAQ---NIL 188
Query: 85 PNCFTFAGVFTAAS 44
PN +T AG+F A S
Sbjct: 189 PNAYTLAGIFKAES 202
>ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297325303|gb|EFH55723.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 713
Score = 67.0 bits (162), Expect = 2e-09
Identities = 44/87 (50%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGP-NGSQSVFDLFRRMRAECGLSVL 86
AKC QL +A + F I KDVVSWNSLI YSQ G + S +V LFR MRA+ +L
Sbjct: 62 AKCGQLAKAHSIFNAIIC-KDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQ---DIL 117
Query: 85 PNCFTFAGVFTAASHSPGDIWFGRCAH 5
PN +T AG+F A S S GR AH
Sbjct: 118 PNAYTLAGIFKAES-SLQSCTVGRQAH 143
>ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g33680 gi|1707007|gb|AAC69139.1| hypothetical protein
[Arabidopsis thaliana] gi|330253774|gb|AEC08868.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 727
Score = 64.7 bits (156), Expect = 1e-08
Identities = 43/87 (49%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGP-NGSQSVFDLFRRMRAECGLSVL 86
AKC +L +A + F I KDVVSWNSLI YSQ G + S +V LFR MRA+ +L
Sbjct: 60 AKCGKLAKAHSIFNAIIC-KDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQ---DIL 115
Query: 85 PNCFTFAGVFTAASHSPGDIWFGRCAH 5
PN +T AG+F A S S GR AH
Sbjct: 116 PNAYTLAGIFKAES-SLQSSTVGRQAH 141
>gb|EXC54206.1| hypothetical protein L484_001394 [Morus notabilis]
Length = 719
Score = 63.2 bits (152), Expect = 4e-08
Identities = 39/86 (45%), Positives = 49/86 (56%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
A C L +A AF D KDVVSWN LIN++SQ P+ S V L +RMR E + +P
Sbjct: 54 ANCGDLTKAELAF-DSSERKDVVSWNCLINAFSQNAPSCSSPVRKLLKRMREE---NTMP 109
Query: 82 NCFTFAGVFTAASHSPGDIWFGRCAH 5
+ +TFA VF A D+ F R AH
Sbjct: 110 DAYTFAAVFAAVD---DDVVFCRQAH 132
>ref|XP_004308660.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Fragaria vesca subsp. vesca]
Length = 706
Score = 62.8 bits (151), Expect = 5e-08
Identities = 42/85 (49%), Positives = 48/85 (56%)
Frame = -2
Query: 259 KCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLPN 80
KC P A FE KDVVS+N+LIN+ S + S V LFRRMRAE + PN
Sbjct: 57 KCGDFPTAHLIFEAT-PNKDVVSFNNLINACSHHHQHSSL-VMRLFRRMRAE---NTSPN 111
Query: 79 CFTFAGVFTAASHSPGDIWFGRCAH 5
TFAGVFTAAS D+ GR H
Sbjct: 112 SHTFAGVFTAASSEASDVLGGRHVH 136
>ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
gi|241939380|gb|EES12525.1| hypothetical protein
SORBIDRAFT_06g022800 [Sorghum bicolor]
Length = 766
Score = 60.8 bits (146), Expect = 2e-07
Identities = 36/73 (49%), Positives = 42/73 (57%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
AKC L A FE +G G+DV SW+SLI Y+Q G ++ DLF RMR L V P
Sbjct: 499 AKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFG--YAKEALDLFARMR---NLGVKP 553
Query: 82 NCFTFAGVFTAAS 44
N TF GV TA S
Sbjct: 554 NHVTFVGVLTACS 566
>ref|XP_004976246.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like isoform X1 [Setaria italica]
gi|514802710|ref|XP_004976247.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like isoform X2 [Setaria italica]
Length = 761
Score = 60.5 bits (145), Expect = 2e-07
Identities = 35/73 (47%), Positives = 42/73 (57%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
AKC L A FE +G G+DV SW+SLI Y+Q G ++ DLF RMR L + P
Sbjct: 494 AKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFG--YAKEALDLFARMR---NLGIKP 548
Query: 82 NCFTFAGVFTAAS 44
N TF GV TA S
Sbjct: 549 NHVTFVGVLTACS 561
>ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
gi|52075894|dbj|BAD45840.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa Japonica
Group] gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza
sativa Japonica Group]
Length = 766
Score = 60.1 bits (144), Expect = 3e-07
Identities = 35/73 (47%), Positives = 43/73 (58%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
AKC L A FE +G +DV SW+SLI Y+Q G ++ FDLF RMR+ L + P
Sbjct: 502 AKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFG--YAKEAFDLFSRMRS---LGIRP 556
Query: 82 NCFTFAGVFTAAS 44
N TF GV TA S
Sbjct: 557 NHVTFIGVLTACS 569
>gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
Length = 749
Score = 60.1 bits (144), Expect = 3e-07
Identities = 35/73 (47%), Positives = 43/73 (58%)
Frame = -2
Query: 262 AKCSQLPRAAAAFEDIGAGKDVVSWNSLINSYSQIGPNGSQSVFDLFRRMRAECGLSVLP 83
AKC L A FE +G +DV SW+SLI Y+Q G ++ FDLF RMR+ L + P
Sbjct: 485 AKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFG--YAKEAFDLFSRMRS---LGIRP 539
Query: 82 NCFTFAGVFTAAS 44
N TF GV TA S
Sbjct: 540 NHVTFIGVLTACS 552