BLASTX nr result

ID: Zingiber24_contig00049348 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00049348
         (361 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004246769.1| PREDICTED: uncharacterized CRM domain-contai...    56   6e-06
ref|XP_006363591.1| PREDICTED: uncharacterized CRM domain-contai...    55   1e-05

>ref|XP_004246769.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
           chloroplastic-like isoform 1 [Solanum lycopersicum]
           gi|460402540|ref|XP_004246770.1| PREDICTED:
           uncharacterized CRM domain-containing protein At3g25440,
           chloroplastic-like isoform 2 [Solanum lycopersicum]
          Length = 366

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 145 SLGSFDTCWGARGFSYGSANLVLP-DGKPRFEIHEIDQPPKEXXXXXXXXXXXXXXXXXX 321
           SL    +CW  R FS+GS N V+  DGKP+FE HE++ P KE                  
Sbjct: 49  SLTRQGSCWDLRNFSHGSVNFVITKDGKPKFETHEVEAPKKEKWKTKKRLKLQRKREKKK 108

Query: 322 XXEANKADPRRI 357
              ANK DPRR+
Sbjct: 109 RNAANKRDPRRL 120


>ref|XP_006363591.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
           chloroplastic-like [Solanum tuberosum]
          Length = 368

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 166 CWGARGFSYGSANLVLP-DGKPRFEIHEIDQPPKEXXXXXXXXXXXXXXXXXXXXEANKA 342
           CW  R FS+GS N V+  DGKP+FE HE++ P KE                     ANK 
Sbjct: 56  CWDLRNFSHGSVNFVITKDGKPKFETHEVEAPKKEKWKTKKRLKLQRKREKKKRNAANKR 115

Query: 343 DPRRI 357
           DPRR+
Sbjct: 116 DPRRL 120


Top