BLASTX nr result
ID: Zingiber24_contig00048838
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00048838
(510 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006647441.1| PREDICTED: DNA mismatch repair protein PMS1-... 68 1e-09
ref|XP_003575262.1| PREDICTED: mismatch repair endonuclease PMS2... 68 1e-09
ref|NP_001047292.1| Os02g0592300 [Oryza sativa Japonica Group] g... 67 2e-09
ref|XP_004955044.1| PREDICTED: DNA mismatch repair protein PMS1-... 64 2e-08
gb|EMT21505.1| Mismatch repair endonuclease PMS2 [Aegilops tausc... 63 4e-08
dbj|BAJ86879.1| predicted protein [Hordeum vulgare subsp. vulgare] 62 1e-07
ref|XP_004247536.1| PREDICTED: mismatch repair endonuclease pms1... 61 1e-07
ref|XP_006359387.1| PREDICTED: DNA mismatch repair protein PMS1-... 61 2e-07
ref|XP_002321013.1| DNA mismatch repair family protein [Populus ... 60 4e-07
ref|XP_002454102.1| hypothetical protein SORBIDRAFT_04g024570 [S... 59 5e-07
ref|XP_006396455.1| hypothetical protein EUTSA_v10028404mg [Eutr... 55 1e-05
>ref|XP_006647441.1| PREDICTED: DNA mismatch repair protein PMS1-like [Oryza
brachyantha]
Length = 921
Score = 67.8 bits (164), Expect = 1e-09
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
Frame = -3
Query: 508 MLSLRAEIEKIYLSRGFSFAVNRIEVLENEKCDASG---EEGPLASSKGLSCEHGDQELS 338
+LSLR IE +Y + SF++N IE E E A G E L + +S D +
Sbjct: 329 LLSLREGIENMYCPQQCSFSINNIEDPEKEMDPAIGGSDENMCLIEKENVSATENDDHMD 388
Query: 337 ECDP-----PKNVQVKELNKERIFLCEKRSMPKELDSRSH----EIDESV-TPLYHPKQL 188
E D P+N +V E + K P+++ ++D S Y KQ
Sbjct: 389 ETDSDDEVAPENQKVTSSVTETVATGSK---PRDVSPLPRGPPAQVDRSAWLSAYRHKQP 445
Query: 187 NDFHKISSKIDA--KRRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHEDSCSVLSETP 14
K+ +++ R N + K++ +Q S+ NFLS NKRKHEDSC+++SE P
Sbjct: 446 E---KMPTQVKGYLTRANQVRTGLATKSSPSSTVQPSIMNFLSQNKRKHEDSCNLISEAP 502
Query: 13 LLR 5
+LR
Sbjct: 503 VLR 505
>ref|XP_003575262.1| PREDICTED: mismatch repair endonuclease PMS2-like [Brachypodium
distachyon]
Length = 921
Score = 67.8 bits (164), Expect = 1e-09
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 10/178 (5%)
Frame = -3
Query: 508 MLSLRAEIEKIYLSRGFSFAVNRIEVLENE---KCDASGEEGPLASSKGLSCEHGDQELS 338
+LSLR IE +Y + SF++N IE E E D E L + +S D +
Sbjct: 328 LLSLREAIENLYNPQQCSFSINLIEDPEKEVDPAIDEPHESTDLIETGNVSSPRNDDDKD 387
Query: 337 ECDPPKNVQVKELNKERIFLCEKRSMPKELDSRSHEIDESVTPLYHPKQLNDFHKISSKI 158
E D + Q N++ F + ++ RS + TP+ L++F K+
Sbjct: 388 ETD--SDDQDLPQNQKASFSARRVAVGTASKDRSPLPGDPATPVDR-SWLSEFQHEQPKV 444
Query: 157 -DAKRRNCAKLARNDKTACLG------LIQSSLTNFLSPNKRKHEDSCSVLSETPLLR 5
A+ + + +D+T +QSSL+NFLS NKRKHEDSC++LSE P+LR
Sbjct: 445 FHAQVKKNPAGSYHDRTGLAAKSSPSTTVQSSLSNFLSLNKRKHEDSCNLLSEAPVLR 502
>ref|NP_001047292.1| Os02g0592300 [Oryza sativa Japonica Group]
gi|50726475|dbj|BAD34084.1| putative PMS2 postmeiotic
segregation increased 2 [Oryza sativa Japonica Group]
gi|113536823|dbj|BAF09206.1| Os02g0592300 [Oryza sativa
Japonica Group] gi|218191082|gb|EEC73509.1| hypothetical
protein OsI_07875 [Oryza sativa Indica Group]
gi|222623151|gb|EEE57283.1| hypothetical protein
OsJ_07338 [Oryza sativa Japonica Group]
Length = 923
Score = 67.4 bits (163), Expect = 2e-09
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 12/180 (6%)
Frame = -3
Query: 508 MLSLRAEIEKIYLSRGFSFAVNRIEVLENEK---CDASGEEGPLASSKGLSCEHGDQELS 338
+LSLR IE +Y + SF++N +E E D S E+ L + +S D ++
Sbjct: 329 LLSLREGIENLYCPQQCSFSINSVEDPGKEMDPAIDGSDEDMCLTEKENVSAPENDDDMD 388
Query: 337 ECDP-----PKNVQVKELNKERIFLCEKRSMPKELDSRSH----EIDESVTPLYHPKQLN 185
E D P+N +V R+ S PK++ S ++D S + +
Sbjct: 389 ETDSDDEVTPENQKVPSSVTTRV---ATGSTPKDVSPLSRGPPAQLDRSTLLSAYRYEQR 445
Query: 184 DFHKISSKIDAKRRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHEDSCSVLSETPLLR 5
+ K + N + K++ +Q S+ FLS NKRKHEDSC+++SE P+LR
Sbjct: 446 EKTPTRVKSYPAQANHVRTGLAAKSSPSSAVQPSIMKFLSQNKRKHEDSCNLISEAPVLR 505
>ref|XP_004955044.1| PREDICTED: DNA mismatch repair protein PMS1-like [Setaria italica]
Length = 840
Score = 63.9 bits (154), Expect = 2e-08
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Frame = -3
Query: 502 SLRAEIEKIYLSRGFSFAVNRIEVLENEK---CDASGEEGPLASSKGLSCEHGDQELSEC 332
SLR +E +Y + SF+VNR+E E E+ D E+ L + +S + E
Sbjct: 339 SLREAVENLYSPQQCSFSVNRVEDPEKEEDTVTDGHSEDTDLIEVENVSSPDNSDDKEET 398
Query: 331 DPPKNVQVKELNKERIFLCEKRSMPKELDSRSHEIDE----SVTPLYHPKQLNDF-HKIS 167
D QV NK++ K + +D+ S E+ + T L F ++
Sbjct: 399 DSED--QVSPENKKKPSSVTKVA----IDATSREVSPLSRGTATQADRSAWLPSFSYEQP 452
Query: 166 SKIDAKRRNCAKLARNDKTACLG------LIQSSLTNFLSPNKRKHEDSCSVLSETPLLR 5
+ + + CA A + +T +QSSL N++S NKRKHED C+++SE P+LR
Sbjct: 453 KRFPKEGKGCAPGANHFRTGLAAKSTHSPTVQSSLMNYVSLNKRKHEDDCNLISEAPVLR 512
>gb|EMT21505.1| Mismatch repair endonuclease PMS2 [Aegilops tauschii]
Length = 1379
Score = 63.2 bits (152), Expect = 4e-08
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Frame = -3
Query: 508 MLSLRAEIEKIYLSRGFSFAVNRIEVLE--NEKCDASGEEGPL----------------A 383
+LSLR IE +Y + SF++N IE E N D E+ P+ +
Sbjct: 314 LLSLREAIENLYSPQQCSFSINHIEDPEKVNHTEDPVKEDDPMIDEPIKSTYLMDKENVS 373
Query: 382 SSKGLSCEHGDQELSECDPPKNVQVKELNKERIFLCEKRSMPKELDSRSHEIDES----V 215
S + +C+ D + + DP K+ +V R M S E+D S
Sbjct: 374 SPENDNCKE-DTDSDDQDPLKDQKVSSSATRAATGAASRDMSPLPRSPDTEVDRSPWFSA 432
Query: 214 TPLYHPKQLNDFHKISSKIDAKRRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHEDSC 35
PK+ + K + R N + +++ ++QSSL NFLS NKRKHEDSC
Sbjct: 433 LRYEQPKR----PRADFKNNPVRENNVRTGLAAQSSPSTIVQSSLMNFLSLNKRKHEDSC 488
Query: 34 SVLSETPLLR 5
++++E P+LR
Sbjct: 489 NLITEAPVLR 498
>dbj|BAJ86879.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 780
Score = 61.6 bits (148), Expect = 1e-07
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Frame = -3
Query: 508 MLSLRAEIEKIYLSRGFSFAVNRIEVLE--NEKCDASGEEGP----------------LA 383
+LSLR IE +Y + SF++N IE E N D E+ P ++
Sbjct: 328 LLSLREAIESLYNPQQCSFSINHIEDPEKVNHTEDPVKEDDPTIDEPIKSTYLMDKENVS 387
Query: 382 SSKGLSCEHGDQELSECDPPKNVQVKELNKERIFLCEKRSMPKELDSRSHEIDE----SV 215
S + +C+ D + + DPPK+ +V R M S E+D S
Sbjct: 388 SPENDNCKE-DTDSDDQDPPKDQKVFSSATRVATGAACRDMSPWTRSPDTEVDRPPWFSA 446
Query: 214 TPLYHPKQLNDFHKISSKIDAKRRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHEDSC 35
PK+ + K + R N + +++ ++QSSL NFLS NKRKHEDSC
Sbjct: 447 LRYEQPKR----PRADCKSNPVRENHVRTGLAAQSSPSTIVQSSLMNFLSLNKRKHEDSC 502
Query: 34 SVLSETPLLR 5
++++E +LR
Sbjct: 503 NLITEAQVLR 512
>ref|XP_004247536.1| PREDICTED: mismatch repair endonuclease pms1-like [Solanum
lycopersicum]
Length = 940
Score = 61.2 bits (147), Expect = 1e-07
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Frame = -3
Query: 502 SLRAEIEKIYLSRGFSFAVNRI-EVLENEKCDASGEEGPLASSKGLSCEHGDQELSECDP 326
SLR +EKIY S S+AVN I EV + S + SK L + D + +C
Sbjct: 335 SLREALEKIYSSNHASYAVNSIQEVDQKHTSTLSHLKAFQFQSKQLLSDINDDQEGDC-- 392
Query: 325 PKNVQVKELNKERIFLC---EKRSMPKE---LDSRSHEIDESVTPLYHPKQLNDFHKISS 164
V +L+KE FL E MP L+ ++ + +H K+ ++ SS
Sbjct: 393 -----VGKLHKEGHFLKKSQELNDMPVTEIMLNDGHRSTEKDFSLRFHGKKKDNNSSRSS 447
Query: 163 KIDA-------KRRNCAKLARNDKTA--------CLGLIQSSLTNFLSPNKRKHEDSCSV 29
+ RN DK+ C ++QSSLT F++ NKRKHE +
Sbjct: 448 LQEIGGLPTAITDRNALTPCSKDKSCIDNSRYVNCASIVQSSLTKFVTVNKRKHESMSTT 507
Query: 28 LSETPLLRN 2
LSE P+LRN
Sbjct: 508 LSEVPILRN 516
>ref|XP_006359387.1| PREDICTED: DNA mismatch repair protein PMS1-like [Solanum
tuberosum]
Length = 939
Score = 60.8 bits (146), Expect = 2e-07
Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Frame = -3
Query: 502 SLRAEIEKIYLSRGFSFAVNRI-EVLENEKCDASGEEGPLASSKGLSCEHGDQELSECDP 326
SLR +EKIY S S+AVN EV E S E K L + D + +C
Sbjct: 335 SLREALEKIYSSNHASYAVNSFQEVEEKHTSTPSHLEAFQFQPKQLLSDINDAQEGDCIG 394
Query: 325 P---------KNVQVKELNKERIFLCE-KRSMPKELDSRSH----EIDESVTPLYH---- 200
K ++K+++ + L + RS K+ R H + + S + L
Sbjct: 395 ELRKDGHFLKKTQELKDMSVTEVMLNDGNRSTEKDFSLRFHGKKKDNNSSRSSLQEVGGL 454
Query: 199 PKQLNDFHKISSKIDAKRRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHEDSCSVLSE 20
P + D H ++ +K ++C AR A ++QSSLT F+ NKRKHE+ + LSE
Sbjct: 455 PTAITDRHALTPC--SKDKSCIDNARYVDRA--SIVQSSLTKFVMVNKRKHENLSTTLSE 510
Query: 19 TPLLRN 2
P+LRN
Sbjct: 511 VPILRN 516
>ref|XP_002321013.1| DNA mismatch repair family protein [Populus trichocarpa]
gi|222861786|gb|EEE99328.1| DNA mismatch repair family
protein [Populus trichocarpa]
Length = 915
Score = 59.7 bits (143), Expect = 4e-07
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 14/183 (7%)
Frame = -3
Query: 508 MLSLRAEIEKIYLSRGFSFAVNRIE-----VLENEKCDASGEEGPLA---SSKGLSCEHG 353
+L+LR +EK Y S ++VN+ E ++ C + L+ S+ G E
Sbjct: 328 LLALREGLEKNYSSSNSCYSVNKFENHAKAADSSQLCSPREKSNMLSKQSSANGNDSEET 387
Query: 352 DQELSECDPPKNVQVK----ELNKERIFLCEKRSMPKELDSRSHEID--ESVTPLYHPKQ 191
+ + P V+VK ++ + I E++ M K+ R H I +S+T K
Sbjct: 388 QTDAEDSSPLMTVEVKSKPFQVGERSIHDIEEKFMMKDFALRLHGIKKTDSLTNSNSCKA 447
Query: 190 LNDFHKISSKIDAKRRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHEDSCSVLSETPL 11
+ ++ + + + D G QS L+NFL+ NKRK ED + LSE P+
Sbjct: 448 TTHLNIVTDQNAQCPSRVVERVKGDSNGPSGSFQSKLSNFLTVNKRKREDITTQLSEVPV 507
Query: 10 LRN 2
LRN
Sbjct: 508 LRN 510
>ref|XP_002454102.1| hypothetical protein SORBIDRAFT_04g024570 [Sorghum bicolor]
gi|241933933|gb|EES07078.1| hypothetical protein
SORBIDRAFT_04g024570 [Sorghum bicolor]
Length = 780
Score = 59.3 bits (142), Expect = 5e-07
Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Frame = -3
Query: 502 SLRAEIEKIYLSRGFSFAVNRIEVLENEK---CDASGEEGPLASSKGLSCEHGDQELSEC 332
SLR +E +Y SF+VN I+ E E D E+ + +S + E E
Sbjct: 341 SLREAVENLYSPLQCSFSVNHIKDPEKEGDAVTDGHNEDTNAITMANVSASNNIDEDEET 400
Query: 331 DPPKNVQVKELNKERIFLCEKRSMPKELDSRSHEIDESVTPLYHPKQLNDFHKISSKIDA 152
D +V E + +P + P PK+ N F +S +
Sbjct: 401 DSEDHVSP-----------ENQKLPSSV----------AKPKRLPKEGNSF---ASGTNR 436
Query: 151 KRRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHEDSCSVLSETPLLR 5
R A + + T IQSSL NF+S NKRKHED C+++SETP+LR
Sbjct: 437 FRTGLAAKSTHSST-----IQSSLMNFVSLNKRKHEDDCTLISETPVLR 480
>ref|XP_006396455.1| hypothetical protein EUTSA_v10028404mg [Eutrema salsugineum]
gi|557097472|gb|ESQ37908.1| hypothetical protein
EUTSA_v10028404mg [Eutrema salsugineum]
Length = 916
Score = 55.1 bits (131), Expect = 1e-05
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 12/181 (6%)
Frame = -3
Query: 508 MLSLRAEIEKIYLSRGFSFAVNRIEVLEN----EKCDASG-EEGPLASSKGLSCEHGDQE 344
M SLR + +IY S S+ VNR+E EN EK S +E SKG+ + G +
Sbjct: 329 MGSLREGLNEIYSSSNASYTVNRLE--ENPEQPEKAGVSSLQEKSNLLSKGIVLDVGSKT 386
Query: 343 L------SECDPPKNVQVKELNKERIFLCE-KRSMPKELDSRSHEIDESVTPLYHPKQLN 185
E P + ++++ + F + K K+ +S S DES++ ++ K +
Sbjct: 387 SVAEAVEKEISPSREAEIEDSSALEKFKFDIKARGTKKGESSSSVNDESLSVIHSNKTAS 446
Query: 184 DFHKISSKIDAKRRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHEDSCSVLSETPLLR 5
+ I+ + +K N + QS+L F++ KRKHE+ ++LSETP+LR
Sbjct: 447 KALPHFNVIEKVTTDASKDLSNRSS----FSQSTLNTFVTVGKRKHENISTILSETPVLR 502
Query: 4 N 2
N
Sbjct: 503 N 503