BLASTX nr result
ID: Zingiber24_contig00048174
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00048174
(273 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006661494.1| PREDICTED: LOW QUALITY PROTEIN: high mobilit... 61 2e-07
ref|XP_006473735.1| PREDICTED: high mobility group B protein 9-l... 60 2e-07
dbj|BAC79159.1| glutathione S-transferase GST 16 - like protein ... 60 2e-07
ref|XP_006435276.1| hypothetical protein CICLE_v10001816mg [Citr... 59 5e-07
ref|XP_006840181.1| hypothetical protein AMTR_s00089p00097770 [A... 59 7e-07
ref|NP_177738.1| high mobility group B protein 9 [Arabidopsis th... 57 3e-06
ref|XP_006828877.1| hypothetical protein AMTR_s00001p00177580 [A... 55 7e-06
ref|XP_004145526.1| PREDICTED: high mobility group B protein 9-l... 55 1e-05
gb|ADN34129.1| high mobility group family [Cucumis melo subsp. m... 55 1e-05
>ref|XP_006661494.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group B protein
9-like [Oryza brachyantha]
Length = 289
Score = 60.8 bits (146), Expect = 2e-07
Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Frame = -1
Query: 156 PKSRKRPSDEPQNRG--PHNFTVTGSIDGKFEYGYMVTVKIGNETLRGVLYHV 4
P++ KR + P+ G P +F+VTGSIDGKFE+GY VTVKI ETLRGVLY V
Sbjct: 147 PETGKRAA-LPERLGGEPCSFSVTGSIDGKFEHGYFVTVKIAGETLRGVLYRV 198
>ref|XP_006473735.1| PREDICTED: high mobility group B protein 9-like isoform X2 [Citrus
sinensis]
Length = 327
Score = 60.5 bits (145), Expect = 2e-07
Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = -1
Query: 240 VATASSQTRAPPCRLEHSLVVCDSTMRTPKSRKRPSDEPQNR--GPHNFTVTGSIDGKFE 67
V +AS +P CR +LV S KR +D P + G FT G IDGKF+
Sbjct: 131 VPSASFSVHSPSCRPGLALV--------EYSPKRINDHPDSHIEGQSCFTAVGRIDGKFD 182
Query: 66 YGYMVTVKIGNETLRGVLYH 7
GY+V+VK+G+ETL GVLYH
Sbjct: 183 CGYLVSVKLGSETLSGVLYH 202
>dbj|BAC79159.1| glutathione S-transferase GST 16 - like protein [Oryza sativa
Japonica Group] gi|125564567|gb|EAZ09947.1| hypothetical
protein OsI_32246 [Oryza sativa Indica Group]
gi|125606508|gb|EAZ45544.1| hypothetical protein
OsJ_30204 [Oryza sativa Japonica Group]
Length = 306
Score = 60.5 bits (145), Expect = 2e-07
Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Frame = -1
Query: 231 ASSQTRAPPCRLEHSLVVCDSTMRTPKSRKRPSDEPQNRG--PHNFTVTGSIDGKFEYGY 58
AS+ T+ P ++ + D + ++ KR + P+ G P +F+VTGSIDGKFE+GY
Sbjct: 121 ASALTKTPRRKMRGT---SDQSPAAAEAGKRMA-LPERLGGEPCSFSVTGSIDGKFEHGY 176
Query: 57 MVTVKIGNETLRGVLYHV 4
+VTVKI ETLRGVLY V
Sbjct: 177 LVTVKIAAETLRGVLYRV 194
>ref|XP_006435276.1| hypothetical protein CICLE_v10001816mg [Citrus clementina]
gi|568839528|ref|XP_006473734.1| PREDICTED: high
mobility group B protein 9-like isoform X1 [Citrus
sinensis] gi|557537398|gb|ESR48516.1| hypothetical
protein CICLE_v10001816mg [Citrus clementina]
Length = 328
Score = 59.3 bits (142), Expect = 5e-07
Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = -1
Query: 237 ATASSQTRAPPCRLEHSLVVCDSTMRTPKSRKRPSDEPQNR--GPHNFTVTGSIDGKFEY 64
+ AS +P CR +LV S KR +D P + G FT G IDGKF+
Sbjct: 133 SAASFSVHSPSCRPGLALV--------EYSPKRINDHPDSHIEGQSCFTAVGRIDGKFDC 184
Query: 63 GYMVTVKIGNETLRGVLYH 7
GY+V+VK+G+ETL GVLYH
Sbjct: 185 GYLVSVKLGSETLSGVLYH 203
>ref|XP_006840181.1| hypothetical protein AMTR_s00089p00097770 [Amborella trichopoda]
gi|548841880|gb|ERN01856.1| hypothetical protein
AMTR_s00089p00097770 [Amborella trichopoda]
Length = 347
Score = 58.9 bits (141), Expect = 7e-07
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = -1
Query: 156 PKSRKRPSDEPQNRGPHNFTVTGSIDGKFEYGYMVTVKIGNETLRGVLYH 7
P+ RK PS+ P + V G IDGKFE+GY+VTV IG+E L+GVLYH
Sbjct: 92 PQRRKAPSEIHLAAFPQDHPVNGVIDGKFEHGYLVTVTIGSEKLKGVLYH 141
>ref|NP_177738.1| high mobility group B protein 9 [Arabidopsis thaliana]
gi|75265821|sp|Q9SGS2.1|HMGB9_ARATH RecName: Full=High
mobility group B protein 9; AltName:
Full=Nucleosome/chromatin assembly factor group D 09;
Short=Nucleosome/chromatin assembly factor group D 9
gi|6573729|gb|AAF17649.1|AC009978_25 T23E18.4
[Arabidopsis thaliana] gi|20466328|gb|AAM20481.1|
unknown protein [Arabidopsis thaliana]
gi|31711812|gb|AAP68262.1| At1g76110 [Arabidopsis
thaliana] gi|332197676|gb|AEE35797.1| high mobility
group B protein 9 [Arabidopsis thaliana]
Length = 338
Score = 57.0 bits (136), Expect = 3e-06
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = -1
Query: 159 TPKSRKRPSDEPQNRGPHNFTVTGSIDGKFEYGYMVTVKIGNETLRGVLYH 7
TP S + + P ++G +FT G+I+GKF+ GY+V VK+G+E L GVLYH
Sbjct: 159 TPPSIRYHNTHPPSQGSSSFTAIGTIEGKFDCGYLVKVKLGSEILNGVLYH 209
>ref|XP_006828877.1| hypothetical protein AMTR_s00001p00177580 [Amborella trichopoda]
gi|548833856|gb|ERM96293.1| hypothetical protein
AMTR_s00001p00177580 [Amborella trichopoda]
Length = 367
Score = 55.5 bits (132), Expect = 7e-06
Identities = 28/51 (54%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = -1
Query: 153 KSRKRPSDEPQNRGPHNFT--VTGSIDGKFEYGYMVTVKIGNETLRGVLYH 7
K R+R S Q P N V G IDGKF++GY+VTV +G TLRGVLYH
Sbjct: 161 KQRRRSSSNVQIGAPVNLPAPVIGKIDGKFDHGYLVTVNLGTATLRGVLYH 211
>ref|XP_004145526.1| PREDICTED: high mobility group B protein 9-like [Cucumis sativus]
gi|449519744|ref|XP_004166894.1| PREDICTED: high
mobility group B protein 9-like [Cucumis sativus]
Length = 324
Score = 55.1 bits (131), Expect = 1e-05
Identities = 29/63 (46%), Positives = 38/63 (60%)
Frame = -1
Query: 195 EHSLVVCDSTMRTPKSRKRPSDEPQNRGPHNFTVTGSIDGKFEYGYMVTVKIGNETLRGV 16
E+ L + + T +T P E VTG+IDGKF+ GY+VTVK+G+E LRGV
Sbjct: 142 ENELALVEYTPKTTSFSPGPPSE----------VTGTIDGKFDCGYLVTVKLGSEVLRGV 191
Query: 15 LYH 7
LYH
Sbjct: 192 LYH 194
>gb|ADN34129.1| high mobility group family [Cucumis melo subsp. melo]
Length = 324
Score = 55.1 bits (131), Expect = 1e-05
Identities = 29/63 (46%), Positives = 38/63 (60%)
Frame = -1
Query: 195 EHSLVVCDSTMRTPKSRKRPSDEPQNRGPHNFTVTGSIDGKFEYGYMVTVKIGNETLRGV 16
E+ L + + T +T P E VTG+IDGKF+ GY+VTVK+G+E LRGV
Sbjct: 142 ENELALVEYTPKTTSFSPGPPSE----------VTGTIDGKFDCGYLVTVKLGSEVLRGV 191
Query: 15 LYH 7
LYH
Sbjct: 192 LYH 194