BLASTX nr result
ID: Zingiber24_contig00047511
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00047511
(215 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD77414.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 65 4e-14
gb|ABA46899.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 65 2e-13
gb|ABQ42552.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 64 3e-13
gb|ABA46878.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 64 3e-13
gb|ABA46879.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 64 3e-13
gb|ABA46875.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 65 4e-13
sp|O24045.1|RBS_MUSAC RecName: Full=Ribulose bisphosphate carbox... 65 6e-13
gb|ABA46887.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 64 6e-13
gb|ABA46901.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 65 8e-13
gb|ABA46877.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 64 1e-12
gb|ABA46882.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 63 2e-12
gb|ABA46883.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 62 2e-12
gb|ABA46900.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 65 2e-12
gb|ABA46898.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 65 2e-12
gb|ABA46889.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 65 4e-12
gb|ABA46892.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 63 6e-12
gb|ABA46911.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 63 6e-12
gb|ABA46888.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 63 6e-12
gb|ABA46910.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 63 6e-12
gb|ABA46891.1| chloroplast ribulose-1,5-bisphosphate carboxylase... 63 6e-12
>gb|ABD77414.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Zingiber officinale]
Length = 121
Score = 64.7 bits (156), Expect(2) = 4e-14
Identities = 34/51 (66%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Frame = +3
Query: 3 FSGLKPLADAPF-LQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
FSGLK L+ PF ++ANA LSHL SN CRV+CM+ PI G KKFETLSYL
Sbjct: 26 FSGLKSLSGVPFPTKRANAHLSHLPSNGCRVRCMQVWPIEGKKKFETLSYL 76
Score = 38.5 bits (88), Expect(2) = 4e-14
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRSN 213
YLP L +EALLKQIEYLLRSN
Sbjct: 75 YLPTLKDEALLKQIEYLLRSN 95
>gb|ABA46899.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 180
Score = 65.1 bits (157), Expect(2) = 2e-13
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +K NADLSHL SN RVQCMK PI GVKKFETLSYL
Sbjct: 27 FTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYL 76
Score = 36.2 bits (82), Expect(2) = 2e-13
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +EALLKQIEYLLRS
Sbjct: 75 YLPTLKDEALLKQIEYLLRS 94
>gb|ABQ42552.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
gi|238801314|gb|ACR56377.1| chloroplast
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 180
Score = 63.9 bits (154), Expect(2) = 3e-13
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +K NADLSHL SN RVQCMK PI G+KKFETLSYL
Sbjct: 27 FTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGLKKFETLSYL 76
Score = 36.2 bits (82), Expect(2) = 3e-13
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +EALLKQIEYLLRS
Sbjct: 75 YLPTLKDEALLKQIEYLLRS 94
>gb|ABA46878.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 161
Score = 63.9 bits (154), Expect(2) = 3e-13
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +K NADLSHL SN RVQCMK PI G+KKFETLSYL
Sbjct: 25 FTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGLKKFETLSYL 74
Score = 36.2 bits (82), Expect(2) = 3e-13
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +EALLKQIEYLLRS
Sbjct: 73 YLPTLKDEALLKQIEYLLRS 92
>gb|ABA46879.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 161
Score = 63.9 bits (154), Expect(2) = 3e-13
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +K NADLSHL SN RVQCMK PI G+KKFETLSYL
Sbjct: 25 FTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGLKKFETLSYL 74
Score = 36.2 bits (82), Expect(2) = 3e-13
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +EALLKQIEYLLRS
Sbjct: 73 YLPTLKDEALLKQIEYLLRS 92
>gb|ABA46875.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana] gi|76574189|gb|ABA46876.1|
chloroplast ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit [Musa balbisiana]
Length = 161
Score = 65.1 bits (157), Expect(2) = 4e-13
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL SN RVQCMK PI G KKFETLSYL
Sbjct: 25 FTGLKSTSAFPITRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYL 74
Score = 34.7 bits (78), Expect(2) = 4e-13
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +EAL+KQIEYLLRS
Sbjct: 73 YLPTLVDEALVKQIEYLLRS 92
>sp|O24045.1|RBS_MUSAC RecName: Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=RuBisCO small subunit; Flags:
Precursor gi|2258433|gb|AAB63287.1|
ribulose-1,5-bisphosphate carboxylase small subunit
[Musa acuminata]
Length = 180
Score = 65.1 bits (157), Expect(2) = 6e-13
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +K NADLSHL SN RVQCMK PI GVKKFETLSYL
Sbjct: 27 FTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYL 76
Score = 34.3 bits (77), Expect(2) = 6e-13
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP + +EAL+KQIEYLLRS
Sbjct: 75 YLPTMKDEALVKQIEYLLRS 94
>gb|ABA46887.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 161
Score = 63.9 bits (154), Expect(2) = 6e-13
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +K NADLSHL SN RVQCMK PI GV+KFETLSYL
Sbjct: 25 FTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVRKFETLSYL 74
Score = 35.4 bits (80), Expect(2) = 6e-13
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP + +EALLKQIEYLLRS
Sbjct: 73 YLPTMKDEALLKQIEYLLRS 92
>gb|ABA46901.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 181
Score = 64.7 bits (156), Expect(2) = 8e-13
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL SN RVQCMK PI G KKFETLSYL
Sbjct: 28 FTGLKSTSAFPVTRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYL 77
Score = 34.3 bits (77), Expect(2) = 8e-13
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +E LLKQIEYLLRS
Sbjct: 76 YLPTLVDEVLLKQIEYLLRS 95
>gb|ABA46877.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa balbisiana]
Length = 161
Score = 63.9 bits (154), Expect(2) = 1e-12
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL SN RVQCMK PI G K+FETLSYL
Sbjct: 25 FTGLKSTSAFPITRKANADLSHLPSNGGRVQCMKVWPIEGKKRFETLSYL 74
Score = 34.7 bits (78), Expect(2) = 1e-12
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +EAL+KQIEYLLRS
Sbjct: 73 YLPTLVDEALVKQIEYLLRS 92
>gb|ABA46882.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 161
Score = 63.2 bits (152), Expect(2) = 2e-12
Identities = 33/50 (66%), Positives = 36/50 (72%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL N RVQCMK PI G KKFETLSYL
Sbjct: 25 FTGLKSTSAFPVTRKANADLSHLPGNGGRVQCMKVWPIEGKKKFETLSYL 74
Score = 34.7 bits (78), Expect(2) = 2e-12
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +EAL+KQIEYLLRS
Sbjct: 73 YLPTLVDEALVKQIEYLLRS 92
>gb|ABA46883.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 161
Score = 61.6 bits (148), Expect(2) = 2e-12
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +K NADLSHL SN RVQCMK PI G+KK ETLSYL
Sbjct: 25 FTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGLKKLETLSYL 74
Score = 36.2 bits (82), Expect(2) = 2e-12
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +EALLKQIEYLLRS
Sbjct: 73 YLPTLKDEALLKQIEYLLRS 92
>gb|ABA46900.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 180
Score = 64.7 bits (156), Expect(2) = 2e-12
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL SN RVQCMK PI G KKFETLSYL
Sbjct: 27 FTGLKSTSAFPVTRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYL 76
Score = 32.7 bits (73), Expect(2) = 2e-12
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +E L+KQIEYLLRS
Sbjct: 75 YLPTLVDEPLVKQIEYLLRS 94
>gb|ABA46898.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 161
Score = 64.7 bits (156), Expect(2) = 2e-12
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL SN RVQCMK PI G KKFETLSYL
Sbjct: 25 FTGLKSTSAFPVTRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYL 74
Score = 32.7 bits (73), Expect(2) = 2e-12
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +E L+KQIEYLLRS
Sbjct: 73 YLPTLVDEPLVKQIEYLLRS 92
>gb|ABA46889.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group]
Length = 161
Score = 64.7 bits (156), Expect(2) = 4e-12
Identities = 34/50 (68%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL SN RVQCMK PI G KKFETLSYL
Sbjct: 25 FTGLKSTSAFPVTRKANADLSHLPSNGGRVQCMKVWPIEGKKKFETLSYL 74
Score = 32.0 bits (71), Expect(2) = 4e-12
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L E L+KQIEYLLRS
Sbjct: 73 YLPTLVNEPLVKQIEYLLRS 92
>gb|ABA46892.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 161
Score = 63.2 bits (152), Expect(2) = 6e-12
Identities = 33/50 (66%), Positives = 36/50 (72%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL N RVQCMK PI G KKFETLSYL
Sbjct: 25 FTGLKSTSAFPVTRKANADLSHLPGNGGRVQCMKVWPIEGKKKFETLSYL 74
Score = 32.7 bits (73), Expect(2) = 6e-12
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +E L+KQIEYLLRS
Sbjct: 73 YLPTLVDEPLVKQIEYLLRS 92
>gb|ABA46911.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 161
Score = 63.2 bits (152), Expect(2) = 6e-12
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL SN RVQCM+ PI G KKFETLSYL
Sbjct: 25 FTGLKSTSAFPVTRKANADLSHLPSNGGRVQCMEVWPIEGKKKFETLSYL 74
Score = 32.7 bits (73), Expect(2) = 6e-12
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +E L+KQIEYLLRS
Sbjct: 73 YLPTLVDEPLVKQIEYLLRS 92
>gb|ABA46888.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa AAAB Group] gi|76574224|gb|ABA46893.1|
chloroplast ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit [Musa acuminata AAA
Group]
Length = 161
Score = 63.2 bits (152), Expect(2) = 6e-12
Identities = 33/50 (66%), Positives = 36/50 (72%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL N RVQCMK PI G KKFETLSYL
Sbjct: 25 FTGLKSTSAFPVTRKANADLSHLPGNGGRVQCMKVWPIEGKKKFETLSYL 74
Score = 32.7 bits (73), Expect(2) = 6e-12
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +E L+KQIEYLLRS
Sbjct: 73 YLPTLVDEPLVKQIEYLLRS 92
>gb|ABA46910.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata]
Length = 161
Score = 63.2 bits (152), Expect(2) = 6e-12
Identities = 33/50 (66%), Positives = 36/50 (72%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL N RVQCMK PI G KKFETLSYL
Sbjct: 25 FTGLKSTSAFPVTRKANADLSHLPGNGGRVQCMKVWPIEGKKKFETLSYL 74
Score = 32.7 bits (73), Expect(2) = 6e-12
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +E L+KQIEYLLRS
Sbjct: 73 YLPTLVDEPLVKQIEYLLRS 92
>gb|ABA46891.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Musa acuminata AAA Group]
Length = 157
Score = 63.2 bits (152), Expect(2) = 6e-12
Identities = 33/50 (66%), Positives = 36/50 (72%)
Frame = +3
Query: 3 FSGLKPLADAPFLQKANADLSHLLSNSCRVQCMKGGPI*GVKKFETLSYL 152
F+GLK + P +KANADLSHL N RVQCMK PI G KKFETLSYL
Sbjct: 21 FTGLKSTSAFPVTRKANADLSHLPGNGGRVQCMKVWPIEGKKKFETLSYL 70
Score = 32.7 bits (73), Expect(2) = 6e-12
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 151 YLPPLPEEALLKQIEYLLRS 210
YLP L +E L+KQIEYLLRS
Sbjct: 69 YLPTLVDEPLVKQIEYLLRS 88