BLASTX nr result
ID: Zingiber24_contig00047450
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00047450
(301 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004298102.1| PREDICTED: pentatricopeptide repeat-containi... 63 4e-08
ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [S... 60 4e-07
ref|XP_006656740.1| PREDICTED: pentatricopeptide repeat-containi... 59 7e-07
gb|EMJ07903.1| hypothetical protein PRUPE_ppa023974mg [Prunus pe... 59 7e-07
gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays] 59 9e-07
gb|EMT04799.1| hypothetical protein F775_19518 [Aegilops tauschii] 57 2e-06
ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group] g... 56 4e-06
gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japo... 56 4e-06
gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indi... 56 4e-06
ref|XP_004966645.1| PREDICTED: pentatricopeptide repeat-containi... 56 6e-06
ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containi... 56 6e-06
ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containi... 55 7e-06
emb|CBI26570.3| unnamed protein product [Vitis vinifera] 55 7e-06
emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera] 55 7e-06
>ref|XP_004298102.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 1496
Score = 63.2 bits (152), Expect = 4e-08
Identities = 31/61 (50%), Positives = 45/61 (73%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKGIPRSRKLNRFQMKYLRRQHKSPAA 181
KKFARLALLS+E RE+++ D++GRKEK EKM+ +G R++NR + K +R ++ PA
Sbjct: 1423 KKFARLALLSDEKRERVIQADIEGRKEKLEKMRKRGNVDPRRVNRIK-KLRKRTYRRPAM 1481
Query: 182 L 184
L
Sbjct: 1482 L 1482
>ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein
SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 59.7 bits (143), Expect = 4e-07
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKGIPRSRKLNRFQM--KYLRRQHKS 172
KKF+RLALLSEE R++++ D++GRKEK E+MK KGI +RK R K++R Q ++
Sbjct: 1379 KKFSRLALLSEECRDEVIKADIKGRKEKLERMKKKGIVTARKSKRRAQRGKFVREQEQN 1437
>ref|XP_006656740.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Oryza brachyantha]
Length = 1216
Score = 58.9 bits (141), Expect = 7e-07
Identities = 31/57 (54%), Positives = 46/57 (80%), Gaps = 3/57 (5%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKGI---PRSRKLNRFQMKYLRRQ 163
KKF+RLALLSEESR++++ D+QGRKEK EKMK +G+ RS+K +R + K++++Q
Sbjct: 1154 KKFSRLALLSEESRDEVIKADIQGRKEKLEKMKRQGLAIAKRSKKGHR-RGKFIKQQ 1209
>gb|EMJ07903.1| hypothetical protein PRUPE_ppa023974mg [Prunus persica]
Length = 1353
Score = 58.9 bits (141), Expect = 7e-07
Identities = 31/62 (50%), Positives = 46/62 (74%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKGIPRSRKLNRFQMKYLRRQHKSPAA 181
KKFARLALLS+E REK++ +D++GRKEK EKMK P R+++R + K +R++ P+
Sbjct: 1282 KKFARLALLSDEKREKVIQSDIEGRKEKLEKMKENDNP--RRVSRIK-KLRKRKYVRPST 1338
Query: 182 LN 187
L+
Sbjct: 1339 LS 1340
>gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKGIPRSRK 127
KKF+RLALLSEE R++++ D+QGRKEK E+MK KGI +RK
Sbjct: 1379 KKFSRLALLSEECRDEVIKADIQGRKEKLERMKKKGIVTARK 1420
>gb|EMT04799.1| hypothetical protein F775_19518 [Aegilops tauschii]
Length = 1216
Score = 57.4 bits (137), Expect = 2e-06
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKG--IPRSRKLNRFQMKYLRRQ 163
KKF+RLA+LSEESR K + D++GRK+K E++K KG IPR K + K++R Q
Sbjct: 1154 KKFSRLAMLSEESRAKFIKADIKGRKDKLERIKEKGLVIPRKSKRGPRRAKFVREQ 1209
>ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza
sativa Japonica Group] gi|113595105|dbj|BAF18979.1|
Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 56.2 bits (134), Expect = 4e-06
Identities = 25/45 (55%), Positives = 37/45 (82%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKGIPRSRKLNR 136
KKF+RLALLSEESR++++ D++GRKEK EKMK +G+ +++ R
Sbjct: 1221 KKFSRLALLSEESRDEVIKADIKGRKEKLEKMKKQGLAIAKRSKR 1265
>gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 56.2 bits (134), Expect = 4e-06
Identities = 25/45 (55%), Positives = 37/45 (82%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKGIPRSRKLNR 136
KKF+RLALLSEESR++++ D++GRKEK EKMK +G+ +++ R
Sbjct: 1381 KKFSRLALLSEESRDEVIKADIKGRKEKLEKMKKQGLAIAKRSKR 1425
>gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 56.2 bits (134), Expect = 4e-06
Identities = 25/45 (55%), Positives = 37/45 (82%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKGIPRSRKLNR 136
KKF+RLALLSEESR++++ D++GRKEK EKMK +G+ +++ R
Sbjct: 515 KKFSRLALLSEESRDEVIKADIKGRKEKLEKMKKQGLAIAKRSKR 559
>ref|XP_004966645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Setaria italica]
Length = 1410
Score = 55.8 bits (133), Expect = 6e-06
Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKGIPRSRKLNR--FQMKYLRRQHKSP 175
KKF++LALLSEESR++ + D+QGRKEK ++MK K + +R R + K++R Q +S
Sbjct: 1346 KKFSKLALLSEESRDEAIKADIQGRKEKLDRMKKKDLVTARNSKRRPQRAKFVREQGQSM 1405
Query: 176 AALN 187
A++
Sbjct: 1406 KAVS 1409
>ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 55.8 bits (133), Expect = 6e-06
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAKGIPRSRKLNR--FQMKYLRRQ 163
KKF+RLALLSEESR ++ D+QGRKEK KMK +G+ SR+ + + K++R Q
Sbjct: 1223 KKFSRLALLSEESRATVIKADIQGRKEKLAKMKTQGLVISRRSQKRPRRAKFVREQ 1278
>ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 55.5 bits (132), Expect = 7e-06
Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAK-GIPRSRKLNRFQMKYLR 157
KKFARLALL +E R+K++ D++G KEK EKMK K G+ R RKL R K++R
Sbjct: 1381 KKFARLALLPDEKRDKVIRADIEGGKEKLEKMKKKVGVKRRRKLVR--RKFIR 1431
>emb|CBI26570.3| unnamed protein product [Vitis vinifera]
Length = 1042
Score = 55.5 bits (132), Expect = 7e-06
Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAK-GIPRSRKLNRFQMKYLR 157
KKFARLALL +E R+K++ D++G KEK EKMK K G+ R RKL R K++R
Sbjct: 971 KKFARLALLPDEKRDKVIRADIEGGKEKLEKMKKKVGVKRRRKLVR--RKFIR 1021
>emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 55.5 bits (132), Expect = 7e-06
Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +2
Query: 2 KKFARLALLSEESREKIMNTDLQGRKEKTEKMKAK-GIPRSRKLNRFQMKYLR 157
KKFARLALL +E R+K++ D++G KEK EKMK K G+ R RKL R K++R
Sbjct: 1433 KKFARLALLPDEKRDKVIRADIEGGKEKLEKMKKKVGVKRRRKLVR--RKFIR 1483