BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00047075
         (538 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]        229   2e-58
gb|AFW65855.1| hypothetical protein ZEAMMB73_620530 [Zea mays]        229   2e-58
ref|XP_004966367.1| PREDICTED: pentatricopeptide repeat-containi...   228   7e-58
ref|XP_006647005.1| PREDICTED: pentatricopeptide repeat-containi...   222   4e-56
ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [S...   221   8e-56
ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group] g...   220   1e-55
gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japo...   220   1e-55
gb|EMT03572.1| Pentatricopeptide repeat-containing protein [Aegi...   219   3e-55
dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]    216   2e-54
gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japo...   214   1e-53
gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indi...   214   1e-53
ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containi...   212   5e-53
ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   171   1e-40
ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat...   171   1e-40
ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containi...   169   5e-40
gb|EOY23065.1| Pentatricopeptide repeat-containing protein, puta...   163   3e-38
gb|EOY25899.1| Pentatricopeptide repeat superfamily protein [The...   162   6e-38
ref|XP_002517668.1| pentatricopeptide repeat-containing protein,...   161   8e-38
ref|XP_006304931.1| hypothetical protein CARUB_v10011411mg [Caps...   161   1e-37
ref|XP_004240796.1| PREDICTED: pentatricopeptide repeat-containi...   161   1e-37

>gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  229 bits (585), Expect = 2e-58
 Identities = 111/180 (61%), Positives = 141/180 (78%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA-WNAIIDGYCKIGDIDIARSLFEK 177
           ++ NL VALI+MYAK G I  A+ +FD++     P  WNAIIDGYCK+G +D+ARSLF++
Sbjct: 270 MTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQ 329

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           M A D+I+FNSM+TGYIH  RL++ALQLF ++R  G++ D FTVVSLLTACASLGAL  G
Sbjct: 330 MGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHG 389

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           + LHA IE+  V++DVYLGT+LLDMY KCG+VD+A  VF RM ERD  TWT +I+GLA N
Sbjct: 390 RALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFN 449



 Score =  100 bits (250), Expect = 2e-19
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           +A  LI+MYA  G    AR+ FD +  K A  W  +I G  + G +D AR L  +    +
Sbjct: 142 VANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERN 201

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           ++S+ S++ GY    R  +A+  F+ + + G+ PD+  V+  L+AC+ L  L  G++LH 
Sbjct: 202 VVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHL 261

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVE-RDAQTWTVIISG 525
            + +  ++    L  +L+DMY KCG + QA  VF  +   +  + W  II G
Sbjct: 262 LVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDG 313



 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 45/179 (25%), Positives = 89/179 (49%), Gaps = 6/179 (3%)
 Frame = +1

Query: 19  VALINMYAKGGSIKSARQIFDSMNNKIAPA----WNAIIDGYCKIGDIDIARSLFEKMNA 186
           V+L+   A  G++   R +  S+  +I         A++D Y K G +D A ++F +M  
Sbjct: 374 VSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGE 433

Query: 187 PDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKIL 366
            D+ ++ +M+ G       K+AL+ F +++  G QP   T +++LTAC+    L +G++ 
Sbjct: 434 RDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLH 493

Query: 367 HAHIEECF-VKQDVYLGTSLLDMYTKCGKVDQAM-LVFGRMVERDAQTWTVIISGLAIN 537
              +     +   V     ++D+  + G +D+AM LV    ++ +A  W  I+S   ++
Sbjct: 494 FNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVH 552


>gb|AFW65855.1| hypothetical protein ZEAMMB73_620530 [Zea mays]
          Length = 501

 Score =  229 bits (585), Expect = 2e-58
 Identities = 111/180 (61%), Positives = 141/180 (78%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA-WNAIIDGYCKIGDIDIARSLFEK 177
           ++ NL VALI+MYAK G I  A+ +FD++     P  WNAIIDGYCK+G +D+ARSLF++
Sbjct: 270 MTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQ 329

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           M A D+I+FNSM+TGYIH  RL++ALQLF ++R  G++ D FTVVSLLTACASLGAL  G
Sbjct: 330 MGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHG 389

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           + LHA IE+  V++DVYLGT+LLDMY KCG+VD+A  VF RM ERD  TWT +I+GLA N
Sbjct: 390 RALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFN 449



 Score =  100 bits (250), Expect = 2e-19
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           +A  LI+MYA  G    AR+ FD +  K A  W  +I G  + G +D AR L  +    +
Sbjct: 142 VANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERN 201

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           ++S+ S++ GY    R  +A+  F+ + + G+ PD+  V+  L+AC+ L  L  G++LH 
Sbjct: 202 VVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHL 261

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVE-RDAQTWTVIISG 525
            + +  ++    L  +L+DMY KCG + QA  VF  +   +  + W  II G
Sbjct: 262 LVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDG 313



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
 Frame = +1

Query: 19  VALINMYAKGGSIKSARQIFDSMNNKIAPA----WNAIIDGYCKIGDIDIARSLFEKMNA 186
           V+L+   A  G++   R +  S+  +I         A++D Y K G +D A ++F +M  
Sbjct: 374 VSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGE 433

Query: 187 PDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQ 354
            D+ ++ +M+ G       K+AL+ F +++  G QP   T +++LTAC+    L +
Sbjct: 434 RDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDE 489


>ref|XP_004966367.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Setaria italica]
          Length = 741

 Score =  228 bits (581), Expect = 7e-58
 Identities = 111/180 (61%), Positives = 144/180 (80%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA-WNAIIDGYCKIGDIDIARSLFEK 177
           +S NL VALI+MYAK G I  A+ IFD++     P  WNAIIDGYCK+G +D+ARSLF++
Sbjct: 269 MSDNLVVALIDMYAKCGDIACAQGIFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQ 328

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           M+APD+I+FNSM+TGYIH  RL++AL LF ++R   L+ D FTVVSLLTACASLGAL QG
Sbjct: 329 MDAPDVITFNSMITGYIHSGRLRDALVLFIQMRRHDLRADNFTVVSLLTACASLGALPQG 388

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           + LHA IE+  V++DVYLGT+L+DMY KCG+VD+A +VF RM ERD +TW+ +I+GLA +
Sbjct: 389 RALHASIEQRLVEEDVYLGTALVDMYMKCGRVDEATIVFQRMGERDVRTWSAMIAGLAFH 448



 Score =  105 bits (263), Expect = 5e-21
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 1/172 (0%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           +A  LI+MYA  G   SAR++FD +  K    W  +I G  K+G +D AR L  +    +
Sbjct: 141 VANPLIHMYAALGLTDSARRVFDEIPVKDPVVWTTVIGGLAKMGMLDEARRLLVQAPERN 200

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           +IS+ S++ GY    R  EA+  F+ + + G+ PD+ TV+ +L+AC+ L  L  G+ LH 
Sbjct: 201 VISWTSLIAGYSRAGRAAEAVDCFNSMLSDGVAPDEVTVICVLSACSQLKDLDIGRSLHF 260

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVE-RDAQTWTVIISG 525
            + E  ++    L  +L+DMY KCG +  A  +F  +   +  + W  II G
Sbjct: 261 LVGEKKIRMSDNLVVALIDMYAKCGDIACAQGIFDAVGRGQKPEPWNAIIDG 312



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 43/179 (24%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
 Frame = +1

Query: 19  VALINMYAKGGSIKSARQIFDSMNNKIAPA----WNAIIDGYCKIGDIDIARSLFEKMNA 186
           V+L+   A  G++   R +  S+  ++         A++D Y K G +D A  +F++M  
Sbjct: 373 VSLLTACASLGALPQGRALHASIEQRLVEEDVYLGTALVDMYMKCGRVDEATIVFQRMGE 432

Query: 187 PDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKIL 366
            D+ ++++M+ G       K AL+ F +++  G QP+  T +++LTAC+    L++G++ 
Sbjct: 433 RDVRTWSAMIAGLAFHGMGKVALEYFCQMKHDGFQPNSVTYIAVLTACSHSCLLNEGRMH 492

Query: 367 HAHIEECF-VKQDVYLGTSLLDMYTKCGKVDQAM-LVFGRMVERDAQTWTVIISGLAIN 537
              +     ++  +     ++D+  + G +D+AM LV    ++ +A  W  I+S   ++
Sbjct: 493 FNEMRSLHRIQPQIEHYGCMIDLLARSGLLDEAMNLVQTMPMQPNAVIWGSILSACRVH 551


>ref|XP_006647005.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Oryza brachyantha]
          Length = 745

 Score =  222 bits (566), Expect = 4e-56
 Identities = 111/180 (61%), Positives = 136/180 (75%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAP-AWNAIIDGYCKIGDIDIARSLFEK 177
           +  NL VALINMYAK G    A+Q+FD+M     P +WNAIIDGYCK G ID+ARSLF++
Sbjct: 273 MDENLVVALINMYAKCGDFVHAQQVFDAMGRGPRPHSWNAIIDGYCKHGHIDVARSLFDQ 332

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           M   D+I+FNSM+TGYIH  +L+EAL LF  +R   L+ D FTVV LLTACASLGAL QG
Sbjct: 333 MEVCDLITFNSMMTGYIHSGQLREALLLFMNMRRHDLRVDSFTVVCLLTACASLGALPQG 392

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           + LHA IE+  V+ D+YLGT+LLDMY KCG+VD+A +VF RM +RD  TWT +ISGLA N
Sbjct: 393 RALHAFIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMISGLAFN 452



 Score =  103 bits (258), Expect = 2e-20
 Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 1/172 (0%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           +A +LI+MY + G    AR+ FD +  K A AW  +I G  K+G +  A+ L  +    D
Sbjct: 145 VAHSLIHMYVELGLAGDARRAFDEITVKDAVAWTMVISGLAKMGMLGDAQLLLSQAPVRD 204

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           +IS+ S++  Y    R  EA+  F  + + G+ PD+ TV+ +L+ACA L  L  G  LH 
Sbjct: 205 VISWTSLIAAYTRANRANEAVGCFKSMLSEGIAPDEVTVIGVLSACAQLKDLELGHSLHL 264

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERD-AQTWTVIISG 525
            I+E  +  D  L  +L++MY KCG    A  VF  M       +W  II G
Sbjct: 265 LIKEKGMLMDENLVVALINMYAKCGDFVHAQQVFDAMGRGPRPHSWNAIIDG 316



 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 48/188 (25%), Positives = 98/188 (52%), Gaps = 9/188 (4%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA----WNAIIDGYCKIGDIDIARSL 168
           V S   V L+   A  G++   R +   +  ++  A      A++D Y K G +D A  +
Sbjct: 371 VDSFTVVCLLTACASLGALPQGRALHAFIEQRLVEADIYLGTALLDMYMKCGRVDEATIV 430

Query: 169 FEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGAL 348
           F++M   D+ ++ +M++G       K AL+ F ++R   +QP+  T +++LTAC+    L
Sbjct: 431 FQRMGKRDVHTWTAMISGLAFNGMGKAALEHFYQMRRDAVQPNSVTYIAVLTACSHSCLL 490

Query: 349 SQGKILHAHIEECFVKQDV--YLG--TSLLDMYTKCGKVDQAM-LVFGRMVERDAQTWTV 513
           S+G++   + +E  +  ++  ++G    ++D+  + G +D+AM LV    ++ +A  W  
Sbjct: 491 SEGRL---YFDEMRILYNIHPHIGHYGCMIDLLGRSGHLDEAMDLVNTMPIQPNAVIWAS 547

Query: 514 IISGLAIN 537
           I+S   ++
Sbjct: 548 ILSACRVH 555


>ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
           gi|241917202|gb|EER90346.1| hypothetical protein
           SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  221 bits (563), Expect = 8e-56
 Identities = 108/180 (60%), Positives = 138/180 (76%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA-WNAIIDGYCKIGDIDIARSLFEK 177
           ++  L V LI+MYAK G I  A+ +FD++     P  WN IIDGYCK+G +DIARSLF++
Sbjct: 268 MTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQ 327

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           M A D+I+FNSM+TGYIH  RL++ALQLF +LR  G++ D FTVVSLLTACASLGAL QG
Sbjct: 328 MGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQG 387

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           + LHA IE+  V++DVYL T+L+DMY KCG+VD+A  VF RM ERD  TW+ +I+GLA N
Sbjct: 388 RALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFN 447



 Score =  101 bits (252), Expect = 1e-19
 Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 1/172 (0%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           +A  LI+MYA  G    AR+ FD +  K A  W  +I G  + G +D AR L  +    +
Sbjct: 140 VANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERN 199

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           ++S+ S++ GY    R  +A+  F+ + + G++PD+  V+  L+AC+ L  L  G++LH 
Sbjct: 200 VVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHL 259

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVE-RDAQTWTVIISG 525
            + +  ++    L  +L+DMY KCG + QA  VF  +   +  + W VII G
Sbjct: 260 LVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDG 311



 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 15/188 (7%)
 Frame = +1

Query: 19  VALINMYAKGGSIKSARQIFDSMNNKIAPA----WNAIIDGYCKIGDIDIARSLFEKMNA 186
           V+L+   A  G++   R +  S+  +I         A++D Y K G +D A ++F +M  
Sbjct: 372 VSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGE 431

Query: 187 PDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGK-- 360
            D+ ++++M+ G        +AL+ F +++  G QP   T +++LTAC+    L++G+  
Sbjct: 432 RDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQH 491

Query: 361 --------ILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAM-LVFGRMVERDAQTWTV 513
                    LH  IE             ++D+  + G +D+AM LV    ++ +A  W  
Sbjct: 492 FNEMRSLHKLHPQIEHY---------GCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWAS 542

Query: 514 IISGLAIN 537
           I+S   ++
Sbjct: 543 ILSACRVH 550


>ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
           gi|46390971|dbj|BAD16484.1| putative pentatricopeptide
           (PPR) repeat-containing protein [Oryza sativa Japonica
           Group] gi|50726401|dbj|BAD34012.1| putative
           pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group] gi|255670678|dbj|BAF08069.2|
           Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  220 bits (561), Expect = 1e-55
 Identities = 109/179 (60%), Positives = 137/179 (76%), Gaps = 1/179 (0%)
 Frame = +1

Query: 4   SSNLAVALINMYAKGGSIKSARQIFDSMNNKIAP-AWNAIIDGYCKIGDIDIARSLFEKM 180
           S NL VALI+MYAK G    A+Q+FD++     P +WNAIIDGYCK G +D+ARSLF++M
Sbjct: 273 SENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEM 332

Query: 181 NAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGK 360
              DII+FNSM+TGYIH  +L+EAL LF  +R   L+ D FTVV+LLTACASLGAL QG+
Sbjct: 333 EVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGR 392

Query: 361 ILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
            LHA IE+  V+ D+YLGT+LLDMY KCG+VD+A +VF RM +RD  TWT +I+GLA N
Sbjct: 393 ALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFN 451



 Score =  105 bits (263), Expect = 5e-21
 Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 1/169 (0%)
 Frame = +1

Query: 22  ALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPDIIS 201
           +LI+MY + G    AR+ FD ++ K A AW  +I G  K+G +   + L  +    D+IS
Sbjct: 147 SLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVIS 206

Query: 202 FNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHAHIE 381
           + S++  Y    R +EA+  F  + + G+ PD+ TV+++L+ACA L  L  G+ LH  +E
Sbjct: 207 WTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVE 266

Query: 382 ECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERD-AQTWTVIISG 525
           E  +     L  +L+DMY KCG    A  VF  +      Q+W  II G
Sbjct: 267 EKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDG 315



 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 44/185 (23%), Positives = 93/185 (50%), Gaps = 6/185 (3%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA----WNAIIDGYCKIGDIDIARSL 168
           V +   V L+   A  G+++  R +   +  ++  A      A++D Y K G +D A  +
Sbjct: 370 VDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIV 429

Query: 169 FEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGAL 348
           F++M   D+ ++ +M+ G       K AL+ F ++R  G QP+  + +++LTAC+    L
Sbjct: 430 FQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLL 489

Query: 349 SQGKILHAHIEECF-VKQDVYLGTSLLDMYTKCGKVDQAM-LVFGRMVERDAQTWTVIIS 522
           ++G++    +   + +   +     ++D+  + G +D+AM LV    ++ +A  W  I+S
Sbjct: 490 NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILS 549

Query: 523 GLAIN 537
              ++
Sbjct: 550 ACRVH 554


>gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  220 bits (561), Expect = 1e-55
 Identities = 109/179 (60%), Positives = 137/179 (76%), Gaps = 1/179 (0%)
 Frame = +1

Query: 4   SSNLAVALINMYAKGGSIKSARQIFDSMNNKIAP-AWNAIIDGYCKIGDIDIARSLFEKM 180
           S NL VALI+MYAK G    A+Q+FD++     P +WNAIIDGYCK G +D+ARSLF++M
Sbjct: 273 SENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEM 332

Query: 181 NAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGK 360
              DII+FNSM+TGYIH  +L+EAL LF  +R   L+ D FTVV+LLTACASLGAL QG+
Sbjct: 333 EVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGR 392

Query: 361 ILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
            LHA IE+  V+ D+YLGT+LLDMY KCG+VD+A +VF RM +RD  TWT +I+GLA N
Sbjct: 393 ALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFN 451



 Score =  105 bits (263), Expect = 5e-21
 Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 1/169 (0%)
 Frame = +1

Query: 22  ALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPDIIS 201
           +LI+MY + G    AR+ FD ++ K A AW  +I G  K+G +   + L  +    D+IS
Sbjct: 147 SLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVIS 206

Query: 202 FNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHAHIE 381
           + S++  Y    R +EA+  F  + + G+ PD+ TV+++L+ACA L  L  G+ LH  +E
Sbjct: 207 WTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVE 266

Query: 382 ECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERD-AQTWTVIISG 525
           E  +     L  +L+DMY KCG    A  VF  +      Q+W  II G
Sbjct: 267 EKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDG 315



 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 44/185 (23%), Positives = 93/185 (50%), Gaps = 6/185 (3%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA----WNAIIDGYCKIGDIDIARSL 168
           V +   V L+   A  G+++  R +   +  ++  A      A++D Y K G +D A  +
Sbjct: 370 VDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIV 429

Query: 169 FEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGAL 348
           F++M   D+ ++ +M+ G       K AL+ F ++R  G QP+  + +++LTAC+    L
Sbjct: 430 FQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLL 489

Query: 349 SQGKILHAHIEECF-VKQDVYLGTSLLDMYTKCGKVDQAM-LVFGRMVERDAQTWTVIIS 522
           ++G++    +   + +   +     ++D+  + G +D+AM LV    ++ +A  W  I+S
Sbjct: 490 NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILS 549

Query: 523 GLAIN 537
              ++
Sbjct: 550 ACRVH 554


>gb|EMT03572.1| Pentatricopeptide repeat-containing protein [Aegilops tauschii]
          Length = 800

 Score =  219 bits (558), Expect = 3e-55
 Identities = 108/180 (60%), Positives = 139/180 (77%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA-WNAIIDGYCKIGDIDIARSLFEK 177
           VS  L VALI+MYAK G+I  AR++FD++     P  WNA+IDGYCK+G +DIARSLF++
Sbjct: 270 VSDRLVVALIDMYAKCGNIGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQ 329

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           M   DII+FNS++TGYIHG RL+EAL LF+K+R  GL+ D FT+V LLTA ASLGAL QG
Sbjct: 330 MEDHDIITFNSLITGYIHGGRLREALLLFTKMRRHGLRADNFTMVGLLTASASLGALPQG 389

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           + LHA IE+  V++DVYLGT+LLDMY KCG+V++A + F +M  RD  TW+ +I GLA N
Sbjct: 390 RALHACIEQRLVERDVYLGTALLDMYMKCGRVEEATVAFKQMSVRDVHTWSAMIGGLAFN 449



 Score =  105 bits (261), Expect = 9e-21
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 1/172 (0%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           +A  LI+MYA+ G    AR+ FD  + K A AW  +I G  K G +D AR L  +  A +
Sbjct: 142 IASPLIHMYAELGLPGDARRAFDEASVKDAVAWTTVISGLAKTGLLDDARRLLAQAPARN 201

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           ++++  +++ Y    R  +A+  F+++ + G+ PD+ TV+ +L+ACA L  L  G  LH 
Sbjct: 202 VVAWTGLISAYSRAGRAADAVDCFNRMLSDGIAPDEVTVIGVLSACAQLKDLDFGCSLHM 261

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVE-RDAQTWTVIISG 525
            + E  +     L  +L+DMY KCG + +A  VF  +   R  Q W  +I G
Sbjct: 262 LVGERRMLVSDRLVVALIDMYAKCGNIGRAREVFDALGRGRGPQPWNAMIDG 313


>dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  216 bits (551), Expect = 2e-54
 Identities = 106/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA-WNAIIDGYCKIGDIDIARSLFEK 177
           +S  L VALI+MYAK G    AR++FD++     P  WNA+IDGYCK+G +DIARSLF++
Sbjct: 270 MSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQ 329

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           M   D+I+FNS++TGYIHG RL+EAL LF+K+R  GL  D FT+V LLTA ASLGAL QG
Sbjct: 330 MEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQG 389

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           + LHA IE+  V++DVYLGT+LLDMY KCG+V++AM+ F +M  RD  TW+ +I GLA N
Sbjct: 390 RALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFN 449



 Score =  102 bits (254), Expect = 6e-20
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           +A  +I+MYA+ G    AR+ FD  + K   AW  +I G  K+G +D AR L  +    +
Sbjct: 142 IASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRN 201

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           ++++  +++GY    R  EA+  F+ + + G+ PD+ TV+ +L+AC  L  L+ G  LH 
Sbjct: 202 VVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHM 261

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVE-RDAQTWTVIISG 525
            + +  +     L  +L+DMY KCG   +A  VF  +   R  Q W  +I G
Sbjct: 262 LVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDG 313


>gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  214 bits (545), Expect = 1e-53
 Identities = 106/180 (58%), Positives = 136/180 (75%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAP-AWNAIIDGYCKIGDIDIARSLFEK 177
           +S NL VALI+MYAK G    AR++FD++     P +WNAIIDGYCK G +D+ARSLF++
Sbjct: 211 MSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQ 270

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           M   DII+FNSM+TGYIH  +L+EAL LF  +R   L+ D FTVVSLL+ACASLGAL QG
Sbjct: 271 MEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQG 330

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           + LHA IE   V+ D+Y+GT+LLDMY KCG+V++A +VF RM +RD   WT +I+GLA N
Sbjct: 331 RALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFN 390



 Score =  104 bits (259), Expect = 1e-20
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 1/172 (0%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           +A +LI+MY + G     R+ FD +  K A +W  +I G  K+G +  AR L  +    D
Sbjct: 83  VANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRD 142

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           +IS+ S++  Y    R KEA+  F  + + G+ PD  TV+ +L+AC+ L  L  G  LH 
Sbjct: 143 VISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHL 202

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVE-RDAQTWTVIISG 525
            ++E  +     L  +L+DMY KCG    A  VF  +   R  Q+W  II G
Sbjct: 203 LVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDG 254



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 40/185 (21%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA----WNAIIDGYCKIGDIDIARSL 168
           V +   V+L++  A  G++   R +   +  ++         A++D Y K G ++ A  +
Sbjct: 309 VDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIV 368

Query: 169 FEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGAL 348
           F++M   D+ ++ +M+ G       K  L+ F ++R  G QP+  + +++LTAC+    L
Sbjct: 369 FQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLL 428

Query: 349 SQGKILHAHIEECF-VKQDVYLGTSLLDMYTKCGKVDQAM-LVFGRMVERDAQTWTVIIS 522
           ++G++    +   + +   +     ++D+  + G +D+AM LV    ++ ++  W  I+S
Sbjct: 429 NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILS 488

Query: 523 GLAIN 537
              ++
Sbjct: 489 ACRVH 493



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
 Frame = +1

Query: 112  NAIIDGYCKIGD-IDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGL 288
            N+++D Y  IGD +D  ++L + ++  D+IS+NS+++ Y     +KEA+    ++   G 
Sbjct: 873  NSLVDLYSAIGDSVDTVKALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQMLWHGK 931

Query: 289  QPDKFTVVSLLTACASLGALSQGKILHAHIEEC-FVKQDVYLGTSLLDMYTKCGKVDQAM 465
             P   + VSLL      G    G  +H  + +  F    V++ T+L+DMY KC   D ++
Sbjct: 932  MPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSL 991

Query: 466  LVFGRM 483
             +F  +
Sbjct: 992  AIFNEI 997


>gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  214 bits (545), Expect = 1e-53
 Identities = 106/180 (58%), Positives = 136/180 (75%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAP-AWNAIIDGYCKIGDIDIARSLFEK 177
           +S NL VALI+MYAK G    AR++FD++     P +WNAIIDGYCK G +D+ARSLF++
Sbjct: 273 MSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQ 332

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           M   DII+FNSM+TGYIH  +L+EAL LF  +R   L+ D FTVVSLL+ACASLGAL QG
Sbjct: 333 MEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQG 392

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           + LHA IE   V+ D+Y+GT+LLDMY KCG+V++A +VF RM +RD   WT +I+GLA N
Sbjct: 393 RALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFN 452



 Score =  105 bits (261), Expect = 9e-21
 Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 1/172 (0%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           +A +LI+MY + G     R+ FD +  K A +W  +I G  K+G +  AR L  +    D
Sbjct: 145 VANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRD 204

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           +IS+ S++  Y    R KEA+  F  + + G+ PD  TV+ +L+AC+ L  L  G  LH+
Sbjct: 205 VISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHS 264

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVE-RDAQTWTVIISG 525
            ++E  +     L  +L+DMY KCG    A  VF  +   R  Q+W  II G
Sbjct: 265 LVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDG 316



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 40/185 (21%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPA----WNAIIDGYCKIGDIDIARSL 168
           V +   V+L++  A  G++   R +   +  ++         A++D Y K G ++ A  +
Sbjct: 371 VDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIV 430

Query: 169 FEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGAL 348
           F++M   D+ ++ +M+ G       K  L+ F ++R  G QP+  + +++LTAC+    L
Sbjct: 431 FQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLL 490

Query: 349 SQGKILHAHIEECF-VKQDVYLGTSLLDMYTKCGKVDQAM-LVFGRMVERDAQTWTVIIS 522
           ++G++    +   + +   +     ++D+  + G +D+AM LV    ++ ++  W  I+S
Sbjct: 491 NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILS 550

Query: 523 GLAIN 537
              ++
Sbjct: 551 ACRVH 555



 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
 Frame = +1

Query: 112  NAIIDGYCKIGD-IDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGL 288
            N+++D Y  IGD +D  ++L + ++  D+IS+NS+++ Y     +KEA+    ++   G 
Sbjct: 935  NSLVDLYSAIGDSVDTVKALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQMLWHGK 993

Query: 289  QPDKFTVVSLLTACASLGALSQGKILHAHIEEC-FVKQDVYLGTSLLDMYTKCGKVDQAM 465
             P   + VSLL      G    G  +H  + +  F    V++ T+L+DMY KC   D ++
Sbjct: 994  MPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSL 1053

Query: 466  LVFGRM 483
             +F  +
Sbjct: 1054 AIFNEI 1059


>ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  212 bits (539), Expect = 5e-53
 Identities = 103/180 (57%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAP-AWNAIIDGYCKIGDIDIARSLFEK 177
           +S  L VALI+MYAK G I  A ++FD++     P +WNA+IDGYCK+G +D+AR LF++
Sbjct: 270 MSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQ 329

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           M   D+++FNS++TGYIHG RL+EAL LF ++R   L+ D FT+VSLLTACASLGAL QG
Sbjct: 330 MEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQG 389

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           + LHA IE+  V+ D+YLGT+LLDMY KCG+V++A LVF  M  RD  TW+ +I+GLA N
Sbjct: 390 RALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFN 449



 Score =  108 bits (269), Expect = 1e-21
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 1/168 (0%)
 Frame = +1

Query: 25  LINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPDIISF 204
           +I+MY + G    AR+ FD +  K A AW  +I G  K+G +D A  L     A ++IS+
Sbjct: 146 IIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISW 205

Query: 205 NSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHAHIEE 384
             +++GY    R  EA+  F+ + + G++PD+ TV+ LL+ACA L  L  G+ LH  + E
Sbjct: 206 TGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGE 265

Query: 385 CFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVE-RDAQTWTVIISG 525
             +     L  +L+DMY KCG + +A  VF  +   R  Q+W  +I G
Sbjct: 266 KGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDG 313



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 44/183 (24%), Positives = 93/183 (50%), Gaps = 10/183 (5%)
 Frame = +1

Query: 19  VALINMYAKGGSIKSARQIFDSMNNKIAPA----WNAIIDGYCKIGDIDIARSLFEKMNA 186
           V+L+   A  G++   R +   +  ++         A++D Y K G ++ A  +F+ M+ 
Sbjct: 374 VSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSV 433

Query: 187 PDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKIL 366
            D+ ++++M+ G       K AL+ F  ++  G QP+  T +++LTAC+    L +G++ 
Sbjct: 434 RDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRL- 492

Query: 367 HAHIEECFVKQDV-----YLGTSLLDMYTKCGKVDQAM-LVFGRMVERDAQTWTVIISGL 528
             + EE  +  ++     + G  ++D+  + G +D+AM LV    ++ +A  W  I+S  
Sbjct: 493 --YFEEMRLLHNIRPLIEHYG-CMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSAC 549

Query: 529 AIN 537
            ++
Sbjct: 550 RVH 552


>ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  171 bits (433), Expect = 1e-40
 Identities = 84/181 (46%), Positives = 124/181 (68%), Gaps = 2/181 (1%)
 Frame = +1

Query: 1   VSSNLAV--ALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFE 174
           V SNL +  A+I+MYA  G + SA  IF SMNN+   +W  I+ G+  +G+ID+AR+ F+
Sbjct: 271 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 330

Query: 175 KMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQ 354
           KM   D +S+ +M+ GYI   R KEAL+LF  ++A  ++PD+FT+VS+LTACA LGAL  
Sbjct: 331 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 390

Query: 355 GKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAI 534
           G+ +  +I+   +K D+++  +L+DMY KCG VD+A  +F  M +RD  TWT +I GLA+
Sbjct: 391 GEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAV 450

Query: 535 N 537
           N
Sbjct: 451 N 451



 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 44/137 (32%), Positives = 82/137 (59%)
 Frame = +1

Query: 115 AIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQP 294
           A++  Y   G +D AR +F+     D+I++N +++ Y    + +E+ +LF  +    + P
Sbjct: 179 ALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLP 238

Query: 295 DKFTVVSLLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVF 474
              T+V +L+AC+ L  L  GK +H++++ C V+ ++ L  +++DMY  CG++D A+ +F
Sbjct: 239 TTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIF 298

Query: 475 GRMVERDAQTWTVIISG 525
             M  RD  +WT I+SG
Sbjct: 299 RSMNNRDIISWTTIVSG 315



 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 40/127 (31%), Positives = 71/127 (55%)
 Frame = +1

Query: 142 GDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLL 321
           GD   AR LF+++  P++  +N+M+ GY      +  + L+ ++   G++PD++T   L 
Sbjct: 87  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146

Query: 322 TACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQ 501
                  AL  G+ LH H+ +  ++ +V++ T+L+ MY  CG++D A  VF    + D  
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206

Query: 502 TWTVIIS 522
           TW +IIS
Sbjct: 207 TWNMIIS 213



 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 37/143 (25%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           NA+ID Y K GD+D A S+F +M+  D  ++ +M+ G       ++AL +FS +    + 
Sbjct: 411 NALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL 470

Query: 292 PDKFTVVSLLTACASLGALSQG-KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAML 468
           PD+ T + +L+AC   G + +G K       +  ++ ++     L+D+  + G++ +A  
Sbjct: 471 PDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYE 530

Query: 469 VFGRM-VERDAQTWTVIISGLAI 534
           V   M ++ ++  W  +++G  +
Sbjct: 531 VIENMPIKANSIVWGALLAGCRV 553


>ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  171 bits (433), Expect = 1e-40
 Identities = 84/181 (46%), Positives = 124/181 (68%), Gaps = 2/181 (1%)
 Frame = +1

Query: 1   VSSNLAV--ALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFE 174
           V SNL +  A+I+MYA  G + SA  IF SMNN+   +W  I+ G+  +G+ID+AR+ F+
Sbjct: 250 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 309

Query: 175 KMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQ 354
           KM   D +S+ +M+ GYI   R KEAL+LF  ++A  ++PD+FT+VS+LTACA LGAL  
Sbjct: 310 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 369

Query: 355 GKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAI 534
           G+ +  +I+   +K D+++  +L+DMY KCG VD+A  +F  M +RD  TWT +I GLA+
Sbjct: 370 GEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAV 429

Query: 535 N 537
           N
Sbjct: 430 N 430



 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 44/137 (32%), Positives = 82/137 (59%)
 Frame = +1

Query: 115 AIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQP 294
           A++  Y   G +D AR +F+     D+I++N +++ Y    + +E+ +LF  +    + P
Sbjct: 158 ALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLP 217

Query: 295 DKFTVVSLLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVF 474
              T+V +L+AC+ L  L  GK +H++++ C V+ ++ L  +++DMY  CG++D A+ +F
Sbjct: 218 TTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIF 277

Query: 475 GRMVERDAQTWTVIISG 525
             M  RD  +WT I+SG
Sbjct: 278 RSMNNRDIISWTTIVSG 294



 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 40/127 (31%), Positives = 71/127 (55%)
 Frame = +1

Query: 142 GDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLL 321
           GD   AR LF+++  P++  +N+M+ GY      +  + L+ ++   G++PD++T   L 
Sbjct: 66  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125

Query: 322 TACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQ 501
                  AL  G+ LH H+ +  ++ +V++ T+L+ MY  CG++D A  VF    + D  
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185

Query: 502 TWTVIIS 522
           TW +IIS
Sbjct: 186 TWNMIIS 192



 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 37/143 (25%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           NA+ID Y K GD+D A S+F +M+  D  ++ +M+ G       ++AL +FS +    + 
Sbjct: 390 NALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL 449

Query: 292 PDKFTVVSLLTACASLGALSQG-KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAML 468
           PD+ T + +L+AC   G + +G K       +  ++ ++     L+D+  + G++ +A  
Sbjct: 450 PDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYE 509

Query: 469 VFGRM-VERDAQTWTVIISGLAI 534
           V   M ++ ++  W  +++G  +
Sbjct: 510 VIENMPIKANSIVWGALLAGCRV 532


>ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  169 bits (427), Expect = 5e-40
 Identities = 81/175 (46%), Positives = 126/175 (72%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           LA AL++MY K G+++SAR++FDSM NK   +W  ++ GY + G +D+A  LF++M   D
Sbjct: 245 LANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKD 304

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           ++ +N+M+ GY+H  R KEAL LF++++A  + PD+ T+VS L+AC+ LGAL  G  +H 
Sbjct: 305 VVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHH 364

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           +IE+  +  +V LGT+L+DMY KCGK+ +A+ VF  +  R++ TWT IISGLA++
Sbjct: 365 YIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALH 419



 Score =  106 bits (265), Expect = 3e-21
 Identities = 50/140 (35%), Positives = 84/140 (60%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           NA+I      GD+D AR +F+K    D++S+NSM+ GY+      EAL  + +++  G++
Sbjct: 146 NAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIK 205

Query: 292 PDKFTVVSLLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLV 471
           PD+ T++ ++++CA L  L  G+  H +IEE  +K  V L  +L+DMY KCG ++ A  +
Sbjct: 206 PDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKL 265

Query: 472 FGRMVERDAQTWTVIISGLA 531
           F  M  +   +WT ++ G A
Sbjct: 266 FDSMTNKTMVSWTTMVVGYA 285



 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
 Frame = +1

Query: 130 YCKIG---DIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSK-LRAFGLQPD 297
           +C I    D+D   ++      P+  S+N  + G++     +EA+ L+ + L+  G +PD
Sbjct: 47  FCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPD 106

Query: 298 KFTVVSLLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFG 477
            +T   L  ACA L  +  G  +  H+       D+++  +++ +   CG +D A  +F 
Sbjct: 107 NYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFD 166

Query: 478 RMVERDAQTWTVIISG 525
           +   RD  +W  +I+G
Sbjct: 167 KSCVRDLVSWNSMING 182


>gb|EOY23065.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
           cacao]
          Length = 616

 Score =  163 bits (412), Expect = 3e-38
 Identities = 81/175 (46%), Positives = 115/175 (65%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           L   LI+MY K G +  AR++FD M  +   +WNA+I GY K+GD   AR +F+ M   D
Sbjct: 255 LGNTLIDMYGKRGLVNLARELFDRMLERNVVSWNALIKGYMKVGDFIEARKVFDNMKQRD 314

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           +IS+  M+TGY    +   AL LF  + A  + PD+ TV S+L+ACA+LGAL  G  +H 
Sbjct: 315 VISWTCMITGYSQANQFTGALNLFQDMMAAKVVPDEITVASVLSACANLGALDVGLAIHD 374

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           +I +  ++ DVY+G SL+DMY KCG VD+A+ VF  M E+D+ +WT +ISGLA+N
Sbjct: 375 YICKHGIRADVYVGNSLIDMYCKCGVVDKALEVFHDMKEKDSVSWTSVISGLAVN 429



 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 51/138 (36%), Positives = 79/138 (57%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           NA+I  Y   GD+  AR +F+ M   DI+S+NS++ GY    + KE L  F  ++   ++
Sbjct: 156 NALIHMYSCCGDLGFARKVFDTMEERDIVSWNSLICGYSQCKKFKELLGSFRAMQEANVK 215

Query: 292 PDKFTVVSLLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLV 471
            D  T+V ++ AC     ++    +  +IEE  V  DVYLG +L+DMY K G V+ A  +
Sbjct: 216 ADAVTMVKVILACCYTDNMNLADSMFKYIEENCVHIDVYLGNTLIDMYGKRGLVNLAREL 275

Query: 472 FGRMVERDAQTWTVIISG 525
           F RM+ER+  +W  +I G
Sbjct: 276 FDRMLERNVVSWNALIKG 293



 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
 Frame = +1

Query: 157 ARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAF-GLQPDKFTVVSLLTACA 333
           A  +F +   P + +FN M+ G+       EA+++++++    G   D  T + +  ACA
Sbjct: 69  AHHVFYQTKEPTMFNFNHMIRGFSQSNVPNEAIKMYNQMYYLQGFPGDIMTFIFVFKACA 128

Query: 334 SLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTV 513
            +  ++ G+  H H  +      +++  +L+ MY+ CG +  A  VF  M ERD  +W  
Sbjct: 129 RVSDVANGQKFHVHAVKLGFDSYLFVANALIHMYSCCGDLGFARKVFDTMEERDIVSWNS 188

Query: 514 IISG 525
           +I G
Sbjct: 189 LICG 192



 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 33/144 (22%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           N++ID YCK G +D A  +F  M   D +S+ S+++G         AL+ FS++   G++
Sbjct: 389 NSLIDMYCKCGVVDKALEVFHDMKEKDSVSWTSVISGLAVNGFADSALEFFSQMLKEGVR 448

Query: 292 PDKFTVVSLLTACASLGALSQGKILHAHIEECF-VKQDVYLGTSLLDMYTKCGKVDQAML 468
           P     + +L AC   G + +G      +E+   +  ++     ++D+ ++ G +++A  
Sbjct: 449 PTHGCFLGILLACTHAGLVDKGLQYFETMEKVHGLTPEMKHYGCVVDLLSRYGYLERAYQ 508

Query: 469 VFGRM-VERDAQTWTVIISGLAIN 537
               M +  D   W ++++   ++
Sbjct: 509 FIRTMPIHPDVVVWRILLNACKLH 532


>gb|EOY25899.1| Pentatricopeptide repeat superfamily protein [Theobroma cacao]
          Length = 723

 Score =  162 bits (409), Expect = 6e-38
 Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 2/181 (1%)
 Frame = +1

Query: 1   VSSNLAV--ALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFE 174
           V SNL +  AL++MYA  G +  A +IFD M  K   +W  I+ G+   G+ID+AR  F+
Sbjct: 250 VESNLTLENALMDMYAACGEMDVAVRIFDRMKTKDVISWTTIVSGFVNKGEIDLARDYFD 309

Query: 175 KMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQ 354
           +M   D +S+ +M+ GY+     KEAL LF +++A  ++PD+FT+VS+LTACA LGAL  
Sbjct: 310 RMPERDYVSWTAMIDGYLRVNCFKEALVLFREMQALNIRPDEFTMVSILTACAQLGALQI 369

Query: 355 GKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAI 534
           G+ +  +IE   VK DV++G +L+DMY KCG +++A  VF  M  RD  TWT +I GLAI
Sbjct: 370 GEWIKTYIERNKVKNDVFVGNALIDMYFKCGSIEKAQRVFNGMPWRDKFTWTAMIFGLAI 429

Query: 535 N 537
           N
Sbjct: 430 N 430



 Score =  108 bits (270), Expect = 8e-22
 Identities = 52/138 (37%), Positives = 88/138 (63%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           NA+I  Y   G +++AR++F+     D+I++N ++TGY    +  E  +LF ++   G+ 
Sbjct: 157 NALIHMYSLCGQMEMARAVFDVSCKRDVITWNVIITGYNRMKQYDETNKLFDEMERNGMV 216

Query: 292 PDKFTVVSLLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLV 471
           P   T+VSLL+AC+ L  L  GK +H +I++C V+ ++ L  +L+DMY  CG++D A+ +
Sbjct: 217 PTSVTLVSLLSACSKLKDLEVGKRVHKYIQKCKVESNLTLENALMDMYAACGEMDVAVRI 276

Query: 472 FGRMVERDAQTWTVIISG 525
           F RM  +D  +WT I+SG
Sbjct: 277 FDRMKTKDVISWTTIVSG 294



 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
 Frame = +1

Query: 112 NAIIDGYC--KIGDIDIARSLFEKMNAP-DIISFNSMVTGYIHGARLKEALQLFSKLRAF 282
           N +I   C  + GD++ A  +F +++ P  +  +N+M+ GY      K  + ++  +   
Sbjct: 53  NKLISFCCTNESGDMNHALQMFNQISEPKSVFLWNTMIKGYSRVDCPKHGISMYLNMLKQ 112

Query: 283 GLQPDKFTVVSLLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQA 462
            ++PD +T   LL        LS GK LH H  +     +V++  +L+ MY+ CG+++ A
Sbjct: 113 DVKPDDYTFPFLLKGFDRDVGLSCGKKLHGHAVKFGFGSNVFVQNALIHMYSLCGQMEMA 172

Query: 463 MLVFGRMVERDAQTWTVIISG 525
             VF    +RD  TW VII+G
Sbjct: 173 RAVFDVSCKRDVITWNVIITG 193



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           NA+ID Y K G I+ A+ +F  M   D  ++ +M+ G       +EAL +FS++    ++
Sbjct: 390 NALIDMYFKCGSIEKAQRVFNGMPWRDKFTWTAMIFGLAINGHGEEALGMFSEMLRASIK 449

Query: 292 PDKFTVVSLLTACASLGALSQGKILHAHI-EECFVKQDVYLGTSLLDMYTKCGKVDQAML 468
           PD+ T + +L AC   G + +G+   A +  E  V+ +V     ++D+  + G + +A  
Sbjct: 450 PDEVTYIGVLCACTHAGMVDEGRKFFASMTTEHGVQPNVAHYGCMVDLLGRAGHLQEACE 509

Query: 469 VFGRM-VERDAQTWTVIISGLAIN 537
           V   M ++ ++  W  ++ G  ++
Sbjct: 510 VIKNMPMKPNSIVWGALLGGCRLH 533


>ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543300|gb|EEF44832.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 512

 Score =  161 bits (408), Expect = 8e-38
 Identities = 83/181 (45%), Positives = 119/181 (65%), Gaps = 2/181 (1%)
 Frame = +1

Query: 1   VSSNLAV--ALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFE 174
           V SNL V  ALI+MYA  G +  A  IF+SM ++   +W AI+ G+  IG +DIAR  F+
Sbjct: 220 VQSNLIVENALIDMYAACGEMSVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFD 279

Query: 175 KMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQ 354
           +M   D +S+ +M+ GY+     KEAL LF +++   ++PD+FT+VS+LTACA LGAL  
Sbjct: 280 QMPERDYVSWTAMIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALEL 339

Query: 355 GKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAI 534
           G+ +  +I++  VK D Y+G +L+DMY KCG V++A  +F  M   D  TWT +I GLAI
Sbjct: 340 GEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVGLAI 399

Query: 535 N 537
           N
Sbjct: 400 N 400



 Score = 92.0 bits (227), Expect = 8e-17
 Identities = 44/140 (31%), Positives = 82/140 (58%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           NA+I+ Y   G  D+AR +F+     D++++N+M++ Y    +  +   LF ++    + 
Sbjct: 127 NALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVL 186

Query: 292 PDKFTVVSLLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLV 471
           P   T+VS+L+AC+ L  L  G+ +H +I +  V+ ++ +  +L+DMY  CG++  A+ +
Sbjct: 187 PSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMSVALGI 246

Query: 472 FGRMVERDAQTWTVIISGLA 531
           F  M  RD  +WT I++G A
Sbjct: 247 FESMKSRDVISWTAIVTGFA 266



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 36/129 (27%), Positives = 65/129 (50%)
 Frame = +1

Query: 136 KIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVS 315
           + GD++ AR LF+ +  P +  +N+M+ GY      K  + ++  +    + PD +T   
Sbjct: 34  EFGDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPF 93

Query: 316 LLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERD 495
           L+       A   GK LH H+ +  +  +V++  +L++MY+ CG  D A  +F    + D
Sbjct: 94  LIKGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDMARGIFDMSYKTD 153

Query: 496 AQTWTVIIS 522
             TW  +IS
Sbjct: 154 VVTWNAMIS 162



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 30/85 (35%), Positives = 49/85 (57%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           NA+ID Y K G+++ ARS+F  M  PD  ++ +M+ G       +EAL +F ++    + 
Sbjct: 360 NALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVT 419

Query: 292 PDKFTVVSLLTACASLGALSQGKIL 366
           PD+ T V +L AC   G + +G+ L
Sbjct: 420 PDEITYVGVLCACTHTGMVDEGRNL 444


>ref|XP_006304931.1| hypothetical protein CARUB_v10011411mg [Capsella rubella]
           gi|482573642|gb|EOA37829.1| hypothetical protein
           CARUB_v10011411mg [Capsella rubella]
          Length = 570

 Score =  161 bits (407), Expect = 1e-37
 Identities = 78/179 (43%), Positives = 114/179 (63%)
 Frame = +1

Query: 1   VSSNLAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKM 180
           +S  +  AL++M+ K G +  AR +FDSM +K    W +++ GY   G ID AR LFE+ 
Sbjct: 180 MSVKIGNALVDMFCKCGRLDKARAVFDSMRDKNVKCWTSMVSGYVSNGRIDEARELFERS 239

Query: 181 NAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGK 360
              D++ + +M+ GY+   R  EAL+LF  ++  G++PD F +VSLLT CA  GAL QGK
Sbjct: 240 PVKDVVLWTAMMNGYVQFNRFDEALELFRCMQIEGIRPDNFVLVSLLTGCAQTGALEQGK 299

Query: 361 ILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
            +H +I E  V  D  +GT+L+DMY KCG ++ A+ +F  M ERD  +WT +I GLA+N
Sbjct: 300 WIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALEIFYEMKERDTTSWTSLIYGLAMN 358



 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 45/143 (31%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKL-RAFGL 288
           N+++  Y  +G I+I   +F++M   D++S+N +++ Y+   R ++A+ +F ++ +   L
Sbjct: 85  NSLMGMYAALGKIEITHKVFDEMPQRDVVSWNGLISSYVGHGRFEDAIAVFKRMSQESNL 144

Query: 289 QPDKFTVVSLLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAML 468
           + D+ T+VS L+AC+ L  L  G+ +H ++   F +  V +G +L+DM+ KCG++D+A  
Sbjct: 145 KADEGTIVSTLSACSVLKNLEIGERIHKYVVTEF-EMSVKIGNALVDMFCKCGRLDKARA 203

Query: 469 VFGRMVERDAQTWTVIISGLAIN 537
           VF  M +++ + WT ++SG   N
Sbjct: 204 VFDSMRDKNVKCWTSMVSGYVSN 226



 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 34/115 (29%), Positives = 59/115 (51%)
 Frame = +1

Query: 178 MNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQG 357
           +  P ++ +N M+          + L LF +LR  GL PD FT+  +L +   L  + +G
Sbjct: 6   VQTPSLVMYNKMLKSLADSKSFTKVLALFGELRGQGLYPDSFTLPVVLKSIGRLRKVPEG 65

Query: 358 KILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIIS 522
           + +H +  +  ++ D Y+  SL+ MY   GK++    VF  M +RD  +W  +IS
Sbjct: 66  EKVHGYAVKAGLEFDSYVSNSLMGMYAALGKIEITHKVFDEMPQRDVVSWNGLIS 120


>ref|XP_004240796.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Solanum lycopersicum]
          Length = 597

 Score =  161 bits (407), Expect = 1e-37
 Identities = 77/175 (44%), Positives = 114/175 (65%)
 Frame = +1

Query: 13  LAVALINMYAKGGSIKSARQIFDSMNNKIAPAWNAIIDGYCKIGDIDIARSLFEKMNAPD 192
           L   LI+MY + G +  A ++F  M  K   +WNA+I GY K GD+  AR LF+KM   D
Sbjct: 251 LGNTLIDMYGRRGLVILADEVFTKMKEKNVVSWNAMIMGYAKAGDLMAARKLFDKMPNRD 310

Query: 193 IISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGALSQGKILHA 372
           +IS+ SM+TGY    R  +A+ LF ++ A  ++PD+ TV S+L+ACA LG    GK +H 
Sbjct: 311 VISWTSMITGYCQANRFSDAIALFQEMMAIKVKPDEVTVASVLSACAHLGIFDVGKAVHE 370

Query: 373 HIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISGLAIN 537
           ++ +  +K D+Y+G +L+DMY KCG V+ A+ VF  M ++D  +WT +ISGLA+N
Sbjct: 371 YVHQHDIKMDIYVGNALVDMYCKCGSVNTALEVFLSMSKKDTVSWTSMISGLAVN 425



 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 49/140 (35%), Positives = 82/140 (58%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           NA+I  Y   GD+  A  +F++M+  D++S+NS++ GY    +  E L LF+ ++A  ++
Sbjct: 152 NALIYTYGSCGDLVGAGKVFDRMSERDLVSWNSLICGYSQCYKYHEVLGLFASMQAENVK 211

Query: 292 PDKFTVVSLLTACASLGALSQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLV 471
            D  T+V ++ AC+ LG       +  +I +  V+ DVYLG +L+DMY + G V  A  V
Sbjct: 212 ADAVTLVKVVLACSYLGDFDTADFVAKYIRDSCVRIDVYLGNTLIDMYGRRGLVILADEV 271

Query: 472 FGRMVERDAQTWTVIISGLA 531
           F +M E++  +W  +I G A
Sbjct: 272 FTKMKEKNVVSWNAMIMGYA 291



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
 Frame = +1

Query: 112 NAIIDGYCKIGDIDIARSLFEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQ 291
           NA++D YCK G ++ A  +F  M+  D +S+ SM++G         A+QLFS++   G +
Sbjct: 385 NALVDMYCKCGSVNTALEVFLSMSKKDTVSWTSMISGLAVNGFHDNAIQLFSQMLGEGCK 444

Query: 292 PDKFTVVSLLTACASLGALSQGKILHAHIEE--CFVKQDVYLGTSLLDMYTKCGKVDQAM 465
           P   T V +L ACA  G + +G      +++    V +  + G  ++D+  + G +++A 
Sbjct: 445 PTHGTFVGVLLACAHAGLVDKGLEYFESMKKRHGLVPEMKHYG-CVVDLLCRSGNLNRAF 503

Query: 466 LVFGRM-VERDAQTWTVIISGLAIN 537
                M +  D   W +++S   ++
Sbjct: 504 EFLNLMPMVADVVLWRMLLSACKLH 528



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 33/119 (27%), Positives = 58/119 (48%)
 Frame = +1

Query: 169 FEKMNAPDIISFNSMVTGYIHGARLKEALQLFSKLRAFGLQPDKFTVVSLLTACASLGAL 348
           F +   P +  +N M+ G     R  EAL ++ ++R  G   +  T + +  AC  L  +
Sbjct: 70  FNQTERPTLPIWNYMIRGLSKSDRPIEALHMYVRMRQQGFPGNNLTFIFIFKACVQLSDI 129

Query: 349 SQGKILHAHIEECFVKQDVYLGTSLLDMYTKCGKVDQAMLVFGRMVERDAQTWTVIISG 525
             G+ +H ++ +   +  +Y+  +L+  Y  CG +  A  VF RM ERD  +W  +I G
Sbjct: 130 VLGQAVHVNVLKLGYQSYLYVCNALIYTYGSCGDLVGAGKVFDRMSERDLVSWNSLICG 188