BLASTX nr result
ID: Zingiber24_contig00047056
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00047056
(425 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 51 3e-12
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 59 3e-12
gb|EXB77770.1| hypothetical protein L484_000113 [Morus notabilis] 51 3e-11
gb|EXC18499.1| Retrovirus-related Pol polyprotein from transposo... 51 5e-11
gb|EXC27156.1| hypothetical protein L484_000603 [Morus notabilis] 50 1e-10
gb|EXC14994.1| hypothetical protein L484_008148 [Morus notabilis] 48 9e-10
emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera] 43 1e-09
gb|ABI34376.1| Polyprotein, putative [Solanum demissum] 41 3e-09
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 48 3e-08
gb|EXB94191.1| Serine/threonine-protein kinase ATM [Morus notabi... 40 1e-06
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 41 2e-06
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 42 3e-06
emb|CAN72242.1| hypothetical protein VITISV_022621 [Vitis vinifera] 35 7e-06
gb|EXB36808.1| hypothetical protein L484_007870 [Morus notabilis] 51 8e-06
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 51.2 bits (121), Expect(3) = 3e-12
Identities = 32/70 (45%), Positives = 39/70 (55%)
Frame = +3
Query: 3 NTQFLEEDYIMDHKPSSKVVLEELREDMSTSVPTVQDEVPQETATRVTHDTQPQTVPRRS 182
N FLE +Y+ D KP SKVVLEEL D + PT E ++ T D P PRRS
Sbjct: 61 NATFLEYNYMADFKPISKVVLEELLADEISPTPTTVVERQRKETT--AQDLTPPP-PRRS 117
Query: 183 GRVVRQPERF 212
GR +R P R+
Sbjct: 118 GREIRLPIRY 127
Score = 42.4 bits (98), Expect(3) = 3e-12
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
E+E MYSN +WKLV+ P G+K G K +Y K
Sbjct: 167 EIESMYSNSVWKLVDLPEGIKPIGCKWIYKXK 198
Score = 22.7 bits (47), Expect(3) = 3e-12
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +1
Query: 220 GESLD*IPGEHEPDSQTYDEALQDKDAASWQRVMNKRI 333
GE+ + + D T+ A+ D D WQ M I
Sbjct: 131 GEAQVAVTDGSDDDPLTFKMAMDDVDREKWQEAMKLEI 168
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 58.5 bits (140), Expect(2) = 3e-12
Identities = 28/71 (39%), Positives = 44/71 (61%)
Frame = +3
Query: 3 NTQFLEEDYIMDHKPSSKVVLEELREDMSTSVPTVQDEVPQETATRVTHDTQPQTVPRRS 182
N FLEED+ +H+P SK+VL+E+ ++ + + V + + +H +Q VPRRS
Sbjct: 718 NATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSSSTKVVDKANISDQSHTSQELRVPRRS 777
Query: 183 GRVVRQPERFM 215
GRVV QP R++
Sbjct: 778 GRVVHQPNRYL 788
Score = 38.1 bits (87), Expect(2) = 3e-12
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
E+E MY N +W LV+ P+ VK G K +Y RK
Sbjct: 827 EMESMYFNSVWTLVDLPSDVKPIGCKWIYKRK 858
>gb|EXB77770.1| hypothetical protein L484_000113 [Morus notabilis]
Length = 294
Score = 51.2 bits (121), Expect(2) = 3e-11
Identities = 30/71 (42%), Positives = 39/71 (54%)
Frame = +3
Query: 3 NTQFLEEDYIMDHKPSSKVVLEELREDMSTSVPTVQDEVPQETATRVTHDTQPQTVPRRS 182
N FLEED++ + KP S++VLEEL E PQ+ T + PR S
Sbjct: 100 NAHFLEEDFVKNMKPRSRLVLEELTE-------------PQQELTPIE--------PRHS 138
Query: 183 GRVVRQPERFM 215
GRVVRQP+R+M
Sbjct: 139 GRVVRQPDRYM 149
Score = 42.4 bits (98), Expect(2) = 3e-11
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
E++ MY N IW LV+PP GVK G K +Y +K
Sbjct: 188 EIQSMYKNGIWTLVDPPEGVKPIGCKWIYRKK 219
>gb|EXC18499.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 414
Score = 50.8 bits (120), Expect(3) = 5e-11
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 NTQFLEEDYIMDHKPSSKVVLEELREDMSTSVPT-VQDEVPQETATRVTHDTQPQTVPRR 179
N FLE DY++D KP SK+VLEEL D PT V + Q+T Q PRR
Sbjct: 200 NATFLEHDYMIDFKPRSKIVLEELLSDEIRPQPTRVVGPLRQKTIV----PDQTLMAPRR 255
Query: 180 SGRVVRQPERF 212
S RV R P+R+
Sbjct: 256 SRRVSRLPDRY 266
Score = 38.5 bits (88), Expect(3) = 5e-11
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
E+E M+SN +W+LV+ P GVK K +Y RK
Sbjct: 304 EIESMHSNSVWQLVDLPEGVKPIRCKWIYKRK 335
Score = 22.7 bits (47), Expect(3) = 5e-11
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +1
Query: 208 DSCFGESLD*IPGEHEPDSQTYDEALQDKDAASWQRVMNKRI 333
D GE+ + + D T+ +A+ D + WQ M I
Sbjct: 264 DRYTGEAQIVTADDGKEDPSTFRDAMDDSNKEEWQAAMKLEI 305
>gb|EXC27156.1| hypothetical protein L484_000603 [Morus notabilis]
Length = 246
Score = 49.7 bits (117), Expect(3) = 1e-10
Identities = 30/70 (42%), Positives = 36/70 (51%)
Frame = +3
Query: 3 NTQFLEEDYIMDHKPSSKVVLEELREDMSTSVPTVQDEVPQETATRVTHDTQPQTVPRRS 182
N FLE DY++D P SK+VLEEL D PT V + T Q PRRS
Sbjct: 104 NATFLEHDYMIDFNPRSKIVLEELLSDEIGPQPT---RVVGPLREKTTVPDQIPKAPRRS 160
Query: 183 GRVVRQPERF 212
GRV P+R+
Sbjct: 161 GRVSILPDRY 170
Score = 38.1 bits (87), Expect(3) = 1e-10
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
E+E MYSN +W+LV+ GVK G K ++ RK
Sbjct: 208 EMESMYSNSVWQLVDLLEGVKPIGCKWIFKRK 239
Score = 23.1 bits (48), Expect(3) = 1e-10
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +1
Query: 259 DSQTYDEALQDKDAASWQRVM 321
D T+ +A+ D D WQ M
Sbjct: 185 DPSTFKDAMDDSDKEEWQVTM 205
>gb|EXC14994.1| hypothetical protein L484_008148 [Morus notabilis]
Length = 242
Score = 48.1 bits (113), Expect(2) = 9e-10
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +3
Query: 3 NTQFLEEDYIMDHKPSSKVVLEEL-----REDMSTSVPTVQDEVPQETATRVTHDTQPQT 167
N FLE D++ + KP S++VL EL R S S+P + PQ+ T +
Sbjct: 51 NAHFLEGDFVKNVKPKSRLVLGELTGENVRVASSRSIPEPITDEPQKELTPME------- 103
Query: 168 VPRRSGRVVRQPERFM 215
PRRSGRVVRQ +R+M
Sbjct: 104 -PRRSGRVVRQLDRYM 118
Score = 40.4 bits (93), Expect(2) = 9e-10
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
E++ MY N +W LV+PP GVK G K ++ +K
Sbjct: 157 EIQSMYKNGVWTLVDPPEGVKPVGCKLIFKKK 188
>emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera]
Length = 961
Score = 43.1 bits (100), Expect(3) = 1e-09
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
E+E MYSN +W+LV+ P G+K G K +Y RK
Sbjct: 603 EIESMYSNSVWELVDLPEGIKPIGCKWIYKRK 634
Score = 38.9 bits (89), Expect(3) = 1e-09
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 36 DHKPSSKVVLEELREDMSTSVP-TVQDEVPQETATRVTHDTQPQTVPRRSGRVVRQPERF 212
D KP SKVVLEEL D + P TV + +ET R D P PR SGR +R P R+
Sbjct: 508 DFKPRSKVVLEELLADEISPTPTTVVERQRKETTAR---DLTPPP-PRCSGREIRLPIRY 563
Score = 25.0 bits (53), Expect(3) = 1e-09
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 220 GESLD*IPGEHEPDSQTYDEALQDKDAASWQRVMNKRI 333
GE+ + + DS T+ A+ D D +WQ M I
Sbjct: 567 GEAQVAVTDGSDDDSLTFKMAMDDVDRETWQEAMKLEI 604
>gb|ABI34376.1| Polyprotein, putative [Solanum demissum]
Length = 380
Score = 40.8 bits (94), Expect(3) = 3e-09
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEP-PNGVKAFGYKKVYNRK 424
E+E MYSNK+W LVEP +GVK G K +Y +K
Sbjct: 303 EMESMYSNKVWDLVEPHVDGVKPIGCKWIYKKK 335
Score = 37.0 bits (84), Expect(3) = 3e-09
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +1
Query: 220 GESLD*IPGEHEPDSQTYDEALQDKDAASW 309
GES D IP E + YDEALQD+DA W
Sbjct: 267 GESFDRIPEESNIEPVNYDEALQDEDAEKW 296
Score = 28.1 bits (61), Expect(3) = 3e-09
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Frame = +3
Query: 48 SSKVVLEE----------LREDMSTSVPTVQDEVPQE-TATRVTHDTQPQTVPRRSGRVV 194
+ ++VLEE ++M T PT PQ+ ++ T V RRSG V+
Sbjct: 198 NEQIVLEEEIADISAPQGAEDNMDTQDPTNDVVPPQDHNNANISEPTPATVVSRRSGIVL 257
Query: 195 RQPERF 212
R+P R+
Sbjct: 258 RKPLRY 263
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 47.8 bits (112), Expect(2) = 3e-08
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
E+E MYSN++W+LVEPP GVK G K +Y +K
Sbjct: 132 EMESMYSNQVWELVEPPKGVKPIGCKWIYKKK 163
Score = 35.8 bits (81), Expect(2) = 3e-08
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 220 GESLD*IPGEHEPDSQTYDEALQDKDAASWQRVMNKRI 333
GE+ D IP E + YD+ALQDKDA W M +
Sbjct: 96 GEAFDRIPEEVNTEPVCYDDALQDKDADKWLVAMKSEM 133
>gb|EXB94191.1| Serine/threonine-protein kinase ATM [Morus notabilis]
Length = 1438
Score = 40.4 bits (93), Expect(2) = 1e-06
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
E+E MYSN +W+LV+ P GVK G K + RK
Sbjct: 1400 EIESMYSNSVWQLVDLPKGVKPIGCKWIIKRK 1431
Score = 37.4 bits (85), Expect(2) = 1e-06
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +3
Query: 3 NTQFLEEDYIMDHKPSSKVVLEELREDMSTSVPTVQDEVPQETATRVTHDTQPQTVPRRS 182
N F+ DY++ KP SK VLE+L + PT V + + T Q RS
Sbjct: 1296 NATFMGHDYMIVFKPRSKAVLEKLLFNKIGPQPT---RVVRTLRDKTTIPNQTPLARHRS 1352
Query: 183 GRVVRQPERF 212
GRV + P R+
Sbjct: 1353 GRVSKLPNRY 1362
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 41.2 bits (95), Expect(2) = 2e-06
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFG 400
E+E MYSN++W+LVEPP GVK G
Sbjct: 1169 EMESMYSNQVWELVEPPKGVKPIG 1192
Score = 35.8 bits (81), Expect(2) = 2e-06
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 220 GESLD*IPGEHEPDSQTYDEALQDKDAASWQRVMNKRI 333
GE+ D IP E + YD+ALQDKDA W M +
Sbjct: 1133 GEAFDRIPEEVNTEPVCYDDALQDKDADKWLVAMKSEM 1170
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 42.0 bits (97), Expect(2) = 3e-06
Identities = 28/73 (38%), Positives = 37/73 (50%)
Frame = +3
Query: 3 NTQFLEEDYIMDHKPSSKVVLEELREDMSTSVPTVQDEVPQETATRVTHDTQPQTVPRRS 182
N FLE +++ SKV+LEE+RE VPT Q+E Q RV + RRS
Sbjct: 357 NGAFLEREFLSKGTSGSKVLLEEVREPQG-DVPTSQEE-HQLDLRRVVEPILVEPEVRRS 414
Query: 183 GRVVRQPERFMFW 221
R +P+RF W
Sbjct: 415 ERSRHEPDRFRDW 427
Score = 34.3 bits (77), Expect(2) = 3e-06
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
E+E M NK+W LV+ P+GVK K ++ +K
Sbjct: 464 EMESMSQNKVWTLVDLPDGVKPIECKWIFKKK 495
>emb|CAN72242.1| hypothetical protein VITISV_022621 [Vitis vinifera]
Length = 189
Score = 35.0 bits (79), Expect(3) = 7e-06
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 220 GESLD*IPGEHEPDSQTYDEALQDKDAASWQRVMNKRIRIYVF 348
GE + IP EHE D + YDEA+ DA QR + + F
Sbjct: 102 GEFFEAIPEEHEIDXRDYDEAMSSDDAILXQRAIEAELESMCF 144
Score = 33.5 bits (75), Expect(3) = 7e-06
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 329 ELEYMYSNKIWKLVEPPNGVKAFGYKKVYNRK 424
ELE M ++W LVE G+K G K VY RK
Sbjct: 138 ELESMCFXEVWDLVETLEGIKPIGCKWVYKRK 169
Score = 25.8 bits (55), Expect(3) = 7e-06
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 108 QDEVPQETATRVTHDTQPQTVPRRSGRVVRQPERFMF 218
Q+ + E +T T VP S RVV QP RFM+
Sbjct: 64 QETMGLEVSTPTILVTSCTLVPHYSRRVVIQPYRFMY 100
>gb|EXB36808.1| hypothetical protein L484_007870 [Morus notabilis]
Length = 145
Score = 50.8 bits (120), Expect(2) = 8e-06
Identities = 30/70 (42%), Positives = 36/70 (51%)
Frame = +3
Query: 3 NTQFLEEDYIMDHKPSSKVVLEELREDMSTSVPTVQDEVPQETATRVTHDTQPQTVPRRS 182
N FLE DY++D KP SK+VLEEL D PT V + T Q P RS
Sbjct: 32 NATFLEHDYMIDFKPRSKIVLEELLSDEIGPHPT---RVVGPLREKTTVPDQTPKAPHRS 88
Query: 183 GRVVRQPERF 212
GRV P+R+
Sbjct: 89 GRVSMLPDRY 98
Score = 24.3 bits (51), Expect(2) = 8e-06
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 208 DSCFGESLD*IPGEHEPDSQTYDEALQDKDAASWQRVM 321
D GE+ + + D T+ +A+ D D WQ M
Sbjct: 96 DRYTGEAQIVTTDDGKEDPSTFKDAMDDSDKEEWQAAM 133