BLASTX nr result
ID: Zingiber24_contig00046154
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00046154
(352 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002308344.2| hypothetical protein POPTR_0006s21160g [Popu... 135 6e-30
gb|EOY09620.1| Cleavage and polyadenylation specificity factor (... 135 7e-30
gb|EOY09618.1| Cleavage and polyadenylation specificity factor (... 135 7e-30
gb|EOY09621.1| Cleavage and polyadenylation specificity factor (... 134 1e-29
gb|EOY09619.1| Cleavage and polyadenylation specificity factor (... 134 1e-29
ref|XP_006429954.1| hypothetical protein CICLE_v10011020mg [Citr... 132 4e-29
ref|XP_006481687.1| PREDICTED: uncharacterized protein LOC102624... 128 7e-28
ref|XP_006481685.1| PREDICTED: uncharacterized protein LOC102624... 128 7e-28
emb|CBI29964.3| unnamed protein product [Vitis vinifera] 127 1e-27
ref|XP_002276675.1| PREDICTED: pre-mRNA-splicing factor rse1-lik... 127 1e-27
emb|CAN78747.1| hypothetical protein VITISV_022228 [Vitis vinifera] 127 1e-27
gb|EMJ05498.1| hypothetical protein PRUPE_ppa000262mg [Prunus pe... 126 3e-27
ref|XP_004170344.1| PREDICTED: uncharacterized protein LOC101227... 126 3e-27
ref|XP_004136549.1| PREDICTED: pre-mRNA-splicing factor RSE1-lik... 126 3e-27
ref|XP_004303372.1| PREDICTED: pre-mRNA-splicing factor rse-1-li... 125 6e-27
ref|XP_002461656.1| hypothetical protein SORBIDRAFT_02g006020 [S... 124 1e-26
tpg|DAA59944.1| TPA: hypothetical protein ZEAMMB73_987949 [Zea m... 124 2e-26
ref|XP_004955777.1| PREDICTED: splicing factor 3B subunit 3-like... 120 1e-25
ref|XP_004955775.1| PREDICTED: splicing factor 3B subunit 3-like... 120 1e-25
ref|XP_004955774.1| PREDICTED: splicing factor 3B subunit 3-like... 120 1e-25
>ref|XP_002308344.2| hypothetical protein POPTR_0006s21160g [Populus trichocarpa]
gi|550336774|gb|EEE91867.2| hypothetical protein
POPTR_0006s21160g [Populus trichocarpa]
Length = 1397
Score = 135 bits (340), Expect = 6e-30
Identities = 64/109 (58%), Positives = 83/109 (76%)
Frame = -2
Query: 351 DRHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLA 172
D+ + QGKD L+V+SDSGKL+ LTFC+EMHRFF +THI+LS PGN+RHQLGRMLA
Sbjct: 101 DKFHAQTPRVQGKDHLVVISDSGKLTFLTFCNEMHRFFPLTHIQLSNPGNSRHQLGRMLA 160
Query: 171 VDPGGCFVAVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGR 25
VD GCFVA SAYEDQ A+ +L+ S ++ E+I YPPE++ +A+ R
Sbjct: 161 VDSSGCFVATSAYEDQLALFSLSASGGSEIIDERILYPPENEGNANVAR 209
>gb|EOY09620.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
protein isoform 3 [Theobroma cacao]
Length = 1254
Score = 135 bits (339), Expect = 7e-30
Identities = 61/109 (55%), Positives = 87/109 (79%)
Frame = -2
Query: 327 QGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAVDPGGCFV 148
Q +GKD+L+V+SDSGKLS LTFC EMHRFF + H++LS PGN+RHQLGRMLAVD GCF+
Sbjct: 108 QMRGKDLLIVISDSGKLSFLTFCIEMHRFFPVAHVQLSDPGNSRHQLGRMLAVDSTGCFI 167
Query: 147 AVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGRDSLGSIVR 1
A SAYED+ A+ +L++S+ +++ E+I+YPPE++ S+ R + + +R
Sbjct: 168 ATSAYEDRLALFSLSMSAGDDIIDERIFYPPENEGSVSSTRSAQRTSIR 216
>gb|EOY09618.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
protein isoform 1 [Theobroma cacao]
Length = 1391
Score = 135 bits (339), Expect = 7e-30
Identities = 61/109 (55%), Positives = 87/109 (79%)
Frame = -2
Query: 327 QGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAVDPGGCFV 148
Q +GKD+L+V+SDSGKLS LTFC EMHRFF + H++LS PGN+RHQLGRMLAVD GCF+
Sbjct: 108 QMRGKDLLIVISDSGKLSFLTFCIEMHRFFPVAHVQLSDPGNSRHQLGRMLAVDSTGCFI 167
Query: 147 AVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGRDSLGSIVR 1
A SAYED+ A+ +L++S+ +++ E+I+YPPE++ S+ R + + +R
Sbjct: 168 ATSAYEDRLALFSLSMSAGDDIIDERIFYPPENEGSVSSTRSAQRTSIR 216
>gb|EOY09621.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
protein isoform 4 [Theobroma cacao]
Length = 1127
Score = 134 bits (337), Expect = 1e-29
Identities = 60/107 (56%), Positives = 86/107 (80%)
Frame = -2
Query: 321 QGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAVDPGGCFVAV 142
+GKD+L+V+SDSGKLS LTFC EMHRFF + H++LS PGN+RHQLGRMLAVD GCF+A
Sbjct: 2 RGKDLLIVISDSGKLSFLTFCIEMHRFFPVAHVQLSDPGNSRHQLGRMLAVDSTGCFIAT 61
Query: 141 SAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGRDSLGSIVR 1
SAYED+ A+ +L++S+ +++ E+I+YPPE++ S+ R + + +R
Sbjct: 62 SAYEDRLALFSLSMSAGDDIIDERIFYPPENEGSVSSTRSAQRTSIR 108
>gb|EOY09619.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
protein isoform 2, partial [Theobroma cacao]
Length = 1237
Score = 134 bits (337), Expect = 1e-29
Identities = 60/107 (56%), Positives = 86/107 (80%)
Frame = -2
Query: 321 QGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAVDPGGCFVAV 142
+GKD+L+V+SDSGKLS LTFC EMHRFF + H++LS PGN+RHQLGRMLAVD GCF+A
Sbjct: 22 RGKDLLIVISDSGKLSFLTFCIEMHRFFPVAHVQLSDPGNSRHQLGRMLAVDSTGCFIAT 81
Query: 141 SAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGRDSLGSIVR 1
SAYED+ A+ +L++S+ +++ E+I+YPPE++ S+ R + + +R
Sbjct: 82 SAYEDRLALFSLSMSAGDDIIDERIFYPPENEGSVSSTRSAQRTSIR 128
>ref|XP_006429954.1| hypothetical protein CICLE_v10011020mg [Citrus clementina]
gi|557532011|gb|ESR43194.1| hypothetical protein
CICLE_v10011020mg [Citrus clementina]
Length = 926
Score = 132 bits (333), Expect = 4e-29
Identities = 61/109 (55%), Positives = 81/109 (74%)
Frame = -2
Query: 351 DRHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLA 172
D+ Q GKD+L+V+SDSGKLS L FC+EMHRFF + + LS PGN+RHQLGRMLA
Sbjct: 100 DKFNAQNSQVMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLA 159
Query: 171 VDPGGCFVAVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGR 25
VD GCF+AVSAYED+ + +L++SS +++ +KI YP ES++D S R
Sbjct: 160 VDSSGCFIAVSAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDTSASR 208
>ref|XP_006481687.1| PREDICTED: uncharacterized protein LOC102624787 isoform X3 [Citrus
sinensis]
Length = 1182
Score = 128 bits (322), Expect = 7e-28
Identities = 59/101 (58%), Positives = 78/101 (77%)
Frame = -2
Query: 327 QGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAVDPGGCFV 148
Q GKD+L+V+SDSGKLS L FC+EMHRFF + + LS PGN+RHQLGRMLAVD GC +
Sbjct: 108 QLMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLI 167
Query: 147 AVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGR 25
AVSAYED+ + +L++SS +++ +KI YP ES++D S R
Sbjct: 168 AVSAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDTSASR 208
>ref|XP_006481685.1| PREDICTED: uncharacterized protein LOC102624787 isoform X1 [Citrus
sinensis]
Length = 1394
Score = 128 bits (322), Expect = 7e-28
Identities = 59/101 (58%), Positives = 78/101 (77%)
Frame = -2
Query: 327 QGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAVDPGGCFV 148
Q GKD+L+V+SDSGKLS L FC+EMHRFF + + LS PGN+RHQLGRMLAVD GC +
Sbjct: 108 QLMGKDLLVVISDSGKLSFLAFCNEMHRFFPVAQVHLSNPGNSRHQLGRMLAVDSSGCLI 167
Query: 147 AVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGR 25
AVSAYED+ + +L++SS +++ +KI YP ES++D S R
Sbjct: 168 AVSAYEDRLGLFSLSMSSGSDIIDKKICYPSESEVDTSASR 208
>emb|CBI29964.3| unnamed protein product [Vitis vinifera]
Length = 1363
Score = 127 bits (320), Expect = 1e-27
Identities = 55/109 (50%), Positives = 85/109 (77%)
Frame = -2
Query: 351 DRHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLA 172
+R Q QG+D+L+V+SDSGKLS L FC+EMHRFF +TH++LS PGN R+QLG+MLA
Sbjct: 91 ERFHHQNLQMQGRDLLVVVSDSGKLSFLRFCNEMHRFFPVTHVQLSSPGNLRNQLGQMLA 150
Query: 171 VDPGGCFVAVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGR 25
+D GCF+A SAYED+ A+ +++++++ +++ ++I+YPPE + D+ R
Sbjct: 151 IDSNGCFIATSAYEDRLAMFSISMATDSDIIDKRIFYPPEIEGDSGVAR 199
>ref|XP_002276675.1| PREDICTED: pre-mRNA-splicing factor rse1-like [Vitis vinifera]
Length = 1387
Score = 127 bits (320), Expect = 1e-27
Identities = 55/109 (50%), Positives = 85/109 (77%)
Frame = -2
Query: 351 DRHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLA 172
+R Q QG+D+L+V+SDSGKLS L FC+EMHRFF +TH++LS PGN R+QLG+MLA
Sbjct: 91 ERFHHQNLQMQGRDLLVVVSDSGKLSFLRFCNEMHRFFPVTHVQLSSPGNLRNQLGQMLA 150
Query: 171 VDPGGCFVAVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGR 25
+D GCF+A SAYED+ A+ +++++++ +++ ++I+YPPE + D+ R
Sbjct: 151 IDSNGCFIATSAYEDRLAMFSISMATDSDIIDKRIFYPPEIEGDSGVAR 199
>emb|CAN78747.1| hypothetical protein VITISV_022228 [Vitis vinifera]
Length = 1298
Score = 127 bits (320), Expect = 1e-27
Identities = 55/109 (50%), Positives = 85/109 (77%)
Frame = -2
Query: 351 DRHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLA 172
+R Q QG+D+L+V+SDSGKLS L FC+EMHRFF +TH++LS PGN R+QLG+MLA
Sbjct: 132 ERFHHQNLQMQGRDLLVVVSDSGKLSFLRFCNEMHRFFPVTHVQLSSPGNLRNQLGQMLA 191
Query: 171 VDPGGCFVAVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGR 25
+D GCF+A SAYED+ A+ +++++++ +++ ++I+YPPE + D+ R
Sbjct: 192 IDSNGCFIATSAYEDRLAMFSISMATDSDIIDKRIFYPPEIEGDSGVAR 240
>gb|EMJ05498.1| hypothetical protein PRUPE_ppa000262mg [Prunus persica]
Length = 1378
Score = 126 bits (317), Expect = 3e-27
Identities = 59/115 (51%), Positives = 84/115 (73%)
Frame = -2
Query: 351 DRHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLA 172
D+ R Q GKD+L+V+SDSG LS L+FC+EMHRFF +T ++LS PGN+R+QLGRMLA
Sbjct: 94 DKFRTQNPQMLGKDLLVVISDSGNLSFLSFCNEMHRFFPVTQVQLSNPGNSRNQLGRMLA 153
Query: 171 VDPGGCFVAVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGRDSLGSI 7
+D GCF+A SAYE+Q A+ ++++S +++ +KI +P E + DAS R SI
Sbjct: 154 IDSSGCFIAASAYENQLAMFSVSVSGGSDIIDKKIVFPQEKEADASAARVQKNSI 208
>ref|XP_004170344.1| PREDICTED: uncharacterized protein LOC101227016, partial [Cucumis
sativus]
Length = 997
Score = 126 bits (317), Expect = 3e-27
Identities = 59/105 (56%), Positives = 83/105 (79%)
Frame = -2
Query: 351 DRHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLA 172
+R R S Q GKD+L+V+SDSGKLS LTFC++MHRF MTHI+LS PGN+R+Q+GRMLA
Sbjct: 93 ERFRPSYTQMLGKDLLIVISDSGKLSFLTFCNKMHRFLPMTHIQLSNPGNSRNQIGRMLA 152
Query: 171 VDPGGCFVAVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDA 37
D GCF+A SAYE++ A+ + +IS+ ++V ++I YPP+S+ D+
Sbjct: 153 SDSSGCFIAASAYENRLALFSTSISAGSDIVDKRITYPPDSEGDS 197
>ref|XP_004136549.1| PREDICTED: pre-mRNA-splicing factor RSE1-like [Cucumis sativus]
Length = 1376
Score = 126 bits (317), Expect = 3e-27
Identities = 59/105 (56%), Positives = 83/105 (79%)
Frame = -2
Query: 351 DRHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLA 172
+R R S Q GKD+L+V+SDSGKLS LTFC++MHRF MTHI+LS PGN+R+Q+GRMLA
Sbjct: 93 ERFRPSYTQMLGKDLLIVISDSGKLSFLTFCNKMHRFLPMTHIQLSNPGNSRNQIGRMLA 152
Query: 171 VDPGGCFVAVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDA 37
D GCF+A SAYE++ A+ + +IS+ ++V ++I YPP+S+ D+
Sbjct: 153 SDSSGCFIAASAYENRLALFSTSISAGSDIVDKRITYPPDSEGDS 197
>ref|XP_004303372.1| PREDICTED: pre-mRNA-splicing factor rse-1-like [Fragaria vesca
subsp. vesca]
Length = 1396
Score = 125 bits (314), Expect = 6e-27
Identities = 59/115 (51%), Positives = 84/115 (73%)
Frame = -2
Query: 351 DRHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLA 172
DR RG Q GKD+L+V+SDSGKLS+L+FC+EMH+FF +T ++LS PGN+R QL RMLA
Sbjct: 96 DRFRGRNPQMLGKDLLVVVSDSGKLSVLSFCNEMHKFFPVTQVQLSSPGNSRGQLARMLA 155
Query: 171 VDPGGCFVAVSAYEDQFAVINLAISSERNVVYEKIYYPPESKIDASNGRDSLGSI 7
+D GCF+A SAY D+ A+ ++++S +++ +KI YPPE+ D + R SI
Sbjct: 156 IDSSGCFIAASAYVDRLAMFSVSMSGGSDIIDKKIVYPPENDDDVNAARVQKNSI 210
>ref|XP_002461656.1| hypothetical protein SORBIDRAFT_02g006020 [Sorghum bicolor]
gi|241925033|gb|EER98177.1| hypothetical protein
SORBIDRAFT_02g006020 [Sorghum bicolor]
Length = 315
Score = 124 bits (312), Expect = 1e-26
Identities = 69/118 (58%), Positives = 90/118 (76%), Gaps = 7/118 (5%)
Frame = -2
Query: 348 RHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAV 169
RH G Q + KD+L+VLSDSGKLSLL FCSEMHRFFA+ +IELSKPGN RH LGR+LA+
Sbjct: 112 RHVGLIPQIEHKDLLVVLSDSGKLSLLYFCSEMHRFFAIANIELSKPGNLRHHLGRILAI 171
Query: 168 DPGGCFVAVSAYEDQFAVINLAIS---SERNVVYEKIY-YPPESKIDA---SNGRDSL 16
D FVAVS+YED+FA+I++++S S R ++ EK Y YPPE++ D+ S+ R S+
Sbjct: 172 DRESNFVAVSSYEDKFALIHVSVSQSGSGRGIISEKKYFYPPENEEDSRIISSSRTSI 229
>tpg|DAA59944.1| TPA: hypothetical protein ZEAMMB73_987949 [Zea mays]
Length = 1355
Score = 124 bits (310), Expect = 2e-26
Identities = 66/108 (61%), Positives = 84/108 (77%), Gaps = 4/108 (3%)
Frame = -2
Query: 348 RHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAV 169
RH G Q + KD+L+VLSDSGKLSLL FCSEMHRFFA+ +IELSKPGN RH LGR+LA+
Sbjct: 107 RHNGLIPQIECKDLLVVLSDSGKLSLLYFCSEMHRFFAIANIELSKPGNLRHHLGRILAI 166
Query: 168 DPGGCFVAVSAYEDQFAVINLAIS---SERNVVYEKIY-YPPESKIDA 37
D FVAVS+YED+FA+I++++S S ++ EK Y YPPE++ DA
Sbjct: 167 DRESNFVAVSSYEDKFALIHVSVSQSGSGSGIISEKKYFYPPENEDDA 214
>ref|XP_004955777.1| PREDICTED: splicing factor 3B subunit 3-like isoform X4 [Setaria
italica]
Length = 1203
Score = 120 bits (302), Expect = 1e-25
Identities = 63/109 (57%), Positives = 80/109 (73%), Gaps = 6/109 (5%)
Frame = -2
Query: 348 RHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAV 169
RH G Q + KD+L+VLSDSGKLSLL FC EMHRFFA+ +IELSKPGN RHQLGR+LA+
Sbjct: 107 RHIGLIPQIEHKDLLVVLSDSGKLSLLYFCPEMHRFFAIANIELSKPGNLRHQLGRVLAI 166
Query: 168 DPGGCFVAVSAYEDQFAVINLAI------SSERNVVYEKIYYPPESKID 40
D FVAVSAYED+FA+I +++ S + +K +YPPE++ D
Sbjct: 167 DRESSFVAVSAYEDKFALIQVSVCQSLHGSGRGTISDKKYFYPPENEED 215
>ref|XP_004955775.1| PREDICTED: splicing factor 3B subunit 3-like isoform X2 [Setaria
italica]
Length = 1358
Score = 120 bits (302), Expect = 1e-25
Identities = 63/109 (57%), Positives = 80/109 (73%), Gaps = 6/109 (5%)
Frame = -2
Query: 348 RHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAV 169
RH G Q + KD+L+VLSDSGKLSLL FC EMHRFFA+ +IELSKPGN RHQLGR+LA+
Sbjct: 107 RHIGLIPQIEHKDLLVVLSDSGKLSLLYFCPEMHRFFAIANIELSKPGNLRHQLGRVLAI 166
Query: 168 DPGGCFVAVSAYEDQFAVINLAI------SSERNVVYEKIYYPPESKID 40
D FVAVSAYED+FA+I +++ S + +K +YPPE++ D
Sbjct: 167 DRESSFVAVSAYEDKFALIQVSVCQSLHGSGRGTISDKKYFYPPENEED 215
>ref|XP_004955774.1| PREDICTED: splicing factor 3B subunit 3-like isoform X1 [Setaria
italica]
Length = 1360
Score = 120 bits (302), Expect = 1e-25
Identities = 63/109 (57%), Positives = 80/109 (73%), Gaps = 6/109 (5%)
Frame = -2
Query: 348 RHRGSPCQGQGKDILLVLSDSGKLSLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAV 169
RH G Q + KD+L+VLSDSGKLSLL FC EMHRFFA+ +IELSKPGN RHQLGR+LA+
Sbjct: 107 RHIGLIPQIEHKDLLVVLSDSGKLSLLYFCPEMHRFFAIANIELSKPGNLRHQLGRVLAI 166
Query: 168 DPGGCFVAVSAYEDQFAVINLAI------SSERNVVYEKIYYPPESKID 40
D FVAVSAYED+FA+I +++ S + +K +YPPE++ D
Sbjct: 167 DRESSFVAVSAYEDKFALIQVSVCQSLHGSGRGTISDKKYFYPPENEED 215