BLASTX nr result
ID: Zingiber24_contig00045416
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00045416
(239 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMT12557.1| Pre-mRNA cleavage complex 2 protein Pcf11 [Aegilo... 73 4e-11
gb|EMS50504.1| Pre-mRNA cleavage complex 2 protein Pcf11 [Tritic... 71 2e-10
ref|XP_006659895.1| PREDICTED: uncharacterized protein LOC102714... 66 4e-09
ref|XP_002316604.2| pre-mRNA cleavage complex-related family pro... 66 5e-09
ref|XP_003571399.1| PREDICTED: uncharacterized protein LOC100826... 65 9e-09
gb|AFW56901.1| hypothetical protein ZEAMMB73_788340 [Zea mays] 65 1e-08
ref|NP_001146686.1| hypothetical protein [Zea mays] gi|219888307... 65 1e-08
ref|XP_004972696.1| PREDICTED: uncharacterized protein LOC101756... 64 3e-08
ref|XP_004972695.1| PREDICTED: uncharacterized protein LOC101756... 64 3e-08
ref|NP_001061151.1| Os08g0187700 [Oryza sativa Japonica Group] g... 64 3e-08
gb|EAZ41747.1| hypothetical protein OsJ_26286 [Oryza sativa Japo... 64 3e-08
gb|EAZ05836.1| hypothetical protein OsI_28072 [Oryza sativa Indi... 64 3e-08
emb|CBI23183.3| unnamed protein product [Vitis vinifera] 62 6e-08
ref|XP_002264786.1| PREDICTED: uncharacterized protein LOC100255... 62 6e-08
gb|AFW61084.1| hypothetical protein ZEAMMB73_840390 [Zea mays] 61 2e-07
ref|XP_002304927.2| pre-mRNA cleavage complex-related family pro... 60 2e-07
ref|XP_006383938.1| hypothetical protein POPTR_0004s01970g [Popu... 60 2e-07
ref|XP_002445169.1| hypothetical protein SORBIDRAFT_07g005190 [S... 59 7e-07
gb|EOY28630.1| PCF11P-similar protein 4, putative isoform 1 [The... 59 9e-07
ref|XP_006858051.1| hypothetical protein AMTR_s00062p00031880 [A... 58 1e-06
>gb|EMT12557.1| Pre-mRNA cleavage complex 2 protein Pcf11 [Aegilops tauschii]
Length = 936
Score = 72.8 bits (177), Expect = 4e-11
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQQSAGVQQTRLPT 179
IEDELQ SPS+++R +T + S+SLSPRPSHGIHVNPKYLEA+ Q G + +L T
Sbjct: 152 IEDELQFSPSENKRPATTTIPRQSESLSPRPSHGIHVNPKYLEAQHQLKNGTKVDQLAT 210
>gb|EMS50504.1| Pre-mRNA cleavage complex 2 protein Pcf11 [Triticum urartu]
Length = 1006
Score = 70.9 bits (172), Expect = 2e-10
Identities = 34/59 (57%), Positives = 43/59 (72%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQQSAGVQQTRLPT 179
IEDELQ SPS+++R +T + +SLSPRPSHGIHVNPKYLEA+ Q G + +L T
Sbjct: 80 IEDELQFSPSENKRPATTTIPRQPESLSPRPSHGIHVNPKYLEAQHQLKNGTKVDQLAT 138
>ref|XP_006659895.1| PREDICTED: uncharacterized protein LOC102714667 [Oryza brachyantha]
Length = 879
Score = 66.2 bits (160), Expect = 4e-09
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ 143
IEDELQ SP +++R + + + S+S+SPRPSHGIHVNPKYLEA++Q
Sbjct: 83 IEDELQFSPLENKRPAAVSDIRQSESISPRPSHGIHVNPKYLEAQQQ 129
>ref|XP_002316604.2| pre-mRNA cleavage complex-related family protein [Populus
trichocarpa] gi|550327247|gb|EEE97216.2| pre-mRNA
cleavage complex-related family protein [Populus
trichocarpa]
Length = 1031
Score = 65.9 bits (159), Expect = 5e-09
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYL-EARRQQSAGVQQTRLPT 179
IE +LQLS + ++S++ S K S+S PRPSHGIHVNPKYL + + VQ T+ +
Sbjct: 180 IETQLQLSSQINNQSSSLTSLKASES--PRPSHGIHVNPKYLRQMDSSRDNNVQHTKGTS 237
Query: 180 GIQVYGQKPIARSSEYDFDQ 239
+++YG KP EY+ DQ
Sbjct: 238 NLKMYGHKPAVGYDEYETDQ 257
>ref|XP_003571399.1| PREDICTED: uncharacterized protein LOC100826665 [Brachypodium
distachyon]
Length = 938
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ 143
IEDELQ SPS+++ + + + S+SLSPRPSHGIHVNPKYLEA++Q
Sbjct: 154 IEDELQFSPSENKFPARATNLRQSESLSPRPSHGIHVNPKYLEAQQQ 200
>gb|AFW56901.1| hypothetical protein ZEAMMB73_788340 [Zea mays]
Length = 488
Score = 64.7 bits (156), Expect = 1e-08
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ-------QSAGVQ 161
IED+LQ SPS++ R +T + ++SLSPRPSHGIHVNPKYLEA+ + + Q
Sbjct: 152 IEDDLQFSPSENNRPTTSTNVHQTESLSPRPSHGIHVNPKYLEAQHKFKRVNVAHQSAAQ 211
Query: 162 QTRLPTGIQ 188
TR + +Q
Sbjct: 212 DTRQMSDVQ 220
>ref|NP_001146686.1| hypothetical protein [Zea mays] gi|219888307|gb|ACL54528.1| unknown
[Zea mays] gi|413916970|gb|AFW56902.1| hypothetical
protein ZEAMMB73_788340 [Zea mays]
Length = 729
Score = 64.7 bits (156), Expect = 1e-08
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ-------QSAGVQ 161
IED+LQ SPS++ R +T + ++SLSPRPSHGIHVNPKYLEA+ + + Q
Sbjct: 152 IEDDLQFSPSENNRPTTSTNVHQTESLSPRPSHGIHVNPKYLEAQHKFKRVNVAHQSAAQ 211
Query: 162 QTRLPTGIQ 188
TR + +Q
Sbjct: 212 DTRQMSDVQ 220
>ref|XP_004972696.1| PREDICTED: uncharacterized protein LOC101756392 isoform X2 [Setaria
italica]
Length = 961
Score = 63.5 bits (153), Expect = 3e-08
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ 143
IED+LQ SPS +R + + S+SLSPRPSHGIHVNPKYLEA+++
Sbjct: 151 IEDDLQFSPSQEKRPAIATNPHQSESLSPRPSHGIHVNPKYLEAQQK 197
>ref|XP_004972695.1| PREDICTED: uncharacterized protein LOC101756392 isoform X1 [Setaria
italica]
Length = 964
Score = 63.5 bits (153), Expect = 3e-08
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ 143
IED+LQ SPS +R + + S+SLSPRPSHGIHVNPKYLEA+++
Sbjct: 151 IEDDLQFSPSQEKRPAIATNPHQSESLSPRPSHGIHVNPKYLEAQQK 197
>ref|NP_001061151.1| Os08g0187700 [Oryza sativa Japonica Group]
gi|38637067|dbj|BAD03324.1| putative S-locus protein 4
[Oryza sativa Japonica Group]
gi|113623120|dbj|BAF23065.1| Os08g0187700 [Oryza sativa
Japonica Group] gi|215704629|dbj|BAG94257.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 971
Score = 63.5 bits (153), Expect = 3e-08
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ--QSAGVQQ 164
IEDELQ SP +++R++T + S+S+SPR SH IHVNPKYLEA++Q QS V Q
Sbjct: 160 IEDELQFSPLENKRSATATDIRQSESISPRLSHAIHVNPKYLEAQQQFKQSTSVHQ 215
>gb|EAZ41747.1| hypothetical protein OsJ_26286 [Oryza sativa Japonica Group]
Length = 974
Score = 63.5 bits (153), Expect = 3e-08
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ--QSAGVQQ 164
IEDELQ SP +++R++T + S+S+SPR SH IHVNPKYLEA++Q QS V Q
Sbjct: 160 IEDELQFSPLENKRSATATDIRQSESISPRLSHAIHVNPKYLEAQQQFKQSTSVHQ 215
>gb|EAZ05836.1| hypothetical protein OsI_28072 [Oryza sativa Indica Group]
Length = 970
Score = 63.5 bits (153), Expect = 3e-08
Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ--QSAGVQQ 164
IEDELQ SP +++R++T + S+S+SPR SH IHVNPKYLEA++Q QS V Q
Sbjct: 160 IEDELQFSPLENKRSATATDIRQSESISPRLSHAIHVNPKYLEAQQQFKQSTSVHQ 215
>emb|CBI23183.3| unnamed protein product [Vitis vinifera]
Length = 1003
Score = 62.4 bits (150), Expect = 6e-08
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ-----QSAGVQQT 167
IE +LQ SP+ + ++S + S + S+S PRP+H IHVNPKYLEAR Q + +Q +
Sbjct: 235 IEAQLQFSPTLNNQSSGMASLRASES--PRPTHSIHVNPKYLEARHQFEHSPVDSNMQHS 292
Query: 168 R-LPTGIQVYGQKPIARSSEYD 230
R + ++VYGQKP EYD
Sbjct: 293 RGTSSTLKVYGQKPAIGYDEYD 314
>ref|XP_002264786.1| PREDICTED: uncharacterized protein LOC100255600 [Vitis vinifera]
Length = 1000
Score = 62.4 bits (150), Expect = 6e-08
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ-----QSAGVQQT 167
IE +LQ SP+ + ++S + S + S+S PRP+H IHVNPKYLEAR Q + +Q +
Sbjct: 160 IEAQLQFSPTLNNQSSGMASLRASES--PRPTHSIHVNPKYLEARHQFEHSPVDSNMQHS 217
Query: 168 R-LPTGIQVYGQKPIARSSEYD 230
R + ++VYGQKP EYD
Sbjct: 218 RGTSSTLKVYGQKPAIGYDEYD 239
>gb|AFW61084.1| hypothetical protein ZEAMMB73_840390 [Zea mays]
Length = 476
Score = 60.8 bits (146), Expect = 2e-07
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ 143
IED+LQ S S++ R +T + ++SLSPRPSHGIHVNPKYLEA+ +
Sbjct: 152 IEDDLQFSSSENNRPTTSTNLHQTESLSPRPSHGIHVNPKYLEAQHK 198
>ref|XP_002304927.2| pre-mRNA cleavage complex-related family protein [Populus
trichocarpa] gi|550340120|gb|EEE85438.2| pre-mRNA
cleavage complex-related family protein [Populus
trichocarpa]
Length = 841
Score = 60.5 bits (145), Expect = 2e-07
Identities = 31/79 (39%), Positives = 46/79 (58%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQQSAGVQQTRLPTG 182
IE +L SP + ++S++ S + S+S PRP HGIHVNPKYL +A +
Sbjct: 187 IETQLHFSPQVNDQSSSLTSFRASES--PRPPHGIHVNPKYLRQLDHSTADNHAKGTSSN 244
Query: 183 IQVYGQKPIARSSEYDFDQ 239
+++YG+KP EY+ DQ
Sbjct: 245 LKIYGKKPTVGYDEYESDQ 263
>ref|XP_006383938.1| hypothetical protein POPTR_0004s01970g [Populus trichocarpa]
gi|550340119|gb|ERP61735.1| hypothetical protein
POPTR_0004s01970g [Populus trichocarpa]
Length = 852
Score = 60.5 bits (145), Expect = 2e-07
Identities = 31/79 (39%), Positives = 46/79 (58%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQQSAGVQQTRLPTG 182
IE +L SP + ++S++ S + S+S PRP HGIHVNPKYL +A +
Sbjct: 187 IETQLHFSPQVNDQSSSLTSFRASES--PRPPHGIHVNPKYLRQLDHSTADNHAKGTSSN 244
Query: 183 IQVYGQKPIARSSEYDFDQ 239
+++YG+KP EY+ DQ
Sbjct: 245 LKIYGKKPTVGYDEYESDQ 263
>ref|XP_002445169.1| hypothetical protein SORBIDRAFT_07g005190 [Sorghum bicolor]
gi|241941519|gb|EES14664.1| hypothetical protein
SORBIDRAFT_07g005190 [Sorghum bicolor]
Length = 955
Score = 58.9 bits (141), Expect = 7e-07
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ 143
IED+LQ SPS++ R +T S ++SLSPR SHGIHVNPKYLEA+ +
Sbjct: 152 IEDDLQFSPSETNRPTT--STNQTESLSPRLSHGIHVNPKYLEAQHK 196
>gb|EOY28630.1| PCF11P-similar protein 4, putative isoform 1 [Theobroma cacao]
Length = 1004
Score = 58.5 bits (140), Expect = 9e-07
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQQSAGVQQTRLPTG 182
IE +LQ S S ++++ + S + S+S PRP+HGIHVNPKYL QQS T+ G
Sbjct: 165 IEIQLQFSQSANQQSPGVTSLRSSES--PRPTHGIHVNPKYLRQLEQQSGADSNTQHVRG 222
Query: 183 ----IQVYGQKPIARSSEYDFD 236
++VYGQK E+D D
Sbjct: 223 TSAALKVYGQKHSIGFDEFDSD 244
>ref|XP_006858051.1| hypothetical protein AMTR_s00062p00031880 [Amborella trichopoda]
gi|548862154|gb|ERN19518.1| hypothetical protein
AMTR_s00062p00031880 [Amborella trichopoda]
Length = 1045
Score = 57.8 bits (138), Expect = 1e-06
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = +3
Query: 3 IEDELQLSPSDSRRTSTIISNKPSKSLSPRPSHGIHVNPKYLEARRQ 143
IE ELQ SP R +S + ++PS S PRP+HGIHVNPKYLEARRQ
Sbjct: 168 IEVELQFSPV-RRPSSGMAPSRPSDSQPPRPAHGIHVNPKYLEARRQ 213