BLASTX nr result
ID: Zingiber24_contig00045176
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00045176
(323 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [S... 127 1e-27
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub... 124 1e-26
gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indi... 123 3e-26
tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family... 119 3e-25
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub... 119 4e-25
gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza... 119 4e-25
gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza... 119 6e-25
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps... 116 3e-24
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr... 114 1e-23
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th... 114 2e-23
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th... 114 2e-23
dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryz... 113 3e-23
emb|CBI29879.3| unnamed protein product [Vitis vinifera] 112 4e-23
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub... 112 4e-23
gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus... 111 1e-22
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni... 110 2e-22
gb|ACN85238.1| putative RNA polymerase A(I) large subunit [Oryza... 108 6e-22
ref|XP_002308049.1| predicted protein [Populus trichocarpa] 108 7e-22
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 105 8e-21
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub... 105 8e-21
>ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [Sorghum bicolor]
gi|241945458|gb|EES18603.1| hypothetical protein
SORBIDRAFT_09g027223 [Sorghum bicolor]
Length = 799
Score = 127 bits (320), Expect = 1e-27
Identities = 56/81 (69%), Positives = 68/81 (83%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
+NDTD CKSCGQ SVRCPGH GHI+LAKP++NPLLF L+NLL VTCF+CHKFR N+++V
Sbjct: 60 INDTDTCKSCGQNSVRCPGHFGHIELAKPLFNPLLFMSLRNLLHVTCFYCHKFRLNKEQV 119
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
V +L L+VKGDI GA+NL
Sbjct: 120 DRYVNELELLVKGDIVGAKNL 140
>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
italica]
Length = 1682
Score = 124 bits (311), Expect = 1e-26
Identities = 55/81 (67%), Positives = 67/81 (82%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
+NDTD CKSCGQ SVRCPGH GHI+LAKP++NPLLF L+NLL VTCF CHKFR N+++V
Sbjct: 78 INDTDTCKSCGQHSVRCPGHFGHIELAKPLFNPLLFTSLKNLLHVTCFHCHKFRLNKEQV 137
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
V +L L+VKGD+A A+NL
Sbjct: 138 DRYVNELELLVKGDVARAKNL 158
>gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indica Group]
Length = 1350
Score = 123 bits (308), Expect = 3e-26
Identities = 54/80 (67%), Positives = 66/80 (82%)
Frame = +1
Query: 4 NDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKVK 183
NDTD CKSCGQ S+RCPGH GHI+LAKP++NPLLF L+NLLQVTCF CHKFR N+++V
Sbjct: 154 NDTDTCKSCGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLQVTCFHCHKFRLNKEQVD 213
Query: 184 HCVEQLRLIVKGDIAGARNL 243
+L L+V+GDIA A+NL
Sbjct: 214 RYTNELELLVRGDIAHAKNL 233
>tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 548
Score = 119 bits (299), Expect = 3e-25
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
+ND D CKSCGQ SVRCPGH GHI+LAKP++NPLLF L+NLL VTCF CHKFR N+++V
Sbjct: 60 INDIDICKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNKEQV 119
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
V +L L+VKGDI A+NL
Sbjct: 120 DRYVNELELLVKGDIVCAKNL 140
>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
brachyantha]
Length = 1755
Score = 119 bits (298), Expect = 4e-25
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +1
Query: 4 NDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKVK 183
+DTD CKSCGQ SVRCPGH GHI+LAKP++NPLLF L+NLL +TCF CHKFR N ++V
Sbjct: 60 SDTDTCKSCGQHSVRCPGHFGHIELAKPLFNPLLFLSLKNLLHMTCFHCHKFRLNREQVD 119
Query: 184 HCVEQLRLIVKGDIAGARNL 243
++L L+VKGDIA A+NL
Sbjct: 120 RYTDELELLVKGDIAHAKNL 139
>gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza brachyantha]
Length = 1138
Score = 119 bits (298), Expect = 4e-25
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +1
Query: 4 NDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKVK 183
+DTD CKSCGQ SVRCPGH GHI+LAKP++NPLLF L+NLL +TCF CHKFR N ++V
Sbjct: 60 SDTDTCKSCGQHSVRCPGHFGHIELAKPLFNPLLFLSLKNLLHMTCFHCHKFRLNREQVD 119
Query: 184 HCVEQLRLIVKGDIAGARNL 243
++L L+VKGDIA A+NL
Sbjct: 120 RYTDELELLVKGDIAHAKNL 139
>gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
Length = 1830
Score = 119 bits (297), Expect = 6e-25
Identities = 54/80 (67%), Positives = 63/80 (78%)
Frame = +1
Query: 4 NDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKVK 183
NDTD CKSCGQ SVRCPGH GHI+LAKP++NPLLF L+NLL VTCF CHKFR N +V
Sbjct: 60 NDTDTCKSCGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNRGQVD 119
Query: 184 HCVEQLRLIVKGDIAGARNL 243
+L L+V+GDIA A+NL
Sbjct: 120 RYTNELELLVRGDIALAKNL 139
>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
gi|482559195|gb|EOA23386.1| hypothetical protein
CARUB_v10016563mg [Capsella rubella]
Length = 1651
Score = 116 bits (291), Expect = 3e-24
Identities = 51/81 (62%), Positives = 60/81 (74%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
LND + CKSCGQL + CPGHCGHI+L PIY+PLLF +L N LQ TCFFCH F + V
Sbjct: 60 LNDKEACKSCGQLRLGCPGHCGHIELVYPIYHPLLFSLLYNFLQRTCFFCHHFMAKPNDV 119
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
K CV QL+LI+KGDI A+ L
Sbjct: 120 KKCVSQLKLIMKGDIVSAKQL 140
>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
gi|557103957|gb|ESQ44311.1| hypothetical protein
EUTSA_v10005738mg [Eutrema salsugineum]
Length = 1697
Score = 114 bits (285), Expect = 1e-23
Identities = 49/81 (60%), Positives = 62/81 (76%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
L+D CKSCGQLS+ CPGHCGHI+L PIY+PLLF +L N LQ TCFFCH F N++ V
Sbjct: 60 LDDRTSCKSCGQLSLVCPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFFCHHFMANKNDV 119
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
+ CV QL+LI+KG++ A+ L
Sbjct: 120 ERCVSQLKLIMKGNLVAAKQL 140
>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
Length = 1689
Score = 114 bits (284), Expect = 2e-23
Identities = 50/81 (61%), Positives = 57/81 (70%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
L D PCKSCG L + CPGHCGHIDL PIYNPLLF L LLQ CFFC+ FR + +V
Sbjct: 58 LEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEV 117
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
+ CV QL+LI GDI GA+ L
Sbjct: 118 ERCVSQLKLIGNGDIVGAKRL 138
>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
Length = 1665
Score = 114 bits (284), Expect = 2e-23
Identities = 50/81 (61%), Positives = 57/81 (70%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
L D PCKSCG L + CPGHCGHIDL PIYNPLLF L LLQ CFFC+ FR + +V
Sbjct: 58 LEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEV 117
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
+ CV QL+LI GDI GA+ L
Sbjct: 118 ERCVSQLKLIGNGDIVGAKRL 138
>dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
Group]
Length = 1748
Score = 113 bits (282), Expect = 3e-23
Identities = 53/88 (60%), Positives = 65/88 (73%), Gaps = 8/88 (9%)
Frame = +1
Query: 4 NDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKVK 183
NDTD CKSCGQ S+RCPGH GHI+LAKP++NPLLF L+NLLQVTCF CHKFR N+++
Sbjct: 60 NDTDTCKSCGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLQVTCFHCHKFRLNKEQHS 119
Query: 184 HCVE--------QLRLIVKGDIAGARNL 243
+L L+V+GDIA A+NL
Sbjct: 120 RFCRITKIFDFLELELLVRGDIAHAKNL 147
>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 112 bits (281), Expect = 4e-23
Identities = 48/81 (59%), Positives = 59/81 (72%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
+++ PC+SCGQ S CPGHCGHIDL +YNPLLF +L NLLQ TCFFCH F+ + V
Sbjct: 58 IDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLV 117
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
+ V QL LI KGD+ GA+NL
Sbjct: 118 QKYVSQLELISKGDVVGAKNL 138
>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
vinifera]
Length = 1740
Score = 112 bits (281), Expect = 4e-23
Identities = 48/81 (59%), Positives = 59/81 (72%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
+++ PC+SCGQ S CPGHCGHIDL +YNPLLF +L NLLQ TCFFCH F+ + V
Sbjct: 107 IDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLV 166
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
+ V QL LI KGD+ GA+NL
Sbjct: 167 QKYVSQLELISKGDVVGAKNL 187
>gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
Length = 1770
Score = 111 bits (277), Expect = 1e-22
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +1
Query: 19 CKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKVKHCVEQ 198
CKSCGQ + CPGHCGHIDL PIYNPLLF IL ++L+ TCF C+ FR+N +VK CV Q
Sbjct: 6 CKSCGQRQLNCPGHCGHIDLVSPIYNPLLFNILYSILKRTCFSCYHFRRNPVEVKKCVSQ 65
Query: 199 LRLIVKGDIAGARNL 243
L LI+KGD+A A++L
Sbjct: 66 LELILKGDVARAKDL 80
>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
polymerase I largest subunit, putative [Ricinus
communis]
Length = 1686
Score = 110 bits (276), Expect = 2e-22
Identities = 48/81 (59%), Positives = 57/81 (70%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
L++ CK+CGQ S CPGHCGHIDL P+YNPLLF L LLQ TCF C FR +V
Sbjct: 61 LSERTICKTCGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQV 120
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
+ C++QL LIVKGDI GA+ L
Sbjct: 121 EKCIKQLELIVKGDIVGAKRL 141
>gb|ACN85238.1| putative RNA polymerase A(I) large subunit [Oryza minuta]
Length = 563
Score = 108 bits (271), Expect = 6e-22
Identities = 51/86 (59%), Positives = 62/86 (72%), Gaps = 8/86 (9%)
Frame = +1
Query: 10 TDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNED----- 174
TD CKSCGQ S+RCPGH GHI+LAKP++NPLLF L+NLL VTCF CHKFR N +
Sbjct: 62 TDTCKSCGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNREQFSLS 121
Query: 175 ---KVKHCVEQLRLIVKGDIAGARNL 243
+V +L L+V+GDIA A+NL
Sbjct: 122 WSIQVDRYTNELELLVRGDIAHAKNL 147
>ref|XP_002308049.1| predicted protein [Populus trichocarpa]
Length = 1168
Score = 108 bits (270), Expect = 7e-22
Identities = 46/77 (59%), Positives = 56/77 (72%)
Frame = +1
Query: 13 DPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKVKHCV 192
+PCK+CGQ S C GHCGHIDL P+YNPLLF L LLQ TCFFC FR + ++V+ V
Sbjct: 60 EPCKTCGQRSTNCTGHCGHIDLISPVYNPLLFNFLHKLLQRTCFFCFHFRADSNQVEKFV 119
Query: 193 EQLRLIVKGDIAGARNL 243
QL LI+KGD+ GA+ L
Sbjct: 120 SQLELIIKGDVVGAKRL 136
>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1-like [Cucumis sativus]
Length = 1652
Score = 105 bits (261), Expect = 8e-21
Identities = 47/81 (58%), Positives = 56/81 (69%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
L++T CKSCGQ CPGHCGHIDL P+YNPLLF IL N L+ TCF CH FR E V
Sbjct: 64 LDETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMV 123
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
++C L LI+ G+IA A+ L
Sbjct: 124 ENCKTLLELILDGEIAKAKEL 144
>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
sativus]
Length = 1650
Score = 105 bits (261), Expect = 8e-21
Identities = 47/81 (58%), Positives = 56/81 (69%)
Frame = +1
Query: 1 LNDTDPCKSCGQLSVRCPGHCGHIDLAKPIYNPLLFKILQNLLQVTCFFCHKFRKNEDKV 180
L++T CKSCGQ CPGHCGHIDL P+YNPLLF IL N L+ TCF CH FR E V
Sbjct: 58 LDETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMV 117
Query: 181 KHCVEQLRLIVKGDIAGARNL 243
++C L LI+ G+IA A+ L
Sbjct: 118 ENCKTLLELILDGEIAKAKEL 138