BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00045008
         (360 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                      97   2e-18
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...    85   9e-15
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]      85   9e-15
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]          84   2e-14
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...    83   3e-14
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...    82   1e-13
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]      82   1e-13
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...    78   1e-12
ref|XP_006371206.1| hypothetical protein POPTR_0019s05880g [Popu...    66   4e-09
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...    64   2e-08
gb|AAD17357.1| contains similarity to retrovirus-related polypro...    63   4e-08
gb|EXC11736.1| hypothetical protein L484_020791 [Morus notabilis]      60   2e-07
ref|XP_006369910.1| hypothetical protein POPTR_0001s34915g [Popu...    59   7e-07
gb|ABA94675.1| retrotransposon protein, putative, Ty1-copia subc...    56   4e-06

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 56/122 (45%), Positives = 66/122 (54%), Gaps = 30/122 (24%)
 Frame = -2

Query: 278 CHHCGEMGHWKRNCKIYLESLKKK--TTS----------------------------DAP 189
           C +C E GHWKRNCK Y+E LKKK  TTS                               
Sbjct: 255 CFYCKETGHWKRNCKKYMEDLKKKQSTTSASGINVIDINLATSPTDSWVFDTGSVAHSCK 314

Query: 188 SASGAKE**KTGQRKGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINN 9
           S  G +     G R+GEVNLRVGNGA VA +A+GT  L LPSGLVLEL+NCY V +L  N
Sbjct: 315 SLQGMRR--SRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQN 372

Query: 8   IV 3
           ++
Sbjct: 373 VI 374


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1142

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 49/122 (40%), Positives = 64/122 (52%), Gaps = 30/122 (24%)
 Frame = -2

Query: 278 CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAK------------------------ 171
           C  C E GHWKRN K YLE LK+K      S SG                          
Sbjct: 305 CFFCKETGHWKRNYKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTESVAHI 364

Query: 170 ----E**KTGQR--KGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINN 9
               +  K  +   +GEV++RVGNGA+VAA+A+GT  L LPSG+VLEL+NCY + +L  N
Sbjct: 365 CKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCKN 424

Query: 8   IV 3
           ++
Sbjct: 425 VI 426


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 49/122 (40%), Positives = 64/122 (52%), Gaps = 30/122 (24%)
 Frame = -2

Query: 278 CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAK------------------------ 171
           C  C E GHWKRN K YLE LK+K      S SG                          
Sbjct: 232 CFFCKETGHWKRNYKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTESVAHI 291

Query: 170 ----E**KTGQR--KGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINN 9
               +  K  +   +GEV++RVGNGA+VAA+A+GT  L LPSG+VLEL+NCY + +L  N
Sbjct: 292 CKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCKN 351

Query: 8   IV 3
           ++
Sbjct: 352 VI 353


>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
          Length = 923

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 30/117 (25%)
 Frame = -2

Query: 263 EMGHWKRNCKIYLESLKKKTTSDAPSASGAK----------------------------E 168
           E GHWKRNCK YLE LK+K  +   S SG                              +
Sbjct: 217 ETGHWKRNCKKYLEQLKQKQQNGKSSTSGINVIEINLATSSTDSWVFDTGLVAHICKSLQ 276

Query: 167 **KTGQR--KGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINNIV 3
             K  +   +GEV++RVGNGA+VA +A+GT  L LPSGLVLEL+NCY + +L  N++
Sbjct: 277 GLKRSRSLARGEVDIRVGNGARVAVVAVGTMSLSLPSGLVLELNNCYCIPALCKNVI 333


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 50/122 (40%), Positives = 62/122 (50%), Gaps = 30/122 (24%)
 Frame = -2

Query: 278 CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAKE**-------------KTGQ---- 150
           C  C E GHWKRNCK YLE LK+K      S SG                   TG     
Sbjct: 229 CFFCKEAGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTGSVAHI 288

Query: 149 -------------RKGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINN 9
                         +GEV++RVGNGA+VAA+A+GT  L LPS LVLEL+N Y + +L  N
Sbjct: 289 CKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSRLVLELNNYYCIPALCKN 348

Query: 8   IV 3
           ++
Sbjct: 349 VI 350


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1073

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 48/122 (39%), Positives = 60/122 (49%), Gaps = 30/122 (24%)
 Frame = -2

Query: 278 CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAKE**-------------KTGQ---- 150
           C    E GHWKRNCK YLE LK+K      S SG                   TG     
Sbjct: 345 CFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTGSVAHI 404

Query: 149 -------------RKGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINN 9
                         +G V++RVGNG +VA +A+GT  L LPSGLVLEL+NCY + +L  N
Sbjct: 405 CKSLQGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKN 464

Query: 8   IV 3
           ++
Sbjct: 465 VI 466


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 48/122 (39%), Positives = 60/122 (49%), Gaps = 30/122 (24%)
 Frame = -2

Query: 278 CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAKE**-------------KTGQ---- 150
           C    E GHWKRNCK YLE LK+K      S SG                   TG     
Sbjct: 345 CFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTGSVAHI 404

Query: 149 -------------RKGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINN 9
                         +G V++RVGNG +VA +A+GT  L LPSGLVLEL+NCY + +L  N
Sbjct: 405 CKSLQGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKN 464

Query: 8   IV 3
           ++
Sbjct: 465 VI 466


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 49/122 (40%), Positives = 62/122 (50%), Gaps = 30/122 (24%)
 Frame = -2

Query: 278 CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAKE**-------------KTGQ---- 150
           C +C E GHWKRNCK YL  LKK   +  PS SG                   TG     
Sbjct: 342 CFYCKEPGHWKRNCKKYLADLKKNGGTK-PSTSGINVIDVLLADSSVNSWVFDTGSVAHI 400

Query: 149 -------------RKGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINN 9
                         +GE++LRVGN AKVAA++  T  L LPSG ++EL+NCYYV ++  N
Sbjct: 401 CNSMQSLTKNRRVARGEMDLRVGNKAKVAALSAETLPLVLPSGFIMELNNCYYVPAMSRN 460

Query: 8   IV 3
           I+
Sbjct: 461 II 462


>ref|XP_006371206.1| hypothetical protein POPTR_0019s05880g [Populus trichocarpa]
           gi|550316895|gb|ERP49003.1| hypothetical protein
           POPTR_0019s05880g [Populus trichocarpa]
          Length = 232

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
 Frame = -2

Query: 281 SCHHCGEMGHWKRNCKIYLESLKKKTTSDAPSAS------GAKE**KTGQR--KGEVNLR 126
           +CHHCG+ GHW+R+CK YL  +K    +               +  K  +R  +G+VNLR
Sbjct: 129 TCHHCGKEGHWRRDCKEYLAIMKTYKLNKVLDIEYGFYICNCMQELKKNRRLVEGKVNLR 188

Query: 125 VGNGAKVAAIAIGT-YLLK-------LPSGLVLELDNCYYV 27
           + N  +V A+A+ T Y L        LP+GL+LEL NCY+V
Sbjct: 189 LSNEVRVVALAVKTSYALAVETSYFVLPNGLILELYNCYFV 229


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550379|gb|ABA93176.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 938

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 28/48 (58%), Positives = 38/48 (79%)
 Frame = -2

Query: 146 KGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINNIV 3
           +GEV++ VGNGA V A+A+GT  L LPSGLVLEL+NCY + +L  N++
Sbjct: 212 RGEVDIHVGNGASVVAVAVGTMPLSLPSGLVLELNNCYCILALCKNVI 259


>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
           thaliana] gi|7267382|emb|CAB77943.1| putative transposon
           protein [Arabidopsis thaliana]
          Length = 769

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 26/48 (54%), Positives = 38/48 (79%)
 Frame = -2

Query: 146 KGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINNIV 3
           +G+V+LR+ NGA+V+ + +GTY L  PSG+VLEL NCYYV ++  NI+
Sbjct: 84  EGQVDLRMANGARVSTLVVGTYSLSFPSGMVLELKNCYYVHAINKNII 131


>gb|EXC11736.1| hypothetical protein L484_020791 [Morus notabilis]
          Length = 330

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = -2

Query: 284 GSCHHCGEMGHWKRNCKIYLESLKKKT---TSDAPSASGAKE**KTGQRKGEVNLRVGNG 114
           G C HC   GHWKRNC  YLE LKKK     SD  S S   E        G+  ++VGNG
Sbjct: 157 GKCFHCNGEGHWKRNCHKYLEELKKKKEQGKSDLLSLSSYTE-----LADGDYTMKVGNG 211

Query: 113 AKVAAIAIG 87
           A+V+A A+G
Sbjct: 212 ARVSAKAVG 220


>ref|XP_006369910.1| hypothetical protein POPTR_0001s34915g [Populus trichocarpa]
           gi|550348894|gb|ERP66479.1| hypothetical protein
           POPTR_0001s34915g [Populus trichocarpa]
          Length = 120

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 27/48 (56%), Positives = 33/48 (68%)
 Frame = -2

Query: 146 KGEVNLRVGNGAKVAAIAIGTYLLKLPSGLVLELDNCYYVSSLINNIV 3
           KGEV+L VGNG K   + + TY L    G++LELDNCY+VS L  NIV
Sbjct: 14  KGEVDLYVGNGTKAVTLTVETYYLTFQIGIILELDNCYFVSILSRNIV 61


>gb|ABA94675.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 815

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
 Frame = -2

Query: 281 SCHHCGEMGHWKRNCKIYLESLKKK--TTSDAPSASGAKE**KTGQRKGEVNLRVGNGAK 108
           +C  C + GH++++C  +L+ L KK  T   A S  G     +    +GE  +RV NG +
Sbjct: 228 ACRWCKQKGHFQKDCPEFLKHLLKKGATIHVANSLQGFHT--RRMLARGERCIRVANGVE 285

Query: 107 VAAIAIGTYLLKLPSGLVLELDNCYYVSSLINNIV 3
               AIG Y LKL +G  L L N  YV SL  N+V
Sbjct: 286 AEVEAIGEYPLKLNNGFTLYLHNVLYVPSLSRNLV 320