BLASTX nr result
ID: Zingiber24_contig00044597
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00044597
(241 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB54541.1| hypothetical protein L484_006289 [Morus notabilis] 71 2e-10
gb|EOY31012.1| RNA polymerase II transcription mediators isoform... 69 6e-10
gb|EOY31011.1| RNA polymerase II transcription mediators isoform... 69 6e-10
gb|EOY31009.1| RNA polymerase II transcription mediators isoform... 69 6e-10
ref|XP_004300164.1| PREDICTED: mediator of RNA polymerase II tra... 68 1e-09
gb|EMJ05807.1| hypothetical protein PRUPE_ppa002594mg [Prunus pe... 67 3e-09
ref|XP_002285089.1| PREDICTED: uncharacterized protein LOC100266... 63 4e-08
ref|XP_006475818.1| PREDICTED: mediator of RNA polymerase II tra... 63 5e-08
ref|XP_006450970.1| hypothetical protein CICLE_v10007689mg [Citr... 62 8e-08
ref|XP_004251571.1| PREDICTED: mediator of RNA polymerase II tra... 62 1e-07
ref|XP_006364902.1| PREDICTED: mediator of RNA polymerase II tra... 61 2e-07
ref|XP_006842865.1| hypothetical protein AMTR_s00081p00160620 [A... 59 7e-07
gb|AFW79767.1| hypothetical protein ZEAMMB73_523859 [Zea mays] 59 9e-07
ref|NP_001145828.1| uncharacterized protein LOC100279335 [Zea ma... 59 9e-07
ref|NP_001067381.1| Os12g0638600 [Oryza sativa Japonica Group] g... 57 3e-06
gb|EEE53678.1| hypothetical protein OsJ_37013 [Oryza sativa Japo... 57 3e-06
ref|XP_002457523.1| hypothetical protein SORBIDRAFT_03g008700 [S... 56 4e-06
gb|ACN26952.1| unknown [Zea mays] gi|413926580|gb|AFW66512.1| hy... 56 4e-06
gb|EOY31014.1| RNA polymerase II transcription mediators isoform... 56 6e-06
ref|XP_004967947.1| PREDICTED: mediator of RNA polymerase II tra... 55 7e-06
>gb|EXB54541.1| hypothetical protein L484_006289 [Morus notabilis]
Length = 701
Score = 70.9 bits (172), Expect = 2e-10
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 30/109 (27%)
Frame = -3
Query: 239 LSHPPWHSRTSSW-----------------------------SQLHTKIVVKDDQVTVSG 147
LSHP W+SRTSSW SQ TK+V+KDD ++V G
Sbjct: 454 LSHPTWNSRTSSWTIFMKIPQSILHGGSHQTSDLHHMKSTTKSQFRTKVVIKDDFISVEG 513
Query: 146 EGAPSTLCSFRIS-PNVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
EGAP+ + F+ S VSS++ YEC +AG+I+RWLH+E
Sbjct: 514 EGAPNVVGLFKGSAQEVSSMNRYECNLEDLPVIILQQVAGQIVRWLHEE 562
>gb|EOY31012.1| RNA polymerase II transcription mediators isoform 4 [Theobroma
cacao]
Length = 556
Score = 68.9 bits (167), Expect = 6e-10
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 31/110 (28%)
Frame = -3
Query: 239 LSHPPWHSRTSSW------------------------------SQLHTKIVVKDDQVTVS 150
++HP WHSRTSSW SQ TK+VV DD++ V
Sbjct: 351 MTHPTWHSRTSSWTIFMKVPQSILHVESQSQKSDFQNMKDAIKSQFRTKVVVNDDRINVE 410
Query: 149 GEGAPSTLCSF-RISPNVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
GEGAP+ + F R S ++ SV+ Y+C +A ++IRWLH+E
Sbjct: 411 GEGAPNVVGLFKRSSEDICSVNKYDCDLADLPVIILQQVASQVIRWLHEE 460
>gb|EOY31011.1| RNA polymerase II transcription mediators isoform 3 [Theobroma
cacao] gi|508783757|gb|EOY31013.1| RNA polymerase II
transcription mediators isoform 3 [Theobroma cacao]
Length = 527
Score = 68.9 bits (167), Expect = 6e-10
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 31/110 (28%)
Frame = -3
Query: 239 LSHPPWHSRTSSW------------------------------SQLHTKIVVKDDQVTVS 150
++HP WHSRTSSW SQ TK+VV DD++ V
Sbjct: 322 MTHPTWHSRTSSWTIFMKVPQSILHVESQSQKSDFQNMKDAIKSQFRTKVVVNDDRINVE 381
Query: 149 GEGAPSTLCSF-RISPNVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
GEGAP+ + F R S ++ SV+ Y+C +A ++IRWLH+E
Sbjct: 382 GEGAPNVVGLFKRSSEDICSVNKYDCDLADLPVIILQQVASQVIRWLHEE 431
>gb|EOY31009.1| RNA polymerase II transcription mediators isoform 1 [Theobroma
cacao] gi|508783754|gb|EOY31010.1| RNA polymerase II
transcription mediators isoform 1 [Theobroma cacao]
Length = 663
Score = 68.9 bits (167), Expect = 6e-10
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 31/110 (28%)
Frame = -3
Query: 239 LSHPPWHSRTSSW------------------------------SQLHTKIVVKDDQVTVS 150
++HP WHSRTSSW SQ TK+VV DD++ V
Sbjct: 458 MTHPTWHSRTSSWTIFMKVPQSILHVESQSQKSDFQNMKDAIKSQFRTKVVVNDDRINVE 517
Query: 149 GEGAPSTLCSF-RISPNVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
GEGAP+ + F R S ++ SV+ Y+C +A ++IRWLH+E
Sbjct: 518 GEGAPNVVGLFKRSSEDICSVNKYDCDLADLPVIILQQVASQVIRWLHEE 567
>ref|XP_004300164.1| PREDICTED: mediator of RNA polymerase II transcription subunit
17-like [Fragaria vesca subsp. vesca]
Length = 655
Score = 68.2 bits (165), Expect = 1e-09
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 30/108 (27%)
Frame = -3
Query: 236 SHPPWHSRTSSW-----------------------------SQLHTKIVVKDDQVTVSGE 144
SHP WHSRTSSW SQ HTK+VV DD + + GE
Sbjct: 453 SHPTWHSRTSSWTLVVKIPQSILHACQIRVSDSHHTKHVTKSQFHTKVVVTDDCINIDGE 512
Query: 143 GAPSTLCSFR-ISPNVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
GAP+ + F+ S V S++ Y+C +A ++IRWLH+E
Sbjct: 513 GAPNVVGLFKGTSQEVCSMNRYDCDLADLSVIILQQVASQVIRWLHEE 560
>gb|EMJ05807.1| hypothetical protein PRUPE_ppa002594mg [Prunus persica]
Length = 654
Score = 66.6 bits (161), Expect = 3e-09
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 30/109 (27%)
Frame = -3
Query: 239 LSHPPWHSRTSSW-----------------------------SQLHTKIVVKDDQVTVSG 147
LSHP WHSRTSSW SQ HTK+VV DD + V G
Sbjct: 451 LSHPTWHSRTSSWMLFVKIPESILHACQTRTSDMRHMRNITKSQFHTKVVVTDDCINVEG 510
Query: 146 EGAPSTLCSFR-ISPNVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
EGAP+ + F+ S + ++ Y+C +A ++IRWLH+E
Sbjct: 511 EGAPNVVGLFKGNSEEICLMNRYDCDLADLPVIILQQVASQVIRWLHEE 559
>ref|XP_002285089.1| PREDICTED: uncharacterized protein LOC100266409 [Vitis vinifera]
gi|147821405|emb|CAN63500.1| hypothetical protein
VITISV_011675 [Vitis vinifera]
gi|297738929|emb|CBI28174.3| unnamed protein product
[Vitis vinifera]
Length = 660
Score = 63.2 bits (152), Expect = 4e-08
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 31/110 (28%)
Frame = -3
Query: 239 LSHPPWHSRTSSWSQL------------------------------HTKIVVKDDQVTVS 150
LSHP WHSRTSSW+ L TK+V+ DD + V
Sbjct: 455 LSHPTWHSRTSSWTLLMKVPESSFHPGCQTRTSDIHNVKNIIKTHFRTKVVINDDCINVE 514
Query: 149 GEGAPSTLCSFR-ISPNVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
G+GAP+ + F+ S +V S++ Y+C +A ++IRWLH+E
Sbjct: 515 GDGAPNVVGLFKGSSEDVCSMNRYDCDLADIPVILLQQVASQVIRWLHEE 564
>ref|XP_006475818.1| PREDICTED: mediator of RNA polymerase II transcription subunit
17-like [Citrus sinensis]
Length = 657
Score = 62.8 bits (151), Expect = 5e-08
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 25/104 (24%)
Frame = -3
Query: 239 LSHPPWHSRTSSW------------------------SQLHTKIVVKDDQVTVSGEGAPS 132
+SHP WHSRTSSW S T +VV DD + V GEG P+
Sbjct: 459 VSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPN 518
Query: 131 TLCSFR-ISPNVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
+ F+ S ++SS++ Y+C +A ++IRWLH+E
Sbjct: 519 VVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEE 562
>ref|XP_006450970.1| hypothetical protein CICLE_v10007689mg [Citrus clementina]
gi|557554196|gb|ESR64210.1| hypothetical protein
CICLE_v10007689mg [Citrus clementina]
Length = 657
Score = 62.0 bits (149), Expect = 8e-08
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 25/104 (24%)
Frame = -3
Query: 239 LSHPPWHSRTSSW------------------------SQLHTKIVVKDDQVTVSGEGAPS 132
+SHP WHSRTSSW S T +VV DD + V GEG P+
Sbjct: 459 VSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPN 518
Query: 131 TLCSFR-ISPNVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
+ F S ++SS++ Y+C +A ++IRWLH+E
Sbjct: 519 VVGLFEGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEE 562
>ref|XP_004251571.1| PREDICTED: mediator of RNA polymerase II transcription subunit
17-like [Solanum lycopersicum]
Length = 663
Score = 61.6 bits (148), Expect = 1e-07
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 28/107 (26%)
Frame = -3
Query: 239 LSHPPWHSRTSSW--------SQLH-------------------TKIVVKDDQVTVSGEG 141
+SHP WHSRTSSW S LH TK++V+DD +++ GEG
Sbjct: 462 ISHPTWHSRTSSWTLSMDVPESILHAGSLSHSSDYVKNVKFHFRTKVMVRDDCISLEGEG 521
Query: 140 APSTLCSFRISP-NVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
AP+ + F+ P ++ ++ Y+C +A ++IRWLH+E
Sbjct: 522 APNIVGLFKGKPDSICPMNRYDCDLSDLPMVLLQQVASQVIRWLHEE 568
>ref|XP_006364902.1| PREDICTED: mediator of RNA polymerase II transcription subunit
17-like [Solanum tuberosum]
Length = 663
Score = 60.8 bits (146), Expect = 2e-07
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 28/107 (26%)
Frame = -3
Query: 239 LSHPPWHSRTSSW--------SQLH-------------------TKIVVKDDQVTVSGEG 141
+SHP WHSRTSSW S LH TK++V+DD +++ GEG
Sbjct: 462 ISHPTWHSRTSSWTLSMDVPESILHAGSLSHSSDYVKNVKFHFRTKVMVRDDCISLEGEG 521
Query: 140 APSTLCSFRISP-NVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
AP+ + F+ P + ++ Y+C +A ++IRWLH+E
Sbjct: 522 APNVVGLFKGKPDSTCPMNRYDCDLSDLPMVLLQQVASQVIRWLHEE 568
>ref|XP_006842865.1| hypothetical protein AMTR_s00081p00160620 [Amborella trichopoda]
gi|548845021|gb|ERN04540.1| hypothetical protein
AMTR_s00081p00160620 [Amborella trichopoda]
Length = 668
Score = 58.9 bits (141), Expect = 7e-07
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 29/108 (26%)
Frame = -3
Query: 239 LSHPPWHSRTSSWS----------------------------QLHTKIVVKDDQVTVSGE 144
LSHP W+SR S+WS Q +TK+VV D+ + + GE
Sbjct: 467 LSHPTWNSRISAWSLYMKVPQSIMHLGKTKPETFDLEKGIRSQFYTKVVVNDESICIEGE 526
Query: 143 GAPSTLCSFRI-SPNVSSVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
APS + FR S V S+S Y C +A +++ W+H+E
Sbjct: 527 AAPSVVGLFRSDSVEVRSISGYHCGLEDLTPMLLQQVASQVVHWIHEE 574
>gb|AFW79767.1| hypothetical protein ZEAMMB73_523859 [Zea mays]
Length = 300
Score = 58.5 bits (140), Expect = 9e-07
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 31/109 (28%)
Frame = -3
Query: 236 SHPPWHSRTSSWS------------------------------QLHTKIVVKDDQVTVSG 147
S P WHSRTSSWS Q TK+++KD Q+++ G
Sbjct: 96 SLPTWHSRTSSWSLCLKVPQPILATGRVTKPSDYHELKYKSRSQFSTKVILKDGQISLMG 155
Query: 146 EGAPSTLCSFRISPNVSS-VSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
EG+PS + S P+ S ++SY C +A ++I WLHDE
Sbjct: 156 EGSPSIVGSLTGKPSDSRLINSYNCDLEDLPMMLLQQVASQVIHWLHDE 204
>ref|NP_001145828.1| uncharacterized protein LOC100279335 [Zea mays]
gi|194704804|gb|ACF86486.1| unknown [Zea mays]
gi|219884585|gb|ACL52667.1| unknown [Zea mays]
gi|413947117|gb|AFW79766.1| hypothetical protein
ZEAMMB73_523859 [Zea mays]
Length = 661
Score = 58.5 bits (140), Expect = 9e-07
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 31/109 (28%)
Frame = -3
Query: 236 SHPPWHSRTSSWS------------------------------QLHTKIVVKDDQVTVSG 147
S P WHSRTSSWS Q TK+++KD Q+++ G
Sbjct: 457 SLPTWHSRTSSWSLCLKVPQPILATGRVTKPSDYHELKYKSRSQFSTKVILKDGQISLMG 516
Query: 146 EGAPSTLCSFRISPNVSS-VSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
EG+PS + S P+ S ++SY C +A ++I WLHDE
Sbjct: 517 EGSPSIVGSLTGKPSDSRLINSYNCDLEDLPMMLLQQVASQVIHWLHDE 565
>ref|NP_001067381.1| Os12g0638600 [Oryza sativa Japonica Group]
gi|77556810|gb|ABA99606.1| expressed protein [Oryza
sativa Japonica Group] gi|113649888|dbj|BAF30400.1|
Os12g0638600 [Oryza sativa Japonica Group]
gi|215694565|dbj|BAG89558.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218187319|gb|EEC69746.1| hypothetical protein
OsI_39278 [Oryza sativa Indica Group]
Length = 655
Score = 57.0 bits (136), Expect = 3e-06
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 31/109 (28%)
Frame = -3
Query: 236 SHPPWHSRTSSWS------------------------------QLHTKIVVKDDQVTVSG 147
S P WHSRTSSWS Q +TK++VKD Q+++ G
Sbjct: 454 SLPTWHSRTSSWSLCLKVPQPILAADRIAKPSDNHELKYKSRSQFNTKVIVKDSQISLMG 513
Query: 146 EGAPSTLCSFRISPNVS-SVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
EG+PS S P+ V+SY C +A ++I WLH+E
Sbjct: 514 EGSPSIAGSLTGKPSDGYLVNSYNCDLEDLPTMLLQQVASQVIHWLHEE 562
>gb|EEE53678.1| hypothetical protein OsJ_37013 [Oryza sativa Japonica Group]
Length = 655
Score = 57.0 bits (136), Expect = 3e-06
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 31/109 (28%)
Frame = -3
Query: 236 SHPPWHSRTSSWS------------------------------QLHTKIVVKDDQVTVSG 147
S P WHSRTSSWS Q +TK++VKD Q+++ G
Sbjct: 454 SLPTWHSRTSSWSLCLKVPQPILAADRIAKPSDNHELKYKSRSQFNTKVIVKDSQISLMG 513
Query: 146 EGAPSTLCSFRISPNVS-SVSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
EG+PS S P+ V+SY C +A ++I WLH+E
Sbjct: 514 EGSPSIAGSLTGKPSDGYLVNSYNCDLEDLPTMLLQQVASQVIHWLHEE 562
>ref|XP_002457523.1| hypothetical protein SORBIDRAFT_03g008700 [Sorghum bicolor]
gi|241929498|gb|EES02643.1| hypothetical protein
SORBIDRAFT_03g008700 [Sorghum bicolor]
Length = 659
Score = 56.2 bits (134), Expect = 4e-06
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 31/109 (28%)
Frame = -3
Query: 236 SHPPWHSRTSSWS------------------------------QLHTKIVVKDDQVTVSG 147
S P WHSRTSSWS Q TK+++KD Q+++ G
Sbjct: 458 SLPTWHSRTSSWSLCLKVPQPILATDRVRKPSDHHKLKYKSRSQFSTKVILKDGQISLMG 517
Query: 146 EGAPSTLCSFRISPNVSS-VSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
EG+PS S P+ ++SY C +A ++I WLHDE
Sbjct: 518 EGSPSIAGSLTGKPSDGRLINSYNCDLEDLPMMLLQQVASQVIHWLHDE 566
>gb|ACN26952.1| unknown [Zea mays] gi|413926580|gb|AFW66512.1| hypothetical protein
ZEAMMB73_010825 [Zea mays] gi|413926581|gb|AFW66513.1|
hypothetical protein ZEAMMB73_010825 [Zea mays]
Length = 660
Score = 56.2 bits (134), Expect = 4e-06
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 31/109 (28%)
Frame = -3
Query: 236 SHPPWHSRTSSWS------------------------------QLHTKIVVKDDQVTVSG 147
S P WHSRTSSWS Q TK+++KD Q+++ G
Sbjct: 458 SLPTWHSRTSSWSLCLKVPQPILATDRVRRPSDYSELKCKSRSQFGTKVILKDGQISLMG 517
Query: 146 EGAPSTLCSFRISPNVSS-VSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
EG+PS S P+ V+SY C +A ++I WLHDE
Sbjct: 518 EGSPSIAGSLAGKPSDGRLVNSYNCDLEDLPMMLLQQVASQVIHWLHDE 566
>gb|EOY31014.1| RNA polymerase II transcription mediators isoform 6, partial
[Theobroma cacao]
Length = 527
Score = 55.8 bits (133), Expect = 6e-06
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 31/86 (36%)
Frame = -3
Query: 239 LSHPPWHSRTSSW------------------------------SQLHTKIVVKDDQVTVS 150
++HP WHSRTSSW SQ TK+VV DD++ V
Sbjct: 417 MTHPTWHSRTSSWTIFMKVPQSILHVESQSQKSDFQNMKDAIKSQFRTKVVVNDDRINVE 476
Query: 149 GEGAPSTLCSF-RISPNVSSVSSYEC 75
GEGAP+ + F R S ++ SV+ Y+C
Sbjct: 477 GEGAPNVVGLFKRSSEDICSVNKYDC 502
>ref|XP_004967947.1| PREDICTED: mediator of RNA polymerase II transcription subunit
17-like [Setaria italica]
Length = 661
Score = 55.5 bits (132), Expect = 7e-06
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 31/109 (28%)
Frame = -3
Query: 236 SHPPWHSRTSSWS------------------------------QLHTKIVVKDDQVTVSG 147
S P WHSRTSSWS Q +TK+++KD Q+++ G
Sbjct: 460 SLPTWHSRTSSWSLCLKVPQPILAADRITKPSDVHEPRYKSRSQFNTKVILKDGQISLMG 519
Query: 146 EGAPSTLCSFRISPNVSS-VSSYECXXXXXXXXXXXXIAGRIIRWLHDE 3
EG+PS S P+ ++SY C +A ++I WLH+E
Sbjct: 520 EGSPSIAGSLTGKPSDGRLINSYNCDLEDLPMMLLQQVASQVIHWLHEE 568