BLASTX nr result
ID: Zingiber24_contig00044062
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00044062
(488 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub... 165 5e-39
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab... 161 7e-38
ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I sub... 161 1e-37
gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza... 160 1e-37
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps... 159 5e-37
emb|CBI29879.3| unnamed protein product [Vitis vinifera] 159 5e-37
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub... 159 5e-37
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr... 157 1e-36
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr... 157 1e-36
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana... 157 1e-36
dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryz... 157 2e-36
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub... 156 3e-36
ref|XP_006381018.1| hypothetical protein POPTR_0006s05420g [Popu... 155 7e-36
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca... 155 7e-36
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca... 155 7e-36
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th... 155 7e-36
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th... 155 7e-36
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 155 7e-36
ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [A... 154 9e-36
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni... 153 3e-35
>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
italica]
Length = 1682
Score = 165 bits (418), Expect = 5e-39
Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 8/170 (4%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFIS--KNQKRSPHQ----- 328
L+DN+KVVL K + L K N +I LP L A +F+ K +K S +
Sbjct: 1068 LADNKKVVLDKIKGHKQNQLLSKPNGYITTLPKKLVAEAKEFLKLLKEKKSSDIKKGLMC 1127
Query: 327 -IXXXXXXXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGI 151
I KYL SL DPGE+VGV+AAQS+GEPSTQMTLNTFHLAG+G+MNVTLGI
Sbjct: 1128 DIKKKGLMKLLKVKYLYSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGI 1187
Query: 150 PRLQEILMTASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVEK 1
PRL+EILMTAS +I TP+M CPL T+DDA R++AKLRRV VAD+VEK
Sbjct: 1188 PRLKEILMTASANISTPIMVCPLLEKWTRDDARRVAAKLRRVRVADIVEK 1237
>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
Length = 1678
Score = 161 bits (408), Expect = 7e-38
Identities = 87/164 (53%), Positives = 115/164 (70%), Gaps = 3/164 (1%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFISK---NQKRSPHQIXXX 316
L+ NQ +VLQ+ ++ M L +N +I+ LP SLK GA F+ N++ + +
Sbjct: 1084 LAINQDMVLQRCSEDM----LSGANSYISDLPISLKNGAEKFVEAMPMNERIASKFVRQE 1139
Query: 315 XXXXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQE 136
K+ SLA PGE VGV+AAQSVGEPSTQMTLNTFHLAG+G+MNVTLGIPRLQE
Sbjct: 1140 ELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1199
Query: 135 ILMTASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
ILMTA+ DI+TP+M CPL KTK+DA ++ KLR++ VAD+++
Sbjct: 1200 ILMTAAADIKTPIMTCPLLKGKTKEDANDITGKLRKITVADIIK 1243
>ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
[Brachypodium distachyon]
Length = 1868
Score = 161 bits (407), Expect = 1e-37
Identities = 89/161 (55%), Positives = 111/161 (68%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFISKNQKRSPHQIXXXXXX 307
L+DN+K VL + D +SN +I +LP +L + AT F+SK++ R H I
Sbjct: 1272 LADNRKAVLDRLGRYTGDHMSLQSN-YITELPEALTDRATKFLSKDKGRCRHDIKEDELM 1330
Query: 306 XXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEILM 127
KYL SL DPGE+VGVI AQS+GEPSTQMTLNTFH AG+ D+NVTLG+PR+QEILM
Sbjct: 1331 NLLKAKYLASLVDPGEAVGVILAQSLGEPSTQMTLNTFHFAGRSDVNVTLGMPRIQEILM 1390
Query: 126 TASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
AS +I TP+M CPL T DDAERL+AKLR V + D+VE
Sbjct: 1391 KASANIATPVMMCPLLEDVTWDDAERLAAKLRGVRLVDIVE 1431
>gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
Length = 1830
Score = 160 bits (406), Expect = 1e-37
Identities = 92/188 (48%), Positives = 118/188 (62%), Gaps = 26/188 (13%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFISKNQKRSPHQIXXXXXX 307
LSDN++ VL K + L N +I++LP+ L E A F+ +N+K + I
Sbjct: 1130 LSDNRRAVLDKLDSHNDKHLLSNPNGYISELPAKLIENAMKFLKENEK-GRYDIREEELM 1188
Query: 306 XXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEILM 127
KYL+SL DPGE+VGV+AAQS+GEPSTQMTLNTFHLAG+G++NVTLGIPRL+EILM
Sbjct: 1189 KLLKVKYLSSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGRGELNVTLGIPRLKEILM 1248
Query: 126 TASKDIRTPLMNCPLHAWKT--------------------------KDDAERLSAKLRRV 25
TAS I TP M CPL KT ++DAER++AKLRRV
Sbjct: 1249 TASDKISTPFMKCPLIKTKTRFIPVVIYISLYTCFLHFSWSVEYDERNDAERIAAKLRRV 1308
Query: 24 YVADVVEK 1
+VADV+E+
Sbjct: 1309 HVADVLER 1316
>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
gi|482559195|gb|EOA23386.1| hypothetical protein
CARUB_v10016563mg [Capsella rubella]
Length = 1651
Score = 159 bits (401), Expect = 5e-37
Identities = 87/164 (53%), Positives = 115/164 (70%), Gaps = 3/164 (1%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFISK---NQKRSPHQIXXX 316
L+ NQ +VLQ+ ++ M L S+ +I+ LP SLK+ A F+ N++ + +
Sbjct: 1070 LTVNQDMVLQRCSEDM----LSGSSSYISDLPISLKKDAEKFVEAMPMNERIASKFVRQE 1125
Query: 315 XXXXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQE 136
KY SLA PGE VGV+AAQSVGEPSTQMTLNTFHLAG+G+MNVTLGIPRLQE
Sbjct: 1126 ELLKLVKSKYFESLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1185
Query: 135 ILMTASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
ILMTA+ DI+TP+M CPL KTK+DA ++ KLR++ VAD+++
Sbjct: 1186 ILMTAAADIKTPIMTCPLLKGKTKEDANDITDKLRKITVADIIK 1229
>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 159 bits (401), Expect = 5e-37
Identities = 87/164 (53%), Positives = 113/164 (68%), Gaps = 3/164 (1%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFIS---KNQKRSPHQIXXX 316
L+ N++VV +KF K N +I KLP L++ FI + ++ +
Sbjct: 1076 LAVNEEVVCEKFGQD------GKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQK 1129
Query: 315 XXXXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQE 136
KY++SLA PGE VGV+AAQSVGEPSTQMTLNTFHLAG+G++NVTLGIPRLQE
Sbjct: 1130 DFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQE 1189
Query: 135 ILMTASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
ILMTA+ DI+TP+M CPL ++KDDAERL+AKL++V VAD+ E
Sbjct: 1190 ILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITE 1233
>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
vinifera]
Length = 1740
Score = 159 bits (401), Expect = 5e-37
Identities = 87/164 (53%), Positives = 113/164 (68%), Gaps = 3/164 (1%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFIS---KNQKRSPHQIXXX 316
L+ N++VV +KF K N +I KLP L++ FI + ++ +
Sbjct: 1147 LAVNEEVVCEKFGQD------GKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQK 1200
Query: 315 XXXXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQE 136
KY++SLA PGE VGV+AAQSVGEPSTQMTLNTFHLAG+G++NVTLGIPRLQE
Sbjct: 1201 DFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQE 1260
Query: 135 ILMTASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
ILMTA+ DI+TP+M CPL ++KDDAERL+AKL++V VAD+ E
Sbjct: 1261 ILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITE 1304
>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
gi|557103957|gb|ESQ44311.1| hypothetical protein
EUTSA_v10005738mg [Eutrema salsugineum]
Length = 1697
Score = 157 bits (398), Expect = 1e-36
Identities = 84/164 (51%), Positives = 115/164 (70%), Gaps = 3/164 (1%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFISK---NQKRSPHQIXXX 316
L+ NQ ++LQ+ ++ M L S+ +I LP +LK GA F+ N++ + +
Sbjct: 1103 LTVNQDMILQRCSEDM----LSGSSSYITDLPITLKNGAEKFVEAMPMNERIASKLVRQE 1158
Query: 315 XXXXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQE 136
K+ SLA PGE VGV+AAQSVGEPSTQMTLNTFHLAG+G+MNVTLGIPRLQE
Sbjct: 1159 DLLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1218
Query: 135 ILMTASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
ILMTA+ +I+TP+M CPL KT DDA++++ KLR++ VAD+++
Sbjct: 1219 ILMTAAANIKTPIMTCPLLKGKTTDDAKKITDKLRKIAVADIIK 1262
>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
gi|557523327|gb|ESR34694.1| hypothetical protein
CICLE_v10004132mg [Citrus clementina]
Length = 1715
Score = 157 bits (397), Expect = 1e-36
Identities = 85/162 (52%), Positives = 116/162 (71%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFISKNQKRSPHQIXXXXXX 307
L+ NQ+++ +K + Q L+ SN +I +LP +LK+ A F K +++
Sbjct: 1116 LAANQEMIYKKCSGQ-----LDASNAYIMELPDALKDNAEKFADKFLS---NEMAKQDFL 1167
Query: 306 XXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEILM 127
K++ SLA PGE VG++AAQSVGEPSTQMTLNTFHLAG+G+MNVTLGIPRLQEIL
Sbjct: 1168 KLVKHKFVLSLAQPGEPVGLLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1227
Query: 126 TASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVEK 1
ASKDI+TP++ CPL KT+DDA+RL+ KL+++ VAD+V+K
Sbjct: 1228 IASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKK 1269
>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
190K chain-like protein [Arabidopsis thaliana]
gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
[Arabidopsis thaliana]
Length = 1670
Score = 157 bits (397), Expect = 1e-36
Identities = 85/164 (51%), Positives = 116/164 (70%), Gaps = 3/164 (1%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFISK---NQKRSPHQIXXX 316
L+ NQ +VLQK ++ M L ++ +I+ LP SLK+GA F+ N++ + +
Sbjct: 1082 LTINQDMVLQKCSEDM----LSGASSYISDLPISLKKGAEKFVEAMPMNERIASKFVRQE 1137
Query: 315 XXXXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQE 136
K+ SLA PGE VGV+AAQSVGEPSTQMTLNTFHLAG+G+MNVTLGIPRLQE
Sbjct: 1138 ELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1197
Query: 135 ILMTASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
ILMTA+ +I+TP+M CPL KTK+DA ++ +LR++ VAD+++
Sbjct: 1198 ILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIK 1241
>dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
Group]
Length = 1748
Score = 157 bits (396), Expect = 2e-36
Identities = 91/190 (47%), Positives = 117/190 (61%), Gaps = 28/190 (14%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFI-SKNQKRSPHQIXXXXX 310
LSDN++ +L K + L N +I++LP L E A +F+ SK ++ + I
Sbjct: 1128 LSDNRRALLGKLDSHNDKHLLLNPNGYISELPEKLIENAMEFLKSKRNEKGRYDIKEKEL 1187
Query: 309 XXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEIL 130
KY++SL DPGE+VGV+AAQS+GEPSTQMTLNTFHLAG+G+MNVTLGIPRL+E+L
Sbjct: 1188 MKLLKVKYISSLVDPGEAVGVVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLKELL 1247
Query: 129 MTASKDIRTPLMNCPL---HAW------------------------KTKDDAERLSAKLR 31
MTAS I TP M CPL W +T DDAER++AKLR
Sbjct: 1248 MTASAKISTPFMKCPLLEDKTWDDDEEEMDDKLKKARDAERLAAKLRTIDDAERIAAKLR 1307
Query: 30 RVYVADVVEK 1
RV VAD+VE+
Sbjct: 1308 RVRVADIVER 1317
>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
sinensis]
Length = 1715
Score = 156 bits (394), Expect = 3e-36
Identities = 84/162 (51%), Positives = 116/162 (71%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFISKNQKRSPHQIXXXXXX 307
L+ NQ+++ +K + Q L+ SN +I +LP +LK+ A F K +++
Sbjct: 1116 LAANQEMIYKKCSGQ-----LDASNAYIMELPDALKDNAEKFADKFLS---NEMAKQDFL 1167
Query: 306 XXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEILM 127
K++ SLA PGE VG++A+QSVGEPSTQMTLNTFHLAG+G+MNVTLGIPRLQEIL
Sbjct: 1168 KLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILT 1227
Query: 126 TASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVEK 1
ASKDI+TP++ CPL KT+DDA+RL+ KL+++ VAD+V+K
Sbjct: 1228 IASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKK 1269
>ref|XP_006381018.1| hypothetical protein POPTR_0006s05420g [Populus trichocarpa]
gi|550335519|gb|ERP58815.1| hypothetical protein
POPTR_0006s05420g [Populus trichocarpa]
Length = 1132
Score = 155 bits (391), Expect = 7e-36
Identities = 75/95 (78%), Positives = 86/95 (90%)
Frame = -3
Query: 288 YLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEILMTASKDI 109
+ TSLA PGE VGV+AAQSVGEPSTQMTLNTFHLAG+G+MNVTLGIPRLQEILMTAS DI
Sbjct: 573 FFTSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASADI 632
Query: 108 RTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
+TP+M CPLH +TK+DAERLS KL++V VAD+VE
Sbjct: 633 KTPIMTCPLHEGRTKEDAERLSDKLKKVTVADIVE 667
>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
Length = 1397
Score = 155 bits (391), Expect = 7e-36
Identities = 82/132 (62%), Positives = 99/132 (75%), Gaps = 1/132 (0%)
Frame = -3
Query: 396 LPSSLKEGATDFISKNQKRSPHQ-IXXXXXXXXXXXKYLTSLADPGESVGVIAAQSVGEP 220
LP L+ A FI + K+ HQ I K+L+SLA PGE VGV+AAQSVGEP
Sbjct: 822 LPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEP 881
Query: 219 STQMTLNTFHLAGKGDMNVTLGIPRLQEILMTASKDIRTPLMNCPLHAWKTKDDAERLSA 40
STQMTLNTFHLAG+G+MNVTLGIPRLQEILMTAS DIRTP+M CPLH KTK+DA L+
Sbjct: 882 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLAN 941
Query: 39 KLRRVYVADVVE 4
K++++ VAD++E
Sbjct: 942 KMKKITVADILE 953
>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
Length = 1400
Score = 155 bits (391), Expect = 7e-36
Identities = 82/132 (62%), Positives = 99/132 (75%), Gaps = 1/132 (0%)
Frame = -3
Query: 396 LPSSLKEGATDFISKNQKRSPHQ-IXXXXXXXXXXXKYLTSLADPGESVGVIAAQSVGEP 220
LP L+ A FI + K+ HQ I K+L+SLA PGE VGV+AAQSVGEP
Sbjct: 825 LPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEP 884
Query: 219 STQMTLNTFHLAGKGDMNVTLGIPRLQEILMTASKDIRTPLMNCPLHAWKTKDDAERLSA 40
STQMTLNTFHLAG+G+MNVTLGIPRLQEILMTAS DIRTP+M CPLH KTK+DA L+
Sbjct: 885 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLAN 944
Query: 39 KLRRVYVADVVE 4
K++++ VAD++E
Sbjct: 945 KMKKITVADILE 956
>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
Length = 1689
Score = 155 bits (391), Expect = 7e-36
Identities = 82/132 (62%), Positives = 99/132 (75%), Gaps = 1/132 (0%)
Frame = -3
Query: 396 LPSSLKEGATDFISKNQKRSPHQ-IXXXXXXXXXXXKYLTSLADPGESVGVIAAQSVGEP 220
LP L+ A FI + K+ HQ I K+L+SLA PGE VGV+AAQSVGEP
Sbjct: 1114 LPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEP 1173
Query: 219 STQMTLNTFHLAGKGDMNVTLGIPRLQEILMTASKDIRTPLMNCPLHAWKTKDDAERLSA 40
STQMTLNTFHLAG+G+MNVTLGIPRLQEILMTAS DIRTP+M CPLH KTK+DA L+
Sbjct: 1174 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLAN 1233
Query: 39 KLRRVYVADVVE 4
K++++ VAD++E
Sbjct: 1234 KMKKITVADILE 1245
>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
Length = 1665
Score = 155 bits (391), Expect = 7e-36
Identities = 82/132 (62%), Positives = 99/132 (75%), Gaps = 1/132 (0%)
Frame = -3
Query: 396 LPSSLKEGATDFISKNQKRSPHQ-IXXXXXXXXXXXKYLTSLADPGESVGVIAAQSVGEP 220
LP L+ A FI + K+ HQ I K+L+SLA PGE VGV+AAQSVGEP
Sbjct: 1117 LPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEP 1176
Query: 219 STQMTLNTFHLAGKGDMNVTLGIPRLQEILMTASKDIRTPLMNCPLHAWKTKDDAERLSA 40
STQMTLNTFHLAG+G+MNVTLGIPRLQEILMTAS DIRTP+M CPLH KTK+DA L+
Sbjct: 1177 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLAN 1236
Query: 39 KLRRVYVADVVE 4
K++++ VAD++E
Sbjct: 1237 KMKKITVADILE 1248
>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Cucumis sativus]
Length = 1652
Score = 155 bits (391), Expect = 7e-36
Identities = 85/162 (52%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKE-GATDFISKNQKRSPHQIXXXXX 310
L+ NQ ++ + + Q L K N+FIN+LPS+L+E G + S ++ + P +
Sbjct: 1059 LAANQDMLYENSHHQ-----LGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKEDF 1113
Query: 309 XXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQEIL 130
KYL+SLA PGE VGV+AAQS+GEPSTQMTLNTFH AG+G+MNVTLGIPRLQEIL
Sbjct: 1114 IRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEIL 1173
Query: 129 MTASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
MTAS+DI+TP+M CPL + D A+ L+ KL+++ VAD++E
Sbjct: 1174 MTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIE 1215
>ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [Amborella trichopoda]
gi|548853779|gb|ERN11762.1| hypothetical protein
AMTR_s00022p00245030 [Amborella trichopoda]
Length = 1600
Score = 154 bits (390), Expect = 9e-36
Identities = 89/165 (53%), Positives = 113/165 (68%), Gaps = 4/165 (2%)
Frame = -3
Query: 486 LSDNQKVVLQKFN-DQMVDATLEKSNIFINKLPSSLKEGATDFI---SKNQKRSPHQIXX 319
L+ N+K + + Q+ DA + + +I LP +L+E FI SK ++ S H
Sbjct: 989 LAANKKTLSARLGVHQLEDALPSEYDSYIKDLPDALEEKMNKFIEKLSKKKRDSLHLRKL 1048
Query: 318 XXXXXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQ 139
KY +SLA PGE+VGVIAAQS+GEPSTQMTLNTFH AG+G+MNVTLGIPRLQ
Sbjct: 1049 KHFRNLLKLKYFSSLAQPGEAVGVIAAQSIGEPSTQMTLNTFHFAGQGEMNVTLGIPRLQ 1108
Query: 138 EILMTASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
EIL A+KDIRTP+M CPL +T+DDAERL+AKL R+ ADV+E
Sbjct: 1109 EIL-GAAKDIRTPVMTCPLLKQRTRDDAERLAAKLSRIKFADVIE 1152
>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
polymerase I largest subunit, putative [Ricinus communis]
Length = 1686
Score = 153 bits (386), Expect = 3e-35
Identities = 87/164 (53%), Positives = 113/164 (68%), Gaps = 3/164 (1%)
Frame = -3
Query: 486 LSDNQKVVLQKFNDQMVDATLEKSNIFINKLPSSLKEGATDFI---SKNQKRSPHQIXXX 316
L+ NQ ++ ++ Q L N +I++LP +LKE A F+ S + + + +
Sbjct: 1076 LALNQDMIYKRSGGQ-----LGAFNSYISELPEALKEKADRFLDDFSIMGRIASNLVKRE 1130
Query: 315 XXXXXXXXKYLTSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGKGDMNVTLGIPRLQE 136
K+L SLA PGE VGV+AAQSVGEPSTQMTLNTFHLAG+G+MNVTLGIPRLQE
Sbjct: 1131 DLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1190
Query: 135 ILMTASKDIRTPLMNCPLHAWKTKDDAERLSAKLRRVYVADVVE 4
ILMTAS DI+TP+M CPL +T +DA+ L+ KLR+V VAD+VE
Sbjct: 1191 ILMTASIDIKTPIMTCPLQEGRTNEDADHLADKLRKVTVADIVE 1234