BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00043847
         (307 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Popu...    89   6e-16
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    87   3e-15
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...    87   3e-15
ref|XP_006659992.1| PREDICTED: DNA-directed RNA polymerase III s...    80   4e-13
ref|XP_006395054.1| hypothetical protein EUTSA_v10003751mg [Eutr...    79   5e-13
gb|EAZ42119.1| hypothetical protein OsJ_26678 [Oryza sativa Japo...    78   1e-12
gb|EAZ06297.1| hypothetical protein OsI_28532 [Oryza sativa Indi...    78   1e-12
emb|CBI17549.3| unnamed protein product [Vitis vinifera]               77   2e-12
ref|NP_199764.1| SIN-like protein [Arabidopsis thaliana] gi|1017...    77   3e-12
ref|XP_002863995.1| hypothetical protein ARALYDRAFT_495012 [Arab...    77   3e-12
gb|EOX91150.1| Transcription regulators,zinc ion binding, putati...    76   4e-12
gb|EOX91149.1| Transcription regulators,zinc ion binding, putati...    76   4e-12
gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theo...    76   4e-12
ref|XP_006279575.1| hypothetical protein CARUB_v10025904mg [Caps...    76   5e-12
ref|XP_003573633.1| PREDICTED: DNA-directed RNA polymerase III s...    74   2e-11
gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]        74   3e-11
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...    71   1e-10
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...    71   2e-10
ref|XP_004300617.1| PREDICTED: DNA-directed RNA polymerase III s...    70   3e-10
gb|AFW75283.1| hypothetical protein ZEAMMB73_918312 [Zea mays]         69   5e-10

>ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Populus trichocarpa]
           gi|550334731|gb|EEE90658.2| hypothetical protein
           POPTR_0007s12540g [Populus trichocarpa]
          Length = 667

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYL---NPKTKQNVQSAESSAKSD 137
           SS   P    YAVG+L GN+LHLNP+HAVVQLRPS+ YL   N K K+N  S E S  ++
Sbjct: 190 SSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPSMDYLSSGNSKGKKNATSGEDS--NE 247

Query: 136 INAVGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
              +GLP KQ K   +G+    +++E WI L+YH   S  + RY
Sbjct: 248 GKPLGLPKKQSKQMSSGNEQKPDVEESWIPLKYHGSKSDLSSRY 291


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 7/108 (6%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLN---PKTKQNVQSAESSAKS- 140
           SS + PL  SYAVG+L GN+LHLNPVHAVVQLRPS  +LN   PK K NV+ A+S  KS 
Sbjct: 200 SSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNSGGPKRKNNVR-ADSDVKSE 258

Query: 139 ---DINAVGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
              D+N+ G   KQ+K     +      +E WI L+Y+ ++S  + R+
Sbjct: 259 EHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRH 306


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Cucumis sativus]
          Length = 702

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 7/108 (6%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLN---PKTKQNVQSAESSAKS- 140
           SS + PL  SYAVG+L GN+LHLNPVHAVVQLRPS  +LN   PK K NV+ A+S  KS 
Sbjct: 200 SSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNSGGPKRKNNVR-ADSDVKSE 258

Query: 139 ---DINAVGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
              D+N+ G   KQ+K     +      +E WI L+Y+ ++S  + R+
Sbjct: 259 EHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLESDLSTRH 306


>ref|XP_006659992.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Oryza
           brachyantha]
          Length = 682

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 42/102 (41%), Positives = 56/102 (54%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQNVQSAESSAKSDINA 128
           SSSK   VA YAVG+L GN +HLN +  VVQLRPS+ ++N     + ++    A SD + 
Sbjct: 200 SSSKAADVADYAVGVLRGNLVHLNHIDVVVQLRPSMLHVNSGRSNSREALHGGANSDASG 259

Query: 127 VGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRYH 2
             +P  +       S D  E  EPWISL Y P  S+   +YH
Sbjct: 260 STMPSVKRNERLEDSKDCTEESEPWISLTYQPAGSNIASKYH 301


>ref|XP_006395054.1| hypothetical protein EUTSA_v10003751mg [Eutrema salsugineum]
           gi|557091693|gb|ESQ32340.1| hypothetical protein
           EUTSA_v10003751mg [Eutrema salsugineum]
          Length = 682

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 43/98 (43%), Positives = 58/98 (59%)
 Frame = -1

Query: 298 KTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQNVQSAESSAKSDINAVGL 119
           K P    YAVG+L+G++LHLNPVHAV QLRPS+ YL+ K K    + ES        VG 
Sbjct: 197 KQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMEYLSSKKKHAEATGES--------VGT 248

Query: 118 PIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
             +Q K  QA ++     +E W++L+YH + S F  RY
Sbjct: 249 SKRQNKGVQASTDQKPIPEENWVALKYHGLQSEFCSRY 286


>gb|EAZ42119.1| hypothetical protein OsJ_26678 [Oryza sativa Japonica Group]
          Length = 673

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 43/102 (42%), Positives = 57/102 (55%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQNVQSAESSAKSDINA 128
           SSSK   VA YAVG+L GN +HLN + AV+QLRPS+ ++N   + N + A   A SD + 
Sbjct: 194 SSSKAADVADYAVGVLRGNLVHLNHIDAVMQLRPSMLHVN-SGRSNARQAHGGASSDASG 252

Query: 127 VGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRYH 2
             +P  +       S D  E  EPWISL Y    S+   +YH
Sbjct: 253 STMPSVKRNEHSEDSKDYTEESEPWISLTYQQAGSNVARKYH 294


>gb|EAZ06297.1| hypothetical protein OsI_28532 [Oryza sativa Indica Group]
          Length = 673

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 43/102 (42%), Positives = 57/102 (55%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQNVQSAESSAKSDINA 128
           SSSK   VA YAVG+L GN +HLN + AV+QLRPS+ ++N   + N + A   A SD + 
Sbjct: 194 SSSKAADVADYAVGVLRGNLVHLNHIDAVMQLRPSMLHVN-SGRSNARQAHGGASSDASG 252

Query: 127 VGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRYH 2
             +P  +       S D  E  EPWISL Y    S+   +YH
Sbjct: 253 STMPSVKRNEHSEDSKDYTEESEPWISLTYQQAGSNVARKYH 294


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLN---PKTKQNVQSAESSA--- 146
           +S K P    Y VG+L GN+LHLNP+HAVVQLRPS+ YL+    K K NV    +SA   
Sbjct: 183 TSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKRKNNVTGDTNSAVKL 242

Query: 145 --KSDINAVGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
              ++  +VG   KQ K+         +  E W+ L+YH  +S F+ RY
Sbjct: 243 EVSNEEESVGSLKKQNKIMGILDEQNTDAAESWVPLKYHSSESDFSARY 291


>ref|NP_199764.1| SIN-like protein [Arabidopsis thaliana] gi|10177619|dbj|BAB10766.1|
           unnamed protein product [Arabidopsis thaliana]
           gi|332008443|gb|AED95826.1| SIN-like protein
           [Arabidopsis thaliana]
          Length = 689

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 46/100 (46%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
 Frame = -1

Query: 298 KTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYL-NPKTKQNVQSAESSAKSDINAVG 122
           K P    YAVG+L+G++LHLNPVHAV QLRPS+  L + K K+  +S E S       VG
Sbjct: 199 KQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMQSLSSDKKKKQEESTEES-------VG 251

Query: 121 LPIKQEKLGQAGSNDGGEI-DEPWISLEYHPIDSHFTDRY 5
              KQ K  Q  S D   I +E W+SL+YH + S +  RY
Sbjct: 252 TSKKQNKGVQQASTDQKPINEETWVSLKYHGLQSEYCSRY 291


>ref|XP_002863995.1| hypothetical protein ARALYDRAFT_495012 [Arabidopsis lyrata subsp.
           lyrata] gi|297309830|gb|EFH40254.1| hypothetical protein
           ARALYDRAFT_495012 [Arabidopsis lyrata subsp. lyrata]
          Length = 676

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
 Frame = -1

Query: 298 KTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYL--NPKTKQNVQSAESSAKSDINAV 125
           K P    YAVG+L+G++LHLNPVHAV QLRPS+ YL  N K KQ   + ES        V
Sbjct: 187 KQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMQYLSSNGKKKQEESTEES--------V 238

Query: 124 GLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
           G   KQ K  QA ++     +E W++L+YH + S +   Y
Sbjct: 239 GTSKKQNKGVQASTDQKPINEETWVALKYHGLQSEYCSTY 278


>gb|EOX91150.1| Transcription regulators,zinc ion binding, putative isoform 3
           [Theobroma cacao]
          Length = 736

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQNVQSAESSAK----- 143
           SS   P    YAVG+L G++LHLNP+HAVVQLRPS+ +L P   +   +A + A+     
Sbjct: 201 SSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLKPSVSKRKNAAAADAEVTVKV 260

Query: 142 ---SDINAVGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
              +D  A G   KQ K  Q+ +    +  E W+ L+YH   + F+ +Y
Sbjct: 261 EEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKYHSSKNDFSAQY 309


>gb|EOX91149.1| Transcription regulators,zinc ion binding, putative isoform 2
           [Theobroma cacao]
          Length = 588

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQNVQSAESSAK----- 143
           SS   P    YAVG+L G++LHLNP+HAVVQLRPS+ +L P   +   +A + A+     
Sbjct: 104 SSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLKPSVSKRKNAAAADAEVTVKV 163

Query: 142 ---SDINAVGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
              +D  A G   KQ K  Q+ +    +  E W+ L+YH   + F+ +Y
Sbjct: 164 EEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKYHSSKNDFSAQY 212


>gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
          Length = 700

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQNVQSAESSAK----- 143
           SS   P    YAVG+L G++LHLNP+HAVVQLRPS+ +L P   +   +A + A+     
Sbjct: 201 SSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLKPSVSKRKNAAAADAEVTVKV 260

Query: 142 ---SDINAVGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
              +D  A G   KQ K  Q+ +    +  E W+ L+YH   + F+ +Y
Sbjct: 261 EEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKYHSSKNDFSAQY 309


>ref|XP_006279575.1| hypothetical protein CARUB_v10025904mg [Capsella rubella]
           gi|482548279|gb|EOA12473.1| hypothetical protein
           CARUB_v10025904mg [Capsella rubella]
          Length = 800

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 42/98 (42%), Positives = 59/98 (60%)
 Frame = -1

Query: 298 KTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQNVQSAESSAKSDINAVGL 119
           K P    YAVG+L+G++LHLNPVHAV QLRPS+ YL+   K+  + AES+ +S     G 
Sbjct: 365 KQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMDYLSSDGKK--KKAESTEES----AGT 418

Query: 118 PIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
             KQ K  QA  +     ++ W++L YH + S +  RY
Sbjct: 419 SKKQNKGAQASMDQKPINEDNWVALNYHGLQSEYCSRY 456


>ref|XP_003573633.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Brachypodium distachyon]
          Length = 663

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 46/104 (44%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLN---PKTKQNVQSAESSAKSD 137
           SSS+   V+ YAVG+L+GN +HLN + AV+QLRPS+++LN     TKQ VQ  E++    
Sbjct: 185 SSSEAADVSDYAVGVLSGNLVHLNHIDAVMQLRPSMSHLNSVQSHTKQPVQQRETNGTPT 244

Query: 136 INAVGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
           + +    IK   L   GS D  E  EPWISL Y P  S    +Y
Sbjct: 245 VTS----IKSNGLSD-GSKDCIEESEPWISLAYEPAGSDAASKY 283


>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
          Length = 643

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQNVQSAESSAKSDINA 128
           SS K P+ A YAVG+L GN+LHLNP+HAVVQLRPS+ +  P++ +   +A S+ +   N 
Sbjct: 187 SSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRPSMQHYKPESSKRRTTASSNLED--NT 244

Query: 127 VGLPIKQEKLGQAGSNDGGEID------EPWISLEYHPIDSHFTDRY 5
            G  +    L + G   G  I+      E WI L YH   S  +  Y
Sbjct: 245 KGEEVTTGSLKKQGKPSGPVIEQNKDTREDWIPLNYHGARSDISMSY 291


>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
           vinifera]
          Length = 672

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLN---PKTKQNVQSAESSAKSD 137
           +S K P    Y VG+L GN+LHLNP+HAVVQLRPS+ YL+    K K NV    +S    
Sbjct: 183 TSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKRKNNVTGDTNS---- 238

Query: 136 INAVGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
             AV L +  E+      + G    + W+ L+YH  +S F+ RY
Sbjct: 239 --AVKLEVSNEE-----ESVGSLKKQSWVPLKYHSSESDFSARY 275


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 677

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 41/101 (40%), Positives = 56/101 (55%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQNVQSAESSAKSDINA 128
           +S   P V  YAVG+L GN+LHLNP+HAVVQLRPS+ ++N    +   SA  + +     
Sbjct: 196 TSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPSLEHVNSNDSKRKNSATLNPE----- 250

Query: 127 VGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
               +K E   + G   G    + WISL+YH   S F+ RY
Sbjct: 251 ----VKLEDSNE-GKPIGSSKKQCWISLKYHGSKSDFSSRY 286


>ref|XP_004300617.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Fragaria vesca subsp. vesca]
          Length = 685

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
 Frame = -1

Query: 277 YAVGMLNGNQLHLNPVHAVVQLRPSIAYLNPKTKQN----VQSAESSAKSDINAVGLPIK 110
           YAVG+L GN+LHLNPVHAVVQLRPS+ +L P   +        AE + K +  ++    K
Sbjct: 199 YAVGVLMGNKLHLNPVHAVVQLRPSLDHLKPGGSKRKGTATGDAEVAVKREEKSLAPSKK 258

Query: 109 QEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRY 5
           Q K  ++ + D    +E W+ L+YH  +S F+  Y
Sbjct: 259 QNKRVESSTED----EESWVPLQYHGSESDFSAGY 289


>gb|AFW75283.1| hypothetical protein ZEAMMB73_918312 [Zea mays]
          Length = 677

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
 Frame = -1

Query: 307 SSSKTPLVASYAVGMLNGNQLHLNPVHAVVQLRPSIAYL---NPKTKQNVQSAESSAKSD 137
           SSSK   V +YAVG+LNGN +HLN + AVVQ+RPS++++      T+Q  Q  E +  + 
Sbjct: 192 SSSKAVDVTNYAVGVLNGNLVHLNHIDAVVQMRPSMSHIISGRAHTRQASQPREMNGGAS 251

Query: 136 INAVGLPIKQEKLGQAGSNDGGEIDEPWISLEYHPIDSHFTDRYH 2
            +        E+     S D  E  EPWISL Y P  S+   +YH
Sbjct: 252 TSMDSSHKGNER--PEDSKDRAEDSEPWISLIYQPAGSNTATKYH 294