BLASTX nr result
ID: Zingiber24_contig00043805
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber24_contig00043805
(436 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|... 114 1e-44
ref|YP_002916057.1| polyprotein [Sweetpotato badnavirus B] gi|23... 96 9e-38
gb|ACZ02411.1| polyprotein [Sugarcane bacilliform virus] 104 2e-37
gb|AHA62444.1| ORF III polyprotein, partial [Banana streak KA vi... 103 2e-37
ref|YP_003208050.1| putative polyprotein [Pelargonium vein bandi... 109 3e-37
ref|NP_039820.1| polyprotein [Commelina yellow mottle virus] gi|... 111 4e-37
gb|ACZ02408.1| polyprotein [Sugarcane bacilliform virus] 102 4e-37
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]... 116 4e-24
ref|YP_002117531.1| ORF3 [Cycad leaf necrosis virus] gi|19439916... 110 1e-22
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus] 108 6e-22
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus] 108 6e-22
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus] 108 1e-21
gb|AER00538.1| ORF III [Citrus yellow mosaic virus] 107 1e-21
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus] 107 1e-21
ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16... 107 1e-21
gb|ACH86211.1| unknown [Citrus yellow mosaic virus] 106 4e-21
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus] 105 8e-21
ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|54035746... 104 1e-20
gb|AHA62446.1| ORF III polyprotein, partial [Banana streak UA vi... 103 2e-20
gb|AEP82794.1| ORF III polyprotein [Banana streak UA virus] 103 2e-20
>ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|gb|AEF56561.1|
polyprotein [Fig badnavirus 1]
Length = 1837
Score = 114 bits (286), Expect(3) = 1e-44
Identities = 51/83 (61%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP GDKRMN+QD LV QIKE +Q LPDL++PPEDCFII+ETDGC+ WG ICKWK
Sbjct: 1538 YAKTSPTGDKRMNAQDWKLVAQIKEEVQKLPDLELPPEDCFIILETDGCMTGWGGICKWK 1597
Query: 156 RSKFNSKATERICAYASGS-SPL 91
+ + + E++CAYASG SP+
Sbjct: 1598 PKRNDPRRMEKVCAYASGKFSPI 1620
Score = 57.0 bits (136), Expect(3) = 1e-44
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = -1
Query: 430 ELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK 326
EL K GMRSWL +LNYAR YIPNL +LLSPLYAK
Sbjct: 1506 ELKEKKGMRSWLGILNYARAYIPNLGRLLSPLYAK 1540
Score = 54.7 bits (130), Expect(3) = 1e-44
Identities = 28/35 (80%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
Frame = -1
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+FSPIKSTIDAE++AVMN+L+ LKIYYLD KELII
Sbjct: 1616 KFSPIKSTIDAEIHAVMNTLEKLKIYYLDKKELII 1650
>ref|YP_002916057.1| polyprotein [Sweetpotato badnavirus B] gi|237846580|gb|ACN56751.1|
polyprotein [Sweetpotato badnavirus B]
Length = 771
Score = 95.9 bits (237), Expect(3) = 9e-38
Identities = 41/78 (52%), Positives = 57/78 (73%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G+ R N+QD LV++IK IQ LP L++PP+DC I++E DGC+ WG ICKWK
Sbjct: 453 YGKTSPTGEIRFNAQDWKLVREIKRKIQQLPPLEIPPKDCCIVLEADGCMDGWGAICKWK 512
Query: 156 RSKFNSKATERICAYASG 103
+ ++ ++ ERI AYASG
Sbjct: 513 QFAYDPRSKERITAYASG 530
Score = 55.8 bits (133), Expect(3) = 9e-38
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = -1
Query: 433 KELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK 326
++LLTK G+RSWL +LNYAR +IPNL K+L PLY K
Sbjct: 420 EDLLTKKGLRSWLGILNYARQHIPNLGKMLGPLYGK 455
Score = 51.6 bits (122), Expect(3) = 9e-38
Identities = 21/34 (61%), Positives = 31/34 (91%)
Frame = -1
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLDKELII 2
+F PIKSTIDAE++A+MN+++A KIYYLDK+ ++
Sbjct: 531 KFQPIKSTIDAEIFAIMNAMEAFKIYYLDKKEMV 564
>gb|ACZ02411.1| polyprotein [Sugarcane bacilliform virus]
Length = 1837
Score = 104 bits (259), Expect(3) = 2e-37
Identities = 42/78 (53%), Positives = 61/78 (78%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y++ SP G+KRMNSQD +V+++KE + NLPDL++PPE ++IETDGC++ WG +CKWK
Sbjct: 1507 YSKTSPNGEKRMNSQDWKIVKEVKEIVANLPDLELPPEKAIMVIETDGCMEGWGGVCKWK 1566
Query: 156 RSKFNSKATERICAYASG 103
+ + +E+ICAYASG
Sbjct: 1567 DNSSQPRWSEKICAYASG 1584
Score = 49.3 bits (116), Expect(3) = 2e-37
Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = -1
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+F+PIKSTIDAE+ AV+NSL KIYYLD KEL+I
Sbjct: 1585 KFTPIKSTIDAEIQAVINSLDKFKIYYLDKKELVI 1619
Score = 48.9 bits (115), Expect(3) = 2e-37
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK 326
++EL G+R WL +LNYAR+YIP L K+L PLY+K
Sbjct: 1473 DEELKEVKGLRKWLGILNYARSYIPKLGKILGPLYSK 1509
>gb|AHA62444.1| ORF III polyprotein, partial [Banana streak KA virus]
Length = 413
Score = 103 bits (258), Expect(3) = 2e-37
Identities = 43/78 (55%), Positives = 60/78 (76%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y++ SP G+KRMNSQD +V+++KE + NLPDL++PPE +IIETDGC+ WG +CKWK
Sbjct: 245 YSKTSPNGEKRMNSQDWKIVKEVKEIVANLPDLELPPEKAIMIIETDGCMDGWGGVCKWK 304
Query: 156 RSKFNSKATERICAYASG 103
+ + +E+ICAYASG
Sbjct: 305 DNSSQPRWSEKICAYASG 322
Score = 49.3 bits (116), Expect(3) = 2e-37
Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = -1
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+F+PIKSTIDAE+ AV+NSL KIYYLD KEL+I
Sbjct: 323 KFTPIKSTIDAEIQAVINSLDKFKIYYLDKKELVI 357
Score = 48.9 bits (115), Expect(3) = 2e-37
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK 326
++EL G+R WL +LNYAR+YIP L K+L PLY+K
Sbjct: 211 DEELKEVKGLRKWLGILNYARSYIPKLGKILGPLYSK 247
>ref|YP_003208050.1| putative polyprotein [Pelargonium vein banding virus]
gi|258547408|gb|ACV74337.1| putative polyprotein
[Pelargonium vein banding virus]
Length = 1970
Score = 109 bits (272), Expect(3) = 3e-37
Identities = 44/82 (53%), Positives = 63/82 (76%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP GDKR+ +QD L++QIK +QNLPDLK+PP D +I++ETDGC++ WG +CKWK
Sbjct: 1653 YQKTSPHGDKRLKAQDYALIRQIKALVQNLPDLKIPPADSYIVLETDGCMEGWGGVCKWK 1712
Query: 156 RSKFNSKATERICAYASGSSPL 91
+K + K+ E++ AYASG P+
Sbjct: 1713 PNKHSPKSQEKVAAYASGKFPV 1734
Score = 50.1 bits (118), Expect(3) = 3e-37
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -1
Query: 433 KELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK 326
++L K G+R WL +LNYAR YIPNL LL PLY K
Sbjct: 1620 EQLKEKKGLRGWLGILNYARTYIPNLSTLLGPLYQK 1655
Score = 42.0 bits (97), Expect(3) = 3e-37
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -1
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLDKELI 5
+F +KSTIDAE++A M +L ALKI+YLD++ I
Sbjct: 1731 KFPVVKSTIDAEIHACMGTLSALKIHYLDRKEI 1763
>ref|NP_039820.1| polyprotein [Commelina yellow mottle virus]
gi|130594|sp|P19199.2|POL_COYMV RecName: Full=Polyprotein
P3; Includes: RecName: Full=Putative movement protein;
Short=MP; Includes: RecName: Full=Capsid protein;
AltName: Full=Coat protein; Short=CP; Includes: RecName:
Full=Protease; Short=PR; Includes: RecName: Full=Reverse
transcriptase; Short=RT; Includes: RecName:
Full=Ribonuclease H gi|59050|emb|CAA37110.1| unnamed
protein product [Commelina yellow mottle virus]
Length = 1886
Score = 111 bits (277), Expect(3) = 4e-37
Identities = 48/75 (64%), Positives = 62/75 (82%)
Frame = -2
Query: 324 SPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWKRSKF 145
+P GDKRMN + +V+QIKE ++NLPDL++PP+D FIIIETDGC+ WG +CKWK SK
Sbjct: 1673 APTGDKRMNPETWKMVRQIKEKVKNLPDLQLPPKDSFIIIETDGCMTGWGAVCKWKMSKH 1732
Query: 144 NSKATERICAYASGS 100
+ ++TERICAYASGS
Sbjct: 1733 DPRSTERICAYASGS 1747
Score = 45.4 bits (106), Expect(3) = 4e-37
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK 326
+++L T GMRSWL +L+YARNYI ++ KL+ PL K
Sbjct: 1635 DEKLATPEGMRSWLGILSYARNYIQDIGKLVQPLRQK 1671
Score = 44.3 bits (103), Expect(3) = 4e-37
Identities = 23/34 (67%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Frame = -1
Query: 100 FSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
F+PIKSTIDAE+ A ++ L KIYYLD KELII
Sbjct: 1748 FNPIKSTIDAEIQAAIHGLDKFKIYYLDKKELII 1781
>gb|ACZ02408.1| polyprotein [Sugarcane bacilliform virus]
Length = 1786
Score = 102 bits (255), Expect(3) = 4e-37
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y++ SP G++RMNSQD +V+++KE + NLPDL++PPE +IIETDGC+ WG +CKWK
Sbjct: 1508 YSKTSPNGERRMNSQDWKIVKEVKEIVANLPDLELPPEKAIMIIETDGCMDGWGGVCKWK 1567
Query: 156 RSKFNSKATERICAYASG 103
+ + +E+ICAYASG
Sbjct: 1568 DNSSQPRWSEKICAYASG 1585
Score = 49.3 bits (116), Expect(3) = 4e-37
Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = -1
Query: 103 QFSPIKSTIDAELYAVMNSLKALKIYYLD-KELII 2
+F+PIKSTIDAE+ AV+NSL KIYYLD KEL+I
Sbjct: 1586 KFTPIKSTIDAEIQAVINSLDKFKIYYLDKKELVI 1620
Score = 48.9 bits (115), Expect(3) = 4e-37
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK 326
++EL G+R WL +LNYAR+YIP L K+L PLY+K
Sbjct: 1474 DEELKEVKGLRKWLGILNYARSYIPKLGKILGPLYSK 1510
>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
bacilliform virus GD1]
Length = 1892
Score = 116 bits (290), Expect = 4e-24
Identities = 46/78 (58%), Positives = 66/78 (84%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP+G+K++N +D LV+QIKE +Q LPDL++PP++CFII+ETDGC++ WG +CKWK
Sbjct: 1596 YAKVSPKGEKKLNKEDWKLVRQIKEQVQQLPDLELPPQECFIILETDGCMEGWGGVCKWK 1655
Query: 156 RSKFNSKATERICAYASG 103
+ +++ K TERICAYASG
Sbjct: 1656 KKEYDPKNTERICAYASG 1673
Score = 72.8 bits (177), Expect = 4e-11
Identities = 53/142 (37%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDLSPTN*RS 260
+++L G+RS+L LLNYAR YIP + +LLSPLYAK PK W L
Sbjct: 1562 DEDLQETKGLRSFLGLLNYARAYIPQMGRLLSPLYAKVSPKGEKKLNKEDWKLVRQIKEQ 1621
Query: 259 NTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQWQFSPIKST 80
+ P + + G +KK+ + +F PIKST
Sbjct: 1622 VQQLPDLELPPQECFIILETDGCMEGWGGVCKWKKKEYDPKNTERICAYASGKFHPIKST 1681
Query: 79 IDAELYAVMNSLKALKIYYLDK 14
IDAE++AVMNSL+A KI+YLDK
Sbjct: 1682 IDAEIHAVMNSLEAFKIHYLDK 1703
>ref|YP_002117531.1| ORF3 [Cycad leaf necrosis virus] gi|194399161|gb|ACF60613.1| ORF3
[Cycad leaf necrosis virus]
Length = 1916
Score = 110 bits (276), Expect = 1e-22
Identities = 44/78 (56%), Positives = 64/78 (82%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y++ SP G+KRMN QD LV+++K+++QNLPD+++PP+ C I+IETDGC+ WG +CKWK
Sbjct: 1610 YSKVSPTGEKRMNHQDWALVKKVKDSVQNLPDMELPPKQCCIVIETDGCMDGWGGVCKWK 1669
Query: 156 RSKFNSKATERICAYASG 103
++ +SK TE+ CAYASG
Sbjct: 1670 LTRHDSKTTEKTCAYASG 1687
Score = 69.3 bits (168), Expect = 5e-10
Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 31/175 (17%)
Frame = -1
Query: 433 KELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAKEPKRR*THEFSRWDLSPTN*RSNT 254
+EL T G+R+WL +LNYAR+YIPNL K L PLY+K +SPT
Sbjct: 1577 EELQTTKGLRAWLGILNYARSYIPNLGKTLGPLYSK--------------VSPTG----- 1617
Query: 253 KPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHR------EDMCL------C 110
+R+ H W K + ++L + D C+ C
Sbjct: 1618 --------EKRMNH---QDWALVKKVKDSVQNLPDMELPPKQCCIVIETDGCMDGWGGVC 1666
Query: 109 QW-------------------QFSPIKSTIDAELYAVMNSLKALKIYYLDKELII 2
+W +FSP+KSTIDAE+ AV+ SL KI+YLDK+ ++
Sbjct: 1667 KWKLTRHDSKTTEKTCAYASGKFSPVKSTIDAEIQAVICSLDKFKIFYLDKQEVV 1721
>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
Length = 1979
Score = 108 bits (271), Expect = 6e-22
Identities = 43/78 (55%), Positives = 63/78 (80%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++RMN QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1659 YAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1718
Query: 156 RSKFNSKATERICAYASG 103
++++S+++E++CAYASG
Sbjct: 1719 LAQYDSRSSEKVCAYASG 1736
Score = 70.1 bits (170), Expect = 3e-10
Identities = 56/145 (38%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCL--LNYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDL-SPTN 269
NK+L G+RSWL L LNYARNYIP++ +LLSPLYAK P W L
Sbjct: 1623 NKQLEEVKGLRSWLGLGLLNYARNYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIR 1682
Query: 268 *RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQWQFSPI 89
+ PA P + + + G + Q S + +F+P
Sbjct: 1683 AQVQNLPALELPPADCFIIIETDGCM-DGWGGVCKWKLAQYDSRSSEKVCAYASGKFNPP 1741
Query: 88 KSTIDAELYAVMNSLKALKIYYLDK 14
KSTID E++AVMNSL KIYYLDK
Sbjct: 1742 KSTIDVEIHAVMNSLNNFKIYYLDK 1766
>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
Length = 1976
Score = 108 bits (271), Expect = 6e-22
Identities = 43/78 (55%), Positives = 63/78 (80%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++RMN QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1656 YAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1715
Query: 156 RSKFNSKATERICAYASG 103
++++S+++E++CAYASG
Sbjct: 1716 LAQYDSRSSEKVCAYASG 1733
Score = 68.6 bits (166), Expect = 8e-10
Identities = 56/144 (38%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLL-NYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDL-SPTN* 266
NK+L G+RSWL LL NYAR+YIP++ +LLSPLYAK P W L
Sbjct: 1621 NKQLEEVKGLRSWLGLLINYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRA 1680
Query: 265 RSNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQWQFSPIK 86
+ PA P + + + G + Q S + +F+P K
Sbjct: 1681 QVQNLPALELPPADCFIIIETDGCM-DGWGGVCKWKLAQYDSRSSEKVCAYASGKFNPPK 1739
Query: 85 STIDAELYAVMNSLKALKIYYLDK 14
STIDAE+ AVMNSL KIYYLDK
Sbjct: 1740 STIDAEIRAVMNSLNNFKIYYLDK 1763
>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
Length = 1967
Score = 108 bits (269), Expect = 1e-21
Identities = 43/78 (55%), Positives = 62/78 (79%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++RMN QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1647 YAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1706
Query: 156 RSKFNSKATERICAYASG 103
++++ +++ER+CAYASG
Sbjct: 1707 LAQYDPRSSERVCAYASG 1724
Score = 73.9 bits (180), Expect = 2e-11
Identities = 56/143 (39%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDL-SPTN*R 263
NK+L G+RSWL LLNYAR+YIP++ +LLSPLYAK P W L +
Sbjct: 1613 NKQLEEVKGLRSWLGLLNYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQ 1672
Query: 262 SNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQWQFSPIKS 83
PA P + + + G + Q S +F+P KS
Sbjct: 1673 VQNLPALELPPADCFIIIETDGCM-DGWGGVCKWKLAQYDPRSSERVCAYASGKFNPPKS 1731
Query: 82 TIDAELYAVMNSLKALKIYYLDK 14
TIDAE++AVMNSL KIYYLDK
Sbjct: 1732 TIDAEIHAVMNSLNNFKIYYLDK 1754
>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
Length = 1982
Score = 107 bits (268), Expect = 1e-21
Identities = 43/78 (55%), Positives = 62/78 (79%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++RMN QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1662 YAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1721
Query: 156 RSKFNSKATERICAYASG 103
++++ +++ER+CAYASG
Sbjct: 1722 VAQYDPRSSERVCAYASG 1739
Score = 74.7 bits (182), Expect = 1e-11
Identities = 58/146 (39%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDL-SPTN*R 263
NK+L G+RSWL LLNYAR+YIP++ +LLSPLYAK P W L +
Sbjct: 1628 NKQLEEVKGLRSWLGLLNYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQ 1687
Query: 262 SNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQW---QFSP 92
PA P + + + G + K +V R +C + +F+P
Sbjct: 1688 VQNLPALELPPADCFIIIETDGCMDGWGG----VCKWKVAQYDPRSSERVCAYASGKFNP 1743
Query: 91 IKSTIDAELYAVMNSLKALKIYYLDK 14
KSTIDAE++AVMNSL KIYYLDK
Sbjct: 1744 PKSTIDAEIHAVMNSLNNFKIYYLDK 1769
>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
Length = 1968
Score = 107 bits (268), Expect = 1e-21
Identities = 43/78 (55%), Positives = 62/78 (79%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++RMN QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1648 YAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1707
Query: 156 RSKFNSKATERICAYASG 103
++++ +++ER+CAYASG
Sbjct: 1708 IAQYDPRSSERVCAYASG 1725
Score = 74.3 bits (181), Expect = 2e-11
Identities = 57/146 (39%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDL-SPTN*R 263
NK+L G+RSWL LLNYAR+YIP++ +LLSPLYAK P W L +
Sbjct: 1614 NKQLEEVKGLRSWLGLLNYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQ 1673
Query: 262 SNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQW---QFSP 92
PA P + + + G + K ++ R +C + +F+P
Sbjct: 1674 VQNLPALELPPADCFIIIETDGCMDGWGG----VCKWKIAQYDPRSSERVCAYASGKFNP 1729
Query: 91 IKSTIDAELYAVMNSLKALKIYYLDK 14
KSTIDAE++AVMNSL KIYYLDK
Sbjct: 1730 PKSTIDAEIHAVMNSLNNFKIYYLDK 1755
>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
yellow mosaic virus]
Length = 1983
Score = 107 bits (268), Expect = 1e-21
Identities = 43/78 (55%), Positives = 62/78 (79%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++RMN QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1663 YAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1722
Query: 156 RSKFNSKATERICAYASG 103
++++ +++ER+CAYASG
Sbjct: 1723 VAQYDPRSSERVCAYASG 1740
Score = 74.7 bits (182), Expect = 1e-11
Identities = 58/146 (39%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDL-SPTN*R 263
NK+L G+RSWL LLNYAR+YIP++ +LLSPLYAK P W L +
Sbjct: 1629 NKQLEEVKGLRSWLGLLNYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQ 1688
Query: 262 SNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQW---QFSP 92
PA P + + + G + K +V R +C + +F+P
Sbjct: 1689 VQNLPALELPPADCFIIIETDGCMDGWGG----VCKWKVAQYDPRSSERVCAYASGKFNP 1744
Query: 91 IKSTIDAELYAVMNSLKALKIYYLDK 14
KSTIDAE++AVMNSL KIYYLDK
Sbjct: 1745 PKSTIDAEIHAVMNSLNNFKIYYLDK 1770
>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
Length = 1490
Score = 106 bits (264), Expect = 4e-21
Identities = 42/78 (53%), Positives = 62/78 (79%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G++R+N QD L+ +I+ +QNLP L++PP DCFIIIETDGC+ WG +CKWK
Sbjct: 1170 YAKVSPTGERRVNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGVCKWK 1229
Query: 156 RSKFNSKATERICAYASG 103
++++ +++ER+CAYASG
Sbjct: 1230 IAQYDPRSSERVCAYASG 1247
Score = 75.1 bits (183), Expect = 9e-12
Identities = 57/146 (39%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDL-SPTN*R 263
NK+L G+RSWL LLNYAR+YIP++ +LLSPLYAK P W L +
Sbjct: 1136 NKQLEEVKGLRSWLGLLNYARSYIPHMGRLLSPLYAKVSPTGERRVNRQDWALIDKIRAQ 1195
Query: 262 SNTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQW---QFSP 92
PA P + + + G + K ++ R +C + +F+P
Sbjct: 1196 VQNLPALELPPADCFIIIETDGCMDGWGG----VCKWKIAQYDPRSSERVCAYASGKFNP 1251
Query: 91 IKSTIDAELYAVMNSLKALKIYYLDK 14
KSTIDAE++AVMNSL + KIYYLDK
Sbjct: 1252 PKSTIDAEIHAVMNSLNSFKIYYLDK 1277
>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
Length = 1839
Score = 105 bits (261), Expect = 8e-21
Identities = 44/78 (56%), Positives = 60/78 (76%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G+KR N QD L+++IK+ +Q LPDL +PP C IIIE+DGC++ WG +CKWK
Sbjct: 1553 YAKTSPTGEKRFNRQDWHLIKEIKDMVQKLPDLAIPPARCCIIIESDGCMEGWGAVCKWK 1612
Query: 156 RSKFNSKATERICAYASG 103
+K +S+ TE+ICAYASG
Sbjct: 1613 LAKEDSRTTEKICAYASG 1630
Score = 65.9 bits (159), Expect = 5e-09
Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDLSPTN*RS 260
N EL T G+RS+L LLNYAR YIPNL + LSPLYAK P W L
Sbjct: 1519 NMELETTKGLRSFLGLLNYARIYIPNLGRKLSPLYAKTSPTGEKRFNRQDWHLIKEIKDM 1578
Query: 259 NTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQWQFSPIKST 80
K P R + + G + + + + +F +KST
Sbjct: 1579 VQKLPDLAIPPARCCIIIESDGCMEGWGAVCKWKLAKEDSRTTEKICAYASGKFGVVKST 1638
Query: 79 IDAELYAVMNSLKALKIYYLDKELII 2
IDAE+YA++ +L++ KI+YLDK+ ++
Sbjct: 1639 IDAEIYALIKALESFKIFYLDKKHLV 1664
>ref|YP_008567619.1| ORF3 [Piper yellow mottle virus] gi|540357465|gb|AGV08293.1| ORF3
[Piper yellow mottle virus]
Length = 1925
Score = 104 bits (260), Expect = 1e-20
Identities = 44/78 (56%), Positives = 58/78 (74%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y + SP G+++MN QD +V QIK+ IQ LP+L++PPEDC I+IETDGC+ WG +CKWK
Sbjct: 1654 YAKVSPTGERKMNQQDWGIVAQIKKIIQELPELELPPEDCCIVIETDGCMSGWGGVCKWK 1713
Query: 156 RSKFNSKATERICAYASG 103
+ K TER+CAY SG
Sbjct: 1714 PMACDPKNTERVCAYCSG 1731
Score = 73.6 bits (179), Expect = 3e-11
Identities = 58/172 (33%), Positives = 75/172 (43%), Gaps = 33/172 (19%)
Frame = -1
Query: 418 KHGMRSWLCLLNYARNYIPNLDKLLSPLYAKEPKRR*THEFSRWDLSPTN*RSNTKPARP 239
K +RSWL +LNYAR YIPNL ++L PLYAK +SPT R +
Sbjct: 1626 KKNLRSWLGILNYARAYIPNLGRILGPLYAK--------------VSPTGERKMNQ---- 1667
Query: 238 *GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCL--------------CQW- 104
W + + E +++L ED C+ C+W
Sbjct: 1668 ------------QDWGIVAQIKKIIQELPELEL--PPEDCCIVIETDGCMSGWGGVCKWK 1713
Query: 103 ------------------QFSPIKSTIDAELYAVMNSLKALKIYYLDKELII 2
+F P KSTIDAE++AVMNSL+ LKIYYLDK II
Sbjct: 1714 PMACDPKNTERVCAYCSGKFDPPKSTIDAEIHAVMNSLEKLKIYYLDKREII 1765
>gb|AHA62446.1| ORF III polyprotein, partial [Banana streak UA virus]
Length = 411
Score = 103 bits (258), Expect = 2e-20
Identities = 41/78 (52%), Positives = 62/78 (79%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y++ SP G++RMNSQD +V++IKE + NLPD+++PP++ +IIETDGC++ WG +CKWK
Sbjct: 243 YSKTSPNGERRMNSQDWAIVKKIKEQVLNLPDMELPPKEAVMIIETDGCMEGWGGVCKWK 302
Query: 156 RSKFNSKATERICAYASG 103
++ + ER+CAYASG
Sbjct: 303 KNTSQPRLEERVCAYASG 320
Score = 75.1 bits (183), Expect = 9e-12
Identities = 55/147 (37%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDLSPTN*RS 260
++EL G+R WL +LNYARNYIPNL K L PLY+K P W +
Sbjct: 209 DEELKEVRGLRKWLGILNYARNYIPNLGKTLGPLYSKTSPNGERRMNSQDWAIVKKIKEQ 268
Query: 259 NTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQWQFSPIKST 80
P + + + G +K Q +F+PIKST
Sbjct: 269 VLNLPDMELPPKEAVMIIETDGCMEGWGGVCKWKKNTSQPRLEERVCAYASGKFTPIKST 328
Query: 79 IDAELYAVMNSLKALKIYYLD-KELII 2
IDAE+ AV+NSL+ KIYYLD KELII
Sbjct: 329 IDAEVQAVINSLEKFKIYYLDKKELII 355
>gb|AEP82794.1| ORF III polyprotein [Banana streak UA virus]
Length = 411
Score = 103 bits (258), Expect = 2e-20
Identities = 41/78 (52%), Positives = 62/78 (79%)
Frame = -2
Query: 336 YTQKSPRGDKRMNSQDGTLVQQIKEAIQNLPDLKVPPEDCFIIIETDGCIKRWGDICKWK 157
Y++ SP G++RMNSQD +V++IKE + NLPD+++PP++ +IIETDGC++ WG +CKWK
Sbjct: 243 YSKTSPNGERRMNSQDWAIVRKIKEQVLNLPDMELPPKEAVMIIETDGCMEGWGGVCKWK 302
Query: 156 RSKFNSKATERICAYASG 103
++ + ER+CAYASG
Sbjct: 303 KNTSQPRLEERVCAYASG 320
Score = 74.7 bits (182), Expect = 1e-11
Identities = 55/147 (37%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Frame = -1
Query: 436 NKELLTKHGMRSWLCLLNYARNYIPNLDKLLSPLYAK-EPKRR*THEFSRWDLSPTN*RS 260
++EL G+R WL +LNYARNYIPNL K L PLY+K P W +
Sbjct: 209 DEELKEVRGLRKWLGILNYARNYIPNLGKTLGPLYSKTSPNGERRMNSQDWAIVRKIKEQ 268
Query: 259 NTKPARP*GPTRRLLHYY*NRWLYKKMGRHL*MEKKQVQL*SHREDMCLCQWQFSPIKST 80
P + + + G +K Q +F+PIKST
Sbjct: 269 VLNLPDMELPPKEAVMIIETDGCMEGWGGVCKWKKNTSQPRLEERVCAYASGKFTPIKST 328
Query: 79 IDAELYAVMNSLKALKIYYLD-KELII 2
IDAE+ AV+NSL+ KIYYLD KELII
Sbjct: 329 IDAEVQAVINSLEKFKIYYLDKKELII 355