BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00042845
         (917 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006653885.1| PREDICTED: general transcription factor IIH ...   401   e-109
gb|EEE61913.1| hypothetical protein OsJ_16644 [Oryza sativa Japo...   401   e-109
emb|CAE05735.1| OSJNBb0017I01.15 [Oryza sativa Japonica Group]        401   e-109
ref|XP_002447335.1| hypothetical protein SORBIDRAFT_06g033130 [S...   395   e-108
gb|EEC78260.1| hypothetical protein OsI_17944 [Oryza sativa Indi...   394   e-107
ref|XP_004972571.1| PREDICTED: general transcription factor IIH ...   392   e-106
tpg|DAA35322.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea m...   391   e-106
emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]   390   e-106
ref|XP_003580836.1| PREDICTED: general transcription factor IIH ...   386   e-105
ref|XP_002305144.1| transcription factor-related family protein ...   386   e-105
ref|XP_004134713.1| PREDICTED: general transcription factor IIH ...   384   e-104
ref|XP_003563288.1| PREDICTED: LOW QUALITY PROTEIN: general tran...   384   e-104
ref|XP_004505045.1| PREDICTED: general transcription factor IIH ...   380   e-103
ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun...   380   e-103
ref|XP_006467817.1| PREDICTED: general transcription factor IIH ...   380   e-103
ref|XP_006827784.1| hypothetical protein AMTR_s00009p00265760 [A...   379   e-103
ref|XP_004232855.1| PREDICTED: general transcription factor IIH ...   379   e-103
ref|XP_003601071.1| General transcription factor IIH subunit [Me...   379   e-102
dbj|BAJ91715.1| predicted protein [Hordeum vulgare subsp. vulgare]    378   e-102
ref|XP_003637396.1| General transcription factor IIH subunit [Me...   377   e-102

>ref|XP_006653885.1| PREDICTED: general transcription factor IIH subunit 4-like [Oryza
           brachyantha]
          Length = 451

 Score =  401 bits (1031), Expect = e-109
 Identities = 194/244 (79%), Positives = 225/244 (92%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS++E+RGVDPT+LIS LLELSFH+LG+AY+LNTLTDVQR AI+DL ELGLVK
Sbjct: 206 WYIMREYISSSEERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRK+ WFIPTKLATNLS S +DS+S+KEGFVVVETNFRMY+YSTSKL+ EILRLFSR
Sbjct: 266 LQQGRKDSWFIPTKLATNLSASLSDSSSSKEGFVVVETNFRMYAYSTSKLHCEILRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVG+IT+ESLY AFENGITAEQIISFLQQNAHPRVA+KIP VPENVTDQIRL
Sbjct: 326 VEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WETDRNR+EMT S+LYEDFPSK++FE  CD+AR+ G +L+ED+K MR+IV VE H +MR+
Sbjct: 386 WETDRNRVEMTLSHLYEDFPSKDMFEQCCDYARDHGCLLWEDAKKMRLIVRVEFHPEMRE 445

Query: 723 FLRR 734
           FLRR
Sbjct: 446 FLRR 449


>gb|EEE61913.1| hypothetical protein OsJ_16644 [Oryza sativa Japonica Group]
          Length = 427

 Score =  401 bits (1031), Expect = e-109
 Identities = 193/244 (79%), Positives = 225/244 (92%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS+AE+RGVDPT+LIS LLELSFH+LG+AY+LNTLTDVQR AI+DL ELGLVK
Sbjct: 182 WYIMREYISSAEERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVK 241

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRK+ WFIPTKLATNLS S +DS+SNKEGFVVVETNFRMY+YSTS+L+ EILRLFSR
Sbjct: 242 LQQGRKDSWFIPTKLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSRLHCEILRLFSR 301

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVG+IT+ESLY AFENGITAEQIISFLQQNAHPRVA+KIP VPENVTDQIRL
Sbjct: 302 VEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRL 361

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WETDRNR++MT S+LYEDFPSK++F+  CD+AR+ G +L+ED+K MR+IV VE H +MR+
Sbjct: 362 WETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMRE 421

Query: 723 FLRR 734
           FLRR
Sbjct: 422 FLRR 425


>emb|CAE05735.1| OSJNBb0017I01.15 [Oryza sativa Japonica Group]
          Length = 451

 Score =  401 bits (1031), Expect = e-109
 Identities = 193/244 (79%), Positives = 225/244 (92%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS+AE+RGVDPT+LIS LLELSFH+LG+AY+LNTLTDVQR AI+DL ELGLVK
Sbjct: 206 WYIMREYISSAEERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRK+ WFIPTKLATNLS S +DS+SNKEGFVVVETNFRMY+YSTS+L+ EILRLFSR
Sbjct: 266 LQQGRKDSWFIPTKLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSRLHCEILRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVG+IT+ESLY AFENGITAEQIISFLQQNAHPRVA+KIP VPENVTDQIRL
Sbjct: 326 VEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WETDRNR++MT S+LYEDFPSK++F+  CD+AR+ G +L+ED+K MR+IV VE H +MR+
Sbjct: 386 WETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMRE 445

Query: 723 FLRR 734
           FLRR
Sbjct: 446 FLRR 449


>ref|XP_002447335.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
           gi|241938518|gb|EES11663.1| hypothetical protein
           SORBIDRAFT_06g033130 [Sorghum bicolor]
          Length = 451

 Score =  395 bits (1016), Expect = e-108
 Identities = 193/244 (79%), Positives = 220/244 (90%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS+AE+RGVDPT+LIS LLELSFH LG AY+LNTLTDVQR AI+DL ELGLVK
Sbjct: 206 WYIMREYISSAEERGVDPTELISFLLELSFHKLGAAYSLNTLTDVQRIAIRDLAELGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
            Q GR + WFIPT+LATNLS S +DS+SNKEGFVVVETNFRMY+YSTSKL+ EILRLFSR
Sbjct: 266 QQQGRTDRWFIPTQLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSKLHCEILRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGA+T+ES+Y AFENGITAEQIISFL+QNAHPRVA+KIPTVPENVTDQIRL
Sbjct: 326 VEYQLPNLIVGAVTKESIYGAFENGITAEQIISFLRQNAHPRVADKIPTVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WETDRNR+EM PS+LYEDFPSKE FE  CD+AR+ G +L+EDSK MR+IV  E H +MR+
Sbjct: 386 WETDRNRVEMIPSHLYEDFPSKEWFEQCCDYARDNGYLLWEDSKRMRLIVRGEFHPEMRE 445

Query: 723 FLRR 734
           FLRR
Sbjct: 446 FLRR 449


>gb|EEC78260.1| hypothetical protein OsI_17944 [Oryza sativa Indica Group]
          Length = 459

 Score =  394 bits (1012), Expect = e-107
 Identities = 193/252 (76%), Positives = 225/252 (89%), Gaps = 8/252 (3%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS+AE+RGVDPT+LIS LLELSFH+LG+AY+LNTLTDVQR AI+DL ELGLVK
Sbjct: 206 WYIMREYISSAEERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVK 265

Query: 183 LQH--------GRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYS 338
           LQ         GRK+ WFIPTKLATNLS S +DS+SNKEGFVVVETNFRMY+YSTS+L+ 
Sbjct: 266 LQQMSRVKPWQGRKDSWFIPTKLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSRLHC 325

Query: 339 EILRLFSRIEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPE 518
           EILRLFSR+EYQLPNLIVG+IT+ESLY AFENGITAEQIISFLQQNAHPRVA+KIP VPE
Sbjct: 326 EILRLFSRVEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPE 385

Query: 519 NVTDQIRLWETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHV 698
           NVTDQIRLWETDRNR++MT S+LYEDFPSK++F+  CD+AR+ G +L+ED+K MR+IV V
Sbjct: 386 NVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRV 445

Query: 699 EVHQDMRDFLRR 734
           E H +MR+FLRR
Sbjct: 446 EFHSEMREFLRR 457


>ref|XP_004972571.1| PREDICTED: general transcription factor IIH subunit 4-like [Setaria
           italica]
          Length = 451

 Score =  392 bits (1007), Expect = e-106
 Identities = 191/244 (78%), Positives = 219/244 (89%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS+AE+RGVDPT+LIS LLELSFH LG AY+LNTLTDV+R AI+DL ELGLVK
Sbjct: 206 WYIMREYISSAEERGVDPTELISFLLELSFHKLGAAYSLNTLTDVERIAIRDLAELGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRK+ WFIPT+LATNLS S +DS+S+KEGFVV+ETNFRMY+YSTSKL+ EILRLFSR
Sbjct: 266 LQQGRKDSWFIPTQLATNLSASLSDSSSSKEGFVVLETNFRMYAYSTSKLHCEILRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGAIT+ES+Y AFENGITAEQIISFL+QNAHPRV +KIP VPENVTDQIRL
Sbjct: 326 VEYQLPNLIVGAITKESIYGAFENGITAEQIISFLRQNAHPRVVDKIPVVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WETDRNR+EM PS+LYEDFPSKE FE  CD AR+ G +L+EDSK MR+IV  E H +MR+
Sbjct: 386 WETDRNRVEMIPSHLYEDFPSKEWFEQCCDHARDHGYLLWEDSKRMRLIVRGEFHPEMRE 445

Query: 723 FLRR 734
           FLRR
Sbjct: 446 FLRR 449


>tpg|DAA35322.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
          Length = 451

 Score =  391 bits (1004), Expect = e-106
 Identities = 190/244 (77%), Positives = 218/244 (89%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS+AE+RGVDPT+LIS LLELSFH LG AY+LNTLTDVQR AI+DL ELGLVK
Sbjct: 206 WYIMREYISSAEERGVDPTELISFLLELSFHKLGAAYSLNTLTDVQRIAIRDLAELGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
            Q GRK+ WFIPT+LATNLS S +DS+SNKEGFVVVETNFRMY+YSTSKL+ EILRLF+R
Sbjct: 266 QQQGRKDSWFIPTQLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSKLHCEILRLFAR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGA+T+ES+Y AFENGITAEQIISFL+QNAHPRVA+KIP VPENVTDQIRL
Sbjct: 326 VEYQLPNLIVGAVTKESIYGAFENGITAEQIISFLRQNAHPRVADKIPAVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WETD NR+EM PS+LYEDFPSKE FE  CD+AR+ G +L+ED K MR+IV  E H +MR+
Sbjct: 386 WETDLNRVEMIPSHLYEDFPSKEWFEQCCDYARDNGYLLWEDPKRMRLIVRGEFHPEMRE 445

Query: 723 FLRR 734
           FLRR
Sbjct: 446 FLRR 449


>emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
          Length = 451

 Score =  390 bits (1001), Expect = e-106
 Identities = 186/245 (75%), Positives = 219/245 (89%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS +E+RGVDP DLIS LLELSFH  G+AYN+NTLT+ QR  IKDL +LGLVK
Sbjct: 206 WYIMREYISNSEERGVDPADLISFLLELSFHVTGEAYNINTLTEFQRNTIKDLVDLGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRKE WFIPTKLATNLS+S +D++S K+GFVVVETNFR+Y+YS+SKL+ EILRLFSR
Sbjct: 266 LQQGRKESWFIPTKLATNLSMSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGAIT+ESLYNAFENGITAEQIISFLQQNAHPRVA + P VPENVTDQIRL
Sbjct: 326 VEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAERTPAVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WETD NR+E  PS+LY++FPS++VFEAACDFARE GG+L+EDSK MR++V  E+H  MR+
Sbjct: 386 WETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMRE 445

Query: 723 FLRRA 737
           +LRR+
Sbjct: 446 YLRRS 450


>ref|XP_003580836.1| PREDICTED: general transcription factor IIH subunit 4-like
           [Brachypodium distachyon]
          Length = 451

 Score =  386 bits (992), Expect = e-105
 Identities = 186/244 (76%), Positives = 220/244 (90%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS+AE+RGVDPT+LIS LLELSFH+LG AY+ NTLTDVQR AI+DL ELGLVK
Sbjct: 206 WYIMREYISSAEERGVDPTELISFLLELSFHTLGAAYSFNTLTDVQRIAIRDLAELGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           +Q GRK+ WFIPTKLATNLS S +DS+++KEG VVVETNFR+Y+YS S+L+ EILRLFSR
Sbjct: 266 VQQGRKDSWFIPTKLATNLSSSLSDSSASKEGIVVVETNFRLYAYSASRLHCEILRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGAIT+ESLY AF+NGITAEQIISFL+QNAHPRVA+KIP VPENVTDQIRL
Sbjct: 326 VEYQLPNLIVGAITKESLYGAFDNGITAEQIISFLKQNAHPRVADKIPVVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WETDRNR++M  S++YEDFPSK++FE  CD AR+ G +L+EDSK MR+IV VE HQ+MR+
Sbjct: 386 WETDRNRVDMVLSHVYEDFPSKDMFEQCCDLARDNGFLLWEDSKKMRLIVRVEFHQEMRE 445

Query: 723 FLRR 734
           FLRR
Sbjct: 446 FLRR 449


>ref|XP_002305144.1| transcription factor-related family protein [Populus trichocarpa]
           gi|222848108|gb|EEE85655.1| transcription factor-related
           family protein [Populus trichocarpa]
          Length = 449

 Score =  386 bits (992), Expect = e-105
 Identities = 182/243 (74%), Positives = 217/243 (89%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYIIREYI+ +E+RG +P DLIS LLELSFH  G+AYN+NTLT++QR  IKDL ELGLVK
Sbjct: 204 WYIIREYITNSEERGTEPADLISFLLELSFHVTGEAYNMNTLTEIQRNTIKDLAELGLVK 263

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRKE WFIPTKLATNLSVS TDS+S K+G+VVVETNFR+Y+YS+SKL+ EILRLFS+
Sbjct: 264 LQQGRKESWFIPTKLATNLSVSLTDSSSRKQGYVVVETNFRLYAYSSSKLHCEILRLFSK 323

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           IEYQLPNLIVGAIT+ESLY AFENGIT++QIISFLQQNAHPRVA ++P+VPENVTDQIRL
Sbjct: 324 IEYQLPNLIVGAITKESLYTAFENGITSDQIISFLQQNAHPRVAERLPSVPENVTDQIRL 383

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WE D NR+E+TPS+ Y++FPS++ FEAACDFARE  G+L+EDSK MRV+V  E+H +MR+
Sbjct: 384 WEADLNRVEITPSHFYDEFPSRDTFEAACDFAREWNGLLWEDSKKMRVVVKAEIHMNMRE 443

Query: 723 FLR 731
           FLR
Sbjct: 444 FLR 446


>ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
           sativus]
          Length = 451

 Score =  384 bits (987), Expect = e-104
 Identities = 184/244 (75%), Positives = 219/244 (89%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYIIREYIS AE+RGVDP DLIS LLELSFH  G+AY+++TL+D QR AIKDL +LGLVK
Sbjct: 206 WYIIREYISNAEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRKE WFIPTKLATNLS+S  DS+S K GFVVVETNFRMY+YSTSKL+ EILRLFSR
Sbjct: 266 LQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVVVETNFRMYAYSTSKLHCEILRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           IEYQLPNLIVGAIT+ESLYNAF+NGITAEQI++FLQQNAHPRVA +IP+VPENVTDQIRL
Sbjct: 326 IEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WE+D NR+++TP++ Y++FPS+EVFEAACD+ARE  G+L+EDSKN+R++V  ++H  MR+
Sbjct: 386 WESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVVKADIHTHMRE 445

Query: 723 FLRR 734
            LRR
Sbjct: 446 HLRR 449


>ref|XP_003563288.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
           subunit 4-like [Brachypodium distachyon]
          Length = 452

 Score =  384 bits (986), Expect = e-104
 Identities = 185/244 (75%), Positives = 219/244 (89%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS+AE+RGVDPT+LIS LLELSFH+LG AY+ NTLTDVQR AI+DL ELGLVK
Sbjct: 207 WYIMREYISSAEERGVDPTELISFLLELSFHTLGAAYSFNTLTDVQRIAIRDLAELGLVK 266

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           +Q GRK+ WFIPTKLATNLS S +DS+++KEG VVVETNFR+Y+YS S+L+ EILRLFSR
Sbjct: 267 VQQGRKDSWFIPTKLATNLSSSLSDSSASKEGIVVVETNFRLYAYSASRLHCEILRLFSR 326

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGAIT+ESLY AF+NGITAEQIISFL+QNAHP VA+KIP VPENVTDQIRL
Sbjct: 327 VEYQLPNLIVGAITKESLYGAFDNGITAEQIISFLKQNAHPXVADKIPVVPENVTDQIRL 386

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WETDRNR++M  S++YEDFPSK++FE  CD AR+ G +L+EDSK MR+IV VE HQ+MR+
Sbjct: 387 WETDRNRVDMVLSHVYEDFPSKDLFEQCCDLARDNGFLLWEDSKKMRLIVRVEFHQEMRE 446

Query: 723 FLRR 734
           FLRR
Sbjct: 447 FLRR 450


>ref|XP_004505045.1| PREDICTED: general transcription factor IIH subunit 4-like [Cicer
           arietinum]
          Length = 451

 Score =  380 bits (976), Expect = e-103
 Identities = 184/244 (75%), Positives = 214/244 (87%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYIIREYIS +E+RGVD  DLIS +LELSFH +G+AYN+NTLTD QR  IKDL +LGLVK
Sbjct: 206 WYIIREYISNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTDFQRNIIKDLADLGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRKE WFIPTKLATNLSVS T+S+S KEGFVVVETNFR+Y+YSTSKL+ EILRLFSR
Sbjct: 266 LQQGRKESWFIPTKLATNLSVSLTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGAIT+ESLYNA ENGITAEQI+SFL+QNAHPRVA +IP VPENVTDQIRL
Sbjct: 326 VEYQLPNLIVGAITKESLYNALENGITAEQIVSFLRQNAHPRVAQRIPAVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WE+D NR+EMT +Y Y++FPS++VFE ACD ARE  G+L+E+SK M ++V  EVH  +RD
Sbjct: 386 WESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWNGLLWENSKKMHLVVKSEVHSYVRD 445

Query: 723 FLRR 734
           FLRR
Sbjct: 446 FLRR 449


>ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
           gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative
           [Ricinus communis]
          Length = 451

 Score =  380 bits (976), Expect = e-103
 Identities = 180/243 (74%), Positives = 218/243 (89%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYIIREYIS +E+RG+D  DLIS LLELSFH  G+AYN+  LT+ QR  IKDL +LGLVK
Sbjct: 206 WYIIREYISNSEERGLDSADLISFLLELSFHITGEAYNMIMLTEFQRNMIKDLADLGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRKE WFIPTKLATNLS+S TDS+S K+GFVVVETNFRMY+YSTSKL+ EI+RLFSR
Sbjct: 266 LQQGRKESWFIPTKLATNLSMSLTDSSSRKQGFVVVETNFRMYAYSTSKLHCEIMRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNL+VGA+T+ESLY+AFENGITAEQIISFLQQNAHPRVA +IP+VPENVTDQIRL
Sbjct: 326 VEYQLPNLVVGAMTKESLYSAFENGITAEQIISFLQQNAHPRVAERIPSVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WE+D NR+EMTP++LY++FPS++VFEAAC+FAR+  G+L+EDSK MR++V  E+H +MR+
Sbjct: 386 WESDMNRVEMTPAHLYDEFPSRDVFEAACNFARDWNGLLWEDSKRMRMVVKAEIHLNMRE 445

Query: 723 FLR 731
           +LR
Sbjct: 446 YLR 448


>ref|XP_006467817.1| PREDICTED: general transcription factor IIH subunit 4-like [Citrus
           sinensis]
          Length = 450

 Score =  380 bits (975), Expect = e-103
 Identities = 176/243 (72%), Positives = 218/243 (89%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS +++RG++  DLIS LLELSFH  G+AYNLNTL+++Q++ IKD  +LGLVK
Sbjct: 204 WYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVK 263

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRKE WFIPTKLATNLS+S TDS++ KEGF+VVETNFRMY+YSTSKL+ EILRLFS+
Sbjct: 264 LQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSK 323

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGAIT+ESLYNAFENGITAEQIISFLQQNAHPRVA+++P+VPENV DQIRL
Sbjct: 324 VEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRL 383

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WE+D NR+EMTP++ Y++FPS++VFEAACD+AR+  G+L+ED K MR++V  E+H  MR+
Sbjct: 384 WESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMRE 443

Query: 723 FLR 731
           FLR
Sbjct: 444 FLR 446


>ref|XP_006827784.1| hypothetical protein AMTR_s00009p00265760 [Amborella trichopoda]
           gi|548832404|gb|ERM95200.1| hypothetical protein
           AMTR_s00009p00265760 [Amborella trichopoda]
          Length = 469

 Score =  379 bits (974), Expect = e-103
 Identities = 184/244 (75%), Positives = 214/244 (87%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIST+E RG+D  +LIS LLELSFH  G+AYN+NTLT+VQ+ AIKDL  LGLVK
Sbjct: 224 WYIMREYISTSEGRGMDTAELISFLLELSFHVTGEAYNMNTLTEVQQIAIKDLATLGLVK 283

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRKE WFIPTKLATNLSVS +DS+S KEGFVVVETNFR+Y+YSTSKL+ EILRLF R
Sbjct: 284 LQQGRKESWFIPTKLATNLSVSLSDSSSRKEGFVVVETNFRLYAYSTSKLHCEILRLFCR 343

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           IEYQLPNLIVGAIT+ESLY AF+NGIT+EQII FLQQ+AHPRVA K P VPENVTDQIRL
Sbjct: 344 IEYQLPNLIVGAITKESLYTAFDNGITSEQIILFLQQHAHPRVAQKAPAVPENVTDQIRL 403

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WETD NR+EM  ++ YEDFPS +++EAACD+ARE GG L+EDSK MR+IV  E+H++M+D
Sbjct: 404 WETDLNRVEMNLAHFYEDFPSMDIYEAACDYARELGGFLWEDSKKMRLIVRGEMHEEMKD 463

Query: 723 FLRR 734
           FLRR
Sbjct: 464 FLRR 467


>ref|XP_004232855.1| PREDICTED: general transcription factor IIH subunit 4-like [Solanum
           lycopersicum]
          Length = 453

 Score =  379 bits (973), Expect = e-103
 Identities = 176/244 (72%), Positives = 217/244 (88%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYIIREYI+ AE+RGVD  DLI+ LLELSFH  G+AYN NT+TD+QR+ IKDL +LGLVK
Sbjct: 207 WYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQRSIIKDLSDLGLVK 266

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRKE WFIPTKLATNLS+S  D+ + K+GF+V+ETNFR+Y+YSTSKL+ EILRLF+R
Sbjct: 267 LQQGRKESWFIPTKLATNLSISLADTTTRKQGFIVIETNFRLYAYSTSKLHCEILRLFAR 326

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGAI +ESLY AF+NGIT+EQI+SFLQQNAHPRVA +IP+VPENVTDQIRL
Sbjct: 327 VEYQLPNLIVGAINKESLYKAFQNGITSEQIVSFLQQNAHPRVAERIPSVPENVTDQIRL 386

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WE+D NR+EMTP++ Y++FPSK+VFEAACDFARE GG+L+EDSK MR++V  ++  +M++
Sbjct: 387 WESDLNRVEMTPAHFYDEFPSKDVFEAACDFAREYGGLLWEDSKRMRLVVKADILAEMKE 446

Query: 723 FLRR 734
           FLRR
Sbjct: 447 FLRR 450


>ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355490119|gb|AES71322.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 452

 Score =  379 bits (972), Expect = e-102
 Identities = 181/244 (74%), Positives = 215/244 (88%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYIIREYI+ +E+RGVD  DLIS +LELSFH +G+AYN+NTLT+ QR  IKDL +LGLVK
Sbjct: 207 WYIIREYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVK 266

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRKE WFIPTKLATNLSVS T+S+S KEGFVVVETNFR+Y+YSTSKL+ EILRLFSR
Sbjct: 267 LQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSR 326

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGAIT+ESLYNAF+NGITA+QI+SFL+QNAHPRVA ++P VPENVTDQIRL
Sbjct: 327 VEYQLPNLIVGAITKESLYNAFDNGITADQIVSFLRQNAHPRVAQRVPAVPENVTDQIRL 386

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WE+D NR+EMT +Y Y++FPS++VFE ACD ARE  G+L+EDSK M ++V  EVH  +RD
Sbjct: 387 WESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSGLLWEDSKKMHLVVKSEVHTYVRD 446

Query: 723 FLRR 734
           FLRR
Sbjct: 447 FLRR 450


>dbj|BAJ91715.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 451

 Score =  378 bits (970), Expect = e-102
 Identities = 185/244 (75%), Positives = 216/244 (88%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYI+REYIS+AE+RGVDPTDLIS LLELSFH+ G AY+L+TLT+VQR A+ DL ELGLVK
Sbjct: 206 WYIMREYISSAEERGVDPTDLISFLLELSFHTQGAAYSLSTLTEVQRIAVMDLMELGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRK+ WFIPTKLATNLS S +DSA++KEG VVVETNFR+Y+YS SKL+ EILRLFSR
Sbjct: 266 LQQGRKDSWFIPTKLATNLSSSLSDSAASKEGIVVVETNFRLYAYSASKLHCEILRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGAIT+ESLY AF+NGITAEQIISFLQQNAHPRV +KIP VPENVTDQIRL
Sbjct: 326 VEYQLPNLIVGAITKESLYGAFDNGITAEQIISFLQQNAHPRVIDKIPIVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WE DRNR+EM  S++YEDFPSK++FE  CD AR+ G +L+ED+K MR+IV  E HQ+MR+
Sbjct: 386 WENDRNRVEMILSHVYEDFPSKDMFEQCCDHARDNGYLLWEDAKKMRLIVSGEFHQEMRE 445

Query: 723 FLRR 734
           FLRR
Sbjct: 446 FLRR 449


>ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355503331|gb|AES84534.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 451

 Score =  377 bits (969), Expect = e-102
 Identities = 181/244 (74%), Positives = 214/244 (87%)
 Frame = +3

Query: 3   WYIIREYISTAEDRGVDPTDLISLLLELSFHSLGQAYNLNTLTDVQRTAIKDLGELGLVK 182
           WYIIREYI+ +E+RGVD  DLIS +LELSFH +G+AYN+NTLT+ QR  IKDL +LGLVK
Sbjct: 206 WYIIREYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVK 265

Query: 183 LQHGRKEGWFIPTKLATNLSVSFTDSASNKEGFVVVETNFRMYSYSTSKLYSEILRLFSR 362
           LQ GRKE WFIPTKLATNLSVS T+S+S KEGFVVVETNFR+Y+YSTSKL+ EILRLFSR
Sbjct: 266 LQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSR 325

Query: 363 IEYQLPNLIVGAITRESLYNAFENGITAEQIISFLQQNAHPRVANKIPTVPENVTDQIRL 542
           +EYQLPNLIVGAIT+ESLYNAF+NGITA+QI+SF +QNAHPRVA +IP VPENVTDQIRL
Sbjct: 326 VEYQLPNLIVGAITKESLYNAFDNGITADQIVSFFRQNAHPRVAQRIPAVPENVTDQIRL 385

Query: 543 WETDRNRIEMTPSYLYEDFPSKEVFEAACDFAREAGGVLFEDSKNMRVIVHVEVHQDMRD 722
           WE+D NR+EMT +Y Y++FPS++VFE ACD ARE  G+L+EDSK M ++V  EVH  +RD
Sbjct: 386 WESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSGLLWEDSKKMHLVVKSEVHTYVRD 445

Query: 723 FLRR 734
           FLRR
Sbjct: 446 FLRR 449