BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber24_contig00042375
         (295 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006858556.1| hypothetical protein AMTR_s00071p00170380 [A...    85   1e-14
gb|EOX97062.1| Pseudouridine synthase family protein isoform 4 [...    80   2e-13
gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [...    80   2e-13
gb|EOX97060.1| Pseudouridine synthase family protein isoform 2 [...    80   2e-13
gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [...    80   2e-13
gb|EMJ26753.1| hypothetical protein PRUPE_ppa007576m2g, partial ...    73   3e-11
ref|XP_004977156.1| PREDICTED: tRNA pseudouridine synthase-like ...    70   3e-10
ref|XP_002441964.1| hypothetical protein SORBIDRAFT_08g005650 [S...    70   3e-10
ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-lik...    70   4e-10
gb|EXB29043.1| tRNA pseudouridine synthase A [Morus notabilis]         69   7e-10
ref|XP_006663893.1| PREDICTED: tRNA pseudouridine synthase-like ...    69   7e-10
ref|XP_006431657.1| hypothetical protein CICLE_v10001491mg [Citr...    69   9e-10
ref|XP_006349329.1| PREDICTED: tRNA pseudouridine synthase-like ...    67   2e-09
emb|CAN72774.1| hypothetical protein VITISV_026284 [Vitis vinifera]    67   2e-09
ref|XP_006471141.1| PREDICTED: tRNA pseudouridine synthase-like ...    67   3e-09
ref|XP_006471140.1| PREDICTED: tRNA pseudouridine synthase-like ...    67   3e-09
ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...    66   4e-09
ref|NP_001066352.1| Os12g0194800 [Oryza sativa Japonica Group] g...    66   6e-09
tpg|DAA55515.1| TPA: hypothetical protein ZEAMMB73_032156 [Zea m...    65   7e-09
ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus ...    65   7e-09

>ref|XP_006858556.1| hypothetical protein AMTR_s00071p00170380 [Amborella trichopoda]
           gi|548862665|gb|ERN20023.1| hypothetical protein
           AMTR_s00071p00170380 [Amborella trichopoda]
          Length = 367

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 42/76 (55%), Positives = 54/76 (71%), Gaps = 7/76 (9%)
 Frame = +1

Query: 88  EPKRPLDSPSESLKPPKQQRSEEEAGEGGDG-------MSHNSKAQRYLIAVEYIGTRFS 246
           + KR LDSP+ + K PK  +S+EE  EG +        M+ N + QRYL+A+EYIGTRFS
Sbjct: 9   QTKRTLDSPAHNSKAPKISKSQEEEDEGEEEAEYCREKMTENPRVQRYLVALEYIGTRFS 68

Query: 247 GSQRQPNCRTVVGLLE 294
           GSQ+QPNCRTV+G LE
Sbjct: 69  GSQKQPNCRTVMGALE 84


>gb|EOX97062.1| Pseudouridine synthase family protein isoform 4 [Theobroma cacao]
          Length = 341

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 9/80 (11%)
 Frame = +1

Query: 82  SKEPKRPLDSPSESLKPPK---------QQRSEEEAGEGGDGMSHNSKAQRYLIAVEYIG 234
           S+ PK  L +  ES +P K         Q+  EE+  +    MS N + QRYL+A+EYIG
Sbjct: 2   SENPKHSLSTTPESSRPSKIPKTQDHSDQEEEEEDKQQQESSMSKNPRIQRYLVAIEYIG 61

Query: 235 TRFSGSQRQPNCRTVVGLLE 294
           TRFSGSQ+QPNCRTVVG+LE
Sbjct: 62  TRFSGSQQQPNCRTVVGVLE 81


>gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [Theobroma cacao]
          Length = 373

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 9/80 (11%)
 Frame = +1

Query: 82  SKEPKRPLDSPSESLKPPK---------QQRSEEEAGEGGDGMSHNSKAQRYLIAVEYIG 234
           S+ PK  L +  ES +P K         Q+  EE+  +    MS N + QRYL+A+EYIG
Sbjct: 2   SENPKHSLSTTPESSRPSKIPKTQDHSDQEEEEEDKQQQESSMSKNPRIQRYLVAIEYIG 61

Query: 235 TRFSGSQRQPNCRTVVGLLE 294
           TRFSGSQ+QPNCRTVVG+LE
Sbjct: 62  TRFSGSQQQPNCRTVVGVLE 81


>gb|EOX97060.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
          Length = 345

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 9/80 (11%)
 Frame = +1

Query: 82  SKEPKRPLDSPSESLKPPK---------QQRSEEEAGEGGDGMSHNSKAQRYLIAVEYIG 234
           S+ PK  L +  ES +P K         Q+  EE+  +    MS N + QRYL+A+EYIG
Sbjct: 2   SENPKHSLSTTPESSRPSKIPKTQDHSDQEEEEEDKQQQESSMSKNPRIQRYLVAIEYIG 61

Query: 235 TRFSGSQRQPNCRTVVGLLE 294
           TRFSGSQ+QPNCRTVVG+LE
Sbjct: 62  TRFSGSQQQPNCRTVVGVLE 81


>gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 374

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 9/80 (11%)
 Frame = +1

Query: 82  SKEPKRPLDSPSESLKPPK---------QQRSEEEAGEGGDGMSHNSKAQRYLIAVEYIG 234
           S+ PK  L +  ES +P K         Q+  EE+  +    MS N + QRYL+A+EYIG
Sbjct: 2   SENPKHSLSTTPESSRPSKIPKTQDHSDQEEEEEDKQQQESSMSKNPRIQRYLVAIEYIG 61

Query: 235 TRFSGSQRQPNCRTVVGLLE 294
           TRFSGSQ+QPNCRTVVG+LE
Sbjct: 62  TRFSGSQQQPNCRTVVGVLE 81


>gb|EMJ26753.1| hypothetical protein PRUPE_ppa007576m2g, partial [Prunus persica]
          Length = 129

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
 Frame = +1

Query: 43  SSDLCSATPSLNSSKEPKRP--LDSPSESLKPPKQQRSEEEAGEGGDGMSHNSKAQRYLI 216
           + +L  +  S++SS  P RP  +   ++ L   +QQ+ +++  E    MS     QRYL+
Sbjct: 2   TENLKHSLDSISSSHSPHRPSKISKTTDDLSDDEQQQQQQQQPES---MSQRPGIQRYLL 58

Query: 217 AVEYIGTRFSGSQRQPNCRTVVGLLE 294
           A+EYIGTRFSGSQ+Q NCRTVVG+LE
Sbjct: 59  AIEYIGTRFSGSQQQSNCRTVVGVLE 84


>ref|XP_004977156.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Setaria
           italica]
          Length = 385

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 17/90 (18%)
 Frame = +1

Query: 76  NSSKEPKRPLD-SPSESLKPPKQQRSEEEAGEGGDGMS----------------HNSKAQ 204
           N +   KRP D S ++   P K QRS +      DG++                 N +AQ
Sbjct: 5   NPAASAKRPCDPSLADPTPPAKLQRSSDPPDPAPDGITGGGEAAGVESEAMAGVRNPRAQ 64

Query: 205 RYLIAVEYIGTRFSGSQRQPNCRTVVGLLE 294
           RYL+AVEY+GTRFSGSQ+QPN RTVVG+LE
Sbjct: 65  RYLVAVEYVGTRFSGSQQQPNQRTVVGVLE 94


>ref|XP_002441964.1| hypothetical protein SORBIDRAFT_08g005650 [Sorghum bicolor]
           gi|241942657|gb|EES15802.1| hypothetical protein
           SORBIDRAFT_08g005650 [Sorghum bicolor]
          Length = 387

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 44/86 (51%), Positives = 52/86 (60%), Gaps = 14/86 (16%)
 Frame = +1

Query: 79  SSKEPKRP-LDSPSESLK-----------PPKQQRSEEEAGEGGDGMS--HNSKAQRYLI 216
           SSK P  P LD P+ S K           P  +     E GE  + M+   N +AQRYL+
Sbjct: 11  SSKRPCDPSLDDPTPSAKLQRSSEPSDPTPAVKPNGGAETGEESEVMAGARNPRAQRYLV 70

Query: 217 AVEYIGTRFSGSQRQPNCRTVVGLLE 294
           AVEYIGTRFSGSQ+QPN RTVVG+LE
Sbjct: 71  AVEYIGTRFSGSQQQPNQRTVVGVLE 96


>ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca
           subsp. vesca]
          Length = 350

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 40/72 (55%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
 Frame = +1

Query: 82  SKEPKRPLDSPSESLK-PPKQQRSEEEAGEGGDGMSHNSKAQRYLIAVEYIGTRFSGSQR 258
           S+  K  L+S S+S K P K  ++  E  E  + MS     QRYLIA+EYIGTRFSGSQ+
Sbjct: 2   SENLKHSLESRSQSPKRPSKISKTTSEEAEA-ESMSKPQGIQRYLIAIEYIGTRFSGSQQ 60

Query: 259 QPNCRTVVGLLE 294
           Q NCRTVVG+LE
Sbjct: 61  QSNCRTVVGVLE 72


>gb|EXB29043.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 326

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 15/86 (17%)
 Frame = +1

Query: 82  SKEPKRPLDSP--SESLKPPK-----------QQRSEEEAGEGGD--GMSHNSKAQRYLI 216
           +++ K PLD+   S S +P K           +Q  E+++G G     MS N + QRYL+
Sbjct: 2   TEDSKHPLDTDEFSSSQRPLKVAKTAEIPSDDKQEEEQQSGIGPPQKSMSQNPRIQRYLV 61

Query: 217 AVEYIGTRFSGSQRQPNCRTVVGLLE 294
           A+EY+GTRFSGSQ+Q NCRTV+G+LE
Sbjct: 62  AIEYVGTRFSGSQQQLNCRTVMGVLE 87


>ref|XP_006663893.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Oryza
           brachyantha]
          Length = 397

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 45/100 (45%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
 Frame = +1

Query: 19  SVAEMVDDSSDLCSATPSLNSSKEP-KRPLDSPSESLKPPKQQRSEE-EAGEGGDGMSH- 189
           S A   D +S      PSL     P K P  S  +    P + R +    GE  +G    
Sbjct: 8   SSAAAADSASSKRPIGPSLAEPSPPAKVPRSSQPDPCPSPAEARGDAANGGEVAEGSREE 67

Query: 190 -----NSKAQRYLIAVEYIGTRFSGSQRQPNCRTVVGLLE 294
                N +AQRYL+AVEYIGTRFSGSQ+QPN RTVVG+LE
Sbjct: 68  MAGAWNPRAQRYLVAVEYIGTRFSGSQQQPNQRTVVGVLE 107


>ref|XP_006431657.1| hypothetical protein CICLE_v10001491mg [Citrus clementina]
           gi|557533779|gb|ESR44897.1| hypothetical protein
           CICLE_v10001491mg [Citrus clementina]
          Length = 382

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 42/90 (46%), Positives = 52/90 (57%)
 Frame = +1

Query: 25  AEMVDDSSDLCSATPSLNSSKEPKRPLDSPSESLKPPKQQRSEEEAGEGGDGMSHNSKAQ 204
           A+ + + S+  S  P     KE     DS  E  + P++        E    MS N + Q
Sbjct: 5   AKRISECSEQASKIPE---EKEEDHQNDSVEEEEEYPEEVPETRTVTEV---MSTNKRIQ 58

Query: 205 RYLIAVEYIGTRFSGSQRQPNCRTVVGLLE 294
           RYLIAVEYIGTRFSGSQ+Q NCRTVVG+LE
Sbjct: 59  RYLIAVEYIGTRFSGSQKQLNCRTVVGVLE 88


>ref|XP_006349329.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Solanum
           tuberosum]
          Length = 389

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 42/94 (44%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
 Frame = +1

Query: 37  DDSSDLCSATPSLNSSKEPKRPLDSPSESLKPPKQQ--------RSEEEAGEGGDGMSHN 192
           D S  L S T   N     +RP +SP    K PK            EE+       M+ N
Sbjct: 4   DQSQPLISET---NKHSLDQRP-ESPQRPSKFPKVNDDAGNDVLEGEEQKESVTRTMNPN 59

Query: 193 SKAQRYLIAVEYIGTRFSGSQRQPNCRTVVGLLE 294
            + QRYLIA+EYIGTRF+G+Q+QPNCRTVVG+L+
Sbjct: 60  PRLQRYLIAIEYIGTRFAGAQQQPNCRTVVGVLQ 93


>emb|CAN72774.1| hypothetical protein VITISV_026284 [Vitis vinifera]
          Length = 812

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 7/77 (9%)
 Frame = +1

Query: 82  SKEPKRPLDSPSESLKPPKQQRSEEEAGEG-------GDGMSHNSKAQRYLIAVEYIGTR 240
           S  PK  L+  SES + P +    ++  +G          M+ N + QRYL+AVEYIGTR
Sbjct: 627 SDSPKHLLNRRSESPQRPSKIARTDDLSDGEQQDSVASKTMTQNPRVQRYLVAVEYIGTR 686

Query: 241 FSGSQRQPNCRTVVGLL 291
           FSGSQ+Q NCRTVVG L
Sbjct: 687 FSGSQQQLNCRTVVGAL 703


>ref|XP_006471141.1| PREDICTED: tRNA pseudouridine synthase-like 1-like isoform X2
           [Citrus sinensis]
          Length = 382

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 38/90 (42%), Positives = 50/90 (55%)
 Frame = +1

Query: 25  AEMVDDSSDLCSATPSLNSSKEPKRPLDSPSESLKPPKQQRSEEEAGEGGDGMSHNSKAQ 204
           A+ + + S+  S  P           ++   E  +   + R+  E       MS N + Q
Sbjct: 5   AKRISECSEQASKIPEEKEEDHQNYSVEEEEEYPEEVPETRTVTEV------MSTNKRIQ 58

Query: 205 RYLIAVEYIGTRFSGSQRQPNCRTVVGLLE 294
           RYLIAVEYIGTRFSGSQ+Q NCRTVVG+LE
Sbjct: 59  RYLIAVEYIGTRFSGSQKQLNCRTVVGVLE 88


>ref|XP_006471140.1| PREDICTED: tRNA pseudouridine synthase-like 1-like isoform X1
           [Citrus sinensis]
          Length = 383

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 38/90 (42%), Positives = 50/90 (55%)
 Frame = +1

Query: 25  AEMVDDSSDLCSATPSLNSSKEPKRPLDSPSESLKPPKQQRSEEEAGEGGDGMSHNSKAQ 204
           A+ + + S+  S  P           ++   E  +   + R+  E       MS N + Q
Sbjct: 5   AKRISECSEQASKIPEEKEEDHQNYSVEEEEEYPEEVPETRTVTEV------MSTNKRIQ 58

Query: 205 RYLIAVEYIGTRFSGSQRQPNCRTVVGLLE 294
           RYLIAVEYIGTRFSGSQ+Q NCRTVVG+LE
Sbjct: 59  RYLIAVEYIGTRFSGSQKQLNCRTVVGVLE 88


>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
           gi|297739525|emb|CBI29707.3| unnamed protein product
           [Vitis vinifera]
          Length = 380

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
 Frame = +1

Query: 82  SKEPKRPLDSPSESLKPPKQQRSEEEAGEG-------GDGMSHNSKAQRYLIAVEYIGTR 240
           S  PK  L+  SES + P +    ++  +G          M+ N + QRYL+AVEYIGTR
Sbjct: 15  SDSPKHLLNRRSESPQRPSKIARTDDLSDGEQQDSVASKTMTQNPRVQRYLVAVEYIGTR 74

Query: 241 FSGSQRQPNCRTVVGLLE 294
           FSGSQ+Q NCRTV G L+
Sbjct: 75  FSGSQQQLNCRTVAGALQ 92


>ref|NP_001066352.1| Os12g0194800 [Oryza sativa Japonica Group]
           gi|108862288|gb|ABA96079.2| tRNA pseudouridine synthase
           family protein, putative, expressed [Oryza sativa
           Japonica Group] gi|113648859|dbj|BAF29371.1|
           Os12g0194800 [Oryza sativa Japonica Group]
           gi|215678805|dbj|BAG95242.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|222616774|gb|EEE52906.1| hypothetical protein
           OsJ_35509 [Oryza sativa Japonica Group]
          Length = 391

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 22/103 (21%)
 Frame = +1

Query: 52  LCSATPSLNSSKEPKRPLD------SPSESLK---PPKQQRSEEEAGEGGDGM------- 183
           + +ATP  +S+   KRP+D      SP+  L+   PP      E  G+  DG        
Sbjct: 1   MSAATP--DSAAAAKRPIDPSHADPSPAAKLQRSSPPDPSPPAEAQGDATDGGGEVAGVR 58

Query: 184 ------SHNSKAQRYLIAVEYIGTRFSGSQRQPNCRTVVGLLE 294
                 + N +AQRYL+AVEY+GTRFSGSQ+Q N RTVVG+LE
Sbjct: 59  SGEMAGARNPQAQRYLVAVEYVGTRFSGSQQQLNQRTVVGVLE 101


>tpg|DAA55515.1| TPA: hypothetical protein ZEAMMB73_032156 [Zea mays]
          Length = 443

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 39/79 (49%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
 Frame = +1

Query: 64  TPS--LNSSKEPKRPLDSPSESLKPPKQQRSEEEAGEGGDGMSHNSKAQRYLIAVEYIGT 237
           TPS  L    EP  P  +   +      + SE  AG      + N +AQRYL+AVEYIGT
Sbjct: 23  TPSAKLQRCSEPSEPTPAGKPNGGAATGEESEMMAG------ARNPRAQRYLVAVEYIGT 76

Query: 238 RFSGSQRQPNCRTVVGLLE 294
           RFSGSQ+QPN RTV G+LE
Sbjct: 77  RFSGSQKQPNQRTVTGVLE 95


>ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
           gi|223534233|gb|EEF35948.1| pseudouridylate synthase,
           putative [Ricinus communis]
          Length = 372

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 12/83 (14%)
 Frame = +1

Query: 82  SKEPKRPLDS-----PSESLKPPK----QQRSEEEAGEGG---DGMSHNSKAQRYLIAVE 225
           ++ PK  LD+     PS+ LK        +  EEE  E     + MS N K QRYLIAVE
Sbjct: 2   TENPKHSLDTESRNRPSKILKTQDFVDDNEEGEEELQESSFVAESMSSNPKLQRYLIAVE 61

Query: 226 YIGTRFSGSQRQPNCRTVVGLLE 294
           YIGT+F+GSQ+Q N RTVVG+LE
Sbjct: 62  YIGTKFAGSQKQLNGRTVVGVLE 84